Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 49 of 173
Found at i:13472264 original size:18 final size:18
Alignment explanation
Indices: 13472234--13472297 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
13472224 ATTAGGCATA
13472234 ATTTTAGTA-AATTTTATT
1 ATTTTA-TATAATTTTATT
*
13472252 ATTTTATATAATTTAGTGTT
1 ATTTTATATAATTT--TATT
* *
13472272 AATTTTACATAATTTTACT
1 -ATTTTATATAATTTTATT
13472291 ATTTTAT
1 ATTTTAT
13472298 GCAATGTGTT
Statistics
Matches: 37, Mismatches: 5, Indels: 8
0.74 0.10 0.16
Matches are distributed among these distances:
17 2 0.05
18 17 0.46
19 2 0.05
20 3 0.08
21 13 0.35
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.59
Consensus pattern (18 bp):
ATTTTATATAATTTTATT
Found at i:13473727 original size:15 final size:16
Alignment explanation
Indices: 13473697--13473728 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
13473687 TTGTATTTCA
13473697 TTGCATTTAGGTTAAT
1 TTGCATTTAGGTTAAT
13473713 TTGCATTTA-GTTAAT
1 TTGCATTTAGGTTAAT
13473728 T
1 T
13473729 AATTTAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.25, C:0.06, G:0.16, T:0.53
Consensus pattern (16 bp):
TTGCATTTAGGTTAAT
Found at i:13483759 original size:25 final size:24
Alignment explanation
Indices: 13483722--13483778 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
13483712 TCCTGTACAT
13483722 GTATGCTCATACGAGCTCTAAACCG
1 GTATGCTCATACGAGCTCTAAA-CG
* *
13483747 GTATGCTCTTACGAGCTGTAAACG
1 GTATGCTCATACGAGCTCTAAACG
*
13483771 GTAAGCTC
1 GTATGCTC
13483779 CTCTGAGCTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
24 9 0.31
25 20 0.69
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (24 bp):
GTATGCTCATACGAGCTCTAAACG
Found at i:13483801 original size:25 final size:25
Alignment explanation
Indices: 13483759--13483878 Score: 145
Period size: 25 Copynumber: 4.8 Consensus size: 25
13483749 ATGCTCTTAC
*
13483759 GAGCTGTA-AACGGTAAGCTCCTCT
1 GAGCTGAATAACGGTAAGCTCCTCT
*
13483783 GAGCTGAATAACGGTAAGCTCCTCC
1 GAGCTGAATAACGGTAAGCTCCTCT
* *
13483808 AAGCTGAATAACGGTAAACTCCTCT
1 GAGCTGAATAACGGTAAGCTCCTCT
* *
13483833 AAGCTGAATAACGGTAAGCTCATAC-
1 GAGCTGAATAACGGTAAGCTCCT-CT
* *
13483858 GAGTTGAGTAACGGTAAGCTC
1 GAGCTGAATAACGGTAAGCTC
13483879 ATACGAGATT
Statistics
Matches: 84, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
24 7 0.08
25 76 0.90
26 1 0.01
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (25 bp):
GAGCTGAATAACGGTAAGCTCCTCT
Found at i:13483870 original size:50 final size:50
Alignment explanation
Indices: 13483745--13483874 Score: 154
Period size: 50 Copynumber: 2.6 Consensus size: 50
13483735 AGCTCTAAAC
* * * * * *
13483745 CGGTATGCTCTTACGAGCTGTA-AACGGTAAGCTCCTCTGAGCTGAATAA
1 CGGTAAGCTCATACAAGCTGAATAACGGTAAACTCCTCTAAGCTGAATAA
* *
13483794 CGGTAAGCTCCTCCAAGCTGAATAACGGTAAACTCCTCTAAGCTGAATAA
1 CGGTAAGCTCATACAAGCTGAATAACGGTAAACTCCTCTAAGCTGAATAA
* * *
13483844 CGGTAAGCTCATACGAGTTGAGTAACGGTAA
1 CGGTAAGCTCATACAAGCTGAATAACGGTAA
13483875 GCTCATACGA
Statistics
Matches: 68, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
49 17 0.25
50 51 0.75
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (50 bp):
CGGTAAGCTCATACAAGCTGAATAACGGTAAACTCCTCTAAGCTGAATAA
Found at i:13492377 original size:25 final size:25
Alignment explanation
Indices: 13492283--13492402 Score: 100
Period size: 25 Copynumber: 4.8 Consensus size: 25
13492273 GTTACCAATG
* * * * *
13492283 TCAGCTCGTATGAGCTTACTGATAC
1 TCAGCTCGAAGGAGCTTACCGTTAT
* * *
13492308 TCAGCTCGCATGAGCTTACTGTTAT
1 TCAGCTCGAAGGAGCTTACCGTTAT
* *
13492333 CCAGCTCGGAGGAGCTTACCGTTAT
1 TCAGCTCGAAGGAGCTTACCGTTAT
*
13492358 TCAGCTCGAAGGAGCTTACCATT-T
1 TCAGCTCGAAGGAGCTTACCGTTAT
* *
13492382 ACAGCTCGTAA-GAGCATACCG
1 TCAGCTCG-AAGGAGCTTACCG
13492403 ATTCAGAGCT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
24 16 0.20
25 65 0.80
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.28
Consensus pattern (25 bp):
TCAGCTCGAAGGAGCTTACCGTTAT
Found at i:13498281 original size:25 final size:24
Alignment explanation
Indices: 13498236--13498312 Score: 79
Period size: 25 Copynumber: 3.2 Consensus size: 24
13498226 AAGATTACCA
* *
13498236 ATTTCATCTTGTATGAGCTTACTG
1 ATTTCAGCTCGTATGAGCTTACTG
13498260 ATTTGCAGCTCGTGA-GAGCTTA-TCG
1 ATTT-CAGCTCGT-ATGAGCTTACT-G
13498285 ATTCTCAGCTCGTATGAGCTTAC-G
1 ATT-TCAGCTCGTATGAGCTTACTG
13498309 ATTT
1 ATTT
13498313 ACATCTCATG
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
23 1 0.02
24 10 0.22
25 32 0.71
26 2 0.04
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (24 bp):
ATTTCAGCTCGTATGAGCTTACTG
Found at i:13498344 original size:49 final size:50
Alignment explanation
Indices: 13498246--13498350 Score: 115
Period size: 49 Copynumber: 2.1 Consensus size: 50
13498236 ATTTCATCTT
* * * ** *
13498246 GTATGAGCTTACTGATTTGCAGCTCGTGAGAGCTTATCGATTCTCAGCTC
1 GTATGAGCTTACTGATTTACAGCTCATGAAAGCAGACCGATTCTCAGCTC
*
13498296 GTATGAGCTTAC-GATTTACATCTCATGAAAGCAGACCGATTCAT-AGCTC
1 GTATGAGCTTACTGATTTACAGCTCATGAAAGCAGACCGATTC-TCAGCTC
*
13498345 GAATGA
1 GTATGA
13498351 CCATACATGT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
49 33 0.72
50 13 0.28
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (50 bp):
GTATGAGCTTACTGATTTACAGCTCATGAAAGCAGACCGATTCTCAGCTC
Found at i:13499471 original size:15 final size:16
Alignment explanation
Indices: 13499451--13499480 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13499441 TGGTACCTTG
13499451 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
13499466 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
13499481 AGCATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:13517549 original size:31 final size:31
Alignment explanation
Indices: 13517514--13517605 Score: 74
Period size: 31 Copynumber: 3.2 Consensus size: 31
13517504 CGGCTCAGTA
13517514 ACTAAACTGTTACAAAGCGATAACCTAAGTG
1 ACTAAACTGTTACAAAGCGATAACCTAAGTG
* * * *
13517545 ACTAAAAC-G-TA-ACA-CG----GCTCAGTA
1 ACT-AAACTGTTACAAAGCGATAACCTAAGTG
*
13517569 ACTAAAATGTTACAAAGCGATAACCTAAGTG
1 ACTAAACTGTTACAAAGCGATAACCTAAGTG
13517600 ACTAAA
1 ACTAAA
13517606 ACGTAACACT
Statistics
Matches: 43, Mismatches: 9, Indels: 18
0.61 0.13 0.26
Matches are distributed among these distances:
23 3 0.07
24 9 0.21
25 2 0.05
26 2 0.05
27 2 0.05
28 2 0.05
29 2 0.05
30 2 0.05
31 15 0.35
32 4 0.09
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.21
Consensus pattern (31 bp):
ACTAAACTGTTACAAAGCGATAACCTAAGTG
Found at i:13517587 original size:55 final size:55
Alignment explanation
Indices: 13517503--13517614 Score: 215
Period size: 55 Copynumber: 2.0 Consensus size: 55
13517493 TACACCGTTA
*
13517503 ACGGCTCAGTAACTAAACTGTTACAAAGCGATAACCTAAGTGACTAAAACGTAAC
1 ACGGCTCAGTAACTAAAATGTTACAAAGCGATAACCTAAGTGACTAAAACGTAAC
13517558 ACGGCTCAGTAACTAAAATGTTACAAAGCGATAACCTAAGTGACTAAAACGTAAC
1 ACGGCTCAGTAACTAAAATGTTACAAAGCGATAACCTAAGTGACTAAAACGTAAC
13517613 AC
1 AC
13517615 TTCAAACATA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 56 1.00
ACGTcount: A:0.43, C:0.21, G:0.16, T:0.20
Consensus pattern (55 bp):
ACGGCTCAGTAACTAAAATGTTACAAAGCGATAACCTAAGTGACTAAAACGTAAC
Found at i:13522641 original size:20 final size:20
Alignment explanation
Indices: 13522602--13522642 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
13522592 ATTCATGAAG
*
13522602 TTAAAAAAATAAATCTTAAT
1 TTAAAAAAATAAATCGTAAT
13522622 TTAAAGAAAATAAA-CGTAAT
1 TTAAA-AAAATAAATCGTAAT
13522642 T
1 T
13522643 ATCTACAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.32
Consensus pattern (20 bp):
TTAAAAAAATAAATCGTAAT
Found at i:13542748 original size:16 final size:17
Alignment explanation
Indices: 13542724--13542767 Score: 51
Period size: 16 Copynumber: 2.8 Consensus size: 17
13542714 TGCAACTTCT
13542724 TCTCCTTC-TTTCTTTC
1 TCTCCTTCTTTTCTTTC
*
13542740 TCTCTTTCTTTTCTTT-
1 TCTCCTTCTTTTCTTTC
13542756 TCT--TTCTTTTCT
1 TCTCCTTCTTTTCT
13542768 AATTTATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
14 9 0.35
16 10 0.38
17 7 0.27
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (17 bp):
TCTCCTTCTTTTCTTTC
Found at i:13554465 original size:29 final size:28
Alignment explanation
Indices: 13554391--13554688 Score: 265
Period size: 29 Copynumber: 10.2 Consensus size: 28
13554381 GTGTGCTAAA
* *
13554391 CGATGGTCAAAACCATCCCTTTTCTTTAAT
1 CGATGGTC-AAACCATCCCTTTTC-ATATT
*
13554421 CGATGGTCGGAACCATCCCTTTTCATATT
1 CGATGGTC-AAACCATCCCTTTTCATATT
*
13554450 CAATGGTCAAAGCCATCCCTTTTCATATT
1 CGATGGTCAAA-CCATCCCTTTTCATATT
13554479 CGATGGTCAAAACCATCCCTTTTCATATT
1 CGATGGTC-AAACCATCCCTTTTCATATT
* * ** *
13554508 TGATAGTCGTCACCATCCCTTTACATATT
1 CGATGGTC-AAACCATCCCTTTTCATATT
*
13554537 CGATGGTCATCACCATCCCTTTTCATATT
1 CGATGGTCA-AACCATCCCTTTTCATATT
* * * * *
13554566 TGATAGTTGAAACCATCCATTTTCTTTAATT
1 CGAT-GGTCAAACCATCCCTTTTC-AT-ATT
* *
13554597 -GATGGTCGAAGCCATCCCTTTTCACATT
1 CGATGGTC-AAACCATCCCTTTTCATATT
** * *
13554625 TAATGGTCATCACCATCCCTTTTCATATC
1 CGATGGTCA-AACCATCCCTTTTCATATT
* *
13554654 CAATGGTCGAAACCATCCGTTTTCATATT
1 CGATGGTC-AAACCATCCCTTTTCATATT
13554683 CGATGG
1 CGATGG
13554689 GTGTCGATAC
Statistics
Matches: 219, Mismatches: 39, Indels: 21
0.78 0.14 0.08
Matches are distributed among these distances:
28 6 0.03
29 164 0.75
30 46 0.21
31 3 0.01
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (28 bp):
CGATGGTCAAACCATCCCTTTTCATATT
Found at i:13554500 original size:58 final size:57
Alignment explanation
Indices: 13554392--13554688 Score: 292
Period size: 58 Copynumber: 5.1 Consensus size: 57
13554382 TGTGCTAAAC
* * * *
13554392 GATGGTCAAAACCATCCCTTTTCTTTAATCGATGGTCGGAACCATCCCTTTTCATATTC
1 GATGGTC-AAACCATCCCTTTTC-ATATTCGATGGTCGAAACCATCCCTTTTCATATTT
* *
13554451 AATGGTCAAAGCCATCCCTTTTCATATTCGATGGTCAAAACCATCCCTTTTCATATTT
1 GATGGTCAAA-CCATCCCTTTTCATATTCGATGGTCGAAACCATCCCTTTTCATATTT
* ** * *
13554509 GATAGTCGTCACCATCCCTTTACATATTCGATGGTC-ATCACCATCCCTTTTCATATTT
1 GATGGTC-AAACCATCCCTTTTCATATTCGATGGTCGA-AACCATCCCTTTTCATATTT
* * * * * *
13554567 GATAGTTGAAACCATCCATTTTCTTTAATT-GATGGTCGAAGCCATCCCTTTTCACATTT
1 GAT-GGTCAAACCATCCCTTTTC-AT-ATTCGATGGTCGAAACCATCCCTTTTCATATTT
* * * * * *
13554626 AATGGTCATCACCATCCCTTTTCATATCCAATGGTCGAAACCATCCGTTTTCATATTC
1 GATGGTCA-AACCATCCCTTTTCATATTCGATGGTCGAAACCATCCCTTTTCATATTT
13554684 GATGG
1 GATGG
13554689 GTGTCGATAC
Statistics
Matches: 193, Mismatches: 36, Indels: 19
0.78 0.15 0.08
Matches are distributed among these distances:
57 3 0.02
58 127 0.66
59 59 0.31
60 4 0.02
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.36
Consensus pattern (57 bp):
GATGGTCAAACCATCCCTTTTCATATTCGATGGTCGAAACCATCCCTTTTCATATTT
Found at i:13554640 original size:117 final size:116
Alignment explanation
Indices: 13554423--13554688 Score: 304
Period size: 117 Copynumber: 2.3 Consensus size: 116
13554413 TCTTTAATCG
* *
13554423 ATGGTCGGAACCATCCCTTTTCATATTCAATGGTCAAAGCCATCCCTTTTCATATTCGATGGTCA
1 ATGGTCGAAACCATCCCTTTTCATATTCAATGGTCAAAGCCATCCATTTTCATATTCGATGGTCA
* * * * *
13554488 AAACCATCCCTTTTCATATTTGATAGTCGTCACCATCCCTTTACATATTCG
66 AAACCATCCCTTTTCACATTTAATAGTCATCACCATCCCTTTACATATCCA
* ** * * *
13554539 ATGGTC-ATCACCATCCCTTTTCATATTTGATAGTTGAAA-CCATCCATTTTCTTTAATT-GATG
1 ATGGTCGA-AACCATCCCTTTTCATATTCAAT-GGTCAAAGCCATCCATTTTC-AT-ATTCGATG
* * * *
13554601 GTCGAAGCCATCCCTTTTCACATTTAATGGTCATCACCATCCCTTTTCATATCCA
62 GTCAAAACCATCCCTTTTCACATTTAATAGTCATCACCATCCCTTTACATATCCA
* *
13554656 ATGGTCGAAACCATCCGTTTTCATATTCGATGG
1 ATGGTCGAAACCATCCCTTTTCATATTCAATGG
13554689 GTGTCGATAC
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
116 38 0.31
117 82 0.66
118 4 0.03
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.36
Consensus pattern (116 bp):
ATGGTCGAAACCATCCCTTTTCATATTCAATGGTCAAAGCCATCCATTTTCATATTCGATGGTCA
AAACCATCCCTTTTCACATTTAATAGTCATCACCATCCCTTTACATATCCA
Found at i:13554642 original size:88 final size:87
Alignment explanation
Indices: 13554391--13554677 Score: 335
Period size: 88 Copynumber: 3.3 Consensus size: 87
13554381 GTGTGCTAAA
* *
13554391 CGATGGTCAAAACCATCCCTTTTCTTTAATCGATGGTCGGAACCATCCCTTTTCATATTCAATGG
1 CGATAGTCAAAACCATCCCTTTTCTTTAATTGATGGTC-GAACCATCCCTTTTCATATTCAATGG
*
13554456 TCA-AAGCCATCCCTTTTCATATT
65 TCATCA-CCATCCCTTTTCATATT
* * * * * * *
13554479 CGATGGTCAAAACCATCCCTTTTC-ATATTTGATAGTCGTCACCATCCCTTTACATATTCGATGG
1 CGATAGTCAAAACCATCCCTTTTCTTTAATTGATGGTCG-AACCATCCCTTTTCATATTCAATGG
13554543 TCATCACCATCCCTTTTCATATT
65 TCATCACCATCCCTTTTCATATT
* ** * * *
13554566 TGATAGTTGAAACCATCCATTTTCTTTAATTGATGGTCGAAGCCATCCCTTTTCACATTTAATGG
1 CGATAGTCAAAACCATCCCTTTTCTTTAATTGATGGTCGAA-CCATCCCTTTTCATATTCAATGG
*
13554631 TCATCACCATCCCTTTTCATATC
65 TCATCACCATCCCTTTTCATATT
* * * *
13554654 CAATGGTCGAAACCATCCGTTTTC
1 CGATAGTCAAAACCATCCCTTTTC
13554678 ATATTCGATG
Statistics
Matches: 168, Mismatches: 27, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
86 1 0.01
87 71 0.42
88 96 0.57
ACGTcount: A:0.25, C:0.27, G:0.12, T:0.36
Consensus pattern (87 bp):
CGATAGTCAAAACCATCCCTTTTCTTTAATTGATGGTCGAACCATCCCTTTTCATATTCAATGGT
CATCACCATCCCTTTTCATATT
Found at i:13556763 original size:30 final size:29
Alignment explanation
Indices: 13556727--13556786 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 29
13556717 TTCGAGCTTT
*
13556727 GGGGCAAAAGTGTAATTATGTAAAAGTTTA
1 GGGGCAAAAGTGTAATT-TGTAAAAATTTA
* *
13556757 GGGGCAAAATTGTAATTTTTAAAAATTTA
1 GGGGCAAAAGTGTAATTTGTAAAAATTTA
13556786 G
1 G
13556787 ATTCGAGGGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.40, C:0.03, G:0.23, T:0.33
Consensus pattern (29 bp):
GGGGCAAAAGTGTAATTTGTAAAAATTTA
Found at i:13557194 original size:50 final size:50
Alignment explanation
Indices: 13557119--13557399 Score: 282
Period size: 50 Copynumber: 5.8 Consensus size: 50
13557109 ATTTGGGTAA
13557119 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* * *
13557169 AGAGGTTCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
13557219 AGAGGTCCCATGTAAGACCATG--T----C-T---GTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
* *
13557259 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGC-ATGGACACCGATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGG-CACCGAGATG
** * * ** * *
13557309 AGAACTCCCATGTAAGACCATATCTGGGATATGGTATTGGCA--GTACAAG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGATG
* ** * * *
13557358 AAACATCCCATGTAAGACCATGTCTAGGATATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
13557400 TGTTATTATC
Statistics
Matches: 196, Mismatches: 22, Indels: 27
0.80 0.09 0.11
Matches are distributed among these distances:
40 36 0.18
42 1 0.01
43 1 0.01
44 1 0.01
46 1 0.01
47 1 0.01
48 2 0.01
49 41 0.21
50 109 0.56
51 3 0.02
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:13557247 original size:40 final size:40
Alignment explanation
Indices: 13557203--13557284 Score: 155
Period size: 40 Copynumber: 2.0 Consensus size: 40
13557193 TGGGACATGG
*
13557203 TGTTGGCACTGAGATGAGAGGTCCCATGTAAGACCATGTC
1 TGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
13557243 TGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
1 TGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
13557283 TG
1 TG
13557285 GGACATGGCA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.24
Consensus pattern (40 bp):
TGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTC
Found at i:13557251 original size:90 final size:90
Alignment explanation
Indices: 13557154--13557334 Score: 274
Period size: 90 Copynumber: 2.0 Consensus size: 90
13557144 GGGACATGGC
* ** *
13557154 GTTGGCACCGAGATGAGAGGTTCCATGTAAGACCATGTCTGGGACATGGTGTTGG-CACTGAGAT
1 GTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGG-CATGGACACCGAGAT
** *
13557218 GAGAGGTCCCATGTAAGACCATGTCT
65 GAGAACTCCCATGTAAGACCATATCT
*
13557244 GTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGACACCGATATG
1 GTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGACACCGAGATG
13557309 AGAACTCCCATGTAAGACCATATCT
66 AGAACTCCCATGTAAGACCATATCT
13557334 G
1 G
13557335 GGATATGGTA
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
89 3 0.04
90 79 0.96
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.23
Consensus pattern (90 bp):
GTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGACACCGAGATG
AGAACTCCCATGTAAGACCATATCT
Found at i:13570130 original size:63 final size:63
Alignment explanation
Indices: 13570045--13570170 Score: 225
Period size: 63 Copynumber: 2.0 Consensus size: 63
13570035 ATTTACTAAT
* *
13570045 CTCACGTAATACCTTCTAACATTTTGGAGATATAAGGTAGGCAAGGGAAGGAGAAATAAAGAG
1 CTCACGTAATACCTTCTAACATTTTGGAAAAATAAGGTAGGCAAGGGAAGGAGAAATAAAGAG
*
13570108 CTCACGTAATACCTTCTAACATTTTGGAAAAATAAGGTAGGCAAGGGAAGGAGAGATAAAGAG
1 CTCACGTAATACCTTCTAACATTTTGGAAAAATAAGGTAGGCAAGGGAAGGAGAAATAAAGAG
13570171 GTGATCTTGT
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
63 60 1.00
ACGTcount: A:0.40, C:0.13, G:0.25, T:0.21
Consensus pattern (63 bp):
CTCACGTAATACCTTCTAACATTTTGGAAAAATAAGGTAGGCAAGGGAAGGAGAAATAAAGAG
Found at i:13576422 original size:21 final size:21
Alignment explanation
Indices: 13576398--13576440 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
13576388 ATAACACACC
13576398 AACAGAAGCTCATAAGAGTTG
1 AACAGAAGCTCATAAGAGTTG
* *
13576419 AACAGAAGCTCGTGAGAGTTG
1 AACAGAAGCTCATAAGAGTTG
13576440 A
1 A
13576441 TCCACCCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.14, G:0.28, T:0.19
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGTTG
Found at i:13579172 original size:67 final size:68
Alignment explanation
Indices: 13579038--13579440 Score: 400
Period size: 68 Copynumber: 6.0 Consensus size: 68
13579028 TTAGAGTTAG
* * * **
13579038 CGATTTAAGATCGCGCTTCTATCTTACAGTCCGTTGATTTAAGATCACAACTAACCTACATAGCA
1 CGATTTAAGATCGTGTTTCTATCTTACAGTCCATTGATTTAAGATCACGGCTAACCTACATAGCA
13579103 TGC
66 TGC
* * * * *
13579106 CGACTTAAGATTGTATTTCT-TCTTACAGTCCATTGATTTAAGATCATGGCTAACCTACATAACA
1 CGATTTAAGATCGTGTTTCTATCTTACAGTCCATTGATTTAAGATCACGGCTAACCTACATAGCA
13579170 TGC
66 TGC
* * * * * * * *
13579173 CGATTTAAGATTGTGCTTCTATATTATAGTCCAGTGATTTGAGATCACGGCTAGCCTGCATAGCA
1 CGATTTAAGATCGTGTTTCTATCTTACAGTCCATTGATTTAAGATCACGGCTAACCTACATAGCA
*
13579238 TGT
66 TGC
** * * * * * *
13579241 CGATTTAAGATCACGCTTCTATCTT-CAATCCGTT-ACTTTAAAATCATGACTAACCTACATAGC
1 CGATTTAAGATCGTGTTTCTATCTTACAGTCCATTGA-TTTAAGATCACGGCTAACCTACATAGC
*
13579304 ACGC
65 ATGC
* * *
13579308 CGATTTAAGATCGCGTTTCTATCTTATAGTCCGCTT-ATTTAAGATCACGGCTAACCTACATAGC
1 CGATTTAAGATCGTGTTTCTATCTTACAGTCC-ATTGATTTAAGATCACGGCTAACCTACATAGC
13579372 ATGC
65 ATGC
* ** * * * * * *
13579376 CGATTTAAAATCACGTTTTTATCTTATAGTCCATTGATTTAATATCACAGCTAGCCTAAATAGCA
1 CGATTTAAGATCGTGTTTCTATCTTACAGTCCATTGATTTAAGATCACGGCTAACCTACATAGCA
13579441 GTTTTCTCAG
Statistics
Matches: 275, Mismatches: 55, Indels: 10
0.81 0.16 0.03
Matches are distributed among these distances:
66 1 0.00
67 112 0.41
68 159 0.58
69 3 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (68 bp):
CGATTTAAGATCGTGTTTCTATCTTACAGTCCATTGATTTAAGATCACGGCTAACCTACATAGCA
TGC
Found at i:13579281 original size:135 final size:135
Alignment explanation
Indices: 13579038--13579400 Score: 408
Period size: 135 Copynumber: 2.7 Consensus size: 135
13579028 TTAGAGTTAG
* * * **
13579038 CGATTTAAGATCGCGCTTCTATCTTACAGTCCGTTGATTTAAGATCACAACTAACCTACATAGCA
1 CGATTTAAGATCGCGCTTCTATATTATAGTCCGCTGATTTAAGATCACGGCTAACCTACATAGCA
* * ***** * * * *
13579103 TGCCGACTTAAGATTGTATTTCT-TCTTACAGTCCATTGA-TTTAAGATCATGGCTAACCTACAT
66 TGCCGATTTAAAATCACGCTTCTATCTT-CAATCCGTT-ACTTTAAAATCATGACTAACCTACAT
*
13579166 AACATGC
129 AACACGC
* * * * *
13579173 CGATTTAAGATTGTGCTTCTATATTATAGTCCAG-TGATTTGAGATCACGGCTAGCCTGCATAGC
1 CGATTTAAGATCGCGCTTCTATATTATAGTCC-GCTGATTTAAGATCACGGCTAACCTACATAGC
* *
13579237 ATGTCGATTTAAGATCACGCTTCTATCTTCAATCCGTTACTTTAAAATCATGACTAACCTACATA
65 ATGCCGATTTAAAATCACGCTTCTATCTTCAATCCGTTACTTTAAAATCATGACTAACCTACATA
*
13579302 GCACGC
130 ACACGC
* * *
13579308 CGATTTAAGATCGCGTTTCTATCTTATAGTCCGCTTATTTAAGATCACGGCTAACCTACATAGCA
1 CGATTTAAGATCGCGCTTCTATATTATAGTCCGCTGATTTAAGATCACGGCTAACCTACATAGCA
* *
13579373 TGCCGATTTAAAATCACGTTTTTATCTT
66 TGCCGATTTAAAATCACGCTTCTATCTT
13579401 ATAGTCCATT
Statistics
Matches: 190, Mismatches: 34, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
134 2 0.01
135 183 0.96
136 5 0.03
ACGTcount: A:0.28, C:0.22, G:0.15, T:0.34
Consensus pattern (135 bp):
CGATTTAAGATCGCGCTTCTATATTATAGTCCGCTGATTTAAGATCACGGCTAACCTACATAGCA
TGCCGATTTAAAATCACGCTTCTATCTTCAATCCGTTACTTTAAAATCATGACTAACCTACATAA
CACGC
Found at i:13579405 original size:203 final size:203
Alignment explanation
Indices: 13579038--13579432 Score: 517
Period size: 203 Copynumber: 1.9 Consensus size: 203
13579028 TTAGAGTTAG
* * *
13579038 CGATTTAAGATCGCGCTTCTATCTTACAGTCCGTTGATTTAAGATCACAACTAACCTACATAGCA
1 CGATTTAAGATCACGCTTCTATCTTACAATCCGTTGATTTAAAATCACAACTAACCTACATAGCA
* * * *
13579103 TGCCGACTTAAGATTGTATTTCTTCTTACAGTCCATTGATTTAAGATCATGGCTAACCTACATAA
66 CGCCGACTTAAGATCGCATTTCTTCTTACAGTCCATTGATTTAAGATCACGGCTAACCTACATAA
* *** * *
13579168 CATGCCGATTTAAGATTGTGCTTCTATATTATAGTCCAGTGATTTGAGATCACGGCTAGCCTGCA
131 CATGCCGATTTAAAATCACGCTTCTATATTATAGTCCAGTGATTTAAGATCACAGCTAGCCTGCA
13579233 TAGCATGT
196 TAGCATGT
**
13579241 CGATTTAAGATCACGCTTCTATCTT-CAATCCGTT-ACTTTAAAATCATGACTAACCTACATAGC
1 CGATTTAAGATCACGCTTCTATCTTACAATCCGTTGA-TTTAAAATCACAACTAACCTACATAGC
* * * *
13579304 ACGCCGATTTAAGATCGCGTTTCTATCTTATAGTCCGCTT-ATTTAAGATCACGGCTAACCTACA
65 ACGCCGACTTAAGATCGCATTTCT-TCTTACAGTCC-ATTGATTTAAGATCACGGCTAACCTACA
* * * * * *
13579368 TAGCATGCCGATTTAAAATCACGTTTTTATCTTATAGTCCATTGATTTAATATCACAGCTAGCCT
128 TAACATGCCGATTTAAAATCACGCTTCTATATTATAGTCCAGTGATTTAAGATCACAGCTAGCCT
13579433 AAATAGCAGT
Statistics
Matches: 164, Mismatches: 25, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
201 1 0.01
202 51 0.31
203 110 0.67
204 2 0.01
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (203 bp):
CGATTTAAGATCACGCTTCTATCTTACAATCCGTTGATTTAAAATCACAACTAACCTACATAGCA
CGCCGACTTAAGATCGCATTTCTTCTTACAGTCCATTGATTTAAGATCACGGCTAACCTACATAA
CATGCCGATTTAAAATCACGCTTCTATATTATAGTCCAGTGATTTAAGATCACAGCTAGCCTGCA
TAGCATGT
Found at i:13583993 original size:18 final size:19
Alignment explanation
Indices: 13583956--13583996 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
13583946 CCACTTTGCT
13583956 AGCTCGCCACTCTGCTCCC
1 AGCTCGCCACTCTGCTCCC
* *
13583975 AGCTCGCTAC-CTTCTCCC
1 AGCTCGCCACTCTGCTCCC
13583993 AGCT
1 AGCT
13583997 TGCTGGTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.12, C:0.49, G:0.15, T:0.24
Consensus pattern (19 bp):
AGCTCGCCACTCTGCTCCC
Found at i:13592814 original size:21 final size:21
Alignment explanation
Indices: 13592790--13592832 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
13592780 TAGATACTTA
*
13592790 TGCACAAA-TTTAATTTCTAAT
1 TGCA-AAACTTTAATATCTAAT
13592811 TGCAAAACTTTAATATCTAAT
1 TGCAAAACTTTAATATCTAAT
13592832 T
1 T
13592833 TTCAAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.42
Consensus pattern (21 bp):
TGCAAAACTTTAATATCTAAT
Found at i:13595895 original size:27 final size:27
Alignment explanation
Indices: 13595849--13595900 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
13595839 ATGTGCTGTT
* *
13595849 GAAGTTTCGAGAAACTCAAATATAGAG
1 GAAGTTTCAAGAAACTCAAAAATAGAG
13595876 GAAGTTTCAAGAAA-TCCAAAAATAG
1 GAAGTTTCAAGAAACT-CAAAAATAG
13595901 GCATAATAGG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 1 0.05
27 21 0.95
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (27 bp):
GAAGTTTCAAGAAACTCAAAAATAGAG
Found at i:13595947 original size:27 final size:27
Alignment explanation
Indices: 13595916--13595995 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 27
13595906 ATAGGTTGAG
13595916 AAGCTTTAAGAAACCTAAAAATAGAGA
1 AAGCTTTAAGAAACCTAAAAATAGAGA
* * *
13595943 AAGCTTAAAAAAATCTAAAAATA-A-A
1 AAGCTTTAAGAAACCTAAAAATAGAGA
* *
13595968 ACAG-GTTAAGAAACCCAAAAAATAGAGA
1 A-AGCTTTAAGAAA-CCTAAAAATAGAGA
13595996 TAAGATATAA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
25 8 0.20
26 11 0.27
27 21 0.51
28 1 0.02
ACGTcount: A:0.60, C:0.11, G:0.12, T:0.16
Consensus pattern (27 bp):
AAGCTTTAAGAAACCTAAAAATAGAGA
Found at i:13597145 original size:16 final size:16
Alignment explanation
Indices: 13597124--13597157 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
13597114 AATTATTGAT
*
13597124 AGTGCGTCCAGTTGGA
1 AGTGCGTCCAGCTGGA
13597140 AGTGCGTCCAGCTGGA
1 AGTGCGTCCAGCTGGA
13597156 AG
1 AG
13597158 CGCTTTTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.21, G:0.38, T:0.21
Consensus pattern (16 bp):
AGTGCGTCCAGCTGGA
Found at i:13602147 original size:49 final size:47
Alignment explanation
Indices: 13602084--13602178 Score: 145
Period size: 49 Copynumber: 2.0 Consensus size: 47
13602074 TCCCTCTCCT
*
13602084 TCTTCCCCACCATCCATCCTCCTACTCTGATTCTTTCCTTCTCTCCCCC
1 TCTTCCCCACCATCCATCCTCCTACTATGATTCTTTCC--CTCTCCCCC
* *
13602133 TCTTCCCCATCATCCCTCCTCCTACTATGATTCTTTCCCTCTCCCC
1 TCTTCCCCACCATCCATCCTCCTACTATGATTCTTTCCCTCTCCCC
13602179 TACCGTCCCT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 8 0.19
49 35 0.81
ACGTcount: A:0.11, C:0.51, G:0.02, T:0.37
Consensus pattern (47 bp):
TCTTCCCCACCATCCATCCTCCTACTATGATTCTTTCCCTCTCCCCC
Found at i:13605506 original size:3 final size:3
Alignment explanation
Indices: 13605493--13605523 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
13605483 CTAAGCAAAT
13605493 TAA TGAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA
13605524 GCAAACTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:13610014 original size:3 final size:3
Alignment explanation
Indices: 13610006--13610035 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
13609996 AGCAGAAGGG
13610006 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
13610036 AAAACCAGTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:13610610 original size:19 final size:19
Alignment explanation
Indices: 13610588--13610626 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
13610578 GAATTGTTCT
13610588 AAAAAGATAA-AATAGAGAG
1 AAAAAGATAACAA-AGAGAG
*
13610607 AAAAATATAACAAAGAGAG
1 AAAAAGATAACAAAGAGAG
13610626 A
1 A
13610627 TAAACAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 16 0.89
20 2 0.11
ACGTcount: A:0.69, C:0.03, G:0.18, T:0.10
Consensus pattern (19 bp):
AAAAAGATAACAAAGAGAG
Found at i:13611679 original size:20 final size:20
Alignment explanation
Indices: 13611634--13611680 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
13611624 AAATTATATG
* *
13611634 TATTACACATGATTTTAAAT
1 TATTAAACATGATTTAAAAT
*
13611654 TGTTAAACAT-ATTTAAAAT
1 TATTAAACATGATTTAAAAT
13611673 ATATTAAA
1 -TATTAAA
13611681 AATTTCATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 8 0.36
20 14 0.64
ACGTcount: A:0.47, C:0.06, G:0.04, T:0.43
Consensus pattern (20 bp):
TATTAAACATGATTTAAAAT
Found at i:13618405 original size:31 final size:28
Alignment explanation
Indices: 13618370--13618426 Score: 69
Period size: 28 Copynumber: 1.9 Consensus size: 28
13618360 CTGTAGTTCA
*
13618370 TTGGGAGGAAAAACAGCCCAATAATGCATTT
1 TTGGG-GG-AAAA-AGCCCAAGAATGCATTT
*
13618401 TTGGGGGTAAAAGCCCAAGAATGCAT
1 TTGGGGGAAAAAGCCCAAGAATGCAT
13618427 ATGAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 14 0.58
29 3 0.12
30 2 0.08
31 5 0.21
ACGTcount: A:0.37, C:0.16, G:0.26, T:0.21
Consensus pattern (28 bp):
TTGGGGGAAAAAGCCCAAGAATGCATTT
Found at i:13632626 original size:22 final size:21
Alignment explanation
Indices: 13632587--13632628 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
13632577 CAAACTTTAA
* *
13632587 TAAAATTTAATATTAATATTG
1 TAAAATTAAATATCAATATTG
13632608 TAAATATTAAATATCAATATT
1 TAAA-ATTAAATATCAATATT
13632629 TATGGACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (21 bp):
TAAAATTAAATATCAATATTG
Found at i:13635729 original size:32 final size:33
Alignment explanation
Indices: 13635669--13635731 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
13635659 TCCTTGGTAG
* * * *
13635669 TTATAAAAAAAACATGCATATAATTGTAATCAC
1 TTATAAAAAAAACAAGAACATAAATGTAATCAC
13635702 TTAT-AAAAAAACAAGAACATAAATGTAATC
1 TTATAAAAAAAACAAGAACATAAATGTAATC
13635732 CTTGGGACTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
32 22 0.85
33 4 0.15
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.27
Consensus pattern (33 bp):
TTATAAAAAAAACAAGAACATAAATGTAATCAC
Found at i:13653484 original size:31 final size:31
Alignment explanation
Indices: 13653285--13653485 Score: 163
Period size: 31 Copynumber: 6.5 Consensus size: 31
13653275 TGTCCAACAC
* * ** *
13653285 CGGTACATAGTACTTGATAAAATATAAACAC
1 CGGTACATAGTACCTGATATAATATAGTCAT
* * * * * * **
13653316 CAGCACATGGTGCCTGATACAAAATAAACAT
1 CGGTACATAGTACCTGATATAATATAGTCAT
* * *
13653347 CGGTATATAGTACTTGATATAATATAGTCAC
1 CGGTACATAGTACCTGATATAATATAGTCAT
* ** *
13653378 CGATATGTAGTACCTGATATAATAGAGTCAT
1 CGGTACATAGTACCTGATATAATATAGTCAT
* *
13653409 CGATACGTAGTACCTGATATAATATAGTCA-
1 CGGTACATAGTACCTGATATAATATAGTCAT
*
13653439 CTAGTACATAGTACCTGATATAATAT-GATCAT
1 C-GGTACATAGTACCTGATATAATATAG-TCAT
13653471 CGGTACATAGTACCT
1 CGGTACATAGTACCT
13653486 AATACTTTTA
Statistics
Matches: 137, Mismatches: 30, Indels: 6
0.79 0.17 0.03
Matches are distributed among these distances:
30 2 0.01
31 134 0.98
32 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (31 bp):
CGGTACATAGTACCTGATATAATATAGTCAT
Found at i:13653484 original size:62 final size:61
Alignment explanation
Indices: 13653285--13653485 Score: 197
Period size: 62 Copynumber: 3.2 Consensus size: 61
13653275 TGTCCAACAC
* * ** * * * * * * *
13653285 CGGTACATAGTACTTGATAAAATATAAACACCAGCACATGGTGCCTGATACAAAATAAACAT
1 CGGTACATAGTACCTGATATAATATAGTCA-CAGTACATAGTACCTGATATAATATGATCAT
* * * **
13653347 CGGTATATAGTACTTGATATAATATAGTCACCGATATGTAGTACCTGATATAATA-GAGTCAT
1 CGGTACATAGTACCTGATATAATATAGTCACAG-TACATAGTACCTGATATAATATGA-TCAT
* *
13653409 CGATACGTAGTACCTGATATAATATAGTCACTAGTACATAGTACCTGATATAATATGATCAT
1 CGGTACATAGTACCTGATATAATATAGTCAC-AGTACATAGTACCTGATATAATATGATCAT
13653471 CGGTACATAGTACCT
1 CGGTACATAGTACCT
13653486 AATACTTTTA
Statistics
Matches: 112, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
61 3 0.03
62 106 0.95
63 3 0.03
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (61 bp):
CGGTACATAGTACCTGATATAATATAGTCACAGTACATAGTACCTGATATAATATGATCAT
Found at i:13658146 original size:3 final size:3
Alignment explanation
Indices: 13658138--13658171 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
13658128 TTTTATTTAT
*
13658138 TTA TTA TTA TTG TTA TTA TTA TTA TTA TT- TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
13658172 CTTTCTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
2 2 0.07
3 26 0.93
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:13664781 original size:18 final size:17
Alignment explanation
Indices: 13664737--13664782 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
13664727 AAAAGTGACT
*
13664737 TTGATATTGAAAGTAAA
1 TTGAAATTGAAAGTAAA
*
13664754 TTGTACATTGAAAGTGAAA
1 TTG-AAATTGAAAGT-AAA
13664773 TTGAAATTGA
1 TTGAAATTGA
13664783 GAAAGTGATT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 16 0.64
19 6 0.24
ACGTcount: A:0.43, C:0.02, G:0.20, T:0.35
Consensus pattern (17 bp):
TTGAAATTGAAAGTAAA
Found at i:13664907 original size:21 final size:21
Alignment explanation
Indices: 13664881--13664945 Score: 78
Period size: 21 Copynumber: 3.1 Consensus size: 21
13664871 GGCCTTGCCG
13664881 ATTAGGCACTATATGTGTCGT
1 ATTAGGCACTATATGTGTCGT
* *
13664902 ATTAGGCACCATGTGTGTC-T
1 ATTAGGCACTATATGTGTCGT
* *
13664922 TTTCAGGCACTTTATGTGTCGT
1 ATT-AGGCACTATATGTGTCGT
13664944 AT
1 AT
13664946 ACTGCTTCTG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
20 3 0.09
21 30 0.86
22 2 0.06
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (21 bp):
ATTAGGCACTATATGTGTCGT
Found at i:13668693 original size:16 final size:14
Alignment explanation
Indices: 13668672--13668708 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 14
13668662 GAAAACCACA
13668672 TTCATTTCTAAATGAT
1 TTCATTTCTAAAT--T
13668688 TTCATTTCTAAATT
1 TTCATTTCTAAATT
13668702 TTCATTT
1 TTCATTT
13668709 TCATTTTGGA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 8 0.38
16 13 0.62
ACGTcount: A:0.27, C:0.14, G:0.03, T:0.57
Consensus pattern (14 bp):
TTCATTTCTAAATT
Found at i:13681563 original size:50 final size:50
Alignment explanation
Indices: 13681452--13681638 Score: 173
Period size: 50 Copynumber: 3.8 Consensus size: 50
13681442 GGGGAAAGAG
* *
13681452 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGAACCGAGATGAGAG
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAA
** * * *
13681502 GTCCCCCGTAAGACCATGTCTAGGACATGGCATGGGCACCGATATGAGAA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAA
* * * * * * *
13681552 TTCTCATGTAAGGCCATATCTGGGATATGGCATTGGCA--GTACAGGA-AA
1 GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAA
* * * *
13681600 CATCCCATGTAAGACCATGTTTGGGAAATGGCTTTGGCA
1 -GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
13681639 TGTTATTATC
Statistics
Matches: 110, Mismatches: 25, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
48 3 0.03
49 35 0.32
50 72 0.65
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
GTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAA
Found at i:13684469 original size:9 final size:9
Alignment explanation
Indices: 13684455--13684481 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
13684445 TTATTTTAGG
13684455 TTAATTAAT
1 TTAATTAAT
13684464 TTAATTAAT
1 TTAATTAAT
13684473 TTAATTAAT
1 TTAATTAAT
13684482 ATTTTAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
TTAATTAAT
Found at i:13684991 original size:12 final size:11
Alignment explanation
Indices: 13684966--13685003 Score: 53
Period size: 10 Copynumber: 3.5 Consensus size: 11
13684956 GAACATGGTG
13684966 AATTTTA-ATT
1 AATTTTATATT
13684976 AATTTTATAGTT
1 AATTTTATA-TT
13684988 AATTTT-TATT
1 AATTTTATATT
13684998 AATTTT
1 AATTTT
13685004 GACTATTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
10 15 0.58
11 3 0.12
12 8 0.31
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.63
Consensus pattern (11 bp):
AATTTTATATT
Found at i:13688867 original size:323 final size:323
Alignment explanation
Indices: 13688273--13688915 Score: 1092
Period size: 323 Copynumber: 2.0 Consensus size: 323
13688263 TTAGAAGAAG
*
13688273 TTCAACCAAGTGTTGAAATTCCAGTTTCACCAGAACTAGAATCTGCAAAACCCAACAAAGTAACC
1 TTCAACCAAGTGTTAAAATTCCAGTTTCACCAGAACTAGAATCTGCAAAACCCAACAAAGTAACC
* *
13688338 TCAGGACCAGCTAATTCTGATCAACTAACAACATCGTTAGATGCAGAATTTTTGAAGACGAATAA
66 TCAGGACCAGCTAATTCTGATAAACTAACAACATCGTTAGATGCAGAATTTCTGAAGACGAATAA
*
13688403 ACCAGAATCAGTCCTAGTAATAAAACCACCACCACCCTACCCTCAAAGACTTCAGAAACAGAAGT
131 ACCAGAATCAGTCCTAGTAATAAAACCACCACCACCCTACCCTCAAAGACTTCAGAAACAGAAGC
* *
13688468 AGGAGATTCAATTTAAGAAGTTCCTTGACGTACTCAAGCAACTTCACATCAACATCCCGTTGGTT
196 AGGAGATTCAATTCAAGAAGTTCCTTGACGTACTCAAGCAAATTCACATCAACATCCCGTTGGTT
* * *
13688533 GAAGCACTTGAGCAAATG-CTAAACTACGTCAAGTTTATGAAATATATCTTGTTTAAGAAACGA
261 GAAGCACTTGAGCAAATGTC-AAACTACGTCAAGTTCATGAAAGATATCTTGTCTAAGAAACGA
*
13688596 TTCAATCAAGTGTTAAAATTCCAGTTTCACCAGAACTAGAATCTGCAAAACCCGAA-AAAGTAAC
1 TTCAACCAAGTGTTAAAATTCCAGTTTCACCAGAACTAGAATCTGCAAAACCC-AACAAAGTAAC
* * *
13688660 CTCAGGACCAGCTAATTCTGATAAACTAACAACGTCGTTAGATGCAGAGTTTCTGAAGACGAATC
65 CTCAGGACCAGCTAATTCTGATAAACTAACAACATCGTTAGATGCAGAATTTCTGAAGACGAATA
* *
13688725 AACCAGAATCAGTCTTAGTAATGAAACCACCACCACCCTACCCTCAAAGACTTCAGAAACAGAAG
130 AACCAGAATCAGTCCTAGTAATAAAACCACCACCACCCTACCCTCAAAGACTTCAGAAACAGAAG
* *
13688790 CAGGAGATTCAATTCAAGAAGTTCCTTGATGTACTCAAGCAAATTCACATCAACATTCCGTTGGT
195 CAGGAGATTCAATTCAAGAAGTTCCTTGACGTACTCAAGCAAATTCACATCAACATCCCGTTGGT
*
13688855 TGAAGCACTTGAGCAAATGTCGAACTACGTCAAGTTCATGAAAGATATCTTGTCTAAGAAA
260 TGAAGCACTTGAGCAAATGTCAAACTACGTCAAGTTCATGAAAGATATCTTGTCTAAGAAA
13688916 TGAAGACTTA
Statistics
Matches: 300, Mismatches: 18, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
323 297 0.99
324 3 0.01
ACGTcount: A:0.38, C:0.23, G:0.16, T:0.24
Consensus pattern (323 bp):
TTCAACCAAGTGTTAAAATTCCAGTTTCACCAGAACTAGAATCTGCAAAACCCAACAAAGTAACC
TCAGGACCAGCTAATTCTGATAAACTAACAACATCGTTAGATGCAGAATTTCTGAAGACGAATAA
ACCAGAATCAGTCCTAGTAATAAAACCACCACCACCCTACCCTCAAAGACTTCAGAAACAGAAGC
AGGAGATTCAATTCAAGAAGTTCCTTGACGTACTCAAGCAAATTCACATCAACATCCCGTTGGTT
GAAGCACTTGAGCAAATGTCAAACTACGTCAAGTTCATGAAAGATATCTTGTCTAAGAAACGA
Found at i:13692970 original size:22 final size:21
Alignment explanation
Indices: 13692945--13692988 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
13692935 TGATAAACTT
13692945 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
13692967 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
13692988 T
1 T
13692989 CAACTCAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:13701433 original size:3 final size:3
Alignment explanation
Indices: 13701425--13701494 Score: 140
Period size: 3 Copynumber: 23.3 Consensus size: 3
13701415 ACTTAGTTGT
13701425 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
13701473 TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA T
13701495 CATGACCCCT
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 67 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:13704566 original size:18 final size:18
Alignment explanation
Indices: 13704543--13704578 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
13704533 ATATATTTTA
13704543 ATTTTAATACTTTTTAAT
1 ATTTTAATACTTTTTAAT
*
13704561 ATTTTAATATTTTTTAAT
1 ATTTTAATACTTTTTAAT
13704579 TAAAATAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTTAATACTTTTTAAT
Found at i:13721529 original size:20 final size:20
Alignment explanation
Indices: 13721504--13721544 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
13721494 TAGATCAAGC
13721504 AACAAAATCTTCGAATTCTT
1 AACAAAATCTTCGAATTCTT
13721524 AACAAAATCTTCGAATTCTT
1 AACAAAATCTTCGAATTCTT
13721544 A
1 A
13721545 GTAATATACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.41, C:0.20, G:0.05, T:0.34
Consensus pattern (20 bp):
AACAAAATCTTCGAATTCTT
Found at i:13724774 original size:8 final size:8
Alignment explanation
Indices: 13724761--13724786 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
13724751 GGGTAATTAC
13724761 ACTATTTA
1 ACTATTTA
13724769 ACTATTTA
1 ACTATTTA
13724777 ACTATTTA
1 ACTATTTA
13724785 AC
1 AC
13724787 ACTAAAGAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (8 bp):
ACTATTTA
Found at i:13732652 original size:3 final size:3
Alignment explanation
Indices: 13732644--13732682 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
13732634 AATCTAGTCC
13732644 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13732683 CTTTTTAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13739342 original size:173 final size:174
Alignment explanation
Indices: 13738980--13739767 Score: 968
Period size: 175 Copynumber: 4.5 Consensus size: 174
13738970 ATTAGTGAAT
* ** * *
13738980 ATCGAAAACA-AAGCCTTGCCTCCATCGGTTGTAGTGGAAATGATTAAAGATAGCAGATCTTGCC
1 ATCGAAGACACAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCC
*
13739044 TTCCCGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTG
66 TTCCTGCGTTAACAGCGAAGCAGATCG-AAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTG
* * * *
13739109 GTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAG
130 GTTAAAGACAACAGATCTTGCCTTCCTGCCTTGACAGCGAAGCAG
* *
13739154 ATCGAA-A-AAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCC
1 ATCGAAGACACAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCC
* ** *
13739217 TTCCTGCGTTAACAGCAAAGCAGATCGAAA-AAAGCCTTGCCTCCATTAGTTGCAGTGGAGTTGG
66 TTCCTGCGTTAACAGCGAAGCAGATCGAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGG
* * *
13739281 TTAAAGATAACAGATCTTGCCTTCTTGCATTGACAGCGAAGCAG
131 TTAAAGACAACAGATCTTGCCTTCCTGCCTTGACAGCGAAGCAG
* * * * *
13739325 ATCGAAGACACAAGCCTTGCCTCCCTCGATTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCC
1 ATCGAAGACACAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCC
* * *
13739390 TTCCTGCGTTAACAGCGAACCAGATCGAAAACAAAGCCTTGCCTCTATCGGTTGCAGTGGAGTTG
66 TTCCTGCGTTAACAGCGAAGCAGATCG-AAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTG
* * *
13739455 GTTGAAGACAACAGAGCTTGCCTTCCTGCCTTGACAGCGAAACAG
130 GTTAAAGACAACAGATCTTGCCTTCCTGCCTTGACAGCGAAGCAG
* * * * *
13739500 ATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAATAGAGCTGGTTGAAGACAACAGATCTTGC
1 ATCGAAGACACAAGCCTTGCCTC-CATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
* * * * **
13739564 CTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTACCT--ATCTTGGTTATAGTGGA
65 CTTCCTGCGTTAACAGCGAAGCAGATCGAA-ACA-AAGCCTTGCCTCCATC--GGTTGCAGTGGA
* * *
13739627 GCTGGTTGAAGACAACATATCTTGCCTTCCTTCCTTGACAGCGAAGCAG
126 GCTGGTTAAAGACAACAGATCTTGCCTTCCTGCCTTGACAGCGAAGCAG
* * * *
13739676 ATCGAAGACACAAACCTTGTCT-CACTCGGTTGTAGTGGAGCTGGTTGAAA-ACAACAGGTCTTG
1 ATCGAAGACACAAGCCTTGCCTCCA-TCGGTTGTAGTGGAGCTGGTT-AAAGATAACAGATCTTG
* *
13739739 CCTTCCT--GTTGACAGCGGAGCAGATCGAA
64 CCTTCCTGCGTTAACAGCGAAGCAGATCGAA
13739768 GACAGCAAAT
Statistics
Matches: 541, Mismatches: 60, Indels: 26
0.86 0.10 0.04
Matches are distributed among these distances:
171 77 0.14
172 5 0.01
173 149 0.28
174 35 0.06
175 150 0.28
176 123 0.23
177 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (174 bp):
ATCGAAGACACAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCC
TTCCTGCGTTAACAGCGAAGCAGATCGAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGG
TTAAAGACAACAGATCTTGCCTTCCTGCCTTGACAGCGAAGCAG
Found at i:13739389 original size:88 final size:87
Alignment explanation
Indices: 13738980--13739771 Score: 929
Period size: 88 Copynumber: 9.1 Consensus size: 87
13738970 ATTAGTGAAT
* ** * *
13738980 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAAATGATTAAAGATAGCAGATCTTGCCT
1 ATCGAAGACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCT
* *
13739045 TCCCGCGTTAACAGCGAAGCAG
66 TCCTGCGTTGACAGCGAAGCAG
* * *
13739067 ATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTGCCT
1 ATCGAAGACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCT
*
13739132 TCCTGCGTTAACAGCGAAGCAG
66 TCCTGCGTTGACAGCGAAGCAG
* *
13739154 ATCGAA-AAAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCT
1 ATCGAAGACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCT
* *
13739218 TCCTGCGTTAACAGCAAAGCAG
66 TCCTGCGTTGACAGCGAAGCAG
** * *
13739240 ATCGAA-A-AAAGCCTTGCCTCCATTAGTTGCAGTGGAGTTGGTTAAAGATAACAGATCTTGCCT
1 ATCGAAGACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCT
* *
13739303 TCTTGCATTGACAGCGAAGCAG
66 TCCTGCGTTGACAGCGAAGCAG
* * * * *
13739325 ATCGAAGACACAAGCCTTGCCTCCCTCGATTGTAGTGGAGCAGGTCAAAGATAGCAGATCTTGCC
1 ATCGAAGACA-AAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCC
* *
13739390 TTCCTGCGTTAACAGCGAACCAG
65 TTCCTGCGTTGACAGCGAAGCAG
* * * * * * *
13739413 ATCGAAAACAAAGCCTTGCCTCTATCGGTTGCAGTGGAGTTGGTTGAAGACAACAGAGCTTGCCT
1 ATCGAAGACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCT
* *
13739478 TCCTGCCTTGACAGCGAAACAG
66 TCCTGCGTTGACAGCGAAGCAG
* * * * *
13739500 ATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAATAGAGCTGGTTGAAGACAACAGATCTTGC
1 ATCGAAGACA-AAGCCTTGCCTC-CATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGC
*
13739564 CTTCCTGCATTGACAGCGAAGCAG
64 CTTCCTGCGTTGACAGCGAAGCAG
* * * * * *
13739588 ATCGAAGACACAAACCTTACCT--ATCTTGGTTATAGTGGAGCTGGTTGAAGACAACATATCTTG
1 ATCGAAGACA-AAGCCTTGCCTCCATC--GGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTG
* *
13739651 CCTTCCTTCCTTGACAGCGAAGCAG
63 CCTTCCTGCGTTGACAGCGAAGCAG
* * * *
13739676 ATCGAAGACACAAACCTTGTCT-CACTCGGTTGTAGTGGAGCTGGTTGAAA-ACAACAGGTCTTG
1 ATCGAAGACA-AAGCCTTGCCTCCA-TCGGTTGTAGTGGAGCTGGTT-AAAGATAACAGATCTTG
*
13739739 CCTTCCT--GTTGACAGCGGAGCAG
63 CCTTCCTGCGTTGACAGCGAAGCAG
13739762 ATCGAAGACA
1 ATCGAAGACA
13739772 GCAAATCTTA
Statistics
Matches: 626, Mismatches: 68, Indels: 23
0.87 0.09 0.03
Matches are distributed among these distances:
85 77 0.12
86 111 0.18
87 161 0.26
88 272 0.43
89 3 0.00
90 2 0.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (87 bp):
ATCGAAGACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAACAGATCTTGCCT
TCCTGCGTTGACAGCGAAGCAG
Found at i:13739626 original size:263 final size:260
Alignment explanation
Indices: 13738980--13739776 Score: 902
Period size: 263 Copynumber: 3.1 Consensus size: 260
13738970 ATTAGTGAAT
* * * * ** * * *
13738980 ATCGAA-A-ACAAAGCCTTGCCTCCATCGGTTGTAGTGGAAATGATTAAAGATAGCAGATCTTGC
1 ATCGAAGACACAAA-CCTTGCCTCCATCAGTTGCAATAGAGCTGGTTAAAGACAACAGATCTTGC
* * * *
13739043 CTTCCCGCGTTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTCCATC-GGTTGCAGTGGA
65 CTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAA-CCTTGCCT--ATCTGGTTGTAGTGGA
13739105 GCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAA-AAAGCCT
127 GCTGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCT
* * * *
13739169 TGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGATAACAGATCTTGCCTTCCTGCGTTAACAGC-
192 TGCCT-CATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGAGCTTGCCTTCCTGC-TTGACAGCG
13739233 AAAGCAG
255 AAA-CAG
* * * * * *
13739240 ATCGAA-A-A-AAGCCTTGCCTCCATTAGTTGCAGTGGAGTTGGTTAAAGATAACAGATCTTGCC
1 ATCGAAGACACAAACCTTGCCTCCATCAGTTGCAATAGAGCTGGTTAAAGACAACAGATCTTGCC
* * ** * *
13739302 TTCTTGCATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGATTGTAGTGGAGCA
66 TTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTATCT-GGTTGTAGTGGAGCT
* *
13739367 GGTCAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAACCAGATCGAAAACAAAGCCTTGC
130 GGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGC
*
13739432 CTCTATCGGTTGCAGTGGAGTTGGTTGAAGACAACAGAGCTTGCCTTCCTGCCTTGACAGCGAAA
195 CTC-ATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGAGCTTGCCTTCCTG-CTTGACAGCGAAA
13739497 CAG
258 CAG
* * *
13739500 ATCGAAGACACAAACCTTGCCTCTC-TCGGTTGTAATAGAGCTGGTTGAAGACAACAGATCTTGC
1 ATCGAAGACACAAACCTTGCCTC-CATCAGTTGCAATAGAGCTGGTTAAAGACAACAGATCTTGC
* *
13739564 CTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTACCTATCTTGGTTATAGTGGAGC
65 CTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTATC-TGGTTGTAGTGGAGC
* * * * * * *
13739629 TGGTTGAAGACAACATATCTTGCCTTCCTTCCTTGACAGCGAAGCAGATCGAAGACACAAA-CCT
129 TGGTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A-ACAAAGCCT
* * *
13739693 TGTCTCACTCGGTTGTAGTGGAGCTGGTTGAAAACAACAG-GTCTTGCCTTCCTG-TTGACAGCG
192 TGCCTCA-TCGGTTGCAGTGGAGCTGGTTGAAGACAACAGAG-CTTGCCTTCCTGCTTGACAGCG
* *
13739756 GAGCAG
255 AAACAG
13739762 ATCGAAGACAGCAAA
1 ATCGAAGACA-CAAA
13739777 TCTTACTTTT
Statistics
Matches: 462, Mismatches: 57, Indels: 33
0.84 0.10 0.06
Matches are distributed among these distances:
257 1 0.00
258 69 0.15
259 76 0.16
260 83 0.18
261 5 0.01
262 24 0.05
263 147 0.32
264 52 0.11
265 5 0.01
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24
Consensus pattern (260 bp):
ATCGAAGACACAAACCTTGCCTCCATCAGTTGCAATAGAGCTGGTTAAAGACAACAGATCTTGCC
TTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTATCTGGTTGTAGTGGAGCTG
GTTAAAGATAGCAGATCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCC
TCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGAGCTTGCCTTCCTGCTTGACAGCGAAACAG
Found at i:13741289 original size:3 final size:3
Alignment explanation
Indices: 13741281--13741313 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
13741271 AATCTAGTCC
13741281 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
13741314 ATATACTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:13744293 original size:28 final size:26
Alignment explanation
Indices: 13744248--13744328 Score: 67
Period size: 28 Copynumber: 3.0 Consensus size: 26
13744238 TTTTAAAAGA
*
13744248 TTATTGAAATTAAATGAATAACAAAAAT
1 TTATAGAAATTAAATGAA-AA-AAAAAT
**
13744276 TTATAGAAATTATTTGAAAAAAAAACT
1 TTATAGAAATTAAATGAAAAAAAAA-T
*
13744303 GTA-A-AAATTAAATAGAAAAAACAAAT
1 TTATAGAAATTAAAT-GAAAAAA-AAAT
13744329 GTTCCACTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
25 7 0.16
26 14 0.32
27 8 0.18
28 15 0.34
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.28
Consensus pattern (26 bp):
TTATAGAAATTAAATGAAAAAAAAAT
Found at i:13744622 original size:16 final size:13
Alignment explanation
Indices: 13744587--13744611 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13744577 ATCAAAACGG
13744587 TTTTATTAAAATA
1 TTTTATTAAAATA
13744600 TTTTATTAAAAT
1 TTTTATTAAAAT
13744612 TACTATTTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (13 bp):
TTTTATTAAAATA
Found at i:13746987 original size:39 final size:39
Alignment explanation
Indices: 13746944--13747082 Score: 172
Period size: 39 Copynumber: 3.6 Consensus size: 39
13746934 CATATTCACT
* *
13746944 TTTAAACATATATCACATTACACATATAATCACATAGA-A
1 TTTAAACATATATCACAATACTCATATAATCACATA-ACA
* * *
13746983 TTTAAGCATATACCACAATACTCATATAATTACATAACA
1 TTTAAACATATATCACAATACTCATATAATCACATAACA
* * *
13747022 TTTAAGCATATATCACAAAACTCATGTAATCACATAACA
1 TTTAAACATATATCACAATACTCATATAATCACATAACA
* *
13747061 TTCAAAAATATATCACAATACT
1 TTTAAACATATATCACAATACT
13747083 AAAAAACATG
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
38 1 0.01
39 85 0.99
ACGTcount: A:0.47, C:0.19, G:0.03, T:0.30
Consensus pattern (39 bp):
TTTAAACATATATCACAATACTCATATAATCACATAACA
Found at i:13754433 original size:95 final size:95
Alignment explanation
Indices: 13754334--13754513 Score: 263
Period size: 95 Copynumber: 1.9 Consensus size: 95
13754324 ACCAACATAG
** *
13754334 GTATCAATACTTTGTTGAGTGTATCAATAC-TTTTTGTTTGTTTATCAATTTTTATTAACTTTAA
1 GTATCAATACTTTGTTGAGTGTATCAATACATTTGGGTTT-TTTATCAATTTTTATTAACTTCAA
**
13754398 AGCTCAATTTGGTATCGATACAAAAGGTTAT
65 AGCTCAAAGTGGTATCGATACAAAAGGTTAT
* * * *
13754429 GTATCGATACTTTGTTTAGTGTATCAATACATTTGGGTTTTTTTTCAATTTTTCTTAACTTCAAA
1 GTATCAATACTTTGTTGAGTGTATCAATACATTTGGGTTTTTTATCAATTTTTATTAACTTCAAA
13754494 GCTCAAAGTGGTATCGATAC
66 GCTCAAAGTGGTATCGATAC
13754514 CAACTAAGGG
Statistics
Matches: 75, Mismatches: 9, Indels: 2
0.87 0.10 0.02
Matches are distributed among these distances:
95 68 0.91
96 7 0.09
ACGTcount: A:0.28, C:0.12, G:0.14, T:0.46
Consensus pattern (95 bp):
GTATCAATACTTTGTTGAGTGTATCAATACATTTGGGTTTTTTATCAATTTTTATTAACTTCAAA
GCTCAAAGTGGTATCGATACAAAAGGTTAT
Found at i:13756386 original size:27 final size:27
Alignment explanation
Indices: 13756319--13756388 Score: 106
Period size: 28 Copynumber: 2.6 Consensus size: 27
13756309 TAATGAGATT
*
13756319 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTATAATTGAA
13756346 ATGCACTAAGTGTGCGAGTATAA-TGTAA
1 A-GCACTAAGTGTGCGAGTATAATTG-AA
13756374 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
13756389 TACTTATTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
27 17 0.43
28 23 0.57
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTATAATTGAA
Found at i:13757441 original size:47 final size:47
Alignment explanation
Indices: 13757375--13757709 Score: 379
Period size: 47 Copynumber: 7.1 Consensus size: 47
13757365 TCAAATTTGA
13757375 TGTCC-ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* *
13757421 TGTCCAATTTTGAATGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
** * * *
13757468 TGTCCAATTTTGAGCGTACTAATGCTGTCCATTTTAATGTATGATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* *
13757515 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * * * *
13757562 TGCCCGATTTTGAGTATATTTAAGCTGTCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * * * * * *
13757609 TGTCCAATTTTGAGTATATTTAAGCTGTCTAATTTGATATATAGTGC
1 TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
* * ** *
13757656 TGTCC-ATTTTGAGCATATT-ATTGCTGTCCAATTTGTTGAATAATTGC
1 TGTCCAATTTTGAGTATATTGA-TGCTGTCCATTTTAATGTATAA-TGC
13757703 TGTCCAA
1 TGTCCAA
13757710 AACAGGGTTG
Statistics
Matches: 253, Mismatches: 32, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
45 1 0.00
46 34 0.13
47 217 0.86
48 1 0.00
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.44
Consensus pattern (47 bp):
TGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGC
Found at i:13764189 original size:27 final size:26
Alignment explanation
Indices: 13764122--13764219 Score: 124
Period size: 28 Copynumber: 3.6 Consensus size: 26
13764112 TAATGAGATT
*
13764122 AGCATTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATT-AA
*
13764149 ATGCACTAAGTGTGCGAGTATAATGTAA
1 A-GCACTAAGTGTGCGAGTTTAAT-TAA
*
13764177 AGCACTAAGTGTGCGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGTTTAATTA--A
13764205 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
13764220 TACTTATTAA
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
26 2 0.03
27 21 0.33
28 39 0.62
29 1 0.02
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.31
Consensus pattern (26 bp):
AGCACTAAGTGTGCGAGTTTAATTAA
Found at i:13765264 original size:47 final size:47
Alignment explanation
Indices: 13765203--13765532 Score: 403
Period size: 47 Copynumber: 7.0 Consensus size: 47
13765193 TTTGATTTCC
13765203 ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
1 ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
* *
13765250 ATTTTGAATGTATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
1 ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
* * * *
13765297 ATTTTGAGTGTACTAATGCTGTCCATTTTAATGTATGATGCTGTCCA
1 ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
* * *
13765344 ATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCG
1 ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
* * * * *
13765391 ATTTTGAGTATATTTAAGCTGTCTAATTTGATGTATAATGCTGTCCA
1 ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
* * * * * *
13765438 ATTTTGAGTATATTTAAGCTGTCTAATTTGATGTATAGTGCTGTCC-
1 ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
* * ** *
13765484 ATTTTGAGCATATT-ATTGCTGTCCAATTTGTTGAATAATTGCTGTCCA
1 ATTTTGAGTATATTGA-TGCTGTCCATTTTAATGTATAA-TGCTGTCCA
13765532 A
1 A
13765533 AACAGGGTTG
Statistics
Matches: 254, Mismatches: 26, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
45 1 0.00
46 30 0.12
47 222 0.87
48 1 0.00
ACGTcount: A:0.25, C:0.13, G:0.18, T:0.44
Consensus pattern (47 bp):
ATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAATGCTGTCCA
Found at i:13766893 original size:13 final size:13
Alignment explanation
Indices: 13766875--13766899 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13766865 CGATTAGATT
13766875 AGTAATTAATTTC
1 AGTAATTAATTTC
13766888 AGTAATTAATTT
1 AGTAATTAATTT
13766900 AACAATAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (13 bp):
AGTAATTAATTTC
Found at i:13767217 original size:5 final size:5
Alignment explanation
Indices: 13767209--13767233 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
13767199 TTCATTTTCA
13767209 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
13767234 CAGTTACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:13768025 original size:43 final size:43
Alignment explanation
Indices: 13767977--13768062 Score: 172
Period size: 43 Copynumber: 2.0 Consensus size: 43
13767967 GATCCCATTG
13767977 GATAAGGTCGAACATGATGCCCCAAACTATGATTATGAGACTT
1 GATAAGGTCGAACATGATGCCCCAAACTATGATTATGAGACTT
13768020 GATAAGGTCGAACATGATGCCCCAAACTATGATTATGAGACTT
1 GATAAGGTCGAACATGATGCCCCAAACTATGATTATGAGACTT
13768063 ACTATGGCAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 43 1.00
ACGTcount: A:0.35, C:0.19, G:0.21, T:0.26
Consensus pattern (43 bp):
GATAAGGTCGAACATGATGCCCCAAACTATGATTATGAGACTT
Found at i:13775872 original size:233 final size:233
Alignment explanation
Indices: 13775465--13775929 Score: 903
Period size: 233 Copynumber: 2.0 Consensus size: 233
13775455 AATATTAATA
13775465 CATATTGGATATTCATGAATATTGATTAACTACTGCAGATATAATGGTGCATAATGGTATTTGTT
1 CATATTGGATATTCATGAATATTGATTAACTACTGCAGATATAATGGTGCATAATGGTATTTGTT
13775530 TCTGTAAATTACTGATTTGCTTCAATTTGTTTCGGTGTTAAATTGTGTACTTGTTATTCGTCTGA
66 TCTGTAAATTACTGATTTGCTTCAATTTGTTTCGGTGTTAAATTGTGTACTTGTTATTCGTCTGA
13775595 AGGTGTCTTGATTCTTTCTCCATTTATGAAGTTTATTTAGAATAGCTTACTTGTCCAATGCCTCA
131 AGGTGTCTTGATTCTTTCTCCATTTATGAAGTTTATTTAGAATAGCTTACTTGTCCAATGCCTCA
13775660 AGGAACTTCAGCTTTCTGATTTCAAAATAAAATAAATG
196 AGGAACTTCAGCTTTCTGATTTCAAAATAAAATAAATG
* *
13775698 CATATTGGATATTCGTGAATATTGATTAACTACTGTAGATATAATGGTGCATAATGGTATTTGTT
1 CATATTGGATATTCATGAATATTGATTAACTACTGCAGATATAATGGTGCATAATGGTATTTGTT
13775763 TCTGTAAATTACTGATTTGCTTCAATTTGTTTCGGTGTTAAATTGTGTACTTGTTATTCGTCTGA
66 TCTGTAAATTACTGATTTGCTTCAATTTGTTTCGGTGTTAAATTGTGTACTTGTTATTCGTCTGA
*
13775828 AGGTGTCTTGATTCTTTCTCTATTTATGAAGTTTATTTAGAATAGCTTACTTGTCCAATGCCTCA
131 AGGTGTCTTGATTCTTTCTCCATTTATGAAGTTTATTTAGAATAGCTTACTTGTCCAATGCCTCA
13775893 AGGAACTTCAGCTTTCTGATTTCAAAATAAAATAAAT
196 AGGAACTTCAGCTTTCTGATTTCAAAATAAAATAAAT
13775930 CTTTATTTTT
Statistics
Matches: 229, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
233 229 1.00
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.43
Consensus pattern (233 bp):
CATATTGGATATTCATGAATATTGATTAACTACTGCAGATATAATGGTGCATAATGGTATTTGTT
TCTGTAAATTACTGATTTGCTTCAATTTGTTTCGGTGTTAAATTGTGTACTTGTTATTCGTCTGA
AGGTGTCTTGATTCTTTCTCCATTTATGAAGTTTATTTAGAATAGCTTACTTGTCCAATGCCTCA
AGGAACTTCAGCTTTCTGATTTCAAAATAAAATAAATG
Found at i:13777042 original size:35 final size:33
Alignment explanation
Indices: 13776996--13777061 Score: 96
Period size: 35 Copynumber: 1.9 Consensus size: 33
13776986 CAAACACCAG
* *
13776996 AAAATATTTTTCAGTAAATTATTTTACAGAAAAGT
1 AAAATATTTTTCA-AAAATCATTTTAC-GAAAAGT
13777031 AAAATATTTTTCAAAAATCATTTTACGAAAA
1 AAAATATTTTTCAAAAATCATTTTACGAAAA
13777062 ATATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 5 0.17
34 11 0.38
35 13 0.45
ACGTcount: A:0.48, C:0.08, G:0.06, T:0.38
Consensus pattern (33 bp):
AAAATATTTTTCAAAAATCATTTTACGAAAAGT
Found at i:13778197 original size:16 final size:16
Alignment explanation
Indices: 13778176--13778206 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
13778166 ATATTAGTGT
*
13778176 TATTTAATTTTAAAAA
1 TATTTAATATTAAAAA
13778192 TATTTAATATTAAAA
1 TATTTAATATTAAAA
13778207 TCATACAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:13778561 original size:16 final size:16
Alignment explanation
Indices: 13778540--13778608 Score: 129
Period size: 16 Copynumber: 4.2 Consensus size: 16
13778530 TTTGGTTCGC
13778540 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
13778556 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
13778572 TGTATTGGGATTAGAGG
1 TGTATT-GGATTAGAGG
13778589 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
13778605 TGTA
1 TGTA
13778609 ATAGCTAATC
Statistics
Matches: 52, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
16 36 0.69
17 16 0.31
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:13778586 original size:33 final size:32
Alignment explanation
Indices: 13778540--13778608 Score: 129
Period size: 33 Copynumber: 2.1 Consensus size: 32
13778530 TTTGGTTCGC
13778540 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
13778572 TGTATTGGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATT-GGATTAGAGGTGTATTGGATTAGAGG
13778605 TGTA
1 TGTA
13778609 ATAGCTAATC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 6 0.17
33 30 0.83
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGGTGTATTGGATTAGAGG
Found at i:13778673 original size:44 final size:45
Alignment explanation
Indices: 13778589--13778679 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
13778579 GGATTAGAGG
* * *
13778589 TGTATTGGATTAGAGGTGTAATAGCTAATCCACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
***
13778634 TGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
13778678 TG
1 TG
13778680 GAATAGAGGT
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.27, C:0.07, G:0.29, T:0.37
Consensus pattern (45 bp):
TGTAATGGAATAGAGGCGTAATAGCTAATCCACTGTTTGGTTGAA
Found at i:13778861 original size:16 final size:16
Alignment explanation
Indices: 13778824--13778891 Score: 54
Period size: 16 Copynumber: 4.2 Consensus size: 16
13778814 TTAATCATAT
*
13778824 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
13778840 TT-AAATATATTATAA
1 TTAAAATATATTATAA
*
13778855 TTAAAATATATAATTTAA
1 TTAAAATATAT--TATAA
13778873 -TAAAAT-TATTAATAA
1 TTAAAATATATT-ATAA
13778888 TTAA
1 TTAA
13778892 TATTCTTATA
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
14 4 0.09
15 13 0.30
16 16 0.37
17 6 0.14
18 4 0.09
ACGTcount: A:0.54, C:0.01, G:0.00, T:0.44
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:13778865 original size:18 final size:18
Alignment explanation
Indices: 13778844--13778891 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
13778834 TTATTATTAA
13778844 ATATATTATAATTAAAAT
1 ATATATTATAATTAAAAT
13778862 ATATAATT-TAA-TAAAAT
1 ATAT-ATTATAATTAAAAT
*
13778879 -TAT-TAATAATTAA
1 ATATATTATAATTAA
13778892 TATTCTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 8
0.74 0.03 0.23
Matches are distributed among these distances:
14 1 0.04
15 3 0.12
16 6 0.23
17 6 0.23
18 7 0.27
19 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
ATATATTATAATTAAAAT
Found at i:13778872 original size:14 final size:15
Alignment explanation
Indices: 13778833--13778981 Score: 55
Period size: 15 Copynumber: 9.9 Consensus size: 15
13778823 TTTAAACATA
*
13778833 ATTATTATTAAATAT
1 ATTATAATTAAATAT
13778848 ATTATAATTAAAATAT
1 ATTATAATT-AAATAT
* *
13778864 ATAATTTAATAAAAT-T
1 AT--TATAATTAAATAT
13778880 ATTAATAATT-AATATT
1 ATT-ATAATTAAATA-T
* * *
13778896 CTTAT-A-TGAATTT
1 ATTATAATTAAATAT
* *
13778909 ACTCA-AATCATAATAT
1 A-TTATAATTA-AATAT
*
13778925 A-GATAATTTAACATA-
1 ATTATAA-TTAA-ATAT
*
13778940 ATTATTATTAAATAT
1 ATTATAATTAAATAT
13778955 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
13778969 A-TATAATTTAATA
1 ATTATAATTAAATA
13778982 AAATTCTTAA
Statistics
Matches: 99, Mismatches: 18, Indels: 35
0.65 0.12 0.23
Matches are distributed among these distances:
13 11 0.11
14 19 0.19
15 33 0.33
16 27 0.27
17 4 0.04
18 5 0.05
ACGTcount: A:0.50, C:0.03, G:0.01, T:0.45
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:13778944 original size:107 final size:109
Alignment explanation
Indices: 13778822--13779037 Score: 400
Period size: 107 Copynumber: 2.0 Consensus size: 109
13778812 ATTTAATCAT
13778822 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATA
1 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATA
*
13778887 ATTAATATTCTTATATGAATTTACTCAAATCATAATATA-GATA
66 ATTAATATTCTTATATGAATTTACTAAAATCATAATATATGATA
*
13778930 ATTT-AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATA
1 ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATA
13778994 ATTAATATTCTTATATGAATTTACTAAAATCATAATATATGATA
66 ATTAATATTCTTATATGAATTTACTAAAATCATAATATATGATA
13779038 CTATAAAATA
Statistics
Matches: 105, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
107 97 0.92
108 8 0.08
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (109 bp):
ATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATA
ATTAATATTCTTATATGAATTTACTAAAATCATAATATATGATA
Found at i:13778970 original size:16 final size:16
Alignment explanation
Indices: 13778927--13778972 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
13778917 CATAATATAG
*
13778927 ATAATTTAACATA-ATT
1 ATAA-TTAAAATATATT
*
13778943 ATTATT-AAATATATT
1 ATAATTAAAATATATT
13778958 ATAATTAAAATATAT
1 ATAATTAAAATATAT
13778973 AATTTAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
14 4 0.16
15 10 0.40
16 11 0.44
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATTAAAATATATT
Found at i:13779083 original size:107 final size:107
Alignment explanation
Indices: 13778825--13779088 Score: 362
Period size: 107 Copynumber: 2.5 Consensus size: 107
13778815 TAATCATATT
* *
13778825 TAAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAATT
1 TAAA-ATAATAATTATGAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAATT
* *
13778890 AATATTCTTATATGAATTTACTCAAATCATAATATAGATAATT
65 AATATTCTTATATGAATTTACTAAAATCATAATATAGATAATA
* * * *
13778933 TAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTA
1 TAAAATAATAATTATGAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAATTA
*
13778998 ATATTCTTATATGAATTTACTAAAATCATAATATATGATACTA
66 ATATTCTTATATGAATTTACTAAAATCATAATATA-GATAATA
13779041 TAAAAT-ATAATT-TGAAATA-ATTA-ATATT-AAATATAT--TTTAATTAAAAT
1 TAAAATAATAATTATGAAATATATTATA-ATTAAAATATATAATTTAA-TAAAAT
13779089 ATATGATTTA
Statistics
Matches: 145, Mismatches: 8, Indels: 11
0.88 0.05 0.07
Matches are distributed among these distances:
102 5 0.03
103 6 0.04
104 9 0.06
105 7 0.05
106 6 0.04
107 99 0.68
108 13 0.09
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (107 bp):
TAAAATAATAATTATGAAATATATTATAATTAAAATATATAATTTAATAAAATTATTAATAATTA
ATATTCTTATATGAATTTACTAAAATCATAATATAGATAATA
Found at i:13779103 original size:59 final size:58
Alignment explanation
Indices: 13778927--13779105 Score: 152
Period size: 59 Copynumber: 3.0 Consensus size: 58
13778917 CATAATATAG
* * *
13778927 ATAATTTAACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAAT
1 ATAATTTAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAAT
* ** * * *
13778986 -T--CTT-AATAATTAATATTCTTATATGAATTTACTAAAATCATAATATATGATACT-ATAAAA
1 ATAATTTAAATAATTAATATT-AAATAT--ATTT--T--AATTAAAATATATGAT-TTAATAAAA
13779046 T
58 T
13779047 ATAATTTGAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAAT
1 ATAATTT-AAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAAT
13779106 TTAAAATAAT
Statistics
Matches: 91, Mismatches: 15, Indels: 28
0.68 0.11 0.21
Matches are distributed among these distances:
54 11 0.12
55 5 0.05
56 2 0.02
57 3 0.03
58 2 0.02
59 22 0.24
61 21 0.23
62 2 0.02
63 4 0.04
64 2 0.02
65 4 0.04
66 13 0.14
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (58 bp):
ATAATTTAAATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAAT
Found at i:13779246 original size:44 final size:44
Alignment explanation
Indices: 13779122--13779338 Score: 151
Period size: 44 Copynumber: 4.9 Consensus size: 44
13779112 TAATTATACC
* * **
13779122 TAATAAATTTTCTTATATGAATTTATATATTTTAAAATAATT-A
1 TAATAAATTTTATTATATGAATTTATATAATTTAAAATTCTTGA
* * *
13779165 TTATTAAATATAATT-TAAT-AA--TATATAATTTCATAAAATTCTTGA
1 -TAATAAATTTTATTAT-ATGAATTTATATAA-TT--TAAAATTCTTGA
* ** *
13779210 TAAAAAATTTTATTATATGAATTTATATAATTTAAAATAATTAA
1 TAATAAATTTTATTATATGAATTTATATAATTTAAAATTCTTGA
* * * *
13779254 TATTAAATATAATT-TAAT-AATGATATATAATTTCATAAAATTCTTGA
1 TAATAAATTTTATTAT-ATGAAT-TTATATAA-TT--TAAAATTCTTGA
*
13779301 TAATAAATTTTCTTATATGAATTTATATAATTTAAAAT
1 TAATAAATTTTATTATATGAATTTATATAATTTAAAAT
13779339 AATTAATATT
Statistics
Matches: 130, Mismatches: 27, Indels: 32
0.69 0.14 0.17
Matches are distributed among these distances:
41 6 0.05
42 2 0.02
43 7 0.05
44 66 0.51
45 6 0.05
46 4 0.03
47 35 0.27
48 4 0.03
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (44 bp):
TAATAAATTTTATTATATGAATTTATATAATTTAAAATTCTTGA
Found at i:13779318 original size:91 final size:91
Alignment explanation
Indices: 13779122--13779377 Score: 455
Period size: 91 Copynumber: 2.8 Consensus size: 91
13779112 TAATTATACC
* *
13779122 TAATAAATTTTCTTATATGAATTTATATATTTTAAAATAATTATTATTAAATATAATTTAAT-A-
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
13779185 -ATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
* *
13779210 TAAAAAATTTTATTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
13779275 GATATATAATTTCATAAAATTCTTGA
66 GATATATAATTTCATAAAATTCTTGA
13779301 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
13779366 GATATATAATTT
66 GATATATAATTT
13779378 GTACATTTAA
Statistics
Matches: 159, Mismatches: 6, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
88 58 0.36
89 1 0.01
91 100 0.63
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (91 bp):
TAATAAATTTTCTTATATGAATTTATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT
GATATATAATTTCATAAAATTCTTGA
Found at i:13779372 original size:44 final size:43
Alignment explanation
Indices: 13779145--13779377 Score: 177
Period size: 44 Copynumber: 5.2 Consensus size: 43
13779135 TATATGAATT
* *
13779145 TATATATTTTAAAATAATTATTATTAAATATAATTTAATAATA
1 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATA
* ** * ** * * *
13779188 TATA-ATTTCATAAAATTCTTGATAAAAAATTTTA-TTATATGAATT
1 TATATAATT--TAAAATAATTAATATTAAATATAATTTA-AT-AATA
13779233 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGA
1 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-A
** * * * *
13779277 TATATAATTTCATAAAATTCTTGATAATAAAT-T-TTCTTATATGAATT
1 TATATAA-TT--TAAAATAATTAATATTAAATATAAT-TTA-AT-AATA
13779324 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATGA
1 TATATAATTTAAAATAATTAATATTAAATATAATTTAATAAT-A
13779368 TATATAATTT
1 TATATAATTT
13779378 GTACATTTAA
Statistics
Matches: 144, Mismatches: 30, Indels: 31
0.70 0.15 0.15
Matches are distributed among these distances:
42 4 0.03
43 13 0.09
44 72 0.50
45 17 0.12
46 10 0.07
47 25 0.17
48 3 0.02
ACGTcount: A:0.48, C:0.02, G:0.03, T:0.47
Consensus pattern (43 bp):
TATATAATTTAAAATAATTAATATTAAATATAATTTAATAATA
Found at i:13780394 original size:17 final size:17
Alignment explanation
Indices: 13780372--13780407 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
13780362 GCACTTAATA
13780372 TAACTCATATTTCAAAT
1 TAACTCATATTTCAAAT
13780389 TAACTCATATTTCAAAT
1 TAACTCATATTTCAAAT
13780406 TA
1 TA
13780408 CAGCAAAAGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.42
Consensus pattern (17 bp):
TAACTCATATTTCAAAT
Found at i:13790695 original size:20 final size:20
Alignment explanation
Indices: 13790672--13790726 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
13790662 TCAAAGGTCG
13790672 AGTATCGATACTTTGAAAAA
1 AGTATCGATACTTTGAAAAA
* * **
13790692 AGTATAGATACTTAGAGCAA
1 AGTATCGATACTTTGAAAAA
13790712 AGTATCGATA-TTTGA
1 AGTATCGATACTTTGA
13790727 GGTATTTTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
19 4 0.14
20 25 0.86
ACGTcount: A:0.42, C:0.09, G:0.18, T:0.31
Consensus pattern (20 bp):
AGTATCGATACTTTGAAAAA
Found at i:13791989 original size:29 final size:29
Alignment explanation
Indices: 13791954--13792016 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
13791944 TTTTTTTTTA
*
13791954 ATTTACCGAAATAGATCCGGTATTTTATT
1 ATTTACCGAAATAGACCCGGTATTTTATT
*
13791983 ATTTACCGAAATAGACCCTGTATTTTATT
1 ATTTACCGAAATAGACCCGGTATTTTATT
13792012 ATTTA
1 ATTTA
13792017 TTGGAATTGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.43
Consensus pattern (29 bp):
ATTTACCGAAATAGACCCGGTATTTTATT
Found at i:13792335 original size:11 final size:12
Alignment explanation
Indices: 13792314--13792378 Score: 75
Period size: 11 Copynumber: 5.8 Consensus size: 12
13792304 AACTAATCCT
13792314 CTCTCAAATTTC
1 CTCTCAAATTTC
13792326 CTCT-AAATTTC
1 CTCTCAAATTTC
* *
13792337 CTCTC-ATTTTG
1 CTCTCAAATTTC
13792348 CTCTCAAA-TTC
1 CTCTCAAATTTC
*
13792359 CTTTCAAATTT-
1 CTCTCAAATTTC
13792370 CTCTCAAAT
1 CTCTCAAAT
13792379 CCATATTTAA
Statistics
Matches: 44, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
11 37 0.84
12 7 0.16
ACGTcount: A:0.25, C:0.29, G:0.02, T:0.45
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:13792402 original size:50 final size:51
Alignment explanation
Indices: 13792338--13792436 Score: 148
Period size: 50 Copynumber: 2.0 Consensus size: 51
13792328 CTAAATTTCC
13792338 TCTCATTTTGCTCTCAAATTCCT-TTCAAATTTCTCTCAAATCCATATTTAA
1 TCTCATTTTGCTCTCAAATTCCTCTT-AAATTTCTCTCAAATCCATATTTAA
* * *
13792389 TCTCA-TTTGCTCTCAACTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCATTTTGCTCTCAAATTCCTCTTAAATTTCTCTCAAATCCATATTT
13792437 TTAAATATTT
Statistics
Matches: 44, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
50 37 0.84
51 7 0.16
ACGTcount: A:0.24, C:0.27, G:0.02, T:0.46
Consensus pattern (51 bp):
TCTCATTTTGCTCTCAAATTCCTCTTAAATTTCTCTCAAATCCATATTTAA
Found at i:13792672 original size:21 final size:19
Alignment explanation
Indices: 13792623--13792676 Score: 72
Period size: 19 Copynumber: 2.7 Consensus size: 19
13792613 AATTTTCGAG
*
13792623 GATATACAATCTTAGATAT
1 GATATACAATCTTAAATAT
*
13792642 GATATGCAATCTTAAATAT
1 GATATACAATCTTAAATAT
13792661 GATATATACAATCTTA
1 G--ATATACAATCTTA
13792677 GAAGATATGA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
19 18 0.60
21 12 0.40
ACGTcount: A:0.43, C:0.11, G:0.09, T:0.37
Consensus pattern (19 bp):
GATATACAATCTTAAATAT
Found at i:13792683 original size:19 final size:19
Alignment explanation
Indices: 13792624--13792684 Score: 61
Period size: 19 Copynumber: 3.1 Consensus size: 19
13792614 ATTTTCGAGG
*
13792624 ATATACAATCTTAG-ATAT
1 ATATACAATCTTAGAAGAT
* *
13792642 GATATGCAATCTTAAATATGAT
1 -ATATACAATCTTAGA-A-GAT
13792664 ATATACAATCTTAGAAGAT
1 ATATACAATCTTAGAAGAT
13792683 AT
1 AT
13792685 GATTTTATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
19 17 0.50
20 1 0.03
21 14 0.41
22 2 0.06
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (19 bp):
ATATACAATCTTAGAAGAT
Found at i:13792901 original size:19 final size:21
Alignment explanation
Indices: 13792877--13792915 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
13792867 ACTGTTTTAT
*
13792877 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
13792896 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
13792916 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:13796460 original size:21 final size:21
Alignment explanation
Indices: 13796455--13797330 Score: 585
Period size: 21 Copynumber: 41.0 Consensus size: 21
13796445 TAAAAACGCT
*
13796455 AACCCTAACCCTAAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
13796476 AACCCTAACTCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
13796497 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* ***
13796519 TACCCTAACCCTTTTTTATCAAAAAAA
1 AACCCTAACCC----TTA--ACTTAAA
*
13796546 ATACCCTCACCCTTAACTTAAA
1 A-ACCCTAACCCTTAACTTAAA
*
13796568 AACCTTAAACCCTTAACTT-AA
1 AACCCT-AACCCTTAACTTAAA
13796589 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
13796611 AACCCTAAACCTTAAACCCT-AA
1 AACCCTAACCCTT-AA-CTTAAA
* * *
13796633 AACCCTAACCTTTAAATTTAA
1 AACCCTAACCCTTAACTTAAA
** *
13796654 AACTTTAAACC----C-T-AA
1 AACCCTAACCCTTAACTTAAA
* * *
13796669 AACCCTAAATCCATAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
13796691 AACCTTAACCATTAACATAAA
1 AACCCTAACCCTTAACTTAAA
* *
13796712 AACCTTAAACCCTTAACATAAA
1 AACCCT-AACCCTTAACTTAAA
* *
13796734 AACCTTAAACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
13796756 AGCCCTAACCCTCAACTTTAA
1 AACCCTAACCCTTAACTTAAA
* *
13796777 AACTCTAAACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
13796799 AACCCTAAGCACTTAACTTTAA
1 AACCCTAA-CCCTTAACTTAAA
*
13796821 AACCCTAAACCCTTAACCTAAA
1 AACCCT-AACCCTTAACTTAAA
* *
13796843 AAACGTAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
* * *
13796864 AACCATAAACCTTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
**
13796886 AACTATAACCCTTTAA-TTAAA
1 AACCCTAACCC-TTAACTTAAA
** *
13796907 AATTCTAA-----ACCTT-AA
1 AACCCTAACCCTTAACTTAAA
* *
13796922 AACCATAAACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
13796944 AACCTTAAGCCCTAAAACTTTAA
1 AACCCTAA-CCCT-TAACTTAAA
* * *
13796967 AACCCTAAATCCATAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
**
13796989 AACCCTAACTTTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
13797010 AACCTTACACCCTTAACTTAAA
1 AACCCTA-ACCCTTAACTTAAA
* *
13797032 AACTCTAAACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAA
*
13797054 AACCCTAACCCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAA
*
13797075 AACCCTAAACCCTTAATTTAAA
1 AACCCT-AACCCTTAACTTAAA
** *
13797097 AACTGTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* * *
13797118 AACACTAACACTTAACTTTAA
1 AACCCTAACCCTTAACTTAAA
**
13797139 AACATTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* * *
13797161 AATCGTAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
* * *
13797182 AACTCTAACCTTTAACTTTAA
1 AACCCTAACCCTTAACTTAAA
13797203 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAA
* * ** * *
13797225 AATCATTTCTCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAA
*
13797246 AACCCTAAACCCTTAACTTTAA
1 AACCCT-AACCCTTAACTTAAA
* * * *
13797268 AATCGTAACCCTTAAATAAAA
1 AACCCTAACCCTTAACTTAAA
** *
13797289 AACCCTGTCACTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
*
13797310 AACCCTAGCCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
13797331 TATAATTTAA
Statistics
Matches: 661, Mismatches: 151, Indels: 86
0.74 0.17 0.10
Matches are distributed among these distances:
15 12 0.02
16 9 0.01
20 1 0.00
21 307 0.46
22 293 0.44
23 18 0.03
24 5 0.01
25 3 0.00
27 4 0.01
28 9 0.01
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (21 bp):
AACCCTAACCCTTAACTTAAA
Found at i:13796524 original size:43 final size:43
Alignment explanation
Indices: 13796455--13797330 Score: 623
Period size: 43 Copynumber: 20.5 Consensus size: 43
13796445 TAAAAACGCT
* *
13796455 AACCCTAACCCTAAACTTAAAAACCCT-AACTCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* ***
13796497 AACCCTAAACCCTTAACTTAAATACCCT-AACCCTTTTTTATCAAAAAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCC----TTA--ACTTAAA
* *
13796546 ATACCCTCACCCTTAACTTAAAAACCTTAAACCCTTAACTT-AA
1 A-ACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
13796589 AACCCTAAACCCTTAACTTAAAAACCCTAAA-CCTTAAACCCT-AA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTT-AA-CTTAAA
* * * **
13796633 AACCCTAACCTTTAAATTTAAAACTTTAAA-CC----C-T-AA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * * *
13796669 AACCCTAAATCCATAAATTAAAAA-CCTTAACCATTAACATAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * *
13796712 AACCTTAAACCCTTAACATAAAAACCTTAAACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * *
13796756 AGCCCTAACCCTCAACTTTAAAACTCTAAACCCTTAAATTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
13796799 AACCCTAAGCACTTAACTTTAAAACCCTAAACCCTTAACCTAAA
1 AACCCTAA-CCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * *
13796843 AAACGTAACCCTTAACTTAAAAACCATAAACCTTTAAATTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
** **
13796886 AACTATAACCCTTTAA-TTAAAAATTCTAAA--C----CTT-AA
1 AACCCTAACCC-TTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * * *
13796922 AACCATAAACCCTTAAATTAAAAACCTTAAGCCCTAAAACTTTAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCT-TAACTTAAA
* * * **
13796967 AACCCTAAATCCATAAATTAAAAACCCT-AACTTTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
13797010 AACCTTACACCCTTAACTTAAAAACTCTAAACCCTTAAATTAAA
1 AACCCTA-ACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* *
13797054 AACCCTAACCCTTAACTTTAAAACCCTAAACCCTTAATTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
** * * * *
13797097 AACTGTAACCCTTAAATTAAAAACACT-AACACTTAACTTTAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
** * * *
13797139 AACATTAAACCCTTAACTTAAAAATCGT-AACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
13797182 AACTCTAACCTTTAACTTTAAAACCCTAAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * ** * * *
13797225 AATCATTTCTCTTAAATTAAAAACCCTAAACCCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * ** *
13797268 AATCGTAACCCTTAAATAAAAAACCCT-GTCACTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
13797310 AACCCTAGCCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAA
13797331 TATAATTTAA
Statistics
Matches: 656, Mismatches: 141, Indels: 74
0.75 0.16 0.08
Matches are distributed among these distances:
36 23 0.04
37 32 0.05
39 1 0.00
41 1 0.00
42 77 0.12
43 364 0.55
44 93 0.14
45 26 0.04
46 3 0.00
47 3 0.00
49 23 0.04
50 10 0.02
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (43 bp):
AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
Found at i:13796564 original size:92 final size:92
Alignment explanation
Indices: 13796456--13796623 Score: 266
Period size: 92 Copynumber: 1.8 Consensus size: 92
13796446 AAAAACGCTA
* *
13796456 ACCCTAACCCTAAACTTAAAAACCCT-AACTCTTAACTTAAAAACCCTAAACCCTTAACTTAAAT
1 ACCCTAACCCTAAACTTAAAAACCCTAAACCCTTAACTT-AAAACCCTAAACCCTTAACTTAAAA
*
13796520 ACCCTAACCCTTTTTTATCAAAAAAAAT
65 ACCCTAAACCTTTTTTATCAAAAAAAAT
* * *
13796548 ACCCTCACCCTTAACTTAAAAACCTTAAACCCTTAACTTAAAACCCTAAACCCTTAACTTAAAAA
1 ACCCTAACCCTAAACTTAAAAACCCTAAACCCTTAACTTAAAACCCTAAACCCTTAACTTAAAAA
13796613 CCCTAAACCTT
66 CCCTAAACCTT
13796624 AAACCCTAAA
Statistics
Matches: 69, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 58 0.84
93 11 0.16
ACGTcount: A:0.42, C:0.32, G:0.00, T:0.26
Consensus pattern (92 bp):
ACCCTAACCCTAAACTTAAAAACCCTAAACCCTTAACTTAAAACCCTAAACCCTTAACTTAAAAA
CCCTAAACCTTTTTTATCAAAAAAAAT
Found at i:13796663 original size:65 final size:64
Alignment explanation
Indices: 13796455--13797330 Score: 358
Period size: 64 Copynumber: 13.7 Consensus size: 64
13796445 TAAAAACGCT
* *
13796455 AACCCT-AACCCTAAACTTAAAAACCCT-AACTCTTAACTTAAAAACCCTAAACCCTTAAC--TT
1 AACCCTAAACCCTTAACTTAAAAACCCTAAAC-CTTAAATT-AAAACCCT-AACCCTTAACATTT
13796516 AA
63 AA
*** * * * *
13796518 ATACCCT-AACCCTTTTTTATCAAAAAAAATACCCTCACCCTTAACTTAAAAACCTTAAACCCTT
1 A-ACCCTAAACCC----TTA--ACTTAAAA-ACCCTAAACCTTAAATT-AAAACCCT-AACCCTT
13796582 AAC--TTAA
56 AACATTTAA
* *
13796589 AACCCTAAACCCTTAACTTAAAAACCCTAAACCTTAAACCCTAAAACCCTAACCTTTAA-ATTTA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCTTAAA--TTAAAACCCTAACCCTTAACATTTA
13796653 A
64 A
** * * * *
13796654 AACTTTAAA-CC----C-T-AAAACCCTAAATCCATAAATTAAAAACCTTAACCATTAACA-TAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAA-CCTTAAATT-AAAACCCTAACCCTTAACATTTA
13796711 A
64 A
* * * *
13796712 AACCTTAAACCCTTAACATAAAAACCTTAAACCCTTAAATTAAAAGCCCTAACCCTCAAC-TTTA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAA-CCTTAAATTAAAA-CCCTAACCCTTAACATTTA
13796776 A
64 A
* * * * * *
13796777 AACTCTAAACCCTTAAATTAAAAACCCTAAGCACTTAACTTTAAAACCCTAAACCCTTAAC-CTA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAAC-CTTAA-ATTAAAACCCT-AACCCTTAACATTT
13796841 AA
63 AA
* * * ** * *
13796843 AAACGT-AACCCTTAACTTAAAAACCATAAACCTTTAAATTAAAAACTATAACCCTTTA-ATTAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACC-TTAAATT-AAAACCCTAACCCTTAACATTTA
13796906 A
64 A
** * * *
13796907 AATTCTAAA--C----CTT-AAAACCATAAACCCTTAAATTAAAAACCTTAAGCCC-TAAAACTT
1 AACCCTAAACCCTTAACTTAAAAACCCTAAA-CCTTAAATT-AAAACCCTAA-CCCTTAACA-TT
13796964 TAA
62 TAA
* * * * * * *
13796967 AACCCTAAATCCATAAATTAAAAACCCT-AACTTTTAACTTAAAAACCTTACACCCTTAAC-TTA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAAC-CTTAAATT-AAAACCCTA-ACCCTTAACATTT
13797030 AA
63 AA
* * * *
13797032 AACTCTAAACCCTTAAATTAAAAACCCTAACCCTTAACTTTAAAACCCTAAACCCTT-A-ATTTA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCTTAA-ATTAAAACCCT-AACCCTTAACATTTA
13797095 A
64 A
* * * * * **
13797096 AA-ACTGTAACCCTTAAATTAAAAACACT-AACACTTAACTTTAAAACATTAAACCCTTAAC-TT
1 AACCCT-AAACCCTTAACTTAAAAACCCTAAAC-CTTAA-ATTAAAACCCT-AACCCTTAACATT
*
13797158 AAA
62 TAA
* * * * * *
13797161 AATCGT-AACCCTTAAATTAAAAACTCT-AACCTTTAACTTTAAAACCCTAAACCCTTAAC-TTA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACC-TTAA-ATTAAAACCCT-AACCCTTAACATTT
13797223 AA
63 AA
* * ** * * * * * **
13797225 AATCAT-TTCTCTTAAATTAAAAACCCTAAACCCTTAACTTTAAAATCGTAACCCTTAA-ATAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAA-CCTTAA-ATTAAAACCCTAACCCTTAACATTTA
13797288 A
64 A
** * ** *
13797289 AACCCT-GTCACTTAACTTAAAAACCCTAGCCCTTAACTTAAA
1 AACCCTAAACCCTTAACTTAAAAACCCTAAACCTTAAATTAAA
13797331 TATAATTTAA
Statistics
Matches: 651, Mismatches: 102, Indels: 121
0.74 0.12 0.14
Matches are distributed among these distances:
57 1 0.00
58 66 0.10
59 19 0.03
60 12 0.02
62 6 0.01
63 14 0.02
64 217 0.33
65 193 0.30
66 53 0.08
67 14 0.02
68 2 0.00
70 10 0.02
71 42 0.06
72 2 0.00
ACGTcount: A:0.46, C:0.26, G:0.01, T:0.27
Consensus pattern (64 bp):
AACCCTAAACCCTTAACTTAAAAACCCTAAACCTTAAATTAAAACCCTAACCCTTAACATTTAA
Found at i:13796690 original size:36 final size:36
Alignment explanation
Indices: 13796617--13796698 Score: 112
Period size: 36 Copynumber: 2.2 Consensus size: 36
13796607 TAAAAACCCT
*
13796617 AAACCTTAAACCCTAAAACCCTAACCTTTAAATTTA
1 AAACCTTAAACCCTAAAACCCTAACCTATAAATTTA
* *
13796653 AAACTTTAAACCCTAAAACCCTAAATCC-ATAAATTAA
1 AAACCTTAAACCCTAAAACCCT-AA-CCTATAAATTTA
13796690 AAACCTTAA
1 AAACCTTAA
13796699 CCATTAACAT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
36 21 0.52
37 17 0.43
38 2 0.05
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (36 bp):
AAACCTTAAACCCTAAAACCCTAACCTATAAATTTA
Found at i:13796960 original size:37 final size:36
Alignment explanation
Indices: 13796884--13796961 Score: 86
Period size: 37 Copynumber: 2.1 Consensus size: 36
13796874 CTTTAAATTA
* * * *
13796884 AAAACTATAACCCTTTAATTAAAAATTCTAAACCTT
1 AAAACCATAACCCTTAAATTAAAAACTCTAAACCCT
*
13796920 AAAACCATAAACCCTTAAATTAAAAAC-CTTAAGCCCT
1 AAAACCAT-AACCCTTAAATTAAAAACTC-TAAACCCT
13796957 AAAAC
1 AAAAC
13796962 TTTAAAACCC
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
36 8 0.23
37 27 0.77
ACGTcount: A:0.50, C:0.23, G:0.01, T:0.26
Consensus pattern (36 bp):
AAAACCATAACCCTTAAATTAAAAACTCTAAACCCT
Found at i:13800654 original size:126 final size:126
Alignment explanation
Indices: 13800407--13801079 Score: 820
Period size: 127 Copynumber: 5.3 Consensus size: 126
13800397 CATGCTATTA
* * * * * * *
13800407 TAGCCAAAGCGTGACCACGTGGGTGCGATTTCACAAATTCTTCTCATATAGCATCCTGCTAGAA-
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTTGAAG
* * *
13800471 -G-TGATTTTATACTATTTTCTCAGAAACGTCAAGTCGAAATTATTCTTCTAGGACCTACTG
66 CGTTG-TTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTCTTCCAGGACCTACTG
* ** *
13800531 TAGCAAAAGTGCGTCCACAAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTTGCAG
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTTGAAG
* *
13800596 CGTTGTTTTATACTATTTGCTCAGAAACGTTAAGTCGAAATTATTCTTCCAGGACCTACTG
66 CGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTCTTCCAGGACCTACTG
* * ** * *
13800657 CAGCAAAAGCGTGTCCACGTGGGCATGATTTCACAAATTCTTCTCAAATAGCATCTTTCTTGCAA
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTTG-AA
* * *
13800722 -CGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTTCAGGACCTACTG
65 GCGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTA-TTCTTCCAGGACCTACTG
* * * *
13800784 TAGCAAAAGTGCGTCCATGTGGGCGCGATTTCAAAAATTCTTCTCATAA-AGCATCCTGCTTGAA
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTACTTGAA
* * * * *
13800848 GCATTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCTAGGACCAACTG
65 GCGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTA-TTCTTCCAGGACCTACTG
*
13800911 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTACTTGAA
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTACTTGAA
* * * * *
13800975 GCGTT-TTTTAAACTATTTACTGAGAAACGTCAACTCGAAATTATTTTTCCAGGACCTAATG
65 GCGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTCTTCCAGGACCTACTG
* * * * * * *
13801036 TAACAAAAGAGCGTACACATGGGCGCGACTTCAAAAATCCTTCT
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCT
13801080 GATAAATCAT
Statistics
Matches: 476, Mismatches: 66, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
124 53 0.11
125 50 0.11
126 185 0.39
127 186 0.39
128 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (126 bp):
TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTTGAAG
CGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTCTTCCAGGACCTACTG
Found at i:13800837 original size:127 final size:125
Alignment explanation
Indices: 13800407--13801092 Score: 799
Period size: 126 Copynumber: 5.5 Consensus size: 125
13800397 CATGCTATTA
* * * * * * *
13800407 TAGCCAAAGCGTGACCACGTGGGTGCGATTTCACAAATTCTTCTCATATAGCATCCTGCTAGAA-
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTACTTGAAC
* * *
13800471 G-TGATTTTATACTATTTTCTCAGAAACGTCAAGTCGAAATTA-TTCTTCTAGGACCTACTG
66 GTTG-TTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTC-AGGACCTACTG
* **
13800531 TAGCAAAAGTGCGTCCACAAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTACTTGCA
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTACTTG-A
* * * * *
13800595 GCGTTGTTTTATACTATTTGCTCAGAAACGTTAAGTCGAAATTATTCTTCCAGGACCTACTG
64 ACGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACTG
* * ** * *
13800657 CAGCAAAAGCGTGTCCACGTGGGCATGATTTCACAAATTCTTCTCA-AATAGCATCTTTCTTGCA
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTACTTG-A
*
13800721 ACGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTTCAGGACCTACTG
64 ACGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTA-TTTTTTCAGGACCTACTG
* * * *
13800784 TAGCAAAAGTGCGTCCATGTGGGCGCGATTTCAAAAATTCTTCTCATAAAGCATCCTGCTTGAAG
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTACTTGAA-
* * * * *
13800849 CATTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCTAGGACCAACTG
65 CGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTC-AGGACCTACTG
*
13800911 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTACTTGAAG
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTACTTGAA-
* * * * *
13800976 CGTT-TTTTAAACTATTTACTGAGAAACGTCAACTCGAAATTATTTTTCCAGGACCTAATG
65 CGTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACTG
* * * * * * * * *
13801036 TAACAAAAGAGCGTACACATGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCT
1 TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT
13801093 GCTTTGATTT
Statistics
Matches: 485, Mismatches: 68, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
123 1 0.00
124 50 0.10
125 57 0.12
126 192 0.40
127 183 0.38
128 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (125 bp):
TAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTACTTGAAC
GTTGTTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGACCTACTG
Found at i:13800866 original size:253 final size:253
Alignment explanation
Indices: 13800412--13801096 Score: 891
Period size: 253 Copynumber: 2.7 Consensus size: 253
13800402 TATTATAGCC
* * * * *
13800412 AAAGCGTGACCACGTGGGTGCGATTTCACAAATTCTTCTCATATAGCATCCTGCTAGAA-G-TGA
1 AAAGCGTGTCCACGTGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTTGAACGTTG-
* * * *
13800475 TTTTATACTATTTTCTCAGAAACGTCAAGTCGAAATTATTCTTCT-AGGACCTACTGTAGCAAAA
65 TTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTTCAGGACCTACTGTAGCAAAA
* * * * *
13800539 GTGCGTCCACAAGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTACTTGCAGCGTTGTT
130 GTGCGTCCACATGGGCGCGATTTCAAAAATTCTTCTCATAA-AGCATCCTGCTTGAAGCATTGTT
* * * *
13800603 TTATACTATTTGCTCAGAAACGTTAAGTCGAAATTA-TTCTTCCAGGACCTACTGCAGCA
194 TTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTGCAGCA
** * *
13800662 AAAGCGTGTCCACGTGGGCATGATTTCACAAATTCTTCTCAAATAGCATCTTTCTTGCAACGTTG
1 AAAGCGTGTCCACGTGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTTG-AACGTTG
* *
13800727 TTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTTTCAGGACCTACTGTAGCAAAA
65 TTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTTCAGGACCTACTGTAGCAAAA
** *
13800792 GTGCGTCCATGTGGGCGCGATTTCAAAAATTCTTCTCATAAAGCATCCTGCTTGAAGCATTTTTT
130 GTGCGTCCACATGGGCGCGATTTCAAAAATTCTTCTCATAAAGCATCCTGCTTGAAGCATTGTTT
* *
13800857 TAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCTAGGACCAACTGTAGCA
195 TAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTGCAGCA
* *
13800916 AAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTACTTGAAGCGTT
1 AAAGCGTGTCCACGTGGGCGCGATTTCACAAATTCTTCTCA-AATAGCATCCTACTTGAA-CGTT
* * * * *
13800980 -TTTTAAACTATTTACTGAGAAACGTCAACTCGAAATTA-TTTTTCCAGGACCTAATGTAACAAA
64 GTTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTTCAGGACCTACTGTAGCAAA
* * * * * *
13801043 AGAGCGTACACATGGGCGCGACTTCAAAAATCCTTCTGATAAATCATCCTGCTT
129 AGTGCGTCCACATGGGCGCGATTTCAAAAATTCTTCTCATAAAGCATCCTGCTT
13801097 TGATTTTATC
Statistics
Matches: 379, Mismatches: 48, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
250 49 0.13
251 2 0.01
252 109 0.29
253 143 0.38
254 74 0.20
255 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (253 bp):
AAAGCGTGTCCACGTGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTACTTGAACGTTGT
TTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTTCAGGACCTACTGTAGCAAAAG
TGCGTCCACATGGGCGCGATTTCAAAAATTCTTCTCATAAAGCATCCTGCTTGAAGCATTGTTTT
AAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACCAACTGCAGCA
Found at i:13804934 original size:29 final size:33
Alignment explanation
Indices: 13804902--13804961 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 33
13804892 ATAACATATA
13804902 TAAAA-ACTT-AAAAT-AAATAATA-ATAAATC
1 TAAAATACTTCAAAATAAAATAATATATAAATC
*
13804931 TAAAATAGTTCAAAATAAAATAATATATAAA
1 TAAAATACTTCAAAATAAAATAATATATAAA
13804962 AGAAAATCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
29 5 0.19
30 3 0.12
31 5 0.19
32 8 0.31
33 5 0.19
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.28
Consensus pattern (33 bp):
TAAAATACTTCAAAATAAAATAATATATAAATC
Found at i:13818136 original size:55 final size:56
Alignment explanation
Indices: 13817950--13818239 Score: 302
Period size: 55 Copynumber: 5.2 Consensus size: 56
13817940 TAGATATACT
* *
13817950 ACATAACAATCGATTTAAACATATAAATAATCTATT-AAAAAAAGCAGTA-TTCCA
1 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAGCAGTATTTCTA
* * ** *
13818004 ACATAAAAATAGATTTAAACATATAAGCAATCTATTCAAAAGAAGAAGATGCAGTATTCTA
1 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAGCAG-T--A-T-TTCTA
* * * *
13818065 CCATAACAATCGATTTAAACATATAAACAATCGATTTAAAAGAAGCAGTATTTC-A
1 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAGCAGTATTTCTA
* * * *
13818120 ACATGACAATCAATTTAAACATATAAATAATCGATTCAAAAGAAACAGTA-TTCTA
1 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAGCAGTATTTCTA
* * * * * *
13818175 ATATGACAATCGATTTAAACATAAAAATAATATATTCAAAAGAAGCAATA-TTCCA
1 ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAGCAGTATTTCTA
*
13818230 GCATAACAAT
1 ACATAACAAT
13818240 TAATCCAATC
Statistics
Matches: 197, Mismatches: 31, Indels: 15
0.81 0.13 0.06
Matches are distributed among these distances:
54 35 0.18
55 109 0.55
56 4 0.02
57 1 0.01
58 2 0.01
60 1 0.01
61 45 0.23
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (56 bp):
ACATAACAATCGATTTAAACATATAAATAATCTATTCAAAAGAAGCAGTATTTCTA
Found at i:13818239 original size:110 final size:113
Alignment explanation
Indices: 13817950--13818239 Score: 356
Period size: 110 Copynumber: 2.6 Consensus size: 113
13817940 TAGATATACT
* *
13817950 ACATAACAATCGATTTAAACATATAAATAATCTATTAAAAAAAGCAGTATTCCAACATAAAAATA
1 ACATAACAATCGATTTAAACATATAAATAATCTATTAAAAGAAGCAGTATTCCAACATAACAATA
* *
13818015 GATTTAAACATATAAGCAATCTATTCAAAAGAAGAAGATGCAGTATTCTA
66 GATTTAAACATATAAACAATCGATTC-AAAGAAGAAGA-GCAGTATTCTA
* * * * *
13818065 CCATAACAATCGATTTAAACATATAAACAATCGATTTAAAAGAAGCAGTATTTCAACATGACAAT
1 ACATAACAATCGATTTAAACATATAAATAATCTA-TTAAAAGAAGCAGTATTCCAACATAACAAT
*
13818130 CA-ATTTAAACATATAAATAATCGATTC-AA-AAGAA-A-CAGTATTCTA
65 -AGATTTAAACATATAAACAATCGATTCAAAGAAGAAGAGCAGTATTCTA
* * * * * *
13818175 ATATGACAATCGATTTAAACATAAAAATAATATATTCAAAAGAAGCAATATTCCAGCATAACAAT
1 ACATAACAATCGATTTAAACATATAAATAATCTATT-AAAAGAAGCAGTATTCCAACATAACAAT
13818240 TAATCCAATC
Statistics
Matches: 151, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
109 2 0.01
110 61 0.40
112 1 0.01
113 5 0.03
114 2 0.01
115 31 0.21
116 48 0.32
117 1 0.01
ACGTcount: A:0.51, C:0.14, G:0.08, T:0.27
Consensus pattern (113 bp):
ACATAACAATCGATTTAAACATATAAATAATCTATTAAAAGAAGCAGTATTCCAACATAACAATA
GATTTAAACATATAAACAATCGATTCAAAGAAGAAGAGCAGTATTCTA
Found at i:13819771 original size:30 final size:31
Alignment explanation
Indices: 13819732--13819791 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
13819722 AGAGGTGGGA
*
13819732 TGGGAAGGGAATAAAAGTTTT-AGGGAAAAAG
1 TGGGAAGGGAATAAAAATTTTGA-GGAAAAAG
*
13819763 TGGG-AGGGAGTAAAAATTTTGAGGAAAAA
1 TGGGAAGGGAATAAAAATTTTGAGGAAAAA
13819792 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.45, C:0.00, G:0.35, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTGAGGAAAAAG
Found at i:13819989 original size:9 final size:9
Alignment explanation
Indices: 13819975--13820011 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
13819965 TATAGTTTGA
13819975 TATTCGAAT
1 TATTCGAAT
13819984 TATTCGAAT
1 TATTCGAAT
*
13819993 TATTCGAGT
1 TATTCGAAT
*
13820002 TATTCCAAT
1 TATTCGAAT
13820011 T
1 T
13820012 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.14, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:13821188 original size:6 final size:6
Alignment explanation
Indices: 13821177--13821212 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
13821167 TCTCAGTTGC
13821177 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
1 ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT ATTTTT
13821213 CCCTTTTTTC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (6 bp):
ATTTTT
Found at i:13821881 original size:21 final size:21
Alignment explanation
Indices: 13821836--13821893 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
13821826 ATGTTATACC
*
13821836 ATTATT-TTATTTTT-TTTAT
1 ATTATTGTTATTTTTATTAAT
13821855 -TTATTGTTATTTTTATTAAT
1 ATTATTGTTATTTTTATTAAT
* *
13821875 ATTATTGTTGTTGTTATTA
1 ATTATTGTTATTTTTATTA
13821894 TAAGGGAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 5 0.15
19 8 0.24
20 4 0.12
21 16 0.48
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (21 bp):
ATTATTGTTATTTTTATTAAT
Found at i:13821947 original size:28 final size:28
Alignment explanation
Indices: 13821916--13821981 Score: 69
Period size: 29 Copynumber: 2.3 Consensus size: 28
13821906 ACCAATAAAA
13821916 GCCGTTTTTTCAAAATTTACCGAAATGG
1 GCCGTTTTTTCAAAATTTACCGAAATGG
* ** *
13821944 GCCGATTTTTTGATTATTTACCGGAATGG
1 GCCG-TTTTTTCAAAATTTACCGAAATGG
* *
13821973 TCCATTTTT
1 GCCGTTTTT
13821982 CGGGAAATCG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
28 9 0.29
29 22 0.71
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (28 bp):
GCCGTTTTTTCAAAATTTACCGAAATGG
Found at i:13822154 original size:12 final size:12
Alignment explanation
Indices: 13822137--13822162 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
13822127 TAATCCTCTC
13822137 AATTTCCTTCCA
1 AATTTCCTTCCA
13822149 AATTTCCTTCCA
1 AATTTCCTTCCA
13822161 AA
1 AA
13822163 ATTCTCTCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.38
Consensus pattern (12 bp):
AATTTCCTTCCA
Found at i:13822209 original size:51 final size:51
Alignment explanation
Indices: 13822135--13822256 Score: 183
Period size: 51 Copynumber: 2.4 Consensus size: 51
13822125 TCTAATCCTC
*
13822135 TCAATTTCCT-TCCAAATTTCCTTCCAAAATTCTCTCTAACCCATATTTAATT
1 TCAATTTCCTCT-C-AATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
* *
13822187 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAATCCTTATTTAATT
1 TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
*
13822238 TCAATTTCCCCTCAATTTC
1 TCAATTTCCTCTCAATTTC
13822257 ATTTTTTAAA
Statistics
Matches: 65, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
51 53 0.82
52 11 0.17
53 1 0.02
ACGTcount: A:0.27, C:0.30, G:0.00, T:0.43
Consensus pattern (51 bp):
TCAATTTCCTCTCAATTTCCTTCCAAAATTCTCTCAAACCCATATTTAATT
Found at i:13822314 original size:31 final size:32
Alignment explanation
Indices: 13822258--13822323 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
13822248 CTCAATTTCA
* *
13822258 TTTTTTAAAATAATTTTAAATTTTTTTTATAT
1 TTTTTTAAAAAAAATTTAAATTTTTTTTATAT
13822290 TTTTTTAAAAAAAATTTAAA-TTTTTTTATAT
1 TTTTTTAAAAAAAATTTAAATTTTTTTTATAT
13822321 TTT
1 TTT
13822324 CATCAATGGC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 14 0.44
32 18 0.56
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (32 bp):
TTTTTTAAAAAAAATTTAAATTTTTTTTATAT
Found at i:13823417 original size:7 final size:7
Alignment explanation
Indices: 13823405--13823429 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
13823395 AGTCGATTGA
13823405 TATTTAG
1 TATTTAG
13823412 TATTTAG
1 TATTTAG
13823419 TATTTAG
1 TATTTAG
13823426 TATT
1 TATT
13823430 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:13824106 original size:18 final size:18
Alignment explanation
Indices: 13824080--13824114 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
13824070 AGGTGTGTTT
* *
13824080 CCTAGCCCTTATATGTAC
1 CCTAACCCTTACATGTAC
13824098 CCTAACCCTTACATGTA
1 CCTAACCCTTACATGTA
13824115 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (18 bp):
CCTAACCCTTACATGTAC
Found at i:13824547 original size:25 final size:25
Alignment explanation
Indices: 13824518--13824628 Score: 83
Period size: 25 Copynumber: 4.6 Consensus size: 25
13824508 TTTAAATTTA
13824518 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
** *
13824543 TTATTTGATGTAATACGCATAGAAAT
1 TTATTTGATGTAATA-AAATAGAAGT
** *
13824569 TT-TTTCGA-GT--T-ATTTTG-A-T
1 TTATTT-GATGTAATAAAATAGAAGT
13824588 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAAGT
*
13824614 TTATTTGATATAATA
1 TTATTTGATGTAATA
13824629 GGCATAGAAA
Statistics
Matches: 65, Mismatches: 11, Indels: 20
0.68 0.11 0.21
Matches are distributed among these distances:
19 1 0.02
20 5 0.08
21 7 0.11
23 2 0.03
24 3 0.05
25 35 0.54
26 12 0.18
ACGTcount: A:0.38, C:0.03, G:0.14, T:0.45
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:13824604 original size:71 final size:71
Alignment explanation
Indices: 13824516--13824700 Score: 325
Period size: 71 Copynumber: 2.6 Consensus size: 71
13824506 TATTTAAATT
13824516 TATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAGAAATTTTTTCGAGTTA
1 TATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAGAAATTTTTTCGAGTTA
13824581 TTTTGA
66 TTTTGA
* *
13824587 TATTATTTGATGTAATAAAATAGAAGTTTATTTGATATAATAGGCATAGAAATTTTTTCGAGTTA
1 TATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAGAAATTTTTTCGAGTTA
13824652 TTTTGA
66 TTTTGA
* *
13824658 TATTATTTGATATAATAAAATAGAAGTTCTATTTGAAGTAATA
1 TATTATTTGATGTAATAAAATAGAAGTT-TATTTGATGTAATA
13824701 AAAACCGGTG
Statistics
Matches: 108, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 96 0.89
72 12 0.11
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (71 bp):
TATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATACGCATAGAAATTTTTTCGAGTTA
TTTTGA
Found at i:13824728 original size:20 final size:20
Alignment explanation
Indices: 13824703--13824744 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
13824693 AAGTAATAAA
13824703 AACCGGTGTGGTAGATCTGG
1 AACCGGTGTGGTAGATCTGG
13824723 AACCGGTGTGGTAGATCTGG
1 AACCGGTGTGGTAGATCTGG
13824743 AA
1 AA
13824745 ACTCTAACGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.24, C:0.14, G:0.38, T:0.24
Consensus pattern (20 bp):
AACCGGTGTGGTAGATCTGG
Found at i:13828917 original size:5 final size:5
Alignment explanation
Indices: 13828897--13828930 Score: 50
Period size: 5 Copynumber: 6.4 Consensus size: 5
13828887 GCAAAATTGT
13828897 AATAA AATTGAA AATAA AATAA AATAA AATAA AA
1 AATAA AA-T-AA AATAA AATAA AATAA AATAA AA
13828931 AATGAAATTA
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 21 0.78
6 2 0.07
7 4 0.15
ACGTcount: A:0.76, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
AATAA
Done.