Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 46 of 173
Found at i:12594017 original size:21 final size:17
Alignment explanation
Indices: 12593977--12594021 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 17
12593967 TGAATTATAT
12593977 ATGTGAATTAATATTGA
1 ATGTGAATTAATATTGA
12593994 ATGTGAATTGAATTATGATGA
1 ATGTGAATT-AA-TAT--TGA
12594015 ATGTGAA
1 ATGTGAA
12594022 GGAAATTGTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 9 0.38
18 2 0.08
19 3 0.12
21 10 0.42
ACGTcount: A:0.40, C:0.00, G:0.22, T:0.38
Consensus pattern (17 bp):
ATGTGAATTAATATTGA
Found at i:12594272 original size:23 final size:23
Alignment explanation
Indices: 12594245--12594342 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
12594235 AGTGTTATTG
12594245 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
12594268 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
12594291 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
12594313 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
12594336 ATCAGTG
1 ATCAGTG
12594343 TGGCACTTAT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:12594311 original size:45 final size:45
Alignment explanation
Indices: 12594247--12594335 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
12594237 TGTTATTGAT
* *
12594247 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
12594292 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
12594336 ATCAGTGTGG
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:12599492 original size:18 final size:17
Alignment explanation
Indices: 12599459--12599497 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
12599449 TTGTATAAAT
12599459 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
12599477 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
12599494 TGTG
1 TGTG
12599498 GAAGGAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:12599595 original size:74 final size:74
Alignment explanation
Indices: 12599502--12599647 Score: 276
Period size: 74 Copynumber: 2.0 Consensus size: 74
12599492 AATGTGGAAG
12599502 GAAATTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATT-CCG
1 GAAATTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCCG
12599566 GTTGAACAT
66 GTTGAACAT
12599575 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAA-TTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
12599640 GGTTGAAC
65 GGTTGAAC
12599648 TTAGGAATAG
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
73 4 0.06
74 57 0.80
75 10 0.14
ACGTcount: A:0.38, C:0.08, G:0.21, T:0.34
Consensus pattern (74 bp):
GAAATTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCCG
GTTGAACAT
Found at i:12599823 original size:23 final size:23
Alignment explanation
Indices: 12599796--12599894 Score: 164
Period size: 23 Copynumber: 4.3 Consensus size: 23
12599786 AGTGTTATTG
12599796 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
12599819 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
12599842 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
12599864 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
12599887 ATCAGTGG
1 ATCAGTGG
12599895 CACTTATGTG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
22 20 0.29
23 50 0.71
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:12599862 original size:45 final size:45
Alignment explanation
Indices: 12599798--12599886 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
12599788 TGTTATTGAT
* *
12599798 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
12599843 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
12599887 ATCAGTGGCA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:12605096 original size:71 final size:75
Alignment explanation
Indices: 12605012--12605155 Score: 260
Period size: 73 Copynumber: 2.0 Consensus size: 75
12605002 AATGTGGAAG
12605012 GAAAGTTGTTCATGAA-TATTCAAGTGAT-AAGTGTTGAAAATAAAGTGTTAAGTGTAAA-T-CC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
12605073 GGTTGAACAT
66 GGTTGAACAT
12605083 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
12605148 GGTTGAAC
66 GGTTGAAC
12605156 TTAGGAATAG
Statistics
Matches: 69, Mismatches: 0, Indels: 4
0.95 0.00 0.05
Matches are distributed among these distances:
71 16 0.23
72 12 0.17
73 30 0.43
74 1 0.01
75 10 0.14
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.33
Consensus pattern (75 bp):
GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
GGTTGAACAT
Found at i:12605370 original size:45 final size:45
Alignment explanation
Indices: 12605306--12605391 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
12605296 TGTTATTGAT
* *
12605306 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
12605351 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTA
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTA
12605392 ATATCAGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:12605398 original size:22 final size:23
Alignment explanation
Indices: 12605304--12605400 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
12605294 AGTGTTATTG
12605304 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
12605327 TTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
12605350 -CCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
12605372 ATCAGTGGTAGCTTCGGCTA-AT
1 ATCAGTGGTAGCTTCGGCTACAT
12605394 ATCAGTG
1 ATCAGTG
12605401 TGGCACTTAT
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
22 29 0.43
23 39 0.57
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:12605400 original size:45 final size:46
Alignment explanation
Indices: 12605304--12605400 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 46
12605294 AGTGTTATTG
* *
12605304 ATCAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
*
12605350 -CCAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTA-AT
1 ATCAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
12605394 ATCAGTG
1 ATCAGTG
12605401 TGGCACTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
44 2 0.04
45 44 0.96
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACAT
Found at i:12610525 original size:18 final size:17
Alignment explanation
Indices: 12610492--12610530 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
12610482 TTGTATAAAT
12610492 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
12610510 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
12610527 TGTG
1 TGTG
12610531 GAAGGAAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:12610665 original size:74 final size:74
Alignment explanation
Indices: 12610535--12610680 Score: 276
Period size: 74 Copynumber: 2.0 Consensus size: 74
12610525 AATGTGGAAG
12610535 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATTCCC
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAA-TCCC
12610600 GGTTGAACAT
65 GGTTGAACAT
12610610 GAAAGTTGTTCATGAATTATTCAAGTGA-AAAGTGTTGAAAATAAAGTGTTAAGTGTAAATCCCG
1 GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATCCCG
12610674 GTTGAAC
66 GTTGAAC
12610681 TTAGGAATAG
Statistics
Matches: 71, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
73 12 0.17
74 31 0.44
75 28 0.39
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (74 bp):
GAAAGTTGTTCATGAATTATTCAAGTGATAAAGTGTTGAAAATAAAGTGTTAAGTGTAAATCCCG
GTTGAACAT
Found at i:12610855 original size:23 final size:23
Alignment explanation
Indices: 12610829--12610919 Score: 139
Period size: 23 Copynumber: 4.0 Consensus size: 23
12610819 GTGTTATTGA
12610829 TCAGTGGTAGCTTCGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
12610852 TCAGTGGTAGCTTTGGCTACA-T
1 TCAGTGGTAGCTTCGGCTACATT
* *
12610874 CCAGTGGTAGCTTCGGCTATCATA
1 TCAGTGGTAGCTTCGGCTA-CATT
12610898 TCAGTGGTAGCTTCGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
12610920 ATCGTGTGTG
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
22 18 0.30
23 25 0.41
24 18 0.30
ACGTcount: A:0.19, C:0.22, G:0.26, T:0.33
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:12610916 original size:46 final size:45
Alignment explanation
Indices: 12610830--12610919 Score: 153
Period size: 46 Copynumber: 2.0 Consensus size: 45
12610820 TGTTATTGAT
* *
12610830 CAGTGGTAGCTTCGGCTACATTTCAGTGGTAGCTTTGGCTACATC
1 CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
12610875 CAGTGGTAGCTTCGGCTATCATATCAGTGGTAGCTTCGGCTACAT
1 CAGTGGTAGCTTCGGCTA-CATATCAGTGGTAGCTTCGGCTACAT
12610920 ATCGTGTGTG
Statistics
Matches: 42, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
45 18 0.43
46 24 0.57
ACGTcount: A:0.19, C:0.22, G:0.27, T:0.32
Consensus pattern (45 bp):
CAGTGGTAGCTTCGGCTACATATCAGTGGTAGCTTCGGCTACATC
Found at i:12621503 original size:217 final size:217
Alignment explanation
Indices: 12621128--12621906 Score: 1123
Period size: 217 Copynumber: 3.6 Consensus size: 217
12621118 ACTAGTGCTG
* * * *
12621128 TAGTCTACTCCACTGCAA-TGTCAAGGAGAAAAGACTAGATGCAATTTGCTCTCTGCAACTTCAG
1 TAGTCTACTCCACTGCAACT-TCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAG
* * * * * *
12621192 AGAGATAAGATCTGTGATTTTAATCCGCTCCA-TAGCAACTTCAGGGAGATAAGATTATTGGCCT
65 AGAGATAAGATCCGAGATTTTAATCCGCTCCACTA-CAACTTCAGAGAGATAGGATTATCGGCTT
* *
12621256 TAATCTGATCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCCCACTGCAACT
129 TAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCCCACTGCAACT
12621321 TCAGGAGGATAAGACTTGCTTACT
194 TCAGGAGGATAAGACTTGCTTACT
*
12621345 TAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTACTCTCTGCAACTTCAGA
1 TAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
* * *
12621410 GAGATAAGATCCAAGATTTTAATCTGCTCCACTACAACTTTAGAGAGATAGGATTATCGGCTTTA
66 GAGATAAGATCCGAGATTTTAATCCGCTCCACTACAACTTCAGAGAGATAGGATTATCGGCTTTA
*
12621475 ACCTGCTTCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCCCACTGCAACTTC
131 ACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCCCACTGCAACTTC
*
12621540 AGGAGGATAAGACTTGCGTACT
196 AGGAGGATAAGACTTGCTTACT
* * *
12621562 TAGTCTGCTCCACTGCAACTTCAGAGAGATAAGACTAGATGCGATATGCTCTCTGCAACTTCAGA
1 TAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
* * *
12621627 GAGATAAGATCCGAGATTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTATCGACTTTA
66 GAGATAAGATCCGAGATTTTAATCCGCTCCACTACAACTTCAGAGAGATAGGATTATCGGCTTTA
* * * *
12621692 ACTTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTACCTCACTGTAACTTC
131 ACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCCCACTGCAACTTC
* *
12621757 AGGAAGATAGGACTTGCTTACT
196 AGGAGGATAAGACTTGCTTACT
* * * * * *
12621779 TAGTCTGCTCCACTGTAACTTCAGGGAGAT-AGACTAGATGCCATCTGCCCTCTGTAACTTTAGA
1 TAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
* * * * * * * *
12621843 GAGATAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAGAGAAATAGGATCATTGGCTTT
66 GAGATAAGATCCGAGATTTTAATCCGCTCCACTACAACTTCAGAGAGATAGGATTATCGGCTTT
12621907 CGATCTGTTC
Statistics
Matches: 508, Mismatches: 52, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
216 82 0.16
217 423 0.83
218 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (217 bp):
TAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGA
GAGATAAGATCCGAGATTTTAATCCGCTCCACTACAACTTCAGAGAGATAGGATTATCGGCTTTA
ACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCCATCTTCAGTCTGCCCCACTGCAACTTC
AGGAGGATAAGACTTGCTTACT
Found at i:12621888 original size:44 final size:43
Alignment explanation
Indices: 12621180--12621897 Score: 332
Period size: 44 Copynumber: 16.6 Consensus size: 43
12621170 AATTTGCTCT
*
12621180 CTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCT-TGATTTTAATCTGCTCCA
* * *** *
12621224 -TAGCAACTTCAGGGAGATAAGATTATTGGCCTTAATCTGATCCA
1 CT-GCAACTTCAGAGAGATAAGA-TCTTGATTTTAATCTGCTCCA
* * * * *
12621268 CTGCAACTTCAGGGAGATAAGGT-TTGCCATCTTCAGTCTGCCCCA
1 CTGCAACTTCAGAGAGATAAGATCTTG--AT-TTTAATCTGCTCCA
* * *
12621313 CTGCAACTTCAG-GAGGATAAGA-CTTGCTTACTTAGTCTACTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTTGATT--TTAATCTGCTCCA
* * *** * *
12621357 CTGCAACTTCAGGGAGATAAGA-CTAGA-TGCGATCTACT-CT
1 CTGCAACTTCAGAGAGATAAGATCTTGATTTTAATCTGCTCCA
**
12621397 CTGCAACTTCAGAGAGATAAGATCCAAGATTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGAT-CTTGATTTTAATCTGCTCCA
* * * ** * *
12621441 CTACAACTTTAGAGAGATAGGAT-TATCGGCTTTAACCTGCTTCA
1 CTGCAACTTCAGAGAGATAAGATCT-T-GATTTTAATCTGCTCCA
* * * * *
12621485 CTGCAACTTCAGGGAGATAAGGT-TTGCCATCTTCAGTCTGCCCCA
1 CTGCAACTTCAGAGAGATAAGATCTTG--AT-TTTAATCTGCTCCA
* * *
12621530 CTGCAACTTCAG-GAGGATAAGA-CTTGCGTACTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTTG-AT-TTTAATCTGCTCCA
* *** * *
12621574 CTGCAACTTCAGAGAGATAAGA-CTAGA-TGCGATATGCT-CT
1 CTGCAACTTCAGAGAGATAAGATCTTGATTTTAATCTGCTCCA
** *
12621614 CTGCAACTTCAGAGAGATAAGATCCGAGATTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGAT-CTTGATTTTAATCTGCTCCA
* * * * *
12621658 CTACAACTTTAGGGAGATAGGAT-TATCGACTTTAA-CTTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCT-T-GATTTTAATC-TGCTCCA
* * * * *
12621702 CTGCAACTTCAGGGAGATAAGGT-TTGCCATCTTCAGTCTAC-CTCA
1 CTGCAACTTCAGAGAGATAAGATCTTG--AT-TTTAATCTGCTC-CA
* * * *
12621747 CTGTAACTTCAG-GAAGATAGGA-CTTGCTTACTTAGTCTGCTCCA
1 CTGCAACTTCAGAG-AGATAAGATCTTGATT--TTAATCTGCTCCA
* * * *** *
12621791 CTGTAACTTCAGGGAGAT-AGA-CTAGA-TGCCATCTGC-CCT
1 CTGCAACTTCAGAGAGATAAGATCTTGATTTTAATCTGCTCCA
* * *
12621830 CTGTAACTTTAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCT-TGATTTTAATCTGCTCCA
* *
12621874 CTGCAACTTCAGAGAAATAGGATC
1 CTGCAACTTCAGAGAGATAAGATC
12621898 ATTGGCTTTC
Statistics
Matches: 509, Mismatches: 119, Indels: 92
0.71 0.17 0.13
Matches are distributed among these distances:
39 18 0.04
40 53 0.10
41 13 0.03
42 17 0.03
43 33 0.06
44 278 0.55
45 96 0.19
46 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
CTGCAACTTCAGAGAGATAAGATCTTGATTTTAATCTGCTCCA
Found at i:12639567 original size:36 final size:34
Alignment explanation
Indices: 12639514--12639624 Score: 125
Period size: 36 Copynumber: 3.1 Consensus size: 34
12639504 TGATGGTCGA
12639514 ATATGCCAATAGCATGTTTTTGATCTGTTAAACT
1 ATATGCCAATAGCATGTTTTTGATCTGTTAAACT
* * * * *
12639548 ATATGTCCAATTAGTATG-TTATGATATGTTTTATCT
1 ATATG-CCAA-TAGCATGTTTTTGATCTG-TTAAACT
12639584 AAATATGCCAATAGCATGTTTTTGATCTGTTAAACT
1 --ATATGCCAATAGCATGTTTTTGATCTGTTAAACT
12639620 ATATG
1 ATATG
12639625 TGGAACTAGT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
34 10 0.16
35 12 0.20
36 22 0.36
37 12 0.20
38 5 0.08
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (34 bp):
ATATGCCAATAGCATGTTTTTGATCTGTTAAACT
Found at i:12639635 original size:72 final size:72
Alignment explanation
Indices: 12639513--12639655 Score: 232
Period size: 72 Copynumber: 2.0 Consensus size: 72
12639503 GTGATGGTCG
*
12639513 AATATGCCAATAGCATGTTTTTGATCTGTTAAACTATATGTCCAATTAGTATGTTATGATATGTT
1 AATATGCCAATAGCATGTTTTTGATCTGTTAAACTATATGTCCAACTAGTATGTTATGATATGTT
*
12639578 TTATCTA
66 TAATCTA
** * *
12639585 AATATGCCAATAGCATGTTTTTGATCTGTTAAACTATATGTGGAACTAGTATGTTCTGATTTGTT
1 AATATGCCAATAGCATGTTTTTGATCTGTTAAACTATATGTCCAACTAGTATGTTATGATATGTT
12639650 TAATCT
66 TAATCT
12639656 GCATATAGGC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 65 1.00
ACGTcount: A:0.29, C:0.11, G:0.15, T:0.44
Consensus pattern (72 bp):
AATATGCCAATAGCATGTTTTTGATCTGTTAAACTATATGTCCAACTAGTATGTTATGATATGTT
TAATCTA
Found at i:12639639 original size:36 final size:35
Alignment explanation
Indices: 12639520--12639639 Score: 107
Period size: 36 Copynumber: 3.3 Consensus size: 35
12639510 TCGAATATGC
* *
12639520 CAATAGCATGTTTTTGATCTGTTAAACTATATGTC
1 CAATAGTATGTTTTTGATCTGTTAAACTATATGTG
* * * * * *
12639555 CAATTAGTATG-TTATGATATGTTTTATCTAAATATG
1 CAA-TAGTATGTTTTTGATCTG-TTAAACTATATGTG
*
12639591 CCAATAGCATGTTTTTGATCTGTTAAACTATATGTG
1 -CAATAGTATGTTTTTGATCTGTTAAACTATATGTG
*
12639627 GAACTAGTATGTT
1 CAA-TAGTATGTT
12639640 CTGATTTGTT
Statistics
Matches: 63, Mismatches: 17, Indels: 9
0.71 0.19 0.10
Matches are distributed among these distances:
35 13 0.21
36 39 0.62
37 11 0.17
ACGTcount: A:0.30, C:0.11, G:0.16, T:0.43
Consensus pattern (35 bp):
CAATAGTATGTTTTTGATCTGTTAAACTATATGTG
Found at i:12647316 original size:30 final size:30
Alignment explanation
Indices: 12647280--12647340 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
12647270 TGTGAAACTA
12647280 TTATGGCTTTGGTGTAATTCAAAATTTATG
1 TTATGGCTTTGGTGTAATTCAAAATTTATG
12647310 TTATGGCTTTGGTGTAATTCAAAATTTATG
1 TTATGGCTTTGGTGTAATTCAAAATTTATG
12647340 T
1 T
12647341 GGTCAAAATA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.26, C:0.07, G:0.20, T:0.48
Consensus pattern (30 bp):
TTATGGCTTTGGTGTAATTCAAAATTTATG
Found at i:12647740 original size:76 final size:76
Alignment explanation
Indices: 12647649--12647797 Score: 253
Period size: 76 Copynumber: 2.0 Consensus size: 76
12647639 TCGATATTTT
* *
12647649 TGTTGACACCATTTTTTTGCCAAAACGGGGTCGACTTGGATTTTGAAAATGAAAACGAAAATGGG
1 TGTTGACACCATTTTTTTGCCAAAACGGGGTAGACATGGATTTTGAAAATGAAAACGAAAATGGG
12647714 AGTCGCCAAGC
66 AGTCGCCAAGC
** *
12647725 TGTTGACACCATTTTTTTGTGAAAATGGGGTAGACATGGATTTTGAAAATGAAAACGAAAATGGG
1 TGTTGACACCATTTTTTTGCCAAAACGGGGTAGACATGGATTTTGAAAATGAAAACGAAAATGGG
12647790 AGTCGCCA
66 AGTCGCCA
12647798 CCAATCCTTT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 68 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (76 bp):
TGTTGACACCATTTTTTTGCCAAAACGGGGTAGACATGGATTTTGAAAATGAAAACGAAAATGGG
AGTCGCCAAGC
Found at i:12648759 original size:25 final size:26
Alignment explanation
Indices: 12648729--12648782 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
12648719 AACAAATATT
*
12648729 TATGTATATATATAAATTAT-AAATG
1 TATGTACATATATAAATTATAAAATG
* **
12648754 TATGTACATCTATGTATTATAAAATG
1 TATGTACATATATAAATTATAAAATG
12648780 TAT
1 TAT
12648783 ATAAGTATAC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (26 bp):
TATGTACATATATAAATTATAAAATG
Found at i:12651499 original size:72 final size:70
Alignment explanation
Indices: 12651289--12651499 Score: 250
Period size: 72 Copynumber: 3.0 Consensus size: 70
12651279 AGATTCGCTA
* * * *
12651289 CCTTTAGCTTTAATCTATTCCACTACGATA-G-CAAAGAGATAGGATTCGCTACCTTTAGCTTTA
1 CCTTTAGCTTTAATCTATTCCACTAC-A-ACGCCAAGGAAACAAGATTCGCTACCTTTAGCTTTA
**
12651352 ATCGGCT
64 ATCTACT
* *
12651359 CCATTTCAGCTTTAATC-AGTTCCACTGCAACACC-AGAGAAACAAGATTCGCTACCTTTAGCTT
1 CC-TTT-AGCTTTAATCTA-TTCCACTACAACGCCAAG-GAAACAAGATTCGCTACCTTTAGCTT
12651422 TAATCTACT
62 TAATCTACT
12651431 CTGCTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTTAGCTTTA
1 C--CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTTAGCTTTA
12651496 ATCT
64 ATCT
12651500 GTTCCACTAC
Statistics
Matches: 121, Mismatches: 10, Indels: 18
0.81 0.07 0.12
Matches are distributed among these distances:
70 3 0.02
71 6 0.05
72 105 0.87
73 6 0.05
74 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.13, T:0.33
Consensus pattern (70 bp):
CCTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTACCTTTAGCTTTAAT
CTACT
Found at i:12651522 original size:51 final size:51
Alignment explanation
Indices: 12651434--12651552 Score: 161
Period size: 51 Copynumber: 2.4 Consensus size: 51
12651424 ATCTACTCTG
12651434 CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTAC
1 CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTAC
* * * * *
12651485 CTTTAGCTTTAATCTGTTCCACTACCATGCCAGGGAAATAAGATTCGCTA-
1 CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTAC
*
12651535 -TTGTAGCTTCAATCTATT
1 CTT-TAGCTTTAATCTATT
12651553 TAACTGCAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
49 2 0.03
50 13 0.22
51 45 0.75
ACGTcount: A:0.29, C:0.24, G:0.13, T:0.33
Consensus pattern (51 bp):
CTTTAGCTTTAATCTATTCCACTACAACGCCAAGGAAACAAGATTCGCTAC
Found at i:12651578 original size:50 final size:50
Alignment explanation
Indices: 12651515--12651799 Score: 331
Period size: 50 Copynumber: 5.7 Consensus size: 50
12651505 ACTACCATGC
** *
12651515 CAGGGAAATAAGATTCGCTATTGTAGCTTCAATCTATTTAACTGCAATGT
1 CAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGT
* * * ** * *
12651565 C-GGTGAAGCAAGATTCACTGTTGTAGCTTCAATTTGTTCCACTACACTG-
1 CAGG-GAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGT
* *
12651614 CTAGTGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGT
1 C-AGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGT
* * ** * ** *
12651665 CAGGGAAGCAAGATTCGTTGTTGTAGCTTCAATCTGTTCCACTACACCGC
1 CAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGT
* *
12651715 CAGAGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGT
1 CAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGT
*
12651765 CAGGGAAGCAAGATTCGCTATTGTAGCTTCAATCT
1 CAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCT
12651800 GTTCCGCTGC
Statistics
Matches: 189, Mismatches: 42, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
49 3 0.02
50 184 0.97
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.20, T:0.33
Consensus pattern (50 bp):
CAGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTATTTAACTGCAATGT
Found at i:12651627 original size:100 final size:100
Alignment explanation
Indices: 12651488--12651804 Score: 503
Period size: 100 Copynumber: 3.2 Consensus size: 100
12651478 TCGCTACCTT
* * * *
12651488 TAGCTTTAATCTGTTCCACTAC-CATGCCAGGGAAATAAGATTCGCTATTGTAGCTTCAATCTAT
1 TAGCTTCAATCTGTTCCACTACAC-TGCCAGAGAAGTAAGATTCGCTGTTGTAGCTTCAATCTAT
*
12651552 TTAACTGCAATGTC-GGTGAAGCAAGATTCACTGTTG
65 TTAACTGCAATGTCAGG-GAAGCAAGATTCGCTGTTG
* * *
12651588 TAGCTTCAATTTGTTCCACTACACTGCTAGTGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATT
1 TAGCTTCAATCTGTTCCACTACACTGCCAGAGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATT
*
12651653 TAACTGCAATGTCAGGGAAGCAAGATTCGTTGTTG
66 TAACTGCAATGTCAGGGAAGCAAGATTCGCTGTTG
*
12651688 TAGCTTCAATCTGTTCCACTACACCGCCAGAGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATT
1 TAGCTTCAATCTGTTCCACTACACTGCCAGAGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATT
*
12651753 TAACTGCAATGTCAGGGAAGCAAGATTCGCTATTG
66 TAACTGCAATGTCAGGGAAGCAAGATTCGCTGTTG
12651788 TAGCTTCAATCTGTTCC
1 TAGCTTCAATCTGTTCC
12651805 GCTGCGACTT
Statistics
Matches: 201, Mismatches: 14, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
100 198 0.99
101 3 0.01
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (100 bp):
TAGCTTCAATCTGTTCCACTACACTGCCAGAGAAGTAAGATTCGCTGTTGTAGCTTCAATCTATT
TAACTGCAATGTCAGGGAAGCAAGATTCGCTGTTG
Found at i:12653072 original size:18 final size:18
Alignment explanation
Indices: 12653049--12653104 Score: 69
Period size: 18 Copynumber: 3.1 Consensus size: 18
12653039 GGCCTCTCCT
12653049 TTTTCTTTTTCTTTTTTC
1 TTTTCTTTTTCTTTTTTC
* *
12653067 TTTTCTTCTTCTTCTTTC
1 TTTTCTTTTTCTTTTTTC
*
12653085 -TTTCTTTCTTATTTTTTC
1 TTTTCTTT-TTCTTTTTTC
12653103 TT
1 TT
12653105 ATTTTTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
17 6 0.19
18 24 0.77
19 1 0.03
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTCTTTTTCTTTTTTC
Found at i:12653081 original size:21 final size:22
Alignment explanation
Indices: 12653051--12653091 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
12653041 CCTCTCCTTT
*
12653051 TTCTTTTTCTTT-TTTCTTTTC
1 TTCTTCTTCTTTCTTTCTTTTC
12653072 TTCTTCTTCTTTCTTTCTTT
1 TTCTTCTTCTTTCTTTCTTT
12653092 CTTATTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (22 bp):
TTCTTCTTCTTTCTTTCTTTTC
Found at i:12653092 original size:21 final size:20
Alignment explanation
Indices: 12653047--12653094 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
12653037 TTGGCCTCTC
*
12653047 CTTT-TTCTTTTTCTTTTTT
1 CTTTCTTCTTCTTCTTTTTT
12653066 CTTTTCTTCTTCTTCTTTCTTT
1 C-TTTCTTCTTCTTCTTT-TTT
12653088 CTTTCTT
1 CTTTCTT
12653095 ATTTTTTCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 1 0.04
20 3 0.12
21 17 0.68
22 4 0.16
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (20 bp):
CTTTCTTCTTCTTCTTTTTT
Found at i:12653109 original size:8 final size:7
Alignment explanation
Indices: 12653048--12653109 Score: 56
Period size: 7 Copynumber: 8.7 Consensus size: 7
12653038 TGGCCTCTCC
12653048 TTTTTC-
1 TTTTTCT
12653054 TTTTTCT
1 TTTTTCT
12653061 TTTTTCT
1 TTTTTCT
12653068 TTTCTTC-
1 TTT-TTCT
*
12653075 TTCTTCT
1 TTTTTCT
12653082 TTCTTTCT
1 TT-TTTCT
* *
12653090 TTCTTAT
1 TTTTTCT
12653097 TTTTTCT
1 TTTTTCT
12653104 TATTTT
1 T-TTTT
12653110 TTAAATATTT
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
6 9 0.20
7 23 0.51
8 13 0.29
ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTCT
Found at i:12658395 original size:71 final size:71
Alignment explanation
Indices: 12658279--12658420 Score: 221
Period size: 71 Copynumber: 2.0 Consensus size: 71
12658269 TCTCAGATTT
* * * * * *
12658279 AAAAAAGGGATCATGCCCAGTAAGTTATGACACGATCTTTTCTTAATTCTCGAGATCGTTTAAAA
1 AAAAAAAGGATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCATTTAAAA
12658344 CTTGAG
66 CTTGAG
*
12658350 AAAAAAAGGATCATGCCCAATAAGTTAGGACAGGATCTCTTCTTAATTCCCGAGATCATTTAAAA
1 AAAAAAAGGATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCATTTAAAA
12658415 CTTGAG
66 CTTGAG
12658421 TTTGAAAAGA
Statistics
Matches: 64, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 64 1.00
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.29
Consensus pattern (71 bp):
AAAAAAAGGATCATGCCCAATAAGTTAGGACACGATCTCTTCTTAATTCCCGAGATCATTTAAAA
CTTGAG
Found at i:12658905 original size:25 final size:26
Alignment explanation
Indices: 12658875--12658928 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
12658865 AACACATATA
*
12658875 TATGTATATATATAAATTAT-AAATG
1 TATGTACATATATAAATTATAAAATG
* **
12658900 TATGTACATCTATGTATTATAAAATG
1 TATGTACATATATAAATTATAAAATG
12658926 TAT
1 TAT
12658929 ATAAGTATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (26 bp):
TATGTACATATATAAATTATAAAATG
Found at i:12664368 original size:14 final size:14
Alignment explanation
Indices: 12664349--12664389 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
12664339 ATAGTTTCCA
*
12664349 GTTTAGAATTTATT
1 GTTTAGGATTTATT
*
12664363 GTTTAGGATTTAAT
1 GTTTAGGATTTATT
*
12664377 GCTTAGGATTTAT
1 GTTTAGGATTTAT
12664390 ATTGAATTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.27, C:0.02, G:0.20, T:0.51
Consensus pattern (14 bp):
GTTTAGGATTTATT
Found at i:12667751 original size:39 final size:39
Alignment explanation
Indices: 12667663--12667844 Score: 168
Period size: 39 Copynumber: 4.7 Consensus size: 39
12667653 CATATTCACT
* * * *
12667663 TTTAAGCATATATC-CTATTACACATATAATCACCTAACA
1 TTTAAGCATATATCAC-AATACTCAAATAATCACATAACA
*** *
12667702 TACCATCATATATCACAATACTCAAATAATCACATAACA
1 TTTAAGCATATATCACAATACTCAAATAATCACATAACA
** * *
12667741 TTTAAGCATATATCACAATACTCGCATACTCGCATAACA
1 TTTAAGCATATATCACAATACTCAAATAATCACATAACA
* ** *
12667780 TTTAAGCATATATCATAATACTCGTATAATCGCATAACA
1 TTTAAGCATATATCACAATACTCAAATAATCACATAACA
* * * *
12667819 TTCAAGAATATATCCCAATATTCAAA
1 TTTAAGCATATATCACAATACTCAAA
12667845 AACATATTTA
Statistics
Matches: 116, Mismatches: 26, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
39 115 0.99
40 1 0.01
ACGTcount: A:0.43, C:0.23, G:0.04, T:0.30
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCAAATAATCACATAACA
Found at i:12672636 original size:26 final size:26
Alignment explanation
Indices: 12672580--12672653 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 26
12672570 TTTCTCACCC
** * *
12672580 CAATTTTACCCC-AGTAAGATTTTGA
1 CAATTTTACCCCTAAAAAAATTTTAA
12672605 CAATTTTACCCCTAAAAAAATTTTAA
1 CAATTTTACCCCTAAAAAAATTTTAA
* * *
12672631 CGATTTTACCCCTGATAAAATTT
1 CAATTTTACCCCTAAAAAAATTT
12672654 CAAGAAAATC
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 12 0.29
26 29 0.71
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.36
Consensus pattern (26 bp):
CAATTTTACCCCTAAAAAAATTTTAA
Found at i:12672781 original size:36 final size:36
Alignment explanation
Indices: 12672741--12672814 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
12672731 AAACAGTCCA
12672741 AAAACATAAACTCATTCTTCCATCATTTTTTTAAGT
1 AAAACATAAACTCATTCTTCCATCATTTTTTTAAGT
12672777 AAAACATAAACTCATTCTTCCATCATTTTTTTAAGT
1 AAAACATAAACTCATTCTTCCATCATTTTTTTAAGT
12672813 AA
1 AA
12672815 TCATATATAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.38, C:0.19, G:0.03, T:0.41
Consensus pattern (36 bp):
AAAACATAAACTCATTCTTCCATCATTTTTTTAAGT
Found at i:12674071 original size:19 final size:19
Alignment explanation
Indices: 12674043--12674097 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
12674033 TTAATACTAC
*
12674043 CAAAAGCTGACAAACAAAA
1 CAAAAACTGACAAACAAAA
12674062 CAAAAACTGACAAACAAAA
1 CAAAAACTGACAAACAAAA
*
12674081 CAAAAACT-AAAAACAAA
1 CAAAAACTGACAAACAAA
12674098 GTCTAAAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
18 8 0.24
19 26 0.76
ACGTcount: A:0.69, C:0.20, G:0.05, T:0.05
Consensus pattern (19 bp):
CAAAAACTGACAAACAAAA
Found at i:12686682 original size:20 final size:20
Alignment explanation
Indices: 12686659--12686708 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
12686649 CATGGACACT
12686659 GAAGTGTATACAGAGGCACC
1 GAAGTGTATACAGAGGCACC
* *
12686679 GAAGTGCAAACAGAGGCACC
1 GAAGTGTATACAGAGGCACC
12686699 GAAGTGTATA
1 GAAGTGTATA
12686709 TCCCGTACAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.38, C:0.18, G:0.30, T:0.14
Consensus pattern (20 bp):
GAAGTGTATACAGAGGCACC
Found at i:12699114 original size:11 final size:11
Alignment explanation
Indices: 12699098--12699173 Score: 52
Period size: 11 Copynumber: 6.8 Consensus size: 11
12699088 CTTAATCACT
12699098 TTAATATTAAA
1 TTAATATTAAA
12699109 TTAATA--AAA
1 TTAATATTAAA
*
12699118 -TACTATTAAA
1 TTAATATTAAA
*
12699128 ATAAGTATTAAA
1 TTAA-TATTAAA
12699140 TTAA-ATTTAATA
1 TTAATA-TTAA-A
12699152 TTAAACTATTAAA
1 TT-AA-TATTAAA
*
12699165 ATAATATTA
1 TTAATATTA
12699174 TTTTTGGAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 18
0.70 0.05 0.24
Matches are distributed among these distances:
8 4 0.08
9 3 0.06
10 4 0.08
11 17 0.33
12 15 0.29
13 4 0.08
14 4 0.08
15 1 0.02
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (11 bp):
TTAATATTAAA
Found at i:12699160 original size:37 final size:36
Alignment explanation
Indices: 12699098--12699173 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 36
12699088 CTTAATCACT
12699098 TTAATATTAAATTAATAAAATACTATTAAAATAAGTA
1 TTAATATTAAATTAATAAAATACTATTAAAATAA-TA
*
12699135 TTAA-ATTAAATTTAATATTAA-ACTATTAAAATAATA
1 TTAATATTAAA-TTAATA-AAATACTATTAAAATAATA
12699171 TTA
1 TTA
12699174 TTTTTGGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
36 11 0.31
37 23 0.64
38 2 0.06
ACGTcount: A:0.55, C:0.03, G:0.01, T:0.41
Consensus pattern (36 bp):
TTAATATTAAATTAATAAAATACTATTAAAATAATA
Found at i:12699622 original size:19 final size:19
Alignment explanation
Indices: 12699586--12699625 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
12699576 AAAATATCAT
*
12699586 ATTAATTTTAATTGATTTG
1 ATTAATTTTAATTCATTTG
12699605 ATTAA-TTTAATTTCATTTG
1 ATTAATTTTAA-TTCATTTG
12699624 AT
1 AT
12699626 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.03, G:0.07, T:0.57
Consensus pattern (19 bp):
ATTAATTTTAATTCATTTG
Found at i:12700682 original size:39 final size:39
Alignment explanation
Indices: 12700606--12700683 Score: 102
Period size: 40 Copynumber: 2.0 Consensus size: 39
12700596 ACTAAAGATC
* *
12700606 GAGCATTAGCGGCGTGTTTAGAAAAACGCTGCAAAAAAT
1 GAGCATTAGCGGCGTGTTTAGAAAAAAGCCGCAAAAAAT
* * *
12700645 GAGCATTAGCGGCATTTTTTGGAAAAAAGCCGCAAAAAA
1 GAGCATTAGCGGC-GTGTTTAGAAAAAAGCCGCAAAAAA
12700684 CTAAAGCCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
39 13 0.39
40 20 0.61
ACGTcount: A:0.40, C:0.15, G:0.24, T:0.21
Consensus pattern (39 bp):
GAGCATTAGCGGCGTGTTTAGAAAAAAGCCGCAAAAAAT
Found at i:12700794 original size:41 final size:41
Alignment explanation
Indices: 12700715--12701039 Score: 325
Period size: 41 Copynumber: 7.9 Consensus size: 41
12700705 TTCTTACCTT
* ** * *
12700715 TCGGGGCTTTAGCGGCATTTTCAAAAAAGCGCCACTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGC
* * *
12700756 TCGGGGCTTTCGCGGCGTTTTTGAGAATGCACCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGC
* *
12700797 TCTGGGCTTTAGCGGCGTTTTTG-GAAAAGCGCCTCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAG-AAAGCGCCGCTAATGC
* *
12700838 TCAGGGTTTTAGCGGCGTTTTTG-GAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAG-AAAGCGCCGCTAATGC
** * * * * *
12700879 TTTGTGTTTTAGCGGCGTTTTTTAAAAAGCGCAGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGC
* * * * *
12700920 TCTGTGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGC
1 TCGGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGC
* *
12700961 T-GGAGGCTTTAGCAGCATTTTTG-GAACAGCGCCGCTAATGC
1 TCGG-GGCTTTAGCGGCGTTTTTGAGAA-AGCGCCGCTAATGC
* * *
12701002 TAGGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAA
1 TCGGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAA
12701040 AAACATTTTA
Statistics
Matches: 243, Mismatches: 35, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
40 4 0.02
41 235 0.97
42 4 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (41 bp):
TCGGGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGC
Found at i:12700855 original size:82 final size:81
Alignment explanation
Indices: 12700718--12701039 Score: 376
Period size: 82 Copynumber: 3.9 Consensus size: 81
12700708 TTACCTTTCG
** * * * * *
12700718 GGGCTTTAGCGGCATTTTCAAAAAAGCGCCACTAATGCTCGGGGCTTTCGCGGCGTTTTTGAGAA
1 GGGCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTGAAAA
* *
12700783 TGCACCGCTAATGCTCT
66 AGCGCCGCTAATGCT-T
* * * *
12700800 GGGCTTTAGCGGCGTTTTTGGAAAAGCGCCTCTAATGCTCAGGGTTTTAGCGGCGTTTTTGGAAA
1 GGGCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTGAAAA
12700865 AGCGCCGCTAATGCTTT
66 AGCGCCGCTAATGC-TT
* * * * * * * *
12700882 GTGTTTTAGCGGCGTTTTTTAAAAAGCGCAGCTAATGCTCTGTGTTTTAGCGGCGTTTTTTAAAA
1 GGGCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTGAAAA
*
12700947 AGCGCCGCTAATGCTG
66 AGCGCCGCTAATGCTT
* * *
12700963 GAGGCTTTAGCAGCATTTTTGGAACAGCGCCGCTAATGCT-AGGGTCTTTAGCGGCGTTTTTGAA
1 G-GGCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGGGT-TTTAGCGGCGTTTTTGAA
12701027 AAAGCGCCGCTAA
64 AAAGCGCCGCTAA
12701040 AAACATTTTA
Statistics
Matches: 203, Mismatches: 34, Indels: 6
0.84 0.14 0.02
Matches are distributed among these distances:
81 5 0.02
82 197 0.97
83 1 0.00
ACGTcount: A:0.21, C:0.20, G:0.28, T:0.31
Consensus pattern (81 bp):
GGGCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGCTCAGGGTTTTAGCGGCGTTTTTGAAAA
AGCGCCGCTAATGCTT
Found at i:12700941 original size:123 final size:123
Alignment explanation
Indices: 12700719--12701039 Score: 376
Period size: 123 Copynumber: 2.6 Consensus size: 123
12700709 TACCTTTCGG
* *** * ** * * * *
12700719 GGCTTTAGCGGCATTTTCAAAAAAGCGCCACTAATGCTCGGGGCTTTCGCGGCGTTTTTGAGAAT
1 GGCTTTAGCAGCATTTTTGGAAAAGCGCCGCTAATGCTTAGGGTTTTAGCGGCGTTTTTGAAAAA
* * *
12700784 GCACCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCTCTAATGCTCAG-
66 GCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT-AGA
* * * * * *
12700842 GGTTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTTTGTGTTTTAGCGGCGTTTTTTAAAAA
1 GGCTTTAGCAGCATTTTTGGAAAAGCGCCGCTAATGCTTAGGGTTTTAGCGGCGTTTTTGAAAAA
* * * * *
12700907 GCGCAGCTAATGCTCTGTGTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTGGA
66 GCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAGA
*
12700965 GGCTTTAGCAGCATTTTTGGAACAGCGCCGCTAATGC-TAGGGTCTTTAGCGGCGTTTTTGAAAA
1 GGCTTTAGCAGCATTTTTGGAAAAGCGCCGCTAATGCTTAGGGT-TTTAGCGGCGTTTTTGAAAA
12701029 AGCGCCGCTAA
65 AGCGCCGCTAA
12701040 AAACATTTTA
Statistics
Matches: 166, Mismatches: 30, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
122 5 0.03
123 161 0.97
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.31
Consensus pattern (123 bp):
GGCTTTAGCAGCATTTTTGGAAAAGCGCCGCTAATGCTTAGGGTTTTAGCGGCGTTTTTGAAAAA
GCGCCGCTAATGCTCTGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTAGA
Found at i:12701423 original size:14 final size:14
Alignment explanation
Indices: 12701404--12701430 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
12701394 GAGTATGGGT
12701404 TTAGGGATTATGGA
1 TTAGGGATTATGGA
12701418 TTAGGGATTATGG
1 TTAGGGATTATGG
12701431 TTCAAGGGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (14 bp):
TTAGGGATTATGGA
Found at i:12701458 original size:35 final size:33
Alignment explanation
Indices: 12701407--12701533 Score: 96
Period size: 35 Copynumber: 3.7 Consensus size: 33
12701397 TATGGGTTTA
* *
12701407 GGGATTATGGATTAGGGATTATGGTTCAAGGGTT
1 GGGATTAAGGTTTAGGGATTA-GGTTCAAGGGTT
*
12701441 GGGATTTAAGGTTTAGGGGTTAGACGTT-AAGGGTT
1 GGGA-TTAAGGTTTAGGGATTAG--GTTCAAGGGTT
** *
12701476 AAGAGTTAAGGATTTAGGGTTTAAGGATTCAAGGGTT
1 GGGA-TTAAGG-TTTAGGGATT-AGG-TTCAAGGGTT
* *
12701513 GGG-TTAAGGTTTTGGGTTTAG
1 GGGATTAAGGTTTAGGGATTAG
12701534 ATTAATTATT
Statistics
Matches: 76, Mismatches: 10, Indels: 15
0.75 0.10 0.15
Matches are distributed among these distances:
33 2 0.03
34 14 0.18
35 36 0.47
36 14 0.18
37 10 0.13
ACGTcount: A:0.24, C:0.02, G:0.38, T:0.35
Consensus pattern (33 bp):
GGGATTAAGGTTTAGGGATTAGGTTCAAGGGTT
Found at i:12701744 original size:21 final size:21
Alignment explanation
Indices: 12701692--12701744 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
12701682 GAGTATGGAT
*
12701692 TTAGGGATTATGGTTTAAGGG
1 TTAGGGATTAAGGTTTAAGGG
*
12701713 TT-GGGATTTAAGGTTTAGGGG
1 TTAGGGA-TTAAGGTTTAAGGG
*
12701734 TTAGGGGTTAA
1 TTAGGGATTAA
12701745 ACATTAGGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 4 0.15
21 20 0.74
22 3 0.11
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.38
Consensus pattern (21 bp):
TTAGGGATTAAGGTTTAAGGG
Found at i:12701784 original size:8 final size:8
Alignment explanation
Indices: 12701762--12701790 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
12701752 GGGTTAAGAG
12701762 TTAGGGAT
1 TTAGGGAT
12701770 TTA-GGAT
1 TTAGGGAT
12701777 TTAGGGAT
1 TTAGGGAT
12701785 TTAGGG
1 TTAGGG
12701791 GTCGAGTTAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
7 7 0.35
8 13 0.65
ACGTcount: A:0.24, C:0.00, G:0.38, T:0.38
Consensus pattern (8 bp):
TTAGGGAT
Found at i:12702252 original size:40 final size:40
Alignment explanation
Indices: 12702208--12702358 Score: 223
Period size: 40 Copynumber: 3.8 Consensus size: 40
12702198 AAAATAAAAG
*
12702208 GCATTAGCGGCGCTTTTTAAAAAACGACGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGA
12702248 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGA
1 GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGA
* **
12702288 GCATTAGCGGCGCTTCTTAAAAAAACGCCGCTATAGATTTA
1 GCATTAGCGGCGCTT-TTTAAAAAACGCCGCTATAGATCGA
* *
12702329 ACTTTAGCGGCGCTATTTT-AAAAACGCCGC
1 GCATTAGCGGCGCT-TTTTAAAAAACGCCGC
12702359 AAAAAATAAG
Statistics
Matches: 102, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
40 65 0.64
41 36 0.35
42 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (40 bp):
GCATTAGCGGCGCTTTTTAAAAAACGCCGCTATAGATCGA
Found at i:12702325 original size:81 final size:80
Alignment explanation
Indices: 12702208--12702358 Score: 223
Period size: 81 Copynumber: 1.9 Consensus size: 80
12702198 AAAATAAAAG
* *
12702208 GCATTAGCGGCGCTTTTTAAAAAACGACGCTATAGATCGAGCATTAGCGGCGCT-TTTTAAAAAA
1 GCATTAGCGGCGCTTTTAAAAAAACGACGCTATAGATCGAACATTAGCGGCGCTATTTT-AAAAA
12702272 CGCCGCTATAGATCGA
65 CGCCGCTATAGATCGA
* ** *
12702288 GCATTAGCGGCGCTTCTTAAAAAAACGCCGCTATAGATTTAACTTTAGCGGCGCTATTTTAAAAA
1 GCATTAGCGGCGCTT-TTAAAAAAACGACGCTATAGATCGAACATTAGCGGCGCTATTTTAAAAA
12702353 CGCCGC
65 CGCCGC
12702359 AAAAAATAAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 15 0.24
81 44 0.70
82 4 0.06
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (80 bp):
GCATTAGCGGCGCTTTTAAAAAAACGACGCTATAGATCGAACATTAGCGGCGCTATTTTAAAAAC
GCCGCTATAGATCGA
Found at i:12704488 original size:23 final size:23
Alignment explanation
Indices: 12704461--12704534 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
12704451 ATTGCTTCCA
*
12704461 TTTTTTTCATTACATATTAAGCC
1 TTTTTATCATTACATATTAAGCC
** * * * *
12704484 TTTTTCA-CAAAAAAAATGATGGCC
1 TTTTT-ATCATTACATATTAAG-CC
12704508 TTTTTATCATTACATATTAAGCC
1 TTTTTATCATTACATATTAAGCC
12704531 TTTT
1 TTTT
12704535 CTACATCTGA
Statistics
Matches: 35, Mismatches: 13, Indels: 6
0.65 0.24 0.11
Matches are distributed among these distances:
23 20 0.57
24 15 0.43
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.46
Consensus pattern (23 bp):
TTTTTATCATTACATATTAAGCC
Found at i:12705622 original size:42 final size:42
Alignment explanation
Indices: 12705554--12705690 Score: 145
Period size: 42 Copynumber: 3.3 Consensus size: 42
12705544 TAAAAGCATG
* *
12705554 TTTTTAGCGGTGTTTGTGAA-A-AAGCGTCGCTAAAAGTCAT-
1 TTTTTAGCGGCGTTTGT-AATAGAAGCGTCGCTAAAGGTCATA
* **
12705594 TTTTATAGTGGCGTTTGTAATAGAAGCGTCGCTAAAGGTTGTA
1 TTTT-TAGCGGCGTTTGTAATAGAAGCGTCGCTAAAGGTCATA
* * *
12705637 TTTTTAGCGGCGTTTGTAGTAGAAGCGCCTCTAAAGGTCATGA
1 TTTTTAGCGGCGTTTGTAATAGAAGCGTCGCTAAAGGTCAT-A
*
12705680 TCTTTAGCGGC
1 TTTTTAGCGGC
12705691 ATTTCTGGCA
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
40 6 0.08
41 12 0.15
42 47 0.59
43 15 0.19
ACGTcount: A:0.24, C:0.14, G:0.27, T:0.35
Consensus pattern (42 bp):
TTTTTAGCGGCGTTTGTAATAGAAGCGTCGCTAAAGGTCATA
Found at i:12707710 original size:24 final size:23
Alignment explanation
Indices: 12707666--12707719 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
12707656 AGTTATCTAT
12707666 AAATCA-A-ATTTCTAAGATTAC
1 AAATCATATATTTCTAAGATTAC
12707687 AAAATCATATATTT-TAAGATTTAC
1 -AAATCATATATTTCTAAGA-TTAC
*
12707711 ATATCATAT
1 AAATCATAT
12707720 CTAGGATTGC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 6 0.21
23 14 0.50
24 8 0.29
ACGTcount: A:0.46, C:0.11, G:0.04, T:0.39
Consensus pattern (23 bp):
AAATCATATATTTCTAAGATTAC
Found at i:12713546 original size:20 final size:20
Alignment explanation
Indices: 12713521--12713571 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
12713511 TTATTTTTTG
12713521 AAAGTTGAGTGGCTGAATTT
1 AAAGTTGAGTGGCTGAATTT
12713541 AAAGTTGAGTGGCTGAATTT
1 AAAGTTGAGTGGCTGAATTT
12713561 AAAGTTGAGTG
1 AAAGTTGAGTG
12713572 ATTATTTTGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.33
Consensus pattern (20 bp):
AAAGTTGAGTGGCTGAATTT
Found at i:12717001 original size:28 final size:29
Alignment explanation
Indices: 12716942--12717002 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
12716932 AAAAAACCCT
*
12716942 TTTTTTCAATATTTACCGAAATGGGCCGA
1 TTTTTTCAATATTTACCGAAATGAGCCGA
*
12716971 TTTTTT-AATTATTTATCGAAATGAGCC-A
1 TTTTTTCAA-TATTTACCGAAATGAGCCGA
12716999 TTTT
1 TTTT
12717003 CCGCGAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (29 bp):
TTTTTTCAATATTTACCGAAATGAGCCGA
Found at i:12725330 original size:13 final size:13
Alignment explanation
Indices: 12725312--12725337 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12725302 GTCATGCAAT
12725312 ACATAATAAAAAA
1 ACATAATAAAAAA
12725325 ACATAATAAAAAA
1 ACATAATAAAAAA
12725338 GTGGCCTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.08, G:0.00, T:0.15
Consensus pattern (13 bp):
ACATAATAAAAAA
Found at i:12729066 original size:3 final size:3
Alignment explanation
Indices: 12729048--12729082 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
12729038 AGGGAAGCGA
*
12729048 AAG ACG AAG AAAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG -AAG AAG AAG AAG AAG AAG AAG AAG A
12729083 GCGATCCAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.66, C:0.03, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:12729926 original size:125 final size:125
Alignment explanation
Indices: 12729578--12729947 Score: 584
Period size: 125 Copynumber: 3.0 Consensus size: 125
12729568 TTTTAGGTTC
*** * * * *
12729578 TGGAAGAAATAATTTCGAGTTGACATTTCTGATCAAACAGTATAAAATCGCTTCTAGCAGGATGT
1 TGGAAGAAATAATTT-TTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGC
*
12729643 TATTTGAGAAGAATTTGTG-AAATCGCGCCCTCGTGGACTCGCTTTTGCTACAGTAGGTCA
65 TATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCA
12729703 TGGAAGAAAT-ATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCT
1 TGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCT
*
12729767 ATTTTGAGAAGAATTTGT-AAAATCGCACCCTCGTGGACACGCTTTTGCTACAGTAGGTCA
66 A-TTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCA
*
12729827 TGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATACTATAAAATCGCTTCTAGCAGGATGCT
1 TGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCT
* **
12729892 ATTTGAGAAGAATTTGTGAAAATCGCGCCTTCGTGGACGTGCTTTTGCTACAGTAG
66 ATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAG
12729948 CATGTTTAGG
Statistics
Matches: 227, Mismatches: 14, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
123 44 0.19
124 85 0.37
125 98 0.43
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (125 bp):
TGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGCAGGATGCT
ATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAGTAGGTCA
Found at i:12734607 original size:7 final size:7
Alignment explanation
Indices: 12734597--12734621 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
12734587 TTATATACAT
12734597 AATACTA
1 AATACTA
12734604 AATACTA
1 AATACTA
12734611 AATACTA
1 AATACTA
12734618 AATA
1 AATA
12734622 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:12734829 original size:20 final size:20
Alignment explanation
Indices: 12734792--12734829 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
12734782 TTTATTTTTA
*
12734792 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
12734812 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
12734830 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:12735746 original size:12 final size:12
Alignment explanation
Indices: 12735722--12735764 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
12735712 ATTTTTACGG
12735722 TTTAAAAAA-AT
1 TTTAAAAAATAT
12735733 TTTAAAAAATAT
1 TTTAAAAAATAT
* *
12735745 TTTTAAAATTA-
1 TTTAAAAAATAT
12735756 TTTAAAAAA
1 TTTAAAAAA
12735765 AAGGAGTTAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 16 0.59
12 11 0.41
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TTTAAAAAATAT
Found at i:12735877 original size:14 final size:11
Alignment explanation
Indices: 12735834--12735867 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
12735824 AAGAGAATTT
12735834 TTGA-AGGAAA
1 TTGAGAGGAAA
12735844 TTGAGAGGAAA
1 TTGAGAGGAAA
12735855 TTGAGAGGAAA
1 TTGAGAGGAAA
12735866 TT
1 TT
12735868 TGATAGAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 4 0.17
11 19 0.83
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:12741365 original size:28 final size:28
Alignment explanation
Indices: 12741322--12741387 Score: 114
Period size: 28 Copynumber: 2.4 Consensus size: 28
12741312 ATGGTTTTTC
*
12741322 CAGAAAAGTGTGAGCGTTCTCCCTGAAG
1 CAGAAAAGTGTAAGCGTTCTCCCTGAAG
*
12741350 CAGAAAAGTGTAAGCGTTCTTCCTGAAG
1 CAGAAAAGTGTAAGCGTTCTCCCTGAAG
12741378 CAGAAAAGTG
1 CAGAAAAGTG
12741388 ATGTGCTTTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.33, C:0.18, G:0.27, T:0.21
Consensus pattern (28 bp):
CAGAAAAGTGTAAGCGTTCTCCCTGAAG
Found at i:12751156 original size:24 final size:24
Alignment explanation
Indices: 12751122--12751169 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
12751112 TTTATTGCAA
*
12751122 TATTCAATGGCTTGACTACAACAT
1 TATTCAATGGCTTGACCACAACAT
*
12751146 TATTCAGTGGCTTGACCACAACAT
1 TATTCAATGGCTTGACCACAACAT
12751170 GCCACTTGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (24 bp):
TATTCAATGGCTTGACCACAACAT
Found at i:12753359 original size:9 final size:9
Alignment explanation
Indices: 12753343--12753394 Score: 86
Period size: 9 Copynumber: 5.8 Consensus size: 9
12753333 GGTATTTTTC
12753343 GGTAATTCG
1 GGTAATTCG
*
12753352 GTTAATTCG
1 GGTAATTCG
*
12753361 GTTAATTCG
1 GGTAATTCG
12753370 GGTAATTCG
1 GGTAATTCG
12753379 GGTAATTCG
1 GGTAATTCG
12753388 GGTAATT
1 GGTAATT
12753395 TTTAACCAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 41 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:12753513 original size:27 final size:27
Alignment explanation
Indices: 12753456--12753513 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
12753446 CTTATTAACC
** *
12753456 AAAAAAATTTCGGTTCGGTTAAATTTA
1 AAAAAAAAATCGGTTCGGTTAAAGTTA
*
12753483 AAAAAAAAATCGGTTCGGTTAACGGTTA
1 AAAAAAAAATCGGTTCGGTTAA-AGTTA
12753511 AAA
1 AAA
12753514 TTTTTGGAAG
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.45, C:0.09, G:0.17, T:0.29
Consensus pattern (27 bp):
AAAAAAAAATCGGTTCGGTTAAAGTTA
Found at i:12753569 original size:12 final size:12
Alignment explanation
Indices: 12753552--12753576 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12753542 AGTAATTTCG
12753552 GGTCGGTTAACC
1 GGTCGGTTAACC
12753564 GGTCGGTTAACC
1 GGTCGGTTAACC
12753576 G
1 G
12753577 AATGAACACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.36, T:0.24
Consensus pattern (12 bp):
GGTCGGTTAACC
Found at i:12754635 original size:13 final size:13
Alignment explanation
Indices: 12754617--12754693 Score: 64
Period size: 13 Copynumber: 5.9 Consensus size: 13
12754607 AGTTCTTCAT
12754617 TGCTTTTAAAAAG
1 TGCTTTTAAAAAG
* *
12754630 TGCTTTTGAGAAG
1 TGCTTTTAAAAAG
* **
12754643 TGCTGTGGAAAAG
1 TGCTTTTAAAAAG
* * *
12754656 TACTTTTTAGAAG
1 TGCTTTTAAAAAG
* *
12754669 TGCTTTTAAGAGG
1 TGCTTTTAAAAAG
12754682 TGCTTTTAAAAA
1 TGCTTTTAAAAA
12754694 TTTTGAGTGT
Statistics
Matches: 49, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
13 49 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TGCTTTTAAAAAG
Found at i:12754687 original size:26 final size:25
Alignment explanation
Indices: 12754617--12754688 Score: 72
Period size: 26 Copynumber: 2.8 Consensus size: 25
12754607 AGTTCTTCAT
12754617 TGCTTTTAAAAAGTGCTTTTGAGAAG
1 TGCTTTT-AAAAGTGCTTTTGAGAAG
** * *
12754643 TGCTGTGGAAAAGTACTTTTTAGAAG
1 TGCT-TTTAAAAGTGCTTTTGAGAAG
*
12754669 TGCTTTTAAGAGGTGCTTTT
1 TGCTTTTAA-AAGTGCTTTT
12754689 AAAAATTTTG
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
25 3 0.08
26 32 0.89
27 1 0.03
ACGTcount: A:0.26, C:0.08, G:0.25, T:0.40
Consensus pattern (25 bp):
TGCTTTTAAAAGTGCTTTTGAGAAG
Found at i:12755182 original size:15 final size:15
Alignment explanation
Indices: 12755162--12755256 Score: 126
Period size: 15 Copynumber: 6.5 Consensus size: 15
12755152 TGTTAATTCC
12755162 ATTTATGTAATTAAT
1 ATTTATGTAATTAAT
12755177 ATTTATGTAATT-AT
1 ATTTATGTAATTAAT
*
12755191 AAGTT-TGTAATTAAT
1 -ATTTATGTAATTAAT
12755206 ATTTATGTAATT-AT
1 ATTTATGTAATTAAT
*
12755220 AAGTT-TGTAATTAAT
1 -ATTTATGTAATTAAT
12755235 ATTTATGTAATTAAT
1 ATTTATGTAATTAAT
12755250 ATTTATG
1 ATTTATG
12755257 ATTTTAGTCC
Statistics
Matches: 70, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
14 24 0.34
15 46 0.66
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (15 bp):
ATTTATGTAATTAAT
Found at i:12755199 original size:29 final size:29
Alignment explanation
Indices: 12755167--12755247 Score: 162
Period size: 29 Copynumber: 2.8 Consensus size: 29
12755157 ATTCCATTTA
12755167 TGTAATTAATATTTATGTAATTATAAGTT
1 TGTAATTAATATTTATGTAATTATAAGTT
12755196 TGTAATTAATATTTATGTAATTATAAGTT
1 TGTAATTAATATTTATGTAATTATAAGTT
12755225 TGTAATTAATATTTATGTAATTA
1 TGTAATTAATATTTATGTAATTA
12755248 ATATTTATGA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 52 1.00
ACGTcount: A:0.38, C:0.00, G:0.10, T:0.52
Consensus pattern (29 bp):
TGTAATTAATATTTATGTAATTATAAGTT
Found at i:12755201 original size:14 final size:14
Alignment explanation
Indices: 12755182--12755232 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
12755172 TTAATATTTA
12755182 TGTAATTATAAGTT
1 TGTAATTATAAGTT
*
12755196 TGTAATTA-ATATTT
1 TGTAATTATA-AGTT
12755210 ATGTAATTATAAGTT
1 -TGTAATTATAAGTT
12755225 TGTAATTA
1 TGTAATTA
12755233 ATATTTATGT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 1 0.03
14 19 0.59
15 11 0.34
16 1 0.03
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (14 bp):
TGTAATTATAAGTT
Found at i:12755210 original size:44 final size:44
Alignment explanation
Indices: 12755162--12755256 Score: 124
Period size: 44 Copynumber: 2.2 Consensus size: 44
12755152 TGTTAATTCC
*
12755162 ATTTATGTAATTA-ATATTTATGTAATT-ATAAGTT-TGTAATTAAT
1 ATTTATGTAATTATA-AGTT-TGTAATTAAT-AGTTATGTAATTAAT
*
12755206 ATTTATGTAATTATAAGTTTGTAATTAATATTTATGTAATTAAT
1 ATTTATGTAATTATAAGTTTGTAATTAATAGTTATGTAATTAAT
12755250 ATTTATG
1 ATTTATG
12755257 ATTTTAGTCC
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
43 10 0.22
44 35 0.76
45 1 0.02
ACGTcount: A:0.38, C:0.00, G:0.09, T:0.53
Consensus pattern (44 bp):
ATTTATGTAATTATAAGTTTGTAATTAATAGTTATGTAATTAAT
Found at i:12756577 original size:35 final size:35
Alignment explanation
Indices: 12756537--12756605 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
12756527 ATTAATTGGG
* *
12756537 TTCAAACTCAATTA-TAAATTTAAAATTGGTGCTAA
1 TTCAAACTCAA-TAGTAAAATTAAAATTAGTGCTAA
*
12756572 TTCAAACTCAATAGTAAAATTAATATTAGTGCTA
1 TTCAAACTCAATAGTAAAATTAAAATTAGTGCTA
12756606 TTTAAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 2 0.07
35 28 0.93
ACGTcount: A:0.43, C:0.12, G:0.09, T:0.36
Consensus pattern (35 bp):
TTCAAACTCAATAGTAAAATTAAAATTAGTGCTAA
Found at i:12762533 original size:9 final size:9
Alignment explanation
Indices: 12762519--12762549 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
12762509 CTGATTACAG
12762519 TTGAAGCAT
1 TTGAAGCAT
12762528 TTGAAGCA-
1 TTGAAGCAT
12762536 TTGAAGCAT
1 TTGAAGCAT
12762545 TTGAA
1 TTGAA
12762550 ATGGCATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.35, C:0.10, G:0.23, T:0.32
Consensus pattern (9 bp):
TTGAAGCAT
Found at i:12764389 original size:18 final size:18
Alignment explanation
Indices: 12764366--12764400 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
12764356 ATTGGTTAAA
*
12764366 ATAAAAATATTTAAATTC
1 ATAAAAATAATTAAATTC
*
12764384 ATAAAACTAATTAAATT
1 ATAAAAATAATTAAATT
12764401 ATATATTTAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (18 bp):
ATAAAAATAATTAAATTC
Found at i:12764410 original size:13 final size:13
Alignment explanation
Indices: 12764394--12764434 Score: 55
Period size: 13 Copynumber: 3.2 Consensus size: 13
12764384 ATAAAACTAA
12764394 TTAAATTATATAT
1 TTAAATTATATAT
* * *
12764407 TTAATTTAAATAA
1 TTAAATTATATAT
12764420 TTAAATTATATAT
1 TTAAATTATATAT
12764433 TT
1 TT
12764435 TTATTTTTTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTAAATTATATAT
Found at i:12764724 original size:19 final size:19
Alignment explanation
Indices: 12764700--12764736 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
12764690 ATAAATTTAT
*
12764700 TTTTACATATACCTACAAA
1 TTTTACATATACCAACAAA
12764719 TTTTACATATACCAACAA
1 TTTTACATATACCAACAA
12764737 TTAATTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.43, C:0.22, G:0.00, T:0.35
Consensus pattern (19 bp):
TTTTACATATACCAACAAA
Found at i:12766888 original size:49 final size:49
Alignment explanation
Indices: 12766831--12766934 Score: 163
Period size: 49 Copynumber: 2.1 Consensus size: 49
12766821 TCATGTGTTA
* * * *
12766831 TAATTTTATACAGTGTTAAGCTTTTGATTCATGATATTGAACTTAATTT
1 TAATTTTATAAAGTGTTAACCTTTTGATTCATGATATTAAACTTAACTT
*
12766880 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAACTT
1 TAATTTTATAAAGTGTTAACCTTTTGATTCATGATATTAAACTTAACTT
12766929 TAATTT
1 TAATTT
12766935 GTTTTTTTTT
Statistics
Matches: 50, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.49
Consensus pattern (49 bp):
TAATTTTATAAAGTGTTAACCTTTTGATTCATGATATTAAACTTAACTT
Found at i:12768441 original size:18 final size:17
Alignment explanation
Indices: 12768415--12768449 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
12768405 AATATTAAGA
*
12768415 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
12768432 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
12768450 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:12768449 original size:16 final size:16
Alignment explanation
Indices: 12768415--12768468 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
12768405 AATATTAAGA
12768415 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
12768432 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
12768448 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
12768462 ATTTTAA
1 ATTTTAA
12768469 ATTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:12768563 original size:18 final size:17
Alignment explanation
Indices: 12768535--12768569 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
12768525 ATTATTAAGA
*
12768535 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
12768552 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
12768570 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:12768569 original size:16 final size:16
Alignment explanation
Indices: 12768535--12768588 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
12768525 ATTATTAAGA
12768535 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
12768552 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
12768568 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
12768582 ATTTTAA
1 ATTTTAA
12768589 ATTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:12768682 original size:18 final size:17
Alignment explanation
Indices: 12768654--12768688 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
12768644 ATTATTAAGA
*
12768654 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
12768671 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
12768689 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:12768688 original size:16 final size:16
Alignment explanation
Indices: 12768654--12768707 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 16
12768644 ATTATTAAGA
12768654 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
12768671 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
12768687 A-TTTAA-TAATAAT-T
1 ATTTTAATTAA-AATAT
12768701 ATTTTAA
1 ATTTTAA
12768708 ATTATATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
14 5 0.15
15 13 0.38
16 5 0.15
17 5 0.15
18 6 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:12768742 original size:239 final size:241
Alignment explanation
Indices: 12768317--12768769 Score: 838
Period size: 239 Copynumber: 1.9 Consensus size: 241
12768307 AATAAAGTAG
12768317 ATTATAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTT
1 ATTATAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTT
* * *
12768382 AGTAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATA
66 AGTAAATTCACACAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATA
12768447 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
131 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
*
12768512 TATAAGAAAATTTATTATTAAGAATTTTATTAAATTATATATTTTA
196 TATAAGAAAATTTAATATTAAGAATTTTATTAAATTATATATTTTA
12768558 ATTA-AAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGA-TTT
1 ATTATAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTT
*
12768621 AGTAAATTCACACAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATA
66 AGTAAATTCACACAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATA
12768686 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
131 TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
*
12768751 TATAAGAATATTTAATATT
196 TATAAGAAAATTTAATATT
12768770 TAATATTTAA
Statistics
Matches: 206, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
239 146 0.71
240 56 0.27
241 4 0.02
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (241 bp):
ATTATAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTT
AGTAAATTCACACAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTAATTAAAATA
TATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCA
TATAAGAAAATTTAATATTAAGAATTTTATTAAATTATATATTTTA
Found at i:12768769 original size:7 final size:7
Alignment explanation
Indices: 12768757--12768782 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
12768747 TTCATATAAG
12768757 AATATTT
1 AATATTT
12768764 AATATTT
1 AATATTT
12768771 AATATTT
1 AATATTT
12768778 AATAT
1 AATAT
12768783 GATTAAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
AATATTT
Found at i:12768799 original size:119 final size:120
Alignment explanation
Indices: 12768317--12768769 Score: 836
Period size: 120 Copynumber: 3.8 Consensus size: 120
12768307 AATAAAGTAG
12768317 ATTATAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTT
1 ATTA-AAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTT
*
12768382 AGTAAATTTATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTA
65 AGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTA
12768438 ATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTA
1 ATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTA
* *
12768503 GTAAATTCATATAAGAAAATTTATTATTAAGAATTTTATTAAATTATATATTTTA
66 GTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTA
12768558 ATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGA-TTTA
1 ATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTA
* * *
12768622 GTAAATTCACACAAGAATATTTATTATTAAGAATTTTATTAAATTATATATTTTA
66 GTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTA
12768677 ATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTA
1 ATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTA
12768742 GTAAATTCATATAAGAATATTTAATATT
66 GTAAATTCATATAAGAATATTTAATATT
12768770 TAATATTTAA
Statistics
Matches: 322, Mismatches: 9, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
119 116 0.36
120 202 0.63
121 4 0.01
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (120 bp):
ATTAAAATATATTTAATAATAATTATTTTAAATTATATTTTATAGTATTATATATTATGATTTTA
GTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATTATATATTTTA
Found at i:12770238 original size:27 final size:27
Alignment explanation
Indices: 12770196--12770250 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
12770186 TGATTCATGC
12770196 TTAAACTACTCAAGGATCCTTAATCAG
1 TTAAACTACTCAAGGATCCTTAATCAG
*
12770223 TTAAACTACTCGAGGATCCTTAATCAG
1 TTAAACTACTCAAGGATCCTTAATCAG
12770250 T
1 T
12770251 CATTCTTCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.35, C:0.22, G:0.13, T:0.31
Consensus pattern (27 bp):
TTAAACTACTCAAGGATCCTTAATCAG
Found at i:12773012 original size:23 final size:23
Alignment explanation
Indices: 12772964--12773028 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 23
12772954 TATTAGAAGA
* *
12772964 TTTGTAATTTTATAAAATTCCAT
1 TTTGTAATCTTATAAGATTCCAT
*
12772987 TTTGTAATCTTATAAGATT-TAGT
1 TTTGTAATCTTATAAGATTCCA-T
* *
12773010 TTTATAATCTTAGAAGATT
1 TTTGTAATCTTATAAGATT
12773029 GTGTAGATCC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
22 1 0.03
23 35 0.97
ACGTcount: A:0.34, C:0.06, G:0.09, T:0.51
Consensus pattern (23 bp):
TTTGTAATCTTATAAGATTCCAT
Found at i:12778047 original size:15 final size:15
Alignment explanation
Indices: 12778027--12778061 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
12778017 GATACTCCCT
*
12778027 CATTTGTAATCATTC
1 CATTTGTAATCATCC
12778042 CATTTGTAATCATCC
1 CATTTGTAATCATCC
12778057 CATTT
1 CATTT
12778062 TATCGTCATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.46
Consensus pattern (15 bp):
CATTTGTAATCATCC
Found at i:12779124 original size:17 final size:16
Alignment explanation
Indices: 12779109--12779141 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
12779099 AAAATAATAC
12779109 AAAT-GAAAAAAAAAT
1 AAATAGAAAAAAAAAT
12779124 AAATAG-AAAAAAAAT
1 AAATAGAAAAAAAAAT
12779139 AAA
1 AAA
12779142 AATAAAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 16 0.94
16 1 0.06
ACGTcount: A:0.82, C:0.00, G:0.06, T:0.12
Consensus pattern (16 bp):
AAATAGAAAAAAAAAT
Found at i:12779144 original size:17 final size:17
Alignment explanation
Indices: 12779099--12779145 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
12779089 ATAAACGAGC
* *
12779099 AAAATAATACAAAT-GA
1 AAAAAAATAAAAATAGA
*
12779115 AAAAAAA-ATAAATAGA
1 AAAAAAATAAAAATAGA
12779131 AAAAAAATAAAAATA
1 AAAAAAATAAAAATA
12779146 AAAGGTACAT
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 5 0.19
16 15 0.58
17 6 0.23
ACGTcount: A:0.79, C:0.02, G:0.04, T:0.15
Consensus pattern (17 bp):
AAAAAAATAAAAATAGA
Found at i:12779148 original size:15 final size:15
Alignment explanation
Indices: 12779115--12779148 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
12779105 ATACAAATGA
*
12779115 AAAAAAAATAAATAG
1 AAAAAAAATAAAAAG
*
12779130 AAAAAAAATAAAAAT
1 AAAAAAAATAAAAAG
12779145 AAAA
1 AAAA
12779149 GGTACATGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (15 bp):
AAAAAAAATAAAAAG
Found at i:12781177 original size:44 final size:44
Alignment explanation
Indices: 12780928--12781525 Score: 312
Period size: 44 Copynumber: 13.7 Consensus size: 44
12780918 CTATCTTTAA
** *
12780928 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTTATTTAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAG
* * * *
12780971 TCTGCCCCACTGCAATTTCAGGGGGATAAGACTTGCTTTCTTGAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTT-AG
* * * *
12781016 TCTGCTCCACTGCAAATTCAGGTAAATAAGACTATCGGC-T--TTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACT-T--GCTTACTTAG
* * * *
12781060 TCTGCCCCACTGCAACTTCAGGGAGATAAGATTTAC-CATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-CTT-AG
* * *
12781105 TCTGC-CTCACTACAACTTCA-AGAGGATAAGTCTTGCTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAG
* * * * * *
12781149 TCTGCTCCACTGTAACTTTAGGGAGATAAGACTAG-ATGC-GA-
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAG
* * * * *
12781190 TCTGCT-CTCTGCAACTTTAGAGAGATAAGATTTGC-CATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-CTT-AG
* **
12781234 TCTGC-CTCACTGCAACTTCA-GGAGGATAAGACATATTTACTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAG
* * **
12781278 TCTGCTCTACTGCAACTTCAGGGAGATAAGACTAG---A-TGGG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAG
* ** * ** * *
12781318 ATTTGCT-CTTTGCAACTTCAGAGAGATAAGATCCAAGGTT--TTAA
1 -TCTGCTCCACTGCAACTTCAGGGAGATAAGA--CTTGCTTACTTAG
* * * * *
12781362 TCCGCTCCACTGCAACTTCAGGGAGATAGGA-TT-ATTGGCTCTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTT-ACT-TAG
* * *
12781406 TCTACTCCACTGCAACTTCAGGGAGATAAGATTTGC-CATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTA-CTT-AG
* *
12781451 TCTAC-CTCACTGCAACTTCA-GGAGGATAAGACTTGCTTGCTTAG
1 TCTGCTC-CACTGCAACTTCAGGGA-GATAAGACTTGCTTACTTAG
* * *
12781495 TCTACTTCACTGCAACTTCATGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
12781526 GTAGATGCGA
Statistics
Matches: 423, Mismatches: 87, Indels: 89
0.71 0.15 0.15
Matches are distributed among these distances:
40 47 0.11
41 14 0.03
42 4 0.01
43 37 0.09
44 184 0.43
45 131 0.31
46 3 0.01
47 1 0.00
48 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (44 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTACTTAG
Found at i:12781228 original size:129 final size:129
Alignment explanation
Indices: 12780927--12781349 Score: 438
Period size: 129 Copynumber: 3.2 Consensus size: 129
12780917 GCTATCTTTA
* * ** * * *
12780927 ATCTGCTCCACTGCAACTTCAGGGAGATAAGA-TTATTTAT-TT-AGTCTGCCCCACTGCAATTT
1 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATTTA-CCATCTTCAGTCTGCCTCACTACAACTT
* * * * * * * *
12780989 CAGGGGGATAAGACTTGCTTTCTTGAGTCTGCTCCACTGCAAATTCAGGTAAATAAGACTATCGG
64 CAAGAGGATAAGACATACTTACTT-AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA---G
* ***
12781054 CTTTA
125 ATGCG
* * *
12781059 ATCTGCCCCACTGCAACTTCAGGGAGATAAGATTTACCATCTTCAGTCTGCCTCACTACAACTTC
1 ATCTG-CTCTCTGCAACTTCAGAGAGATAAGATTTACCATCTTCAGTCTGCCTCACTACAACTTC
* * * * *
12781124 AAGAGGATAAGTCTTGCTTACTTAGTCTGCTCCACTGTAACTTTAGGGAGATAAGACTAGATGCG
65 AAGAGGATAAGACATACTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCG
* * *
12781189 ATCTGCTCTCTGCAACTTTAGAGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCA
1 ATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTACCATCTTCAGTCTGCCTCACTACAACTTCA
* * * *
12781254 GGAGGATAAGACATATTTACTTAGTCTGCTCTACTGCAACTTCAGGGAGATAAGACTAGATGGG
66 AGAGGATAAGACATACTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCG
* *
12781318 ATTTGCTCTTTGCAACTTCAGAGAGATAAGAT
1 ATCTGCTCTCTGCAACTTCAGAGAGATAAGAT
12781350 CCAAGGTTTT
Statistics
Matches: 250, Mismatches: 37, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
129 138 0.55
130 7 0.03
132 31 0.12
133 37 0.15
134 37 0.15
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (129 bp):
ATCTGCTCTCTGCAACTTCAGAGAGATAAGATTTACCATCTTCAGTCTGCCTCACTACAACTTCA
AGAGGATAAGACATACTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCG
Found at i:12781461 original size:217 final size:217
Alignment explanation
Indices: 12781198--12781618 Score: 700
Period size: 217 Copynumber: 1.9 Consensus size: 217
12781188 GATCTGCTCT
* *
12781198 CTGCAACTTTAGAGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGCAACTTCAGGAGGATAA
1 CTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTTCAGGAGGATAA
* * * *
12781263 GACATATTTACTTAGTCTGC-TCTACTGCAACTTCAGGGAGATAAGACTAGATGGGATTTGCTCT
66 GACATACTTACTTAGTCTACTTC-ACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCT
*
12781327 TTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGG
130 CTGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGG
*
12781392 ATTATTGGCTCTAATCTACTCCA
195 ATCATTGGCTCTAATCTACTCCA
*
12781415 CTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTTCAGGAGGATAA
1 CTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTTCAGGAGGATAA
* * * * *
12781480 GACTTGCTTGCTTAGTCTACTTCACTGCAACTTCATGGAGATAAGAGTAGATGCGATCTGCTCTC
66 GACATACTTACTTAGTCTACTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTC
12781545 TGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
131 TGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
12781610 TCATTGGCT
196 TCATTGGCT
12781619 TTCGATCTGT
Statistics
Matches: 189, Mismatches: 14, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
217 187 0.99
218 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (217 bp):
CTGCAACTTCAGAGAGATAAGATTTGCCATCTTCAGTCTACCTCACTGCAACTTCAGGAGGATAA
GACATACTTACTTAGTCTACTTCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTC
TGCAACTTCAGAGAGATAAGATCCAAGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGA
TCATTGGCTCTAATCTACTCCA
Found at i:12781500 original size:89 final size:89
Alignment explanation
Indices: 12780910--12781525 Score: 301
Period size: 89 Copynumber: 7.0 Consensus size: 89
12780900 TCAAGAGCAC
* * * * ** **
12780910 AAGATTTGCTATCTTTAATCTGCTCCACTGCAACTTCAGG-GAGATAAGA-TTATTTATTTAGTC
1 AAGATTTGCCATCTTCAGTCTCCT-CACTGCAACTTCAGGAGAGATAAGACTTGCTTGCTTAGTC
* * *
12780973 TGCCCCACTGCAATTTCAGGGGGAT
65 TGCTCCACTGCAACTTCAGGGAGAT
* ** * * * *
12780998 AAGACTTGCTTTCTTGAGTCTGCTCCACTGCAAATTCAGGTA-A-ATAAGACTAT-C-GGCTTTA
1 AAGATTTGCCATCTTCAGTCTCCT-CACTGCAACTTCAGG-AGAGATAAGACT-TGCTTGC-TTA
* *
12781059 ATCTGCCCCACTGCAACTTCAGGGAGAT
62 GTCTGCTCCACTGCAACTTCAGGGAGAT
* * * * *
12781087 AAGATTTACCATCTTCAGTCTGCCTCACTACAACTTCAAGAG-GATAAGTCTTGCTTACTTAGTC
1 AAGATTTGCCATCTTCAGTCT-CCTCACTGCAACTTCAGGAGAGATAAGACTTGCTTGCTTAGTC
* *
12781151 TGCTCCACTGTAACTTTAGGGAGAT
65 TGCTCCACTGCAACTTCAGGGAGAT
* * * * * * * *
12781176 AAGACTAG--A--TGC-GATCTGCTCTCTGCAACTTTA-GAGAGATAAGATTTGCCAT-CTTCAG
1 AAGATTTGCCATCTTCAG-TCTCCTCACTGCAACTTCAGGAGAGATAAGACTTG-CTTGCTT-AG
12781234 TCTGC-CTCACTGCAACTTCA-GGAGGAT
63 TCTGCTC-CACTGCAACTTCAGGGA-GAT
* * * * **
12781261 AAGACATATT--TA-CTT-AGTCTGCTCTACTGCAACTTCAGG-GAGATAAGACTAG-ATG-GGA
1 AAG--AT-TTGCCATCTTCAGTCTCCTC-ACTGCAACTTCAGGAGAGATAAGACTTGCTTGCTTA
* ** *
12781319 -TTTGCT-CTTTGCAACTTCAGAGAGAT
62 GTCTGCTCCACTGCAACTTCAGGGAGAT
* * * *
12781345 AAGA--T-CCAAGGT-TTTAATC-CGCTCCACTGCAACTTCAGG-GAGATAGGA-TT-ATTGGCT
1 AAGATTTGCC-A--TCTTCAGTCTC-CT-CACTGCAACTTCAGGAGAGATAAGACTTGCTT-GCT
* *
12781402 CTAATCTACTCCACTGCAACTTCAGGGAGAT
60 -TAGTCTGCTCCACTGCAACTTCAGGGAGAT
12781433 AAGATTTGCCATCTTCAGTCTACCTCACTGCAACTTCAGGAG-GATAAGACTTGCTTGCTTAGTC
1 AAGATTTGCCATCTTCAGTCT-CCTCACTGCAACTTCAGGAGAGATAAGACTTGCTTGCTTAGTC
* * *
12781497 TACTTCACTGCAACTTCATGGAGAT
65 TGCTCCACTGCAACTTCAGGGAGAT
12781522 AAGA
1 AAGA
12781526 GTAGATGCGA
Statistics
Matches: 404, Mismatches: 74, Indels: 99
0.70 0.13 0.17
Matches are distributed among these distances:
79 1 0.00
81 1 0.00
82 1 0.00
83 7 0.02
84 74 0.18
85 38 0.09
86 2 0.00
87 8 0.02
88 74 0.18
89 178 0.44
90 15 0.04
91 5 0.01
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (89 bp):
AAGATTTGCCATCTTCAGTCTCCTCACTGCAACTTCAGGAGAGATAAGACTTGCTTGCTTAGTCT
GCTCCACTGCAACTTCAGGGAGAT
Found at i:12793319 original size:19 final size:19
Alignment explanation
Indices: 12793278--12793320 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
12793268 ATGCTACATT
* *
12793278 AAATATACAATGTGATAAT
1 AAATATACAATGTCATAAG
12793297 AAATATTACAATGTCAT-AG
1 AAATA-TACAATGTCATAAG
12793316 AAATA
1 AAATA
12793321 ATGCATACAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 11 0.52
20 10 0.48
ACGTcount: A:0.53, C:0.07, G:0.09, T:0.30
Consensus pattern (19 bp):
AAATATACAATGTCATAAG
Found at i:12802035 original size:68 final size:67
Alignment explanation
Indices: 12801876--12802246 Score: 408
Period size: 67 Copynumber: 5.5 Consensus size: 67
12801866 ACCTTAAAAG
* * * * **
12801876 GGGTTACAAGGTGTAAAACCATAGCTCAACTTTGACGAA-CAATAGATTCCATTAGGACATTAAA
1 GGGTTACAAGGTGTAAGACCATAGCTCGACTATGAC-AACCAATAGAGTCCACCAGGACATTAAA
12801940 CAT
65 CAT
* * * * *
12801943 GGGTTATAAGGTGTAAGACCATAGCTTGACTATGGCAACCAATAAAGTCCGCCAGGACATTAAAC
1 GGGTTACAAGGTGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCCACCAGGACATTAAAC
12802008 AT
66 AT
* * * *
12802010 AAGGTTACAAGGTGTAAAACCATAGCTC-AGCTATGACAACCAATAGAGTCCTCTAGGACATTAA
1 -GGGTTACAAGGTGTAAGACCATAGCTCGA-CTATGACAACCAATAGAGTCCACCAGGACATTAA
12802074 ACAT
64 ACAT
* * * * *
12802078 GAGGTTACAAGGTGTAAGACCATAGCACGATTATGAC-ACCAATAGAGTTCACCAAGAAATTAAA
1 G-GGTTACAAGGTGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCCACCAGGACATTAAA
12802142 CAT
65 CAT
* * * * *
12802145 GGGTTTACATGGTGTAAGACCATAACCCAACTATGACAACCAATAGAGTCTACCAGGACATTAAA
1 GGG-TTACAAGGTGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCCACCAGGACATTAAA
*
12802210 CTT
65 CAT
* *
12802213 GGGGTTAC-ATGTGTAAGACTATAGCTCGACTATG
1 -GGGTTACAAGGTGTAAGACCATAGCTCGACTATG
12802247 GCAGCATATG
Statistics
Matches: 252, Mismatches: 44, Indels: 16
0.81 0.14 0.05
Matches are distributed among these distances:
66 4 0.02
67 128 0.51
68 116 0.46
69 4 0.02
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.23
Consensus pattern (67 bp):
GGGTTACAAGGTGTAAGACCATAGCTCGACTATGACAACCAATAGAGTCCACCAGGACATTAAAC
AT
Found at i:12802119 original size:135 final size:134
Alignment explanation
Indices: 12801877--12802246 Score: 444
Period size: 135 Copynumber: 2.7 Consensus size: 134
12801867 CCTTAAAAGG
* *
12801877 GGTTACAAGGTGTAAAACCATAGCTCAACTTTGACGAA-CAATAGATTCCAT-TAGGACATTAAA
1 GGTTACAAGGTGTAAAACCATAGCTCAACTATGAC-AACCAATAGAGTCC-TCTAGGACATTAAA
* * * * * *
12801940 CATGGGTTATAAGGTGTAAGACCATAGCTTGACTATGGCAACCAATAAAGTCCGCCAGGACATTA
64 CATGGGTTACAAGGTGTAAGACCATAGCTCGACTATGACAACCAATAAAGTCCACCAAGAAATTA
12802005 AACATAA
129 AACAT-A
*
12802012 GGTTACAAGGTGTAAAACCATAGCTCAGCTATGACAACCAATAGAGTCCTCTAGGACATTAAACA
1 GGTTACAAGGTGTAAAACCATAGCTCAACTATGACAACCAATAGAGTCCTCTAGGACATTAAACA
* * * *
12802077 TGAGGTTACAAGGTGTAAGACCATAGCACGATTATGAC-ACCAATAGAGTTCACCAAGAAATTAA
66 TG-GGTTACAAGGTGTAAGACCATAGCTCGACTATGACAACCAATAAAGTCCACCAAGAAATTAA
*
12802141 ACATG
130 ACATA
* * * * *
12802146 GGTTTACATGGTGTAAGACCATAACCCAACTATGACAACCAATAGAGT-CTACCAGGACATTAAA
1 GG-TTACAAGGTGTAAAACCATAGCTCAACTATGACAACCAATAGAGTCCT-CTAGGACATTAAA
* * *
12802210 CTTGGGGTTAC-ATGTGTAAGACTATAGCTCGACTATG
64 CAT-GGGTTACAAGGTGTAAGACCATAGCTCGACTATG
12802247 GCAGCATATG
Statistics
Matches: 204, Mismatches: 25, Indels: 13
0.84 0.10 0.05
Matches are distributed among these distances:
134 29 0.14
135 144 0.71
136 31 0.15
ACGTcount: A:0.38, C:0.19, G:0.20, T:0.24
Consensus pattern (134 bp):
GGTTACAAGGTGTAAAACCATAGCTCAACTATGACAACCAATAGAGTCCTCTAGGACATTAAACA
TGGGTTACAAGGTGTAAGACCATAGCTCGACTATGACAACCAATAAAGTCCACCAAGAAATTAAA
CATA
Found at i:12805061 original size:180 final size:180
Alignment explanation
Indices: 12804753--12805105 Score: 553
Period size: 180 Copynumber: 2.0 Consensus size: 180
12804743 ATTTGCATGT
*
12804753 AAAAAAATTCTCCAAGTGTGAATCTCTATGCATGAGTTTTCTAAAATCAATCTACCGTACGTTAA
1 AAAAAAATTCTCCAAGTGTGAATCTCTATGCATGAGTTTTCTAAAATCAATCTACCATACGTTAA
* * * **
12804818 TCCGCAATGAAAGCAATTACTAAGGTAATTGGCATATGTTCTACTGGAAAAAGAGTTAATAATCC
66 TCCGCAATGAAAACAATTACTAAGGTAATTCGCATATGTTCTACTAGAAAAAGAGGCAATAATCC
* **
12804883 ATCTTGTATGAAATTAGTGCAAATGGTTAAGCGAAATCATTCCGCTTGTA
131 ATCTTGTATGAAATTAGTACAAATGGGCAAGCGAAATCATTCCGCTTGTA
* ***
12804933 AAAAAAATTCTCCAAGTGTGAATCTCTATGCATGAGTTTTCTAGAATCAATCTGTTATACGTTAA
1 AAAAAAATTCTCCAAGTGTGAATCTCTATGCATGAGTTTTCTAAAATCAATCTACCATACGTTAA
* * *
12804998 TTCGCAATGAAAATAATTGCTAAGGTAATTCGCATATGTTCTACTAGAAAAAGAGGCAATAATCC
66 TCCGCAATGAAAACAATTACTAAGGTAATTCGCATATGTTCTACTAGAAAAAGAGGCAATAATCC
*
12805063 ATCTTGTATGAAATTAGTACAAATGGGCAAGTGAAATCATTCC
131 ATCTTGTATGAAATTAGTACAAATGGGCAAGCGAAATCATTCC
12805106 ACATTATAGC
Statistics
Matches: 156, Mismatches: 17, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
180 156 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (180 bp):
AAAAAAATTCTCCAAGTGTGAATCTCTATGCATGAGTTTTCTAAAATCAATCTACCATACGTTAA
TCCGCAATGAAAACAATTACTAAGGTAATTCGCATATGTTCTACTAGAAAAAGAGGCAATAATCC
ATCTTGTATGAAATTAGTACAAATGGGCAAGCGAAATCATTCCGCTTGTA
Found at i:12810070 original size:40 final size:39
Alignment explanation
Indices: 12810001--12810092 Score: 96
Period size: 40 Copynumber: 2.4 Consensus size: 39
12809991 CTTAATATAA
* * * **
12810001 TTTTTTTAGAA-TTTATATATATTTAAAATTTTATGAAT
1 TTTTTTTAAAATTTTATACATAATTAAAATTTTAAAAAT
*
12810039 TTTTTTTAAAATTTTTTACATAATTATAAATTTTAAAAAT
1 TTTTTTTAAAATTTTATACATAATTA-AAATTTTAAAAAT
* *
12810079 ATTTTTTATAATTT
1 TTTTTTTAAAATTT
12810093 CAAAAAATAA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
38 10 0.23
39 11 0.25
40 23 0.52
ACGTcount: A:0.38, C:0.01, G:0.02, T:0.59
Consensus pattern (39 bp):
TTTTTTTAAAATTTTATACATAATTAAAATTTTAAAAAT
Found at i:12811528 original size:12 final size:12
Alignment explanation
Indices: 12811511--12811535 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
12811501 TATAGGGCGG
12811511 CTTTTTATGTAT
1 CTTTTTATGTAT
12811523 CTTTTTATGTAT
1 CTTTTTATGTAT
12811535 C
1 C
12811536 CATTCATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.12, G:0.08, T:0.64
Consensus pattern (12 bp):
CTTTTTATGTAT
Found at i:12823819 original size:61 final size:62
Alignment explanation
Indices: 12823702--12823821 Score: 154
Period size: 61 Copynumber: 2.0 Consensus size: 62
12823692 TTTGACCTAA
* *
12823702 TAACAAATTTAGCCCTCCAATGTTTACAGATTCTATCAATTTAGTTTTAAATCTAAAAAATT
1 TAACAAATTTAGCCCTCCAATATTTACAGATTCTATCAATTTAGTTATAAATCTAAAAAATT
* * * * *
12823764 TAACAAATTTAG-CCTTCAGTATTTACAAGATT-TGTCACTTTAGTTATAATTCTAAAAA
1 TAACAAATTTAGCCCTCCAATATTTAC-AGATTCTATCAATTTAGTTATAAATCTAAAAA
12823822 TTCTGAAATA
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
61 33 0.66
62 17 0.34
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.39
Consensus pattern (62 bp):
TAACAAATTTAGCCCTCCAATATTTACAGATTCTATCAATTTAGTTATAAATCTAAAAAATT
Found at i:12830818 original size:18 final size:19
Alignment explanation
Indices: 12830795--12830830 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
12830785 ATCTTCCACT
*
12830795 TTTATTTTTTTA-TGTTTA
1 TTTATTTATTTATTGTTTA
12830813 TTTATTTATTTATTGTTT
1 TTTATTTATTTATTGTTT
12830831 TAATATTTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.17, C:0.00, G:0.06, T:0.78
Consensus pattern (19 bp):
TTTATTTATTTATTGTTTA
Found at i:12831236 original size:15 final size:16
Alignment explanation
Indices: 12831216--12831246 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
12831206 ATCAACTAAG
12831216 TAAAAT-AAAATAAAA
1 TAAAATAAAAATAAAA
12831231 TAAAATAAAAATAAAA
1 TAAAATAAAAATAAAA
12831247 GTTCCAATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (16 bp):
TAAAATAAAAATAAAA
Found at i:12831243 original size:6 final size:5
Alignment explanation
Indices: 12831216--12831246 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
12831206 ATCAACTAAG
12831216 TAAAA TAAAA TAAAA TAAAA TAAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA T-AAAA TAAAA
12831247 GTTCCAATGC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
TAAAA
Found at i:12835443 original size:13 final size:13
Alignment explanation
Indices: 12835425--12835450 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12835415 TAGTTTACTC
12835425 AAATTATTATAAT
1 AAATTATTATAAT
12835438 AAATTATTATAAT
1 AAATTATTATAAT
12835451 TATGATTTCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (13 bp):
AAATTATTATAAT
Found at i:12836543 original size:27 final size:21
Alignment explanation
Indices: 12836486--12836537 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
12836476 ATGAGATCAT
12836486 TTCAAAATGATTATGATTTTC
1 TTCAAAATGATTATGATTTTC
12836507 TTCAAAATGATTATGATTTTC
1 TTCAAAATGATTATGATTTTC
12836528 TTCAAAATGA
1 TTCAAAATGA
12836538 AAATGAAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.44
Consensus pattern (21 bp):
TTCAAAATGATTATGATTTTC
Found at i:12850963 original size:22 final size:22
Alignment explanation
Indices: 12850924--12850966 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
12850914 GTTTACTTTC
*
12850924 AATTAAAATTATAAATTAAAAA
1 AATTAAAAATATAAATTAAAAA
**
12850946 AATTAAAAATATCGATTAAAA
1 AATTAAAAATATAAATTAAAA
12850967 TTTATTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.30
Consensus pattern (22 bp):
AATTAAAAATATAAATTAAAAA
Found at i:12852238 original size:6 final size:6
Alignment explanation
Indices: 12852229--12852262 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
12852219 AAACATTGTT
12852229 GGTTGA GGTTGA GGTTGA GGTTGA GGTTGA GGTT
1 GGTTGA GGTTGA GGTTGA GGTTGA GGTTGA GGTT
12852263 TTTGTGTTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.50, T:0.35
Consensus pattern (6 bp):
GGTTGA
Found at i:12856895 original size:13 final size:13
Alignment explanation
Indices: 12856877--12856921 Score: 65
Period size: 13 Copynumber: 3.4 Consensus size: 13
12856867 GATAGGATTT
12856877 TGTATATCTGTTC
1 TGTATATCTGTTC
12856890 TGTATATCTGATTC
1 TGTATATCTG-TTC
12856904 TGT-TATCTGTATC
1 TGTATATCTGT-TC
12856917 TGTAT
1 TGTAT
12856922 CTGTATCTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
12 1 0.03
13 21 0.72
14 7 0.24
ACGTcount: A:0.18, C:0.13, G:0.16, T:0.53
Consensus pattern (13 bp):
TGTATATCTGTTC
Found at i:12856916 original size:6 final size:6
Alignment explanation
Indices: 12856881--12856932 Score: 54
Period size: 6 Copynumber: 8.3 Consensus size: 6
12856871 GGATTTTGTA
12856881 TATCTG T-TCTG TATATCTG -ATTCTG TTATCTG TATCTG TATCTG TATCTG
1 TATCTG TATCTG --TATCTG TA-TCTG -TATCTG TATCTG TATCTG TATCTG
12856931 TA
1 TA
12856933 AAGGACCTAA
Statistics
Matches: 40, Mismatches: 0, Indels: 12
0.77 0.00 0.23
Matches are distributed among these distances:
5 5 0.12
6 25 0.62
7 5 0.12
8 5 0.12
ACGTcount: A:0.17, C:0.15, G:0.15, T:0.52
Consensus pattern (6 bp):
TATCTG
Found at i:12857666 original size:15 final size:17
Alignment explanation
Indices: 12857646--12857685 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
12857636 TAAATCGTAT
12857646 AAATTAATAATTA-A-A
1 AAATTAATAATTATATA
12857661 AAATTAAT-ATTATATA
1 AAATTAATAATTATATA
12857677 AAATTAATA
1 AAATTAATA
12857686 TAGTTATTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.18
15 9 0.41
16 9 0.41
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATTAATAATTATATA
Found at i:12857681 original size:16 final size:14
Alignment explanation
Indices: 12857646--12857686 Score: 55
Period size: 16 Copynumber: 2.7 Consensus size: 14
12857636 TAAATCGTAT
12857646 AAATTAATAATTAAA
1 AAATTAAT-ATTAAA
12857661 AAATTAATATTATATA
1 AAATTAATATTA-A-A
12857677 AAATTAATAT
1 AAATTAATAT
12857687 AGTTATTAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 4 0.17
15 9 0.38
16 11 0.46
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (14 bp):
AAATTAATATTAAA
Found at i:12858755 original size:19 final size:18
Alignment explanation
Indices: 12858733--12858776 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 18
12858723 AAATAGTGAA
12858733 AAAATAACAAGAAAATAAT
1 AAAA-AACAAGAAAATAAT
*
12858752 AAAAAAGCAAGAAAATAGT
1 AAAAAA-CAAGAAAATAAT
12858771 AAAAAA
1 AAAAAA
12858777 ACAACAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 2 0.09
19 21 0.91
ACGTcount: A:0.75, C:0.05, G:0.09, T:0.11
Consensus pattern (18 bp):
AAAAAACAAGAAAATAAT
Found at i:12864720 original size:18 final size:18
Alignment explanation
Indices: 12864672--12864720 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
12864662 GTTGAAAACA
12864672 AAGAGGGAGT-TGAGAATG
1 AAGAGGGA-TCTGAGAATG
* * *
12864690 AAGTGGAAGCTGAGAATG
1 AAGAGGGATCTGAGAATG
12864708 AAGAGGGATCTGA
1 AAGAGGGATCTGA
12864721 ATCTGGTAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.04, G:0.41, T:0.16
Consensus pattern (18 bp):
AAGAGGGATCTGAGAATG
Done.