Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 52 of 173
Found at i:14445950 original size:43 final size:43
Alignment explanation
Indices: 14445900--14446215 Score: 425
Period size: 43 Copynumber: 7.3 Consensus size: 43
14445890 AGGTTATGTT
* * *
14445900 TTTAGCGGCGTTTGTGGGGAAAGCGCCGCTAAAGGTTTTTGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* *
14445943 TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAATGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
14445986 TTTAGCGGCGTTTGTTGGAAAAGCCCCGCTAATGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
14446029 TTTAGCGGCGTTTGTGGGAAAAACGCCGTTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * * * * *
14446072 TTTAGCGGCGTTTGTGGCAAAGGTGTCGCTAAAGATCATGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
14446115 TTTAGCGGCGTTTGTGGGAAAAACACCGCTAATGGTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
* * *
14446158 TTTAGCGGCGTTTGTGGGAAAAGCGCTGCTAATGTTCTTGGTC
1 TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
14446201 TTTAGCGGCGTTTGT
1 TTTAGCGGCGTTTGT
14446216 TTCTAAAAAC
Statistics
Matches: 239, Mismatches: 34, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 239 1.00
ACGTcount: A:0.18, C:0.17, G:0.32, T:0.32
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGTC
Found at i:14446308 original size:22 final size:22
Alignment explanation
Indices: 14446280--14446322 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
14446270 TAGCGGTGCT
*
14446280 AAAAAGCGCCGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
*
14446302 AAAAAGCGCTGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
14446323 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.12
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:14450385 original size:26 final size:26
Alignment explanation
Indices: 14450347--14450396 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14450337 AAACATATTT
14450347 TTCATAAATTTTACTAGGGGTAAAATC
1 TTCATAAATTTTACTA-GGGTAAAATC
14450374 TTCAT-AATTTTACTAGGGTAAAA
1 TTCATAAATTTTACTAGGGTAAAA
14450397 CCGGGATAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 8 0.35
26 10 0.43
27 5 0.22
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.38
Consensus pattern (26 bp):
TTCATAAATTTTACTAGGGTAAAATC
Found at i:14450405 original size:25 final size:26
Alignment explanation
Indices: 14450353--14450405 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 26
14450343 ATTTTTCATA
* **
14450353 AATTTTACTAGGGGTAAAATCTTCAT
1 AATTTTACTAGGGGTAAAACCGGCAT
*
14450379 AATTTTACTA-GGGTAAAACCGGGAT
1 AATTTTACTAGGGGTAAAACCGGCAT
14450404 AA
1 AA
14450406 GAAAATTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (26 bp):
AATTTTACTAGGGGTAAAACCGGCAT
Found at i:14451800 original size:16 final size:16
Alignment explanation
Indices: 14451779--14451809 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
14451769 TTGGGTTGAA
*
14451779 AAAATTATTTAATTAG
1 AAAATTAATTAATTAG
14451795 AAAATTAATTAATTA
1 AAAATTAATTAATTA
14451810 AATTTATTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (16 bp):
AAAATTAATTAATTAG
Found at i:14451998 original size:24 final size:24
Alignment explanation
Indices: 14451970--14452019 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
14451960 GGGTGGCAAC
14451970 CCTAGTGTATTTAACTAGGGTTAG
1 CCTAGTGTATTTAACTAGGGTTAG
14451994 CCTAGTGTATTTAACTAGGGTTAG
1 CCTAGTGTATTTAACTAGGGTTAG
14452018 CC
1 CC
14452020 GTCCCTCTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (24 bp):
CCTAGTGTATTTAACTAGGGTTAG
Found at i:14459348 original size:17 final size:16
Alignment explanation
Indices: 14459328--14459385 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
14459318 ATTTTAATAG
14459328 ATTTAATATTTGATTTA
1 ATTTAATATTT-ATTTA
14459345 ATTTAATATTTATATTA
1 ATTTAATATTTAT-TTA
*
14459362 A--TAGTATTT-TATTA
1 ATTTAATATTTAT-TTA
14459376 ATTTAATATT
1 ATTTAATATT
14459386 AAAGTGATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
14 6 0.17
15 7 0.19
16 8 0.22
17 15 0.42
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (16 bp):
ATTTAATATTTATTTA
Found at i:14459385 original size:25 final size:25
Alignment explanation
Indices: 14459352--14459407 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
14459342 TTAATTTAAT
*
14459352 ATTT-ATATTAATAGT-ATTTTATTA
1 ATTTAATATTAA-AGTGATTATATTA
14459376 ATTTAATATTAAAGTGATTATATTA
1 ATTTAATATTAAAGTGATTATATTA
14459401 ATATTAA
1 AT-TTAA
14459408 ATTGAATTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 7 0.25
25 17 0.61
26 4 0.14
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (25 bp):
ATTTAATATTAAAGTGATTATATTA
Found at i:14459470 original size:62 final size:59
Alignment explanation
Indices: 14459398--14459513 Score: 169
Period size: 62 Copynumber: 1.9 Consensus size: 59
14459388 AGTGATTATA
* * *
14459398 TTAATATTAAATTGAATTTAATATTTATCTTGTAGATAAATTTTCTATTAATTTAATAAGAT
1 TTAATATTAAATTGAATCTAATATTTATC-T-T-GATAAATATTATATTAATTTAATAAGAT
*
14459460 TTAATATTAAATTTAATCTAATATTTATCTTGATAAATATTATATTAATTTAAT
1 TTAATATTAAATTGAATCTAATATTTATCTTGATAAATATTATATTAATTTAAT
14459514 TTTAGAGTGA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 21 0.42
60 1 0.02
61 1 0.02
62 27 0.54
ACGTcount: A:0.41, C:0.03, G:0.04, T:0.51
Consensus pattern (59 bp):
TTAATATTAAATTGAATCTAATATTTATCTTGATAAATATTATATTAATTTAATAAGAT
Found at i:14470739 original size:18 final size:19
Alignment explanation
Indices: 14470716--14470754 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
14470706 GGGGTGTTCC
14470716 AAAGGTT-CACTTA-AAGAA
1 AAAGGTTGCA-TTACAAGAA
14470734 AAAGGTTGCATTACAAGAA
1 AAAGGTTGCATTACAAGAA
14470753 AA
1 AA
14470755 CTAAGACAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.51, C:0.10, G:0.18, T:0.21
Consensus pattern (19 bp):
AAAGGTTGCATTACAAGAA
Found at i:14472549 original size:15 final size:15
Alignment explanation
Indices: 14472529--14472560 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
14472519 CTGCATAGTT
14472529 TTTAGATTTGTGTGA
1 TTTAGATTTGTGTGA
14472544 TTTAGATTTGTGTGA
1 TTTAGATTTGTGTGA
14472559 TT
1 TT
14472561 AAATTGTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (15 bp):
TTTAGATTTGTGTGA
Found at i:14474830 original size:20 final size:21
Alignment explanation
Indices: 14474805--14474845 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
14474795 TAGAAAATTG
*
14474805 AGCTT-ATTGGGCTCTCAAGC
1 AGCTTAATTGGGATCTCAAGC
*
14474825 AGCTTAATTTGGATCTCAAGC
1 AGCTTAATTGGGATCTCAAGC
14474846 TTGCTAGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (21 bp):
AGCTTAATTGGGATCTCAAGC
Found at i:14476799 original size:43 final size:42
Alignment explanation
Indices: 14476749--14476948 Score: 171
Period size: 43 Copynumber: 4.8 Consensus size: 42
14476739 TTTCAGCAAT
* * * *
14476749 AAACGCCGCTAAAGACCATGAGCTTTAGCGACGCTTTTACTAC
1 AAACGCCGCTATAG-CCAAGATCTTTAGCGACGCTTTTACCAC
* *
14476792 AAACGCCGC--TAG----GATCTTTAGCGACGCCTTTCCCAC
1 AAACGCCGCTATAGCCAAGATCTTTAGCGACGCTTTTACCAC
* * * *
14476828 AAACGCCGCTATAGATCAAGATCTTTAGCGGCACTTTTCCCAC
1 AAACGCCGCTATAG-CCAAGATCTTTAGCGACGCTTTTACCAC
* * *
14476871 AAACGCCGCTATAGCTGAAGACCTTTAGCGGCGCTTTTACCAC
1 AAACGCCGCTATAGC-CAAGATCTTTAGCGACGCTTTTACCAC
* * *
14476914 AAACGCCACTATAACACAA-ACCTTTAGCGACGCTT
1 AAACGCCGCTATAGC-CAAGATCTTTAGCGACGCTT
14476949 CTTGCAAAAA
Statistics
Matches: 131, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
36 29 0.22
38 3 0.02
41 2 0.02
42 15 0.11
43 82 0.63
ACGTcount: A:0.28, C:0.31, G:0.17, T:0.23
Consensus pattern (42 bp):
AAACGCCGCTATAGCCAAGATCTTTAGCGACGCTTTTACCAC
Found at i:14482186 original size:29 final size:30
Alignment explanation
Indices: 14482152--14482216 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
14482142 AACTCGACCA
*
14482152 TTAACCCTTAAATCC-T-AAACCCTGAACCC
1 TTAACCCTTAAA-CCTTAAAACCCTAAACCC
14482181 TTAA-CCTTAAACCTTAAAACCCTAAACCC
1 TTAACCCTTAAACCTTAAAACCCTAAACCC
*
14482210 ATAACCC
1 TTAACCC
14482217 ATAGCCCCTA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
27 2 0.06
28 8 0.26
29 19 0.61
30 2 0.06
ACGTcount: A:0.38, C:0.37, G:0.02, T:0.23
Consensus pattern (30 bp):
TTAACCCTTAAACCTTAAAACCCTAAACCC
Found at i:14482209 original size:7 final size:7
Alignment explanation
Indices: 14482154--14482249 Score: 52
Period size: 7 Copynumber: 13.3 Consensus size: 7
14482144 CTCGACCATT
14482154 AACCCTTA
1 AACCC-TA
*
14482162 AATCCTA
1 AACCCTA
*
14482169 AACCCTG
1 AACCCTA
*
14482176 AACCCTT
1 AACCCTA
*
14482183 AACCTTA
1 AACCCTA
*
14482190 AACCTTAA
1 AACCCT-A
14482198 AACCCTA
1 AACCCTA
14482205 AACCC-A
1 AACCCTA
14482211 TAACCCATA
1 -AACCC-TA
**
14482220 GCCCCT-
1 AACCCTA
14482226 AACCTCTA
1 AACC-CTA
*
14482234 ACCCCTA
1 AACCCTA
*
14482241 ACCCCTA
1 AACCCTA
14482248 AA
1 AA
14482250 ACTTATTTAA
Statistics
Matches: 69, Mismatches: 13, Indels: 13
0.73 0.14 0.14
Matches are distributed among these distances:
6 3 0.04
7 49 0.71
8 16 0.23
9 1 0.01
ACGTcount: A:0.38, C:0.41, G:0.02, T:0.20
Consensus pattern (7 bp):
AACCCTA
Found at i:14482976 original size:41 final size:41
Alignment explanation
Indices: 14482888--14483206 Score: 409
Period size: 41 Copynumber: 7.9 Consensus size: 41
14482878 TTTTATTATT
* *
14482888 ATTAGCGGCGCTT-TTCAAAAACGCCGTTAAATG--C--GC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
14482924 ATTAGCGGCGCTTCGTCAAAAACGCCGCTAAAGGCCCGAGA
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* * **
14482965 ATTAGCGGCGCTTCTTCAGAACCGCCATTAAAAGGCCCGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCT-AAAGGCCCGAGC
* *
14483007 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCTTC-AGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGC-CCGAGC
*
14483048 ATTAGCGGCGCTTCTTCACAAACGCCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
*
14483089 ATTAGCGGCGCTTCGTT-AAAAACGCCGCTAAAGGTCCGAGC
1 ATTAGCGGCGCTTC-TTCAAAAACGCCGCTAAAGGCCCGAGC
* * *
14483130 ATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCCAAC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
14483171 ATTAGCGGCGCTTTTTCTAAAACGCCGCTAAAGGCC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCC
14483207 TCAAAAACTT
Statistics
Matches: 245, Mismatches: 28, Indels: 15
0.85 0.10 0.05
Matches are distributed among these distances:
36 13 0.05
37 17 0.07
39 1 0.00
40 2 0.01
41 174 0.71
42 38 0.16
ACGTcount: A:0.27, C:0.30, G:0.24, T:0.20
Consensus pattern (41 bp):
ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:14483389 original size:40 final size:40
Alignment explanation
Indices: 14483267--14483393 Score: 120
Period size: 40 Copynumber: 3.2 Consensus size: 40
14483257 TTCAAAAAAT
*
14483267 GCCGCTAATGCTT-ATTTTTAGCGGCG--TTTTCCAGAAAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTTCC--AAAGC
* * ** * *
14483306 GCCACTAATGCTCGACCTTTAGTGGCGTTTATAT-AAAAGC
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTT-TTTCCAAAGC
14483346 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTGTCCAAA-C
1 GCCGCTAATGCTTGATTTTTAGTGGCGTTTTT-TCCAAAGC
14483386 GCCGCTAA
1 GCCGCTAA
14483394 AAGCATGTTT
Statistics
Matches: 69, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
39 12 0.17
40 51 0.74
41 3 0.04
42 1 0.01
43 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.22, T:0.33
Consensus pattern (40 bp):
GCCGCTAATGCTTGATTTTTAGTGGCGTTTTTTCCAAAGC
Found at i:14484131 original size:11 final size:13
Alignment explanation
Indices: 14484115--14484162 Score: 53
Period size: 13 Copynumber: 3.6 Consensus size: 13
14484105 TATTATAATA
14484115 TATATATAA-ATGT
1 TATA-ATAATATGT
*
14484128 TATAATAAGTATAT
1 TATAATAA-TATGT
*
14484142 TATATTAATATGT
1 TATAATAATATGT
14484155 TATAATAA
1 TATAATAA
14484163 ACATTAAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
12 4 0.14
13 15 0.52
14 10 0.34
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.46
Consensus pattern (13 bp):
TATAATAATATGT
Found at i:14484154 original size:27 final size:23
Alignment explanation
Indices: 14484104--14484162 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 23
14484094 TCTTATATTA
*
14484104 TTATTATAATATATATATAAATG
1 TTATAATAATATATATATAAATG
14484127 TTATAATAAGTATATTATATTAATATG
1 TTATAATAA-TATA-TATA-TAA-ATG
14484154 TTATAATAA
1 TTATAATAA
14484163 ACATTAAAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
23 8 0.26
24 4 0.13
25 4 0.13
26 3 0.10
27 12 0.39
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (23 bp):
TTATAATAATATATATATAAATG
Found at i:14484168 original size:25 final size:26
Alignment explanation
Indices: 14484115--14484168 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 26
14484105 TATTATAATA
*
14484115 TATATATAAATGTTATAATAAGTATAT
1 TATATATAAATGTTATAATAAG-ACAT
14484142 TATAT-TAATATGTTATAATAA-ACAT
1 TATATATAA-ATGTTATAATAAGACAT
14484167 TA
1 TA
14484169 AAAGAAAGCC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
25 5 0.20
26 3 0.12
27 17 0.68
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.44
Consensus pattern (26 bp):
TATATATAAATGTTATAATAAGACAT
Found at i:14485136 original size:43 final size:43
Alignment explanation
Indices: 14485054--14485159 Score: 106
Period size: 43 Copynumber: 2.5 Consensus size: 43
14485044 GACTCCGATA
* * * *
14485054 TGTGTTTTCGTGTAAGACCATGTTTGGGACATCGGCATCGACC
1 TGTGTTTACGTGTAAGACCATATCTGGGACATCGACATCGACC
* ***
14485097 TGTGTTTACGTGTAAGACCCTATCTGGGACAAT-GACATCGGTA
1 TGTGTTTACGTGTAAGACCATATCTGGGAC-ATCGACATCGACC
* *
14485140 TGTGATTACATGTAAGACCA
1 TGTGTTTACGTGTAAGACCA
14485160 CGTCCGGGAC
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 49 0.96
44 2 0.04
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (43 bp):
TGTGTTTACGTGTAAGACCATATCTGGGACATCGACATCGACC
Found at i:14487545 original size:27 final size:26
Alignment explanation
Indices: 14487480--14487552 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
14487470 AAGGGGTCTT
* *
14487480 TACTTTTCTTTTCTTTTCTTTTAGGA
1 TACTTTTATTTTCATTTCTTTTAGGA
* *
14487506 TACTTTAAGTTTTCATTTCTTTATAGGT
1 TACTTTTA-TTTTCATTTCTTT-TAGGA
* *
14487534 TATTTTTATTTTTATTTCT
1 TACTTTTATTTTCATTTCT
14487553 CACATAAAAA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
26 6 0.16
27 22 0.58
28 10 0.26
ACGTcount: A:0.16, C:0.11, G:0.07, T:0.66
Consensus pattern (26 bp):
TACTTTTATTTTCATTTCTTTTAGGA
Found at i:14490434 original size:22 final size:22
Alignment explanation
Indices: 14490394--14490440 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
14490384 TGTTACCATG
* *
14490394 TTTTTTTGTTGTCTCACTACCA
1 TTTTGTTGTTGTCTAACTACCA
* *
14490416 TTTTGTTGTTGTTTAACTATCA
1 TTTTGTTGTTGTCTAACTACCA
14490438 TTT
1 TTT
14490441 CACTATTATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.15, C:0.15, G:0.11, T:0.60
Consensus pattern (22 bp):
TTTTGTTGTTGTCTAACTACCA
Found at i:14490470 original size:33 final size:33
Alignment explanation
Indices: 14490415--14490482 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
14490405 TCTCACTACC
** *
14490415 ATTTTGTTGTTGTTTAACTATCATTTCACTATT
1 ATTTTGTTGTCATTTAACTATCACTTCACTATT
* *
14490448 ATTTTGTTGTCATTTCATTATCACTTCACTATT
1 ATTTTGTTGTCATTTAACTATCACTTCACTATT
14490481 AT
1 AT
14490483 ATTGCTATTA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.22, C:0.15, G:0.07, T:0.56
Consensus pattern (33 bp):
ATTTTGTTGTCATTTAACTATCACTTCACTATT
Found at i:14490562 original size:52 final size:53
Alignment explanation
Indices: 14490501--14490605 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 53
14490491 TATTATTTTT
*
14490501 GTTTATTGTTTGGATATTGTATAACCCTTGTTGTATTGTTAATTTTTCTACTA
1 GTTTATTGTTTGGATAATGTATAACCCTTGTTGTATTGTTAATTTTTCTACTA
*
14490554 GTTT-TTGTTTGGATAATGTATAACTCTTGTTGTATTGTTAATTTTTCTACTA
1 GTTTATTGTTTGGATAATGTATAACCCTTGTTGTATTGTTAATTTTTCTACTA
14490606 CTTTGGAGGC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
52 46 0.92
53 4 0.08
ACGTcount: A:0.21, C:0.09, G:0.15, T:0.55
Consensus pattern (53 bp):
GTTTATTGTTTGGATAATGTATAACCCTTGTTGTATTGTTAATTTTTCTACTA
Found at i:14495760 original size:21 final size:21
Alignment explanation
Indices: 14495735--14495774 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14495725 ATACTTTTAT
14495735 AATAATATTT-ATTATTTTAAA
1 AATAAT-TTTAATTATTTTAAA
*
14495756 AATAATTTTAATTTTTTTA
1 AATAATTTTAATTATTTTA
14495775 TTGAGTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.18
21 14 0.82
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
AATAATTTTAATTATTTTAAA
Found at i:14498303 original size:30 final size:30
Alignment explanation
Indices: 14498269--14498331 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
14498259 TAATAAATAA
*
14498269 AATTATCAAACCC-AGCCAATTACCCAACTC
1 AATTA-CAAACCCAACCCAATTACCCAACTC
*
14498299 AATTACCAACCCAACCCAATTACCCAACTC
1 AATTACAAACCCAACCCAATTACCCAACTC
14498329 AAT
1 AAT
14498332 AAAACTAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 6 0.20
30 24 0.80
ACGTcount: A:0.41, C:0.38, G:0.02, T:0.19
Consensus pattern (30 bp):
AATTACAAACCCAACCCAATTACCCAACTC
Found at i:14498312 original size:17 final size:17
Alignment explanation
Indices: 14498290--14498322 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14498280 CCAGCCAATT
*
14498290 ACCCAACTCAATTACCA
1 ACCCAACCCAATTACCA
14498307 ACCCAACCCAATTACC
1 ACCCAACCCAATTACC
14498323 CAACTCAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.45, G:0.00, T:0.15
Consensus pattern (17 bp):
ACCCAACCCAATTACCA
Found at i:14498420 original size:51 final size:52
Alignment explanation
Indices: 14498307--14498420 Score: 196
Period size: 51 Copynumber: 2.2 Consensus size: 52
14498297 TCAATTACCA
14498307 ACCCAACCCAATTACCCAACTCAATAAAACTAAAACTAAAGTCTACCCAATT
1 ACCCAACCCAATTACCCAACTCAATAAAACTAAAACTAAAGTCTACCCAATT
* *
14498359 ACCCAA-CCAATTACCCTACTGAATAAAACTAAAACTAAAGTCTACCCAATT
1 ACCCAACCCAATTACCCAACTCAATAAAACTAAAACTAAAGTCTACCCAATT
14498410 A-CCAACCCAAT
1 ACCCAACCCAAT
14498421 AAAAATAAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
50 4 0.07
51 49 0.83
52 6 0.10
ACGTcount: A:0.46, C:0.32, G:0.03, T:0.19
Consensus pattern (52 bp):
ACCCAACCCAATTACCCAACTCAATAAAACTAAAACTAAAGTCTACCCAATT
Found at i:14498601 original size:37 final size:37
Alignment explanation
Indices: 14498574--14498648 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
14498564 TGTTAATTTC
* *
14498574 AAGAATTATATAATGTTTTTAATTATGTAGTGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
* * *
14498611 AAGAATTATGTAATATTTTTAATTATGTTGTGATTCA
1 AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
14498648 A
1 A
14498649 TTCGGGTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.37, C:0.03, G:0.13, T:0.47
Consensus pattern (37 bp):
AAGAATTATATAATATTTTTAATTATGTAGTAATTCA
Found at i:14498955 original size:20 final size:20
Alignment explanation
Indices: 14498930--14498970 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14498920 TTAGGAATAG
14498930 TGGGGTCAAGTCATGAACAA
1 TGGGGTCAAGTCATGAACAA
* *
14498950 TGGGGTCATGTCGTGAACAA
1 TGGGGTCAAGTCATGAACAA
14498970 T
1 T
14498971 AATAGTATGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.29, C:0.15, G:0.32, T:0.24
Consensus pattern (20 bp):
TGGGGTCAAGTCATGAACAA
Found at i:14503543 original size:15 final size:15
Alignment explanation
Indices: 14503523--14503553 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14503513 GTTATGTAAG
14503523 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
14503538 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
14503553 T
1 T
14503554 ATGTTGTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:14507280 original size:20 final size:19
Alignment explanation
Indices: 14507257--14507297 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
14507247 ACGAGAGTTC
*
14507257 ATGCAAAAAAAACACGTAAA
1 ATGC-AAAAAAACACATAAA
*
14507277 ATGCAAGAAAACACATAAA
1 ATGCAAAAAAACACATAAA
14507296 AT
1 AT
14507298 AAAGAAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 15 0.79
20 4 0.21
ACGTcount: A:0.63, C:0.15, G:0.10, T:0.12
Consensus pattern (19 bp):
ATGCAAAAAAACACATAAA
Found at i:14507304 original size:18 final size:19
Alignment explanation
Indices: 14507265--14507305 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
14507255 TCATGCAAAA
* *
14507265 AAAACACGTAAAATGCAAG
1 AAAACACATAAAATGAAAG
14507284 AAAACACATAAAAT-AAAG
1 AAAACACATAAAATGAAAG
14507302 AAAA
1 AAAA
14507306 ATAGTACACA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.68, C:0.12, G:0.10, T:0.10
Consensus pattern (19 bp):
AAAACACATAAAATGAAAG
Found at i:14518669 original size:30 final size:30
Alignment explanation
Indices: 14518611--14518669 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
14518601 TATTTTATTG
*
14518611 TTAATTTTGTTATTATTTTAAATACATTTA
1 TTAATTTTGTTATTATTTTAAAGACATTTA
* *
14518641 TTAATTTTGTTATTATTTTAGAGGCATTT
1 TTAATTTTGTTATTATTTTAAAGACATTT
14518670 GCTTGTTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.59
Consensus pattern (30 bp):
TTAATTTTGTTATTATTTTAAAGACATTTA
Found at i:14519528 original size:14 final size:15
Alignment explanation
Indices: 14519507--14519541 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
14519497 GTTTTCTAAG
14519507 ATAAATAAATGTTTT
1 ATAAATAAATGTTTT
*
14519522 A-AAATAACTGTTTT
1 ATAAATAAATGTTTT
14519536 ATAAAT
1 ATAAAT
14519542 TCTGATAACT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.49, C:0.03, G:0.06, T:0.43
Consensus pattern (15 bp):
ATAAATAAATGTTTT
Found at i:14529271 original size:16 final size:17
Alignment explanation
Indices: 14529237--14529271 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
14529227 CTACTTCAAT
*
14529237 TTATTTTACTGATGTCA
1 TTATTTTACTGATGGCA
14529254 TTATTTTA-TGATGGCA
1 TTATTTTACTGATGGCA
14529270 TT
1 TT
14529272 GTAAGTCCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.23, C:0.09, G:0.14, T:0.54
Consensus pattern (17 bp):
TTATTTTACTGATGGCA
Found at i:14531924 original size:20 final size:20
Alignment explanation
Indices: 14531886--14531927 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
14531876 ACTTCGACAT
*
14531886 CTCTGTTTTCATTTTGGTGC
1 CTCTGTTTTCATTTCGGTGC
14531906 CTCTGTTTTC-TCTTCGGTGC
1 CTCTGTTTTCAT-TTCGGTGC
14531926 CT
1 CT
14531928 TCGATTGCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 1 0.05
20 19 0.95
ACGTcount: A:0.02, C:0.26, G:0.19, T:0.52
Consensus pattern (20 bp):
CTCTGTTTTCATTTCGGTGC
Found at i:14535649 original size:6 final size:6
Alignment explanation
Indices: 14535638--14535677 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
14535628 AGGTTTCCAA
* *
14535638 AAATGG AAATGG AAATGG AAATGG AAATGA AAATGT AAAT
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAAT
14535678 AACTCATTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.55, C:0.00, G:0.25, T:0.20
Consensus pattern (6 bp):
AAATGG
Found at i:14535895 original size:26 final size:26
Alignment explanation
Indices: 14535824--14535895 Score: 74
Period size: 25 Copynumber: 2.8 Consensus size: 26
14535814 TATTTTCTCG
*
14535824 AAATTTTACTAGGGGCAAAATCATCA
1 AAATTTTACTAGGGGTAAAATCATCA
* * * * *
14535850 AAATTTT-CCAAGGATAAAATCGTTA
1 AAATTTTACTAGGGGTAAAATCATCA
*
14535875 GAATTTTACTAGGGGTAAAAT
1 AAATTTTACTAGGGGTAAAAT
14535896 AGGGATGAGA
Statistics
Matches: 35, Mismatches: 10, Indels: 2
0.74 0.21 0.04
Matches are distributed among these distances:
25 18 0.51
26 17 0.49
ACGTcount: A:0.42, C:0.11, G:0.17, T:0.31
Consensus pattern (26 bp):
AAATTTTACTAGGGGTAAAATCATCA
Found at i:14542544 original size:43 final size:43
Alignment explanation
Indices: 14542482--14542611 Score: 179
Period size: 43 Copynumber: 3.0 Consensus size: 43
14542472 CATAGGATTT
** *
14542482 TCGATATGTGTTTTTGTGTAAGGCCACGTCTGGGACGTTGGCA
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCA
* * * *
14542525 TCGATTTGTGTTTACGTGTAAGACCATGTCTGGGACATTGGTA
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCA
* *
14542568 TCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCA
14542611 T
1 T
14542612 TGTACGAGCC
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.21, C:0.16, G:0.29, T:0.34
Consensus pattern (43 bp):
TCGATATGTGTTTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:14552134 original size:16 final size:17
Alignment explanation
Indices: 14552103--14552135 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
14552093 ATAAAACTAC
14552103 TTAATAATGATATTAAAA
1 TTAATAAT-ATATTAAAA
14552121 TTAATAAT-TATTAAA
1 TTAATAATATATTAAA
14552136 GCTAAGGCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (17 bp):
TTAATAATATATTAAAA
Found at i:14553643 original size:28 final size:27
Alignment explanation
Indices: 14553628--14553683 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 27
14553618 TATTTCTCAC
14553628 GTCTTGACGGACTTACCTCGTATTTACT
1 GTCTTGACGGACTTACCTC-TATTTACT
*
14553656 GTCTTGACGGACTTACCTCGTGTTTACT
1 GTCTTGACGGACTTACCTC-TATTTACT
14553684 ATCTCGATTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.16, C:0.25, G:0.20, T:0.39
Consensus pattern (27 bp):
GTCTTGACGGACTTACCTCTATTTACT
Found at i:14553697 original size:28 final size:28
Alignment explanation
Indices: 14553633--14553690 Score: 71
Period size: 28 Copynumber: 2.1 Consensus size: 28
14553623 CTCACGTCTT
* * *
14553633 GACGGACTTACCTCGTATTTACTGTCTT
1 GACGAACTTACCTCGTATTTACTATCTC
* *
14553661 GACGGACTTACCTCGTGTTTACTATCTC
1 GACGAACTTACCTCGTATTTACTATCTC
14553689 GA
1 GA
14553691 TTAACTTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (28 bp):
GACGAACTTACCTCGTATTTACTATCTC
Found at i:14554001 original size:51 final size:51
Alignment explanation
Indices: 14553946--14554135 Score: 150
Period size: 51 Copynumber: 3.7 Consensus size: 51
14553936 TTTCCATGTC
* * ** *
14553946 GCCATAGCATCTTTCATCCATTGTCTTACGTTATGTACCTTATACCAGACT
1 GCCATAGCATCTTTCATCTATAGTCTTACGCAATATACCTTATACCAGACT
* * *
14553997 GCCATAATC-TCTTTCATCTATAGTCTTACGCCATATATCTTATACCAGA-T
1 GCCAT-AGCATCTTTCATCTATAGTCTTACGCAATATACCTTATACCAGACT
* * * * * * * *
14554047 AGTCATAGCCTGTTTAATATATGGTCTTACACAATATACCTTATACTAGACT
1 -GCCATAGCATCTTTCATCTATAGTCTTACGCAATATACCTTATACCAGACT
* * * * * *
14554099 ACCATAGCATGTTTCATCTCTACTCTTATGCCATATA
1 GCCATAGCATCTTTCATCTATAGTCTTACGCAATATA
14554136 TCGTCATCAC
Statistics
Matches: 107, Mismatches: 28, Indels: 8
0.75 0.20 0.06
Matches are distributed among these distances:
50 3 0.03
51 101 0.94
52 3 0.03
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.37
Consensus pattern (51 bp):
GCCATAGCATCTTTCATCTATAGTCTTACGCAATATACCTTATACCAGACT
Found at i:14566285 original size:9 final size:9
Alignment explanation
Indices: 14566271--14566299 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14566261 TTTAAAGTTT
14566271 AGTAGCTTA
1 AGTAGCTTA
14566280 AGTAGCTTA
1 AGTAGCTTA
14566289 AGTAGC-TA
1 AGTAGCTTA
14566297 AGT
1 AGT
14566300 GTTAGTCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 5 0.25
9 15 0.75
ACGTcount: A:0.34, C:0.10, G:0.24, T:0.31
Consensus pattern (9 bp):
AGTAGCTTA
Found at i:14566727 original size:54 final size:54
Alignment explanation
Indices: 14566652--14566776 Score: 146
Period size: 54 Copynumber: 2.3 Consensus size: 54
14566642 CATGACCTGA
* * * * *
14566652 GACATGGCTGTGTGATC-CAAGTTAGTGAGTTGCATGGGC-AGAGACACGGGCTAG
1 GACACGGCCGTGTG-TCTCAAGTTAGTGAGTTACACGAGCAAG-GACACGGGCTAG
*
14566706 GACACGGCCGTGTGTCTCAAGTTAGTGAGTTACACGAGCAAGGACACGGGCTGG
1 GACACGGCCGTGTGTCTCAAGTTAGTGAGTTACACGAGCAAGGACACGGGCTAG
* *
14566760 GATACGGTCGTGTGTCT
1 GACACGGCCGTGTGTCT
14566777 AATTTCGAGA
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
53 2 0.03
54 57 0.93
55 2 0.03
ACGTcount: A:0.22, C:0.19, G:0.36, T:0.22
Consensus pattern (54 bp):
GACACGGCCGTGTGTCTCAAGTTAGTGAGTTACACGAGCAAGGACACGGGCTAG
Found at i:14574101 original size:16 final size:16
Alignment explanation
Indices: 14574058--14574105 Score: 53
Period size: 16 Copynumber: 3.0 Consensus size: 16
14574048 CACGGCTATG
14574058 CCACACG-TCCGTGTGC
1 CCACACGCT-CGTGTGC
* *
14574074 CCATACGTTCGTGTGC
1 CCACACGCTCGTGTGC
*
14574090 CCACATGCTCGTGTGC
1 CCACACGCTCGTGTGC
14574106 TAGGCCGTGT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
16 26 0.96
17 1 0.04
ACGTcount: A:0.12, C:0.38, G:0.25, T:0.25
Consensus pattern (16 bp):
CCACACGCTCGTGTGC
Found at i:14579422 original size:25 final size:25
Alignment explanation
Indices: 14579371--14579455 Score: 86
Period size: 25 Copynumber: 3.4 Consensus size: 25
14579361 TCCTGTACAT
*
14579371 GTATGCTCA-ACGAGCTGTGAA-TCG
1 GTATGCTCACACGAGCTGT-AATTTG
* *
14579395 GTATGCTCACTCGAGTTGTAGA-TTG
1 GTATGCTCACACGAGCTGTA-ATTTG
* *
14579420 GTATGCTCTCACGAGCTGTAATTTA
1 GTATGCTCACACGAGCTGTAATTTG
14579445 GTATGCTCACA
1 GTATGCTCACA
14579456 TGAACTATAG
Statistics
Matches: 50, Mismatches: 8, Indels: 5
0.79 0.13 0.08
Matches are distributed among these distances:
24 11 0.22
25 39 0.78
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.32
Consensus pattern (25 bp):
GTATGCTCACACGAGCTGTAATTTG
Found at i:14583637 original size:20 final size:20
Alignment explanation
Indices: 14583612--14583677 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
14583602 GGTCACACGT
*
14583612 CCCCTGTTTATACTTCAGTA
1 CCCCTGTTTGTACTTCAGTA
* * * *
14583632 CCCCTGATTGCACAT-ACGTG
1 CCCCTGTTTGTACTTCA-GTA
*
14583652 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTCAGTA
14583672 CCCCTG
1 CCCCTG
14583678 AATGCATTTA
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.03
20 33 0.97
ACGTcount: A:0.15, C:0.35, G:0.17, T:0.33
Consensus pattern (20 bp):
CCCCTGTTTGTACTTCAGTA
Found at i:14583667 original size:40 final size:39
Alignment explanation
Indices: 14583608--14583683 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 39
14583598 CAGAGGTCAC
*
14583608 ACGTCCCCTGTTTATACTTCAGTACCCCTGATTGCACAT
1 ACGTCCCCTGTTTATACTTCAGTACCCCTGAATGCACAT
* *
14583647 ACGTGCCCCTGTTTGTACTTCGGTACCCCTGAATGCA
1 ACGT-CCCCTGTTTATACTTCAGTACCCCTGAATGCA
14583684 TTTATGTGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 4 0.12
40 29 0.88
ACGTcount: A:0.18, C:0.33, G:0.17, T:0.32
Consensus pattern (39 bp):
ACGTCCCCTGTTTATACTTCAGTACCCCTGAATGCACAT
Found at i:14584936 original size:26 final size:29
Alignment explanation
Indices: 14584907--14584961 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 29
14584897 TTTAGGGACA
*
14584907 ATATGTGTAT-GTAT-GATTGAT-TTATG
1 ATATGTGTATAGTATAGAATGATATTATG
*
14584933 ATATGTTTATAGTATAGAATGATATTATG
1 ATATGTGTATAGTATAGAATGATATTATG
14584962 TTTAGATGTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 9 0.38
27 4 0.17
28 6 0.25
29 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (29 bp):
ATATGTGTATAGTATAGAATGATATTATG
Found at i:14590838 original size:52 final size:52
Alignment explanation
Indices: 14590758--14590863 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 52
14590748 TTACATAACT
14590758 TAGTAAGATCATAGTATTACATTAAATTTAACACAATTAGATACAATCCATG
1 TAGTAAGATCATAGTATTACATTAAATTTAACACAATTAGATACAATCCATG
*
14590810 TAGTAAGATCATAGTATTACATTCAATTTAACACAATTAGATACAATCCATG
1 TAGTAAGATCATAGTATTACATTAAATTTAACACAATTAGATACAATCCATG
14590862 TA
1 TA
14590864 CTACTAGCCT
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.33
Consensus pattern (52 bp):
TAGTAAGATCATAGTATTACATTAAATTTAACACAATTAGATACAATCCATG
Found at i:14590936 original size:28 final size:28
Alignment explanation
Indices: 14590893--14590977 Score: 143
Period size: 28 Copynumber: 3.0 Consensus size: 28
14590883 CTAGAGTATA
*
14590893 AACAACACACATAAATGCGTTCAGGGGT
1 AACAACACACGTAAATGCGTTCAGGGGT
*
14590921 AACAACACACGCAAATGCGTTCAGGGGT
1 AACAACACACGTAAATGCGTTCAGGGGT
*
14590949 AACAACACACGTAAATGTGTTCAGGGGT
1 AACAACACACGTAAATGCGTTCAGGGGT
14590977 A
1 A
14590978 CCGAAGTACA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 53 1.00
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.18
Consensus pattern (28 bp):
AACAACACACGTAAATGCGTTCAGGGGT
Found at i:14591029 original size:20 final size:20
Alignment explanation
Indices: 14590970--14591035 Score: 64
Period size: 20 Copynumber: 3.3 Consensus size: 20
14590960 TAAATGTGTT
*
14590970 CAGGGGTACCGAAGTACAAA
1 CAGGGGTAACGAAGTACAAA
* *
14590990 CAGTGG-AACGTATA-TGCAAA
1 CAGGGGTAACG-A-AGTACAAA
*
14591010 CAGGGGTATCGAAGTACAAA
1 CAGGGGTAACGAAGTACAAA
14591030 CAGGGG
1 CAGGGG
14591036 CACATATGTG
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
19 4 0.11
20 28 0.78
21 4 0.11
ACGTcount: A:0.38, C:0.17, G:0.32, T:0.14
Consensus pattern (20 bp):
CAGGGGTAACGAAGTACAAA
Found at i:14597944 original size:29 final size:29
Alignment explanation
Indices: 14597886--14597944 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
14597876 TCAAAATTTT
* * *
14597886 AAAATTCTATATATTTAAATTCTCACAAA
1 AAAATTCTATAAATTTAAAATCTCAAAAA
14597915 AAAATTCTATAAATTTCAAAAT-TCAAAAA
1 AAAATTCTATAAATTT-AAAATCTCAAAAA
14597944 A
1 A
14597945 TAAAAATAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 22 0.85
30 4 0.15
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (29 bp):
AAAATTCTATAAATTTAAAATCTCAAAAA
Found at i:14604630 original size:21 final size:21
Alignment explanation
Indices: 14604606--14604645 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
14604596 TAAAATTTTT
14604606 TATGATT-AAATTATTATTAAA
1 TATGATTGAAATTA-TATTAAA
*
14604627 TATGCTTGAAATTATATTA
1 TATGATTGAAATTATATTA
14604646 TTATATATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.47
Consensus pattern (21 bp):
TATGATTGAAATTATATTAAA
Found at i:14604660 original size:22 final size:23
Alignment explanation
Indices: 14604617--14604661 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
14604607 ATGATTAAAT
14604617 TATTATTAAATATGCTTGAAATTA
1 TATTATTAAATAT-CTTGAAATTA
* *
14604641 TATTATTATATAT-TTTAAATT
1 TATTATTAAATATCTTGAAATT
14604662 GAATTTATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 7 0.37
24 12 0.63
ACGTcount: A:0.40, C:0.02, G:0.04, T:0.53
Consensus pattern (23 bp):
TATTATTAAATATCTTGAAATTA
Found at i:14611762 original size:101 final size:102
Alignment explanation
Indices: 14611628--14611812 Score: 268
Period size: 101 Copynumber: 1.8 Consensus size: 102
14611618 AAAGTGATGG
* * *
14611628 TCACTTGTGTAGTATGATGTGCAGGCTACTACGTGTATCAGA-A-TGATAGGTCGCATTTATAGT
1 TCACGTGTGTAGTATGATGTGCAGGCTAATACGTGTATCAGATAGTGAT-GGTCACATTTATAGT
14611691 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * *
14611729 TCACGTGTGTAGTACT-ATGTGGAGGCTAATACGTGTATCGGATAGTGATGGTCACATTTGTAGT
1 TCACGTGTGTAGTA-TGATGTGCAGGCTAATACGTGTATCAGATAGTGATGGTCACATTTATAGT
*
14611793 ATTATGTGCAGGCTACTATG
65 ACTATGTGCAGGCTACTATG
14611813 TGAACTGGTA
Statistics
Matches: 74, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
101 36 0.49
102 34 0.46
103 4 0.05
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (102 bp):
TCACGTGTGTAGTATGATGTGCAGGCTAATACGTGTATCAGATAGTGATGGTCACATTTATAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:14611791 original size:51 final size:52
Alignment explanation
Indices: 14611620--14611810 Score: 182
Period size: 51 Copynumber: 3.8 Consensus size: 52
14611610 TGAAAGTGAA
*
14611620 AGTGAT-GGTCAC-TTGTGTAGTA-TGATGTGCAGGCTACTACGTGTATCAGA-
1 AGTGATAGGTCACATT-TGTAGTACT-ATGTGCAGGCTACTACGTGTATCGGAT
* * * * *
14611670 A-TGATAGGTCGCATTTATAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGATAGGTCACATTTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
* * * * * *
14611721 AGCT--TCGATCACGTGTGTAGTACTATGTGGAGGCTAATACGTGTATCGGAT
1 AG-TGATAGGTCACATTTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
*
14611772 AGTGAT-GGTCACATTTGTAGTATTATGTGCAGGCTACTA
1 AGTGATAGGTCACATTTGTAGTACTATGTGCAGGCTACTA
14611811 TGTGAACTGG
Statistics
Matches: 110, Mismatches: 23, Indels: 15
0.74 0.16 0.10
Matches are distributed among these distances:
49 4 0.04
50 35 0.32
51 69 0.63
52 1 0.01
53 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (52 bp):
AGTGATAGGTCACATTTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
Found at i:14612059 original size:16 final size:16
Alignment explanation
Indices: 14612038--14612069 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14612028 TGATTGAAAG
*
14612038 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
14612054 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
14612070 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:14617503 original size:101 final size:102
Alignment explanation
Indices: 14617382--14617566 Score: 302
Period size: 101 Copynumber: 1.8 Consensus size: 102
14617372 AAAGTGATGG
* * *
14617382 TCACGTGTGTAGTGCTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACGTGTACCAGATAGTGAT-GGTCACATGTGTAGT
14617445 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
*
14617483 TCACGTGTGTAGTACTATGTGGAGGCTAATACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTAATACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
*
14617548 CTATGTGTAGGCTACTATG
66 CTATGTGCAGGCTACTATG
14617567 TGAACCAGTA
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
101 39 0.51
102 34 0.44
103 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.30
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTAATACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:14617574 original size:51 final size:52
Alignment explanation
Indices: 14617374--14617574 Score: 225
Period size: 51 Copynumber: 4.0 Consensus size: 52
14617364 TGAAAGTGAA
* * *
14617374 AGTGAT-GGTCACGTGTGTAGTGCTATGTGCAGGCTACTACGTGTACCAGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAT
* * *
14617424 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAT
* * * * * *
14617475 AGCT--TCGATCACGTGTGTAGTACTATGTGGAGGCTAATACGTGTACCAGAT
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAT
* *
14617526 AGTGAT-GGTCACATGTGTAGTACTATGTGTAGGCTACTATGTGAACCAG
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAG
14617575 TATCATTAAT
Statistics
Matches: 124, Mismatches: 21, Indels: 11
0.79 0.13 0.07
Matches are distributed among these distances:
49 4 0.03
50 40 0.32
51 78 0.63
52 1 0.01
53 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAT
Found at i:14617813 original size:16 final size:16
Alignment explanation
Indices: 14617792--14617823 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14617782 TGATTGAAAG
*
14617792 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
14617808 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
14617824 GCAACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:14622016 original size:14 final size:13
Alignment explanation
Indices: 14621979--14622034 Score: 53
Period size: 14 Copynumber: 4.3 Consensus size: 13
14621969 TTAGTAGGTT
14621979 TTTTTCTTT-TTA
1 TTTTTCTTTATTA
**
14621991 TTTATTGATTATTA
1 TTT-TTCTTTATTA
14622005 TTTTTCTCTTATTA
1 TTTTTCT-TTATTA
*
14622019 TTATTCTTT-TTA
1 TTTTTCTTTATTA
14622031 TTTT
1 TTTT
14622035 GTTACTACTT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 9 0.26
13 8 0.23
14 18 0.51
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (13 bp):
TTTTTCTTTATTA
Found at i:14623499 original size:5 final size:6
Alignment explanation
Indices: 14623430--14623499 Score: 50
Period size: 6 Copynumber: 11.5 Consensus size: 6
14623420 GTATTATTGA
* * * * * *
14623430 TTTTATT TTTTCT TTTTAG TTTTAG TATTAG TTTTAT TTTTAT GTTTAT
1 TTTTA-T TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* **
14623479 GTCCAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTT
14623500 CTTAGACTTT
Statistics
Matches: 51, Mismatches: 12, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
6 47 0.92
7 4 0.08
ACGTcount: A:0.16, C:0.04, G:0.07, T:0.73
Consensus pattern (6 bp):
TTTTAT
Found at i:14627927 original size:11 final size:11
Alignment explanation
Indices: 14627911--14627942 Score: 55
Period size: 11 Copynumber: 2.8 Consensus size: 11
14627901 TAAGCCAAAC
14627911 ACAAAAAAAAA
1 ACAAAAAAAAA
14627922 ACAAAAAAAAA
1 ACAAAAAAAAA
14627933 ACCAAAAAAA
1 A-CAAAAAAA
14627943 TAGGAAATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.60
12 8 0.40
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (11 bp):
ACAAAAAAAAA
Found at i:14627930 original size:12 final size:12
Alignment explanation
Indices: 14627907--14627942 Score: 54
Period size: 12 Copynumber: 2.9 Consensus size: 12
14627897 CACATAAGCC
14627907 AAACACAAAAAAA
1 AAACA-AAAAAAA
14627920 AAACAAAAAAAA
1 AAACAAAAAAAA
*
14627932 AACCAAAAAAA
1 AAACAAAAAAA
14627943 TAGGAAATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (12 bp):
AAACAAAAAAAA
Found at i:14627954 original size:15 final size:15
Alignment explanation
Indices: 14627936--14627966 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
14627926 AAAAAAAACC
*
14627936 AAAAAAATAGGAAAT
1 AAAAAAATAGAAAAT
14627951 AAAAAAATAGAAAAT
1 AAAAAAATAGAAAAT
14627966 A
1 A
14627967 TGTTCCAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AAAAAAATAGAAAAT
Found at i:14634198 original size:18 final size:18
Alignment explanation
Indices: 14634143--14634202 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 18
14634133 TGGTGAATTA
*
14634143 TATTATTATGGCGAACTG
1 TATTAATATGGCGAACTG
* * * *
14634161 TGTTAATCTGG-TATCTG
1 TATTAATATGGCGAACTG
14634178 TATTAATATGGCGAACTG
1 TATTAATATGGCGAACTG
14634196 TATTAAT
1 TATTAAT
14634203 TTGCCAAACC
Statistics
Matches: 32, Mismatches: 9, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
17 13 0.41
18 19 0.59
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (18 bp):
TATTAATATGGCGAACTG
Found at i:14636893 original size:43 final size:43
Alignment explanation
Indices: 14636830--14636912 Score: 157
Period size: 43 Copynumber: 1.9 Consensus size: 43
14636820 TTACTTTACC
14636830 ACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTATTTTTT
1 ACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTATTTTTT
*
14636873 ACTTAAACTCTGATTCGTGTAGGTTATTTTAATATTATTT
1 ACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTATTT
14636913 GACCTACAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.28, C:0.08, G:0.12, T:0.52
Consensus pattern (43 bp):
ACTTAAACTCTGATTAGTGTAGGTTATTTTAATATTATTTTTT
Found at i:14638838 original size:44 final size:44
Alignment explanation
Indices: 14638772--14638862 Score: 164
Period size: 44 Copynumber: 2.1 Consensus size: 44
14638762 AACTCTGTTT
*
14638772 TTAGTTTACCACTTAAATTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
*
14638816 TTAGTTTCCCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
1 TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
14638860 TTA
1 TTA
14638863 TTTGACCTAC
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (44 bp):
TTAGTTTACCACTTAAACTCTGATTAGTGTAGGTTATTTTAATA
Found at i:14641855 original size:46 final size:47
Alignment explanation
Indices: 14641755--14641865 Score: 143
Period size: 46 Copynumber: 2.4 Consensus size: 47
14641745 GTGGTTTAAC
* *
14641755 CACATATTTGTTCTAGCAACTTGACTACAAATATAGTGGCTTGACCA
1 CACATATCTGTTCTGGCAACTTGACTACAAATATAGTGGCTTGACCA
* * *
14641802 CACATATCTGTTCTGGCAGCTTGACTGC-AATATAGTGGCTTGACTA
1 CACATATCTGTTCTGGCAACTTGACTACAAATATAGTGGCTTGACCA
* **
14641848 CATATATCTAATCTGGCA
1 CACATATCTGTTCTGGCA
14641866 TTTTAACTGC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
46 32 0.57
47 24 0.43
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (47 bp):
CACATATCTGTTCTGGCAACTTGACTACAAATATAGTGGCTTGACCA
Found at i:14641875 original size:46 final size:46
Alignment explanation
Indices: 14641784--14641877 Score: 125
Period size: 46 Copynumber: 2.0 Consensus size: 46
14641774 CTTGACTACA
** *
14641784 AATATAGTGGCTTGACCACACATATCTGTTCTGGCAGCTTGACTGC
1 AATATAGTGGCTTGACCACACATATCTAATCTGGCAGCTTAACTGC
* * **
14641830 AATATAGTGGCTTGACTACATATATCTAATCTGGCATTTTAACTGC
1 AATATAGTGGCTTGACCACACATATCTAATCTGGCAGCTTAACTGC
14641876 AA
1 AA
14641878 CGGTGGTGAC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
46 41 1.00
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (46 bp):
AATATAGTGGCTTGACCACACATATCTAATCTGGCAGCTTAACTGC
Found at i:14650227 original size:14 final size:15
Alignment explanation
Indices: 14650204--14650232 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
14650194 TATTTAGATG
14650204 TTTTGATTATTAAAT
1 TTTTGATTATTAAAT
14650219 TTTTG-TTATTAAAT
1 TTTTGATTATTAAAT
14650233 ATTCTTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.31, C:0.00, G:0.07, T:0.62
Consensus pattern (15 bp):
TTTTGATTATTAAAT
Found at i:14655703 original size:393 final size:395
Alignment explanation
Indices: 14653120--14669253 Score: 29851
Period size: 395 Copynumber: 41.0 Consensus size: 395
14653110 TTGCTTATAA
* * *
14653120 TATTGCTATTGACATAATAAAAGAAAATGAGGATCTTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14653185 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACG
14653249 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
*
14653314 TTGTATAAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* *
14653379 TTTTCACAAAGGTCTGGCATTGATTATGAATAGACATATTTTACTGTGGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
* *
14653444 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGGCATGCATTTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14653509 CCTATT
390 CCTATT
14653515 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14653580 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14653645 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14653710 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14653775 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACATTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14653840 AGATATCTTATTAGTACGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14653905 CTATT
391 CTATT
14653910 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14653975 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14654040 GAAGTTTTTGGACATGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14654105 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14654170 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
** *
14654235 AGATATCTTATTAGTATGATAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTATTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14654300 CTATT
391 CTATT
*
14654305 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATATAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
14654370 ATAGAAAAGATTGGAAAAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGG-CAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
* * * *
14654435 TGAAGTTTTTGGACCAGTAGTCCAAACACGTAAATGTGTAAAGCCAGTAGGATATAAATAAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
*
14654500 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGAATTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* * * * *
14654565 TTTACACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
* *
14654630 TAGATATCTTATTAGTATAGCAGTACGTAAAAAGCTTGACATGCATCTAATGGGTGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14654695 CCTATT
390 CCTATT
*
14654701 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCCT-AGTCTAAATCTATTGAGAAATGTAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGAT-CCTGAGTCTAAATCTATTGAGGAATGTAAA
14654765 AATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
65 AATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
*
14654830 TGAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
14654895 TTGTATG-AAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGA--TGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
14654957 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
*
14655022 TAGATATCTTATTAATATGGCAGTACGTAAAAA-CTTGACATGCATCTAAT-GATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14655085 CCTATT
390 CCTATT
*
14655091 TATTGCTATAGAAATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14655156 ATAGAAAAGATTGGCAAAAATGGAAAGATGTAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14655221 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14655286 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14655351 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14655416 AGATATCTTATTAATATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14655481 CTATT
391 CTATT
*
14655486 TATTGCTATAGAAA-AATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14655550 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14655615 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14655680 T-TATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* *
14655744 TTTCACAAAGGCCTGGCATTCATTATGAATAGACATATTTTCTTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14655809 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14655874 CTATT
391 CTATT
*
14655879 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTAAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
14655944 ATAGAAAAGATTGG-AAAAATGAAAAGATGCAATTCAAGCTAAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14656008 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGG-GTAAAGCCAGTAGGATATAAATAAGTAT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAA-GGTGTAAAGCCAGTAGGATATAAATGAGTAT
14656072 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
*
14656137 TTTTCACAAAGGCCT-GCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
* *
14656201 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGCTATTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14656266 CCTATT
390 CCTATT
*
14656272 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATATAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
14656337 ATAGAAAAGATTGGAAAAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGG-CAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
* * * * *
14656402 TGAAGTTTTTGGACCAGTAGTCCAAACACGTAAATGTGTAAAGCCAGTAGAATATAAATAAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
*
14656467 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGAATTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* * * *
14656532 TTTT-ACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
*
14656596 TAGATATCTTATTAGTATAGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14656661 CCTATT
390 CCTATT
* *
14656667 TATTACTATAGAAATAATAAAAGAAAATGAGGATCCCT-AGTCTAAATCTATTGAGAAATGTAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGAT-CCTGAGTCTAAATCTATTGAGGAATGTAAA
14656731 AATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
65 AATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
14656796 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
14656861 TTGTATG-AAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGA--TGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
14656923 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
14656988 TAGATATCTTATTA--ATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14657051 CCTATT
390 CCTATT
*
14657057 TATTGCTATAGAAATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14657122 ATAGAAAAGATTGGCAAAAATGGAAAGATGTAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14657187 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14657252 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14657317 TTTCACAAAGGCCTGGCATTAATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14657382 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14657447 CTATT
391 CTATT
*
14657452 TATTGCTATAG-AATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14657516 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14657581 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14657646 T-TATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14657710 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14657774 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14657839 CTATT
391 CTATT
14657844 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14657909 ATAGAAAAGATTGG-AAAAATGAAAAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* * *
14657972 GAAGTTTTTGGTCCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14658037 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14658102 TTTCACAAAGGCCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14658167 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14658232 CTATT
391 CTATT
*
14658237 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATATAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* * *
14658302 ATAGAAAAGATTGGAAAAAAATGAAAAGATGCAATTCAAGCTCAATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGG-CAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
* * *
14658367 TGAAGTTTTTGGACCAGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
14658432 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGA-TTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* * * *
14658496 TTTAT-ACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATCACGT
260 TTT-TCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGT
*
14658560 TTAGATATCTTATTAGTATAGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACA
324 TTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACA
14658625 TCCTATT
389 TCCTATT
14658632 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCT-AGTCTAAATCTATTGA-GAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14658695 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14658760 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14658825 TGTATG-AAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14658889 TTTCACAAAGGCCTGGCATTAATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14658954 AGATATCTTATTAGTACGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14659019 CTATT
391 CTATT
*
14659024 TATTGCTATAGAAATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14659089 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14659154 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14659219 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14659284 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14659349 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14659414 CTATT
391 CTATT
14659419 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14659484 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14659549 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14659614 T-TATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14659678 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14659742 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14659807 CTATT
391 CTATT
14659812 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14659877 ATAGAAAAGATTGG-AAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14659941 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14660006 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * *
14660071 TTTCACAAAGGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14660136 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14660201 CTATT
391 CTATT
14660206 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCC-GAGTCTAAATCTATTGA-GAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14660269 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14660333 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14660398 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14660463 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14660528 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14660593 CTATT
391 CTATT
14660598 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14660663 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14660728 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14660793 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14660858 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14660923 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14660988 CTATT
391 CTATT
14660993 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14661058 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14661123 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14661188 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14661253 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14661317 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14661382 CTATT
391 CTATT
*
14661387 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATATAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14661452 ATAGAAAAGATTGG-AAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14661516 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14661581 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14661646 TTTCACAAAGGCCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14661711 AGATATCTTATTAGTATGGCAATACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14661776 CTATT
391 CTATT
14661781 TATTGCTATAGAAATAAT-AAAGAAAATGAGGATCC-GAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14661844 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14661909 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGCAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14661974 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA-
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14662038 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCATGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14662102 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14662167 CTATT
391 CTATT
14662172 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCT-AGTCTAAATCTATTGA-GAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14662235 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14662300 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14662365 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14662430 TTTCA-AAA-GCCTGGCATTCATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14662492 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14662557 CTATT
391 CTATT
14662562 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14662627 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14662692 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14662757 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14662822 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14662887 AGATATCTTATTATTATGGCAGTACGTAAAAAGCTTGACATGCATCTAAT-GATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14662951 CTATT
391 CTATT
14662956 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14663021 ATAGAAAAGATTGGCAAAAAT-GAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14663085 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14663150 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14663215 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CT-TGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14663278 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14663343 CTATT
391 CTATT
14663348 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14663413 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14663478 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14663543 TGTATGAAAATGAAATGAAGTTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14663608 TTTCACAAAGGCCTGGCATTCATT-TGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14663672 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14663737 CTATT
391 CTATT
*
14663742 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGATGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
14663807 ATAGAAAAGATTGGAAAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14663872 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14663937 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * *
14664002 TTTCACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGT-GTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14664066 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14664131 CTATT
391 CTATT
* *
14664136 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGAAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14664201 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACG
*
14664265 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGCAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
14664330 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
*
14664395 -TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCATGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
14664458 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14664523 CCTATT
390 CCTATT
* *
14664529 TATTGTTATAG--A-AGTAAAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14664590 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14664655 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATTAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14664720 TGTATGAAAATGAAATGAAATTGATGAATTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * * *
14664785 TTTCATAAAAGCCTGGCATTCATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
* * *
14664850 AGATATCTTATTGGTATGGCAGTACGTAAAAAGCTTGACTTGCATCTAATGGATATTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14664915 CTATT
391 CTATT
14664920 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14664985 ATAAAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAA-TGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14665049 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14665114 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATAT-AAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14665178 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14665243 AGATATCTTATTATTATGGCAGTACGTAAAAAGCTTGACATGCATCTAAT-GATGTTGTTACAT-
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14665306 CTATT
391 CTATT
14665311 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCT-AGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
14665375 ATA-AAAAGATTGGCAAAAATGAAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14665439 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCA-TAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14665503 TGTAT-AAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * * *
14665567 TTTCACAAAGGCCTGGTATTGATTATGAATAGACATATTTTCATTTGGTGGATGTAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14665632 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14665697 CTATT
391 CTATT
14665702 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14665767 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14665832 GAAGTTTTTGGACATGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14665897 TGTATGAAAATGAAATGAAGTTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14665962 TTTCACAAAGGCCTGGCATTCATT-TGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14666026 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14666091 GTATT
391 CTATT
14666096 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
14666161 ATAGGAAAGATTGGAAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14666226 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14666291 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * * *
14666356 TTTCACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14666421 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14666486 CTATT
391 CTATT
* *
14666491 TATTGCTATAG-AATAATAAAA-AAAATGAGGATCCCGAGTCTAAATCTATTGAGAAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14666554 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACG
*
14666618 TGAAGTTTTTGGACCTGTAGTCCAAAAACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
14666683 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* *
14666748 TTTTCACAAAGGCTTGGCATTCATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
14666813 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14666878 CCTATT
390 CCTATT
14666884 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14666949 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14667014 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14667079 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14667144 TTTCACAAAGGCCTGGCATTCATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14667209 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14667274 GTATT
391 CTATT
*
14667279 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAGTGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* * *
14667344 ATAGAAAAGATTGGAAAAAATGAAAAGATGCAATTCAAGCTAAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14667409 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14667474 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* *
14667539 TTTCACAAAGGTCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14667604 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14667669 CTATT
391 CTATT
* *
14667674 TATTGCTATAGAAATAATAATAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14667739 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14667804 GAAGTTTTTGGACCTGTAGTCCAAGCACCTAAAGGTGTAGAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14667869 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * *
14667934 TTTCACAAAGGCCTGGCATTCATTATGAATAGACATATTTTCATTTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14667999 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14668064 CTATT
391 CTATT
* *
14668069 TATTGCTATAGAAATAATAATAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14668134 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14668199 GAAGTTTTTGGACCTGTAGTCCAAGCACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14668264 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAA
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * *
14668329 TTTCACAAAGGCCTGACATTGATTATGAATAGACATATTTTTCTGTGGTGGATGCAATCATGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14668394 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14668459 CTATT
391 CTATT
* *
14668464 TATTGTTATAGAAGT-A-AAAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14668526 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14668591 GAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14668656 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14668721 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14668786 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14668851 GTATT
391 CTATT
*
14668856 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTAAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14668921 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCTAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14668986 GAACTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAATAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14669051 TGTATAAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * * *
14669116 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATTTGGTGGATGTAATCACGCTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
* * *
14669181 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGTCATACATCTAATGGATGTTGTTACGTC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14669246 CTATT
391 CTATT
14669251 TAT
1 TAT
14669254 ATGGTACACT
Statistics
Matches: 15318, Mismatches: 339, Indels: 164
0.97 0.02 0.01
Matches are distributed among these distances:
388 35 0.00
389 430 0.03
390 769 0.05
391 829 0.05
392 2025 0.13
393 3033 0.20
394 2809 0.18
395 4875 0.32
396 510 0.03
397 3 0.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (395 bp):
TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
CTATT
Found at i:14656318 original size:787 final size:790
Alignment explanation
Indices: 14653120--14669253 Score: 29851
Period size: 787 Copynumber: 20.5 Consensus size: 790
14653110 TTGCTTATAA
* * *
14653120 TATTGCTATTGACATAATAAAAGAAAATGAGGATCTTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14653185 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACG
14653249 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
*
14653314 TTGTATAAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* *
14653379 TTTTCACAAAGGTCTGGCATTGATTATGAATAGACATATTTTACTGTGGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
* *
14653444 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGGCATGCATTTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14653509 CCTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAAT
390 CCTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAAT
14653574 GTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
455 GTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
*
14653639 AAACGTGAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
520 AAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
14653704 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
585 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
14653769 AAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
650 AAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
* *
14653834 ACATTTAGATATCTTATTAGTACGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
715 ACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
14653899 TACATCCTATT
780 TACATCCTATT
14653910 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14653975 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14654040 GAAGTTTTTGGACATGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14654105 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14654170 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
** *
14654235 AGATATCTTATTAGTATGATAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTATTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14654300 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATA
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
* *
14654365 TAAAAATAGAAAAGATTGGAAAAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
456 TAAAAATAGAAAAGATTGG-CAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
* * * *
14654430 AAACGTGAAGTTTTTGGACCAGTAGTCCAAACACGTAAATGTGTAAAGCCAGTAGGATATAAATA
520 AAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
*
14654495 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGAATTGTAGCAC
585 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
* * * * *
14654560 AAGGATTTACACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATC
650 AAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
* *
14654625 ACGTTTAGATATCTTATTAGTATAGCAGTACGTAAAAAGCTTGACATGCATCTAATGGGTGTTGT
715 ACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
14654690 TACATCCTATT
780 TACATCCTATT
*
14654701 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCCT-AGTCTAAATCTATTGAGAAATGTAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGAT-CCTGAGTCTAAATCTATTGAGGAATGTAAA
14654765 AATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
65 AATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
*
14654830 TGAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
14654895 TTGTATG-AAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGA--TGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
14654957 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
*
14655022 TAGATATCTTATTAATATGGCAGTACGTAAAAA-CTTGACATGCATCTAAT-GATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
*
14655085 CCTATTTATTGCTATAGAAATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAAT
390 CCTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAAT
*
14655150 GTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGTAATTCAAGCTGAATTGAATTCACTTTCT
455 GTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
14655215 AAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
520 AAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
14655280 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
585 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
14655345 AAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
650 AAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
*
14655410 ACGTTTAGATATCTTATTAATATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
715 ACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
14655475 TACATCCTATT
780 TACATCCTATT
*
14655486 TATTGCTATAGAAA-AATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14655550 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14655615 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14655680 T-TATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* *
14655744 TTTCACAAAGGCCTGGCATTCATTATGAATAGACATATTTTCTTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14655809 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14655874 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTAAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
* *
14655939 TAAAAATAGAAAAGATTGG-AAAAATGAAAAGATGCAATTCAAGCTAAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
*
14656003 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGG-GTAAAGCCAGTAGGATATAAATA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAA-GGTGTAAAGCCAGTAGGATATAAATG
14656067 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
585 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
*
14656132 AAGGATTTTCACAAAGGCCT-GCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATC
650 AAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
* *
14656196 ACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGCTAT
715 ACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
14656261 TACATCCTATT
780 TACATCCTATT
*
14656272 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATATAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* *
14656337 ATAGAAAAGATTGGAAAAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGG-CAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACG
* * * * *
14656402 TGAAGTTTTTGGACCAGTAGTCCAAACACGTAAATGTGTAAAGCCAGTAGAATATAAATAAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
*
14656467 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGAATTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* * * *
14656532 TTTT-ACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
*
14656596 TAGATATCTTATTAGTATAGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
* *
14656661 CCTATTTATTACTATAGAAATAATAAAAGAAAATGAGGATCCCT-AGTCTAAATCTATTGAGAAA
390 CCTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGAT-CCTGAGTCTAAATCTATTGAGGAA
14656725 TGTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTC
454 TGTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTC
14656790 TAAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAAT
519 TAAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAAT
14656855 GAGTATTTGTATG-AAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGA--TGTAGCA
584 GAGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCA
14656917 CAAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAAT
649 CAAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAAT
14656982 CACGTTTAGATATCTTATTA--ATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTG
714 CACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTG
14657045 TTACATCCTATT
779 TTACATCCTATT
*
14657057 TATTGCTATAGAAATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14657122 ATAGAAAAGATTGGCAAAAATGGAAAGATGTAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14657187 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14657252 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14657317 TTTCACAAAGGCCTGGCATTAATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14657382 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14657447 CTATTTATTGCTATAG-AATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
14657511 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
14657576 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14657641 GTATTT-TATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
14657705 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14657769 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14657834 ACATCCTATT
781 ACATCCTATT
14657844 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14657909 ATAGAAAAGATTGG-AAAAATGAAAAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* * *
14657972 GAAGTTTTTGGTCCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14658037 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14658102 TTTCACAAAGGCCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14658167 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14658232 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATA
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
* * *
14658297 TAAAAATAGAAAAGATTGGAAAAAAATGAAAAGATGCAATTCAAGCTCAATTGAATTCACTTTCT
456 TAAAAATAGAAAAGATTGG-CAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
* * *
14658362 AAACGTGAAGTTTTTGGACCAGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATA
520 AAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
14658427 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGA-TTGTAGCAC
585 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
* * * *
14658491 AAGGATTTAT-ACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAAT
650 AAGGATTT-TCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAAT
*
14658555 CACGTTTAGATATCTTATTAGTATAGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTG
714 CACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTG
14658620 TTACATCCTATT
779 TTACATCCTATT
14658632 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCT-AGTCTAAATCTATTGA-GAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14658695 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14658760 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14658825 TGTATG-AAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14658889 TTTCACAAAGGCCTGGCATTAATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14658954 AGATATCTTATTAGTACGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14659019 CTATTTATTGCTATAGAAATAATAAAAGAAAACGAGGATCCTGAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
14659084 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
14659149 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14659214 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
14659279 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14659344 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14659409 ACATCCTATT
781 ACATCCTATT
14659419 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14659484 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14659549 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14659614 T-TATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14659678 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14659742 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14659807 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
*
14659872 TAAAAATAGAAAAGATTGG-AAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
* *
14659936 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14660001 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
* * *
14660066 AGGATTTTCACAAAGGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14660131 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14660196 ACATCCTATT
781 ACATCCTATT
14660206 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCC-GAGTCTAAATCTATTGA-GAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14660269 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCT-AATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14660333 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14660398 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14660463 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14660528 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14660593 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
14660658 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
14660723 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14660788 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
14660853 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14660918 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14660983 ACATCCTATT
781 ACATCCTATT
14660993 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14661058 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14661123 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14661188 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
14661253 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14661317 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14661382 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATA
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
*
14661447 TAAAAATAGAAAAGATTGG-AAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
*
14661511 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14661576 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
*
14661641 AGGATTTTCACAAAGGCCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
*
14661706 CGTTTAGATATCTTATTAGTATGGCAATACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14661771 ACATCCTATT
781 ACATCCTATT
14661781 TATTGCTATAGAAATAAT-AAAGAAAATGAGGATCC-GAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14661844 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14661909 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGCAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14661974 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA-
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14662038 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCATGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14662102 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14662167 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCT-AGTCTAAATCTATTGA-GAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
14662230 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
*
14662295 AACGTGAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14662360 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
*
14662425 AGGATTTTCA-AAA-GCCTGGCATTCATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14662487 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14662552 ACATCCTATT
781 ACATCCTATT
14662562 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14662627 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14662692 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14662757 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14662822 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14662887 AGATATCTTATTATTATGGCAGTACGTAAAAAGCTTGACATGCATCTAAT-GATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14662951 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
*
14663016 TAAAAATAGAAAAGATTGGCAAAAAT-GAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
14663080 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14663145 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
14663210 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CT-TGGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14663273 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14663338 ACATCCTATT
781 ACATCCTATT
14663348 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14663413 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
14663478 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14663543 TGTATGAAAATGAAATGAAGTTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14663608 TTTCACAAAGGCCTGGCATTCATT-TGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14663672 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14663737 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGATGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
* *
14663802 TAAAAATAGAAAAGATTGGAAAAAATGAAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
* *
14663867 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14663932 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
* * *
14663997 AGGATTTTCACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGT-GTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14664061 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14664126 ACATCCTATT
781 ACATCCTATT
* *
14664136 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGAAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14664201 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACG
*
14664265 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGCAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
14664330 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
*
14664395 -TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTT-CTGTGGTGGATGCAATCATGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
14664458 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
* *
14664523 CCTATTTATTGTTATAG--A-AGTAAAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAAT
390 CCTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAAT
14664584 GTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
455 GTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
* *
14664649 AAACGTGAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATT
520 AAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
*
14664714 AGTATTTGTATGAAAATGAAATGAAATTGATGAATTCGTAAGATATAAAGCTCGATTTGTAGCAC
585 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
* * * *
14664779 AAGGATTTTCATAAAAGCCTGGCATTCATTATGAATAGACATATTTTCATGTGGTGGATGCAATC
650 AAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
* * *
14664844 ACGTTTAGATATCTTATTGGTATGGCAGTACGTAAAAAGCTTGACTTGCATCTAATGGATATTGT
715 ACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
14664909 TACATCCTATT
780 TACATCCTATT
14664920 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14664985 ATAAAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAA-TGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14665049 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14665114 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATAT-AAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14665178 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
*
14665243 AGATATCTTATTATTATGGCAGTACGTAAAAAGCTTGACATGCATCTAAT-GATGTTGTTACAT-
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14665306 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCT-AGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
* *
14665370 TAAAAATA-AAAAGATTGGCAAAAATGAAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
14665434 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCA-TAGGATATAAATGA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14665498 GTATTTGTAT-AAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
* * * *
14665562 AGGATTTTCACAAAGGCCTGGTATTGATTATGAATAGACATATTTTCATTTGGTGGATGTAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14665627 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14665692 ACATCCTATT
781 ACATCCTATT
14665702 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14665767 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14665832 GAAGTTTTTGGACATGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14665897 TGTATGAAAATGAAATGAAGTTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
*
14665962 TTTCACAAAGGCCTGGCATTCATT-TGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14666026 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
*
14666091 GTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
* *
14666156 TAAAAATAGGAAAGATTGGAAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
* *
14666221 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14666286 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
* * * *
14666351 AGGATTTTCACAAATGTCTGGCATTGATCATGAATAGACATATTTTCCTGTAGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14666416 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14666481 ACATCCTATT
781 ACATCCTATT
* *
14666491 TATTGCTATAG-AATAATAAAA-AAAATGAGGATCCCGAGTCTAAATCTATTGAGAAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
14666554 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAT-AATTGAATTCACTTTCTAAACG
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGC-TGAATTGAATTCACTTTCTAAACG
*
14666618 TGAAGTTTTTGGACCTGTAGTCCAAAAACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
130 TGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTAT
14666683 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
195 TTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGA
* *
14666748 TTTTCACAAAGGCTTGGCATTCATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
260 TTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTT
14666813 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
325 TAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACAT
14666878 CCTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAAT
390 CCTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAAT
14666943 GTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
455 GTAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCT
14667008 AAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
520 AAACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATG
14667073 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
585 AGTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCAC
*
14667138 AAGGATTTTCACAAAGGCCTGGCATTCATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
650 AAGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATC
14667203 ACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
715 ACGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGT
*
14667268 TACATCGTATT
780 TACATCCTATT
*
14667279 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAGTGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
* * *
14667344 ATAGAAAAGATTGGAAAAAATGAAAAGATGCAATTCAAGCTAAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14667409 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAATGTGTAAAGCCAGTAGGATATAAATAAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
14667474 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* *
14667539 TTTCACAAAGGTCTGGCATTGATCATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14667604 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
* *
14667669 CTATTTATTGCTATAGAAATAATAATAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
*
14667734 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
* *
14667799 AACGTGAAGTTTTTGGACCTGTAGTCCAAGCACCTAAAGGTGTAGAGCCAGTAGGATATAAATGA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14667864 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
* * *
14667929 AGGATTTTCACAAAGGCCTGGCATTCATTATGAATAGACATATTTTCATTTGGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14667994 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
14668059 ACATCCTATT
781 ACATCCTATT
* *
14668069 TATTGCTATAGAAATAATAATAGAAAATGAGGATCCCGAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14668134 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCAGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
*
14668199 GAAGTTTTTGGACCTGTAGTCCAAGCACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14668264 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAA
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * *
14668329 TTTCACAAAGGCCTGACATTGATTATGAATAGACATATTTTTCTGTGGTGGATGCAATCATGTTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
14668394 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
* *
14668459 CTATTTATTGTTATAGAAGT-A-AAAA-AAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
391 CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
14668521 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
456 TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
*
14668586 AACGTGAAGTTTTTGGACCTATAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
521 AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
14668651 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
586 GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
*
14668716 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATGTGGTGGATGCAATCA
651 AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
14668781 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
716 CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
*
14668846 ACATCGTATT
781 ACATCCTATT
*
14668856 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTAAGTCTAAATCTATTGAGGAATGTAAAA
1 TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
*
14668921 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCTAGCTGAATTGAATTCACTTTCTAAACGT
66 ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
* *
14668986 GAACTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAATAGGATATAAATGAGTATT
131 GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
*
14669051 TGTATAAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
196 TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
* * * *
14669116 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCATTTGGTGGATGTAATCACGCTT
261 TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
* * *
14669181 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGTCATACATCTAATGGATGTTGTTACGTC
326 AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
14669246 CTATTTAT
391 CTATTTAT
14669254 ATGGTACACT
Statistics
Matches: 14904, Mismatches: 362, Indels: 159
0.97 0.02 0.01
Matches are distributed among these distances:
781 110 0.01
782 376 0.03
783 941 0.06
784 1424 0.10
785 1662 0.11
786 1651 0.11
787 3295 0.22
788 2261 0.15
789 856 0.06
790 1832 0.12
791 493 0.03
792 3 0.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (790 bp):
TATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATGTAAAA
ATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTAAACGT
GAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGAGTATT
TGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACAAGGAT
TTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCACGTTT
AGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTTACATC
CTATTTATTGCTATAGAAATAATAAAAGAAAATGAGGATCCTGAGTCTAAATCTATTGAGGAATG
TAAAAATAGAAAAGATTGGCAAAAATGGAAAGATGCAATTCAAGCTGAATTGAATTCACTTTCTA
AACGTGAAGTTTTTGGACCTGTAGTCCAAACACCTAAAGGTGTAAAGCCAGTAGGATATAAATGA
GTATTTGTATGAAAATGAAATGAAATTGATGAAGTCGTAAGATATAAAGCTCGATTTGTAGCACA
AGGATTTTCACAAAGGCCTGGCATTGATTATGAATAGACATATTTTCCTGTGGTGGATGCAATCA
CGTTTAGATATCTTATTAGTATGGCAGTACGTAAAAAGCTTGACATGCATCTAATGGATGTTGTT
ACATCCTATT
Found at i:14671077 original size:21 final size:24
Alignment explanation
Indices: 14671051--14671093 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
14671041 ATAATTTCAC
14671051 TATTTTA-AT-AA-AAAAAATACT
1 TATTTTACATCAATAAAAAATACT
14671072 TATTTTACATCAATAAAAAATA
1 TATTTTACATCAATAAAAAATA
14671094 ATTACAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 2 0.11
23 2 0.11
24 8 0.42
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (24 bp):
TATTTTACATCAATAAAAAATACT
Found at i:14677686 original size:25 final size:25
Alignment explanation
Indices: 14677652--14677701 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
14677642 GAAGCCCAAG
*
14677652 ATACTTTTTTGGGTTTGATGTATAA
1 ATACTTTTTTGGGTCTGATGTATAA
14677677 ATACTTTTTTGGGTCTGATGTATAA
1 ATACTTTTTTGGGTCTGATGTATAA
14677702 TGTACATTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.06, G:0.20, T:0.50
Consensus pattern (25 bp):
ATACTTTTTTGGGTCTGATGTATAA
Found at i:14684804 original size:40 final size:40
Alignment explanation
Indices: 14684760--14684847 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
14684750 TGGCATGTCC
* * *
14684760 ACATTACTAGTAACTTCTTTGCATTACTAGCAATTTATCT
1 ACATTACTAGTAACTTATCTGCACTACTAGCAATTTATCT
* * *
14684800 ACATTACTAGTAGCTTATCTGCACTACTGGCAGTTTATCT
1 ACATTACTAGTAACTTATCTGCACTACTAGCAATTTATCT
*
14684840 GCATTACT
1 ACATTACT
14684848 GGTGACTTGA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.40
Consensus pattern (40 bp):
ACATTACTAGTAACTTATCTGCACTACTAGCAATTTATCT
Found at i:14684849 original size:20 final size:20
Alignment explanation
Indices: 14684779--14684847 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 20
14684769 GTAACTTCTT
*
14684779 TGCATTACTAGCAATTTATC
1 TGCATTACTAGCAGTTTATC
* * *
14684799 TACATTACTAGTAGCTTATC
1 TGCATTACTAGCAGTTTATC
* *
14684819 TGCACTACTGGCAGTTTATC
1 TGCATTACTAGCAGTTTATC
14684839 TGCATTACT
1 TGCATTACT
14684848 GGTGACTTGA
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.26, C:0.22, G:0.13, T:0.39
Consensus pattern (20 bp):
TGCATTACTAGCAGTTTATC
Found at i:14684896 original size:20 final size:20
Alignment explanation
Indices: 14684837--14684898 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
14684827 TGGCAGTTTA
14684837 TCTGCATTACTGGTGACTTG
1 TCTGCATTACTGGTGACTTG
* ** *
14684857 ACCACATTACTAGT-AGCTTG
1 TCTGCATTACTGGTGA-CTTG
*
14684877 TTTGCATTACTGGTGACTTG
1 TCTGCATTACTGGTGACTTG
14684897 TC
1 TC
14684899 CACAAATAAG
Statistics
Matches: 30, Mismatches: 10, Indels: 4
0.68 0.23 0.09
Matches are distributed among these distances:
19 1 0.03
20 28 0.93
21 1 0.03
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.39
Consensus pattern (20 bp):
TCTGCATTACTGGTGACTTG
Found at i:14689242 original size:44 final size:46
Alignment explanation
Indices: 14689193--14689290 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 46
14689183 CATTTCCATT
*
14689193 TCCATTTT-GAGAAAACCATATTCATTT-TCAAAT-GATTCAATTTC
1 TCCATTTTGGAGAAAACCATAATCATTTCT-AAATGGATTCAATTTC
* * * *
14689237 TCCATTTTGGAGAAAGCCATAATCATTTCTGAATGGTTTCCATTTC
1 TCCATTTTGGAGAAAACCATAATCATTTCTAAATGGATTCAATTTC
14689283 TCCATTTT
1 TCCATTTT
14689291 TATTCATTCT
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
44 8 0.17
45 20 0.43
46 18 0.39
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (46 bp):
TCCATTTTGGAGAAAACCATAATCATTTCTAAATGGATTCAATTTC
Found at i:14693461 original size:6 final size:6
Alignment explanation
Indices: 14693452--14693480 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
14693442 AAATAAAATT
14693452 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
1 CTAAAA CTAAAA CTAAAA CTAAAA CTAAA
14693481 GTCTAAAAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.66, C:0.17, G:0.00, T:0.17
Consensus pattern (6 bp):
CTAAAA
Found at i:14693534 original size:9 final size:9
Alignment explanation
Indices: 14693520--14693549 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
14693510 GTAGTGATTC
*
14693520 AATTCGGTT
1 AATTCGGGT
14693529 AATTCGGGT
1 AATTCGGGT
14693538 AATTCGGGT
1 AATTCGGGT
14693547 AAT
1 AAT
14693550 ATATAATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.37
Consensus pattern (9 bp):
AATTCGGGT
Found at i:14708619 original size:8 final size:9
Alignment explanation
Indices: 14708601--14708633 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
14708591 ATTAAAGAAA
14708601 AAATAAAAT
1 AAATAAAAT
14708610 AAAT-AAAT
1 AAATAAAAT
14708618 -AATAAAAT
1 AAATAAAAT
14708626 AAATAAAA
1 AAATAAAA
14708634 ACAATGATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
7 3 0.14
8 8 0.36
9 11 0.50
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (9 bp):
AAATAAAAT
Found at i:14708621 original size:16 final size:16
Alignment explanation
Indices: 14708602--14708632 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14708592 TTAAAGAAAA
14708602 AATAAAATAAATAAAT
1 AATAAAATAAATAAAT
14708618 AATAAAATAAATAAA
1 AATAAAATAAATAAA
14708633 AACAATGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (16 bp):
AATAAAATAAATAAAT
Found at i:14708643 original size:21 final size:20
Alignment explanation
Indices: 14708600--14708649 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 20
14708590 AATTAAAGAA
*
14708600 AAAATAAAATAAATAAATAAT
1 AAAAT-AAATAAAAAAATAAT
*
14708621 AAAATAAATAAAAACAATGAT
1 AAAATAAATAAAAA-AATAAT
14708642 AACAATAA
1 AA-AATAA
14708650 TAGTTCTAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 8 0.32
21 12 0.48
22 5 0.20
ACGTcount: A:0.74, C:0.04, G:0.02, T:0.20
Consensus pattern (20 bp):
AAAATAAATAAAAAAATAAT
Found at i:14711640 original size:16 final size:16
Alignment explanation
Indices: 14711603--14711644 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14711593 TTAATCATAT
*
14711603 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
14711619 TT-AAATATATTATAA
1 TTAAAATATATTATAA
14711634 TTAAAATATAT
1 TTAAAATATAT
14711645 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:14711651 original size:14 final size:15
Alignment explanation
Indices: 14711612--14711653 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14711602 TTTAAACATA
*
14711612 ATTATTATTAAATAT
1 ATTATAATTAAATAT
14711627 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
14711641 A-TATAATTTAATA
1 ATTATAATTAAATA
14711654 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:14711771 original size:14 final size:15
Alignment explanation
Indices: 14711722--14711773 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14711712 ATAAAATATA
14711722 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14711737 TATTAAATATATTAT
1 AATTAAATATATTAT
14711752 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14711765 AATTTAATA
1 AATTAAATA
14711774 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14711891 original size:14 final size:15
Alignment explanation
Indices: 14711842--14711893 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14711832 ATAAAATATA
14711842 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14711857 TATTAAATATATTAT
1 AATTAAATATATTAT
14711872 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14711885 AATTTAATA
1 AATTAAATA
14711894 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14712011 original size:14 final size:15
Alignment explanation
Indices: 14711962--14712013 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14711952 ATAAAAGATA
14711962 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14711977 TATTAAATATATTAT
1 AATTAAATATATTAT
14711992 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14712005 AATTTAATA
1 AATTAAATA
14712014 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14712131 original size:14 final size:15
Alignment explanation
Indices: 14712082--14712133 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
14712072 ATAAAAGATA
14712082 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
14712097 TATTAAATATATTAT
1 AATTAAATATATTAT
14712112 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
14712125 AATTTAATA
1 AATTAAATA
14712134 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:14712269 original size:120 final size:120
Alignment explanation
Indices: 14711606--14712258 Score: 1182
Period size: 120 Copynumber: 5.4 Consensus size: 120
14711596 ATCATATTTA
*
14711606 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAACTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
14711671 TATTATTATATGAATTTACTCATATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
14711726 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14711791 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
14711846 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
* *
14711911 TTTTATTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
14711966 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14712031 TATTCTTATATGAATTTACTCAAATCATAACATATGATACTATAAAAGATAAATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
14712086 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
*
14712151 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
* * *
14712206 GAA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 -AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
14712259 TAAAATAATT
Statistics
Matches: 518, Mismatches: 14, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
120 516 1.00
121 2 0.00
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.42
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATT
Found at i:14712329 original size:26 final size:28
Alignment explanation
Indices: 14712299--14712359 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
14712289 TATGAATTTG
*
14712299 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
14712325 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
14712353 TAAAATT
1 TATAATT
14712360 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:14712369 original size:91 final size:90
Alignment explanation
Indices: 14712274--14712481 Score: 299
Period size: 91 Copynumber: 2.3 Consensus size: 90
14712264 TAATTATAAC
* * * * *
14712274 TAATAAATTATATTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
14712339 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
*
14712365 TAATAAATTTTCTTATATGAATTTATACAGTTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
14712430 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
*
14712456 TCATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
14712482 CTAAAATCAA
Statistics
Matches: 105, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
91 84 0.80
92 21 0.20
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:14712456 original size:47 final size:47
Alignment explanation
Indices: 14712318--14712456 Score: 128
Period size: 47 Copynumber: 3.0 Consensus size: 47
14712308 AAATAATTAT
* * *
14712318 TATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGA
1 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
* * * * **
14712365 TAATAAAT-T--TTCTTAT-ATGAATTTATACAGTT--TAAAATAATTAA
1 TATTAAATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAA
14712409 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
1 TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
14712456 T
1 T
14712457 CATAAAATGT
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 22 0.32
ACGTcount: A:0.47, C:0.05, G:0.03, T:0.45
Consensus pattern (47 bp):
TATTAAATATAATTTAATAATGATATATAATTTCATAAAATTCTTAA
Found at i:14713851 original size:7 final size:7
Alignment explanation
Indices: 14713839--14713888 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
14713829 AAACTATAAC
14713839 TTAAAAT
1 TTAAAAT
14713846 TTAAAAT
1 TTAAAAT
14713853 TTAAAAT
1 TTAAAAT
* *
14713860 TATAACAC
1 T-TAAAAT
**
14713868 AAAAAAT
1 TTAAAAT
14713875 TTAAAAT
1 TTAAAAT
14713882 TTAAAAT
1 TTAAAAT
14713889 GAGAAGAAAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
7 30 0.88
8 4 0.12
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (7 bp):
TTAAAAT
Found at i:14713955 original size:11 final size:11
Alignment explanation
Indices: 14713941--14713967 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
14713931 AAAAATCAAT
14713941 ACAAAAGTTTC
1 ACAAAAGTTTC
14713952 ACAAAAGTTTC
1 ACAAAAGTTTC
14713963 ACAAA
1 ACAAA
14713968 CTAATTTCTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.19, G:0.07, T:0.22
Consensus pattern (11 bp):
ACAAAAGTTTC
Found at i:14716801 original size:10 final size:10
Alignment explanation
Indices: 14716786--14716818 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
14716776 TTTTTTTTAC
14716786 AATTTCTTTG
1 AATTTCTTTG
14716796 AATTTCTTTG
1 AATTTCTTTG
14716806 AATTT-TTT-
1 AATTTCTTTG
14716814 AATTT
1 AATTT
14716819 AAGTTCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 5 0.22
9 3 0.13
10 15 0.65
ACGTcount: A:0.24, C:0.06, G:0.06, T:0.64
Consensus pattern (10 bp):
AATTTCTTTG
Found at i:14717368 original size:23 final size:23
Alignment explanation
Indices: 14717329--14717391 Score: 94
Period size: 23 Copynumber: 2.7 Consensus size: 23
14717319 TGTACTAACT
14717329 AACAAATCAAGAACAATTTCCAG
1 AACAAATCAAGAACAATTTCCAG
14717352 CAGAC-AATCAA-AACAATTTCCAG
1 -A-ACAAATCAAGAACAATTTCCAG
14717375 AACAAATCAAGAACAAT
1 AACAAATCAAGAACAAT
14717392 ATCAAAACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
21 2 0.06
22 7 0.19
23 18 0.50
24 7 0.19
25 2 0.06
ACGTcount: A:0.54, C:0.22, G:0.08, T:0.16
Consensus pattern (23 bp):
AACAAATCAAGAACAATTTCCAG
Found at i:14721952 original size:43 final size:43
Alignment explanation
Indices: 14721896--14722056 Score: 161
Period size: 43 Copynumber: 3.8 Consensus size: 43
14721886 ATGCCAACGC
* * *
14721896 CCCAGACGTGGTCTTACATGTAATCACATATCGATGCCACTGT
1 CCCAGACGTGGTCTTACACGAAAACACATATCGATGCCACTGT
* * *
14721939 CCCAGACAG-GGTCTTACAC-AAATCAAATA-CGATGCCAATGT
1 CCCAGAC-GTGGTCTTACACGAAAACACATATCGATGCCACTGT
* ** * *
14721980 CCTAGATATGGTCTTACACGTAAACACA-AGTTGATGCCAAC-GT
1 CCCAGACGTGGTCTTACACGAAAACACATA-TCGATGCC-ACTGT
14722023 CCCAGACGTGGTCTTACACGAAAACACATATCGA
1 CCCAGACGTGGTCTTACACGAAAACACATATCGA
14722057 AATCCTATGT
Statistics
Matches: 94, Mismatches: 17, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
41 27 0.29
42 13 0.14
43 51 0.54
44 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (43 bp):
CCCAGACGTGGTCTTACACGAAAACACATATCGATGCCACTGT
Found at i:14731845 original size:9 final size:9
Alignment explanation
Indices: 14731831--14731860 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
14731821 GAGTGTCCAA
14731831 TAAAAATTT
1 TAAAAATTT
14731840 TAAAAATTT
1 TAAAAATTT
14731849 TAAAAATTT
1 TAAAAATTT
14731858 TAA
1 TAA
14731861 GAGTTTAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (9 bp):
TAAAAATTT
Found at i:14734361 original size:24 final size:23
Alignment explanation
Indices: 14734334--14734390 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 23
14734324 CATTTAATAA
*
14734334 AATAAAAGTTGTTTTTA-ATATTTT
1 AATAAAA-TTATTTTTATAT-TTTT
14734358 AATAGTAAATTATTTTTATATTTTT
1 AATA--AAATTATTTTTATATTTTT
14734383 AATAAAAT
1 AATAAAAT
14734391 AGAAGTTCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
23 4 0.14
24 4 0.14
25 16 0.55
26 5 0.17
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (23 bp):
AATAAAATTATTTTTATATTTTT
Found at i:14735825 original size:17 final size:17
Alignment explanation
Indices: 14735803--14735836 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
14735793 GGATTTAACC
14735803 ATCCTTACTGAAAAACT
1 ATCCTTACTGAAAAACT
14735820 ATCCTTACTGAAAAACT
1 ATCCTTACTGAAAAACT
14735837 CCTTACCAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.29
Consensus pattern (17 bp):
ATCCTTACTGAAAAACT
Found at i:14735841 original size:15 final size:16
Alignment explanation
Indices: 14735802--14735842 Score: 66
Period size: 17 Copynumber: 2.6 Consensus size: 16
14735792 TGGATTTAAC
14735802 CATCCTTACTGAAAAA
1 CATCCTTACTGAAAAA
14735818 CTATCCTTACTGAAAAA
1 C-ATCCTTACTGAAAAA
14735835 C-TCCTTAC
1 CATCCTTAC
14735843 CAACTTCCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.29
16 1 0.04
17 16 0.67
ACGTcount: A:0.37, C:0.29, G:0.05, T:0.29
Consensus pattern (16 bp):
CATCCTTACTGAAAAA
Found at i:14737221 original size:33 final size:33
Alignment explanation
Indices: 14737100--14737231 Score: 147
Period size: 34 Copynumber: 3.9 Consensus size: 33
14737090 CTAAACACAA
* * *
14737100 AATTATTTAAAAAAAACTAAACCCCAATTTAATT
1 AATT-TTTTAAAAACACTAAACCCTAATTTAATT
* ***
14737134 TATTTTCTTAAAAAGTGTAAACCCTAATTTAATT
1 AATTTT-TTAAAAACACTAAACCCTAATTTAATT
* * *
14737168 AATTTATTTAAAACCCCTAAAACCTAATTTAATT
1 AATTT-TTTAAAAACACTAAACCCTAATTTAATT
14737202 AATTTTTTAAAAACACTAAACCCTAATTTA
1 AATTTTTTAAAAACACTAAACCCTAATTTA
14737232 TTTTTTAAAA
Statistics
Matches: 81, Mismatches: 15, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
33 24 0.30
34 56 0.69
35 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (33 bp):
AATTTTTTAAAAACACTAAACCCTAATTTAATT
Found at i:14755725 original size:49 final size:49
Alignment explanation
Indices: 14755647--14755740 Score: 136
Period size: 49 Copynumber: 1.9 Consensus size: 49
14755637 AGGAAAGGGA
* *
14755647 ACCAAAGTGAAAACCCGCAAAGGGCGCTTTGATTCCTAAA-AAAAAGAAG
1 ACCAAAGTGAAAACCCGCAAAGAGCGCTTTGAGT-CTAAACAAAAAGAAG
* *
14755696 ACCAAAGTGAAAACCTGCAAAGAGTGCTTTGAGTCTAAACAAAAA
1 ACCAAAGTGAAAACCCGCAAAGAGCGCTTTGAGTCTAAACAAAAA
14755741 ATAATAATAA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
48 5 0.12
49 35 0.88
ACGTcount: A:0.46, C:0.19, G:0.19, T:0.16
Consensus pattern (49 bp):
ACCAAAGTGAAAACCCGCAAAGAGCGCTTTGAGTCTAAACAAAAAGAAG
Found at i:14757379 original size:44 final size:45
Alignment explanation
Indices: 14757113--14757394 Score: 144
Period size: 44 Copynumber: 6.4 Consensus size: 45
14757103 CGAATAATCC
* * *
14757113 TATCTCCCTGAAGTTTCAGTGGAGCG-GATTAAAATAAAAGATTT
1 TATCTCCCTGAAGTTGCAGTGGAGCGAGATTAAAATAGAAGATCT
* * * * ***
14757157 TATCTCTCTGAAGTGGCAGTAGAG-TAGA-TCGCATCAG--G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGAGATTAAAAT-AGAAGATCT
* * ** *
14757198 TATTTCCCTGAAGTTGCAGCGGAGC-AGACCGAAGAATTA-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGAGA-TTAA-AA-TAGAAGATCT
* * * * *
14757244 TATCTCCCT-AAGTAGTAGTGGAGC-AGATAAAAAATGGTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGAGAT-TAAAATAGAAGATCT
** * ** *
14757288 TATCTCCCT-AAGCAGTAGTGGAGC-AGATTAAAGCCA-ATA-ATCA
1 TATCTCCCTGAAGTTGCAGTGGAGCGAGATTAAA-ATAGA-AGATCT
14757331 TATCTCCCTGAAGTTGCAGTGGAGCGA-ATTAAAATAGAAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCGAGATTAAAATAGAAGATCT
* *
14757375 TATCTCTCTAAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGT
14757395 AGAGTAGATC
Statistics
Matches: 178, Mismatches: 42, Indels: 36
0.70 0.16 0.14
Matches are distributed among these distances:
41 24 0.13
42 1 0.01
43 21 0.12
44 101 0.57
45 20 0.11
46 11 0.06
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (45 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGAGATTAAAATAGAAGATCT
Found at i:14757412 original size:218 final size:218
Alignment explanation
Indices: 14757045--14757489 Score: 728
Period size: 218 Copynumber: 2.0 Consensus size: 218
14757035 AGGTTACAGC
** * *
14757045 GGAGCAGATCGAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTGAAGCGAATAA
1 GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAATAA
* * * * *
14757110 TCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAATAAAAGATTTTATCTCTCTGAAGTGGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
* * *
14757175 GTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAG
131 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
*
14757240 ATCTTATCTCCCTAAGTAGTAGT
196 ATCTTATCTCCCTAAGCAGTAGT
* *
14757263 GGAGCAGATAAAAAATGGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAATAA
1 GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAATAA
* *
14757328 TCATATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAATAGAAGATCTTATCTCTCTAAAGTTGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
*
14757393 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTATAG
131 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
14757458 ATCTTATCTCCCTAAGCAGTAGT
196 ATCTTATCTCCCTAAGCAGTAGT
14757481 GGAGCAGAT
1 GGAGCAGAT
14757490 CAAAGACCCC
Statistics
Matches: 209, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
218 209 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (218 bp):
GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATTAAAGCCAATAA
TCATATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
ATCTTATCTCCCTAAGCAGTAGT
Found at i:14757552 original size:90 final size:90
Alignment explanation
Indices: 14757450--14757628 Score: 277
Period size: 90 Copynumber: 2.0 Consensus size: 90
14757440 CAGACCGAAG
* * *
14757450 AATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTTTCCCTG
1 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
14757515 AGCAGCAATGAAGTAGGTTGAAAAA
66 AGCAGCAATGAAGTAGGTTGAAAAA
* * *
14757540 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCGAAGACCCTAGCCTTGTCTCGCTG
1 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
* * *
14757605 AGCAGTAGTGGAGTAGGTTGAAAA
66 AGCAGCAATGAAGTAGGTTGAAAA
14757629 TAGCAGATCT
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 80 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.25
Consensus pattern (90 bp):
AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
AGCAGCAATGAAGTAGGTTGAAAAA
Found at i:14758197 original size:44 final size:44
Alignment explanation
Indices: 14758149--14758525 Score: 180
Period size: 44 Copynumber: 8.7 Consensus size: 44
14758139 CGAATAATCC
* *
14758149 TATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAATAAAAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAAAGATCT
* * * * *** * *
14758193 TATCTCTCTGAAGTGGCAGTAGAGTAGA-TCGCAT--CAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAAAGATCT
* * ** * *
14758234 TATTTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AATAAAAGATCT
* * * ***
14758280 TATCTCCCT-AAGTAGTAGTGGAGCAGATAAAAAATGGTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-TAAAATAAAAGATCT
** * ** ** *
14758324 TATCTCCCT-AAGAAGTAGTGGAGCAGATTAAAGCCAGTA-ATCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA-ATAAAAGATCT
* *
14758367 TATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAAAGATCT
* * * * * * * *
14758411 TATCTCTCTAAAGTTGCAGTAGAGTAGA-TCACAT--CAGGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAAAGATCT
* * ** * *
14758452 TATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTATAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTAA-AATAAAAGATCT
** *
14758498 TATCTCCCT-AAGCAGTAGTGGAGCAGAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT
14758526 CAAAGACCCC
Statistics
Matches: 247, Mismatches: 72, Indels: 28
0.71 0.21 0.08
Matches are distributed among these distances:
41 54 0.22
43 24 0.10
44 109 0.44
45 32 0.13
46 28 0.11
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAAAAGATCT
Found at i:14758462 original size:218 final size:218
Alignment explanation
Indices: 14758081--14758525 Score: 719
Period size: 218 Copynumber: 2.0 Consensus size: 218
14758071 GGGTTACAGC
** * * * *
14758081 GGAGCAGATCGAAAATGGCAAATCTTATCTCCTTAAGCAGTAGTGGAGCAGATTGAAGCGAATAA
1 GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTAAAGCCAATAA
* * *
14758146 TCCTATCTCCCTGAAGTTTCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
* * *
14758211 GTAGAGTAGATCGCATCAGGTCTTATTTCCCTGAAGTTGCAGCGGAGCAGACCGAAGAATTACAG
131 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
*
14758276 ATCTTATCTCCCTAAGTAGTAGT
196 ATCTTATCTCCCTAAGCAGTAGT
* * *
14758299 GGAGCAGATAAAAAATGGTAGATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTAAAGCCAGTAA
1 GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTAAAGCCAATAA
* *
14758364 TCATATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTTGCA
66 TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
*
14758429 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTATAG
131 GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
14758494 ATCTTATCTCCCTAAGCAGTAGT
196 ATCTTATCTCCCTAAGCAGTAGT
14758517 GGAGCAGAT
1 GGAGCAGAT
14758526 CAAAGACCCC
Statistics
Matches: 208, Mismatches: 19, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
218 208 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (218 bp):
GGAGCAGATAAAAAATGGCAAATCTTATCTCCCTAAGAAGTAGTGGAGCAGATTAAAGCCAATAA
TCATATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTAAAGTGGCA
GTAGAGTAGATCACATCAGGTCTTATCTCCCTGAAGCTGCAGCGGAGCAGACCGAAGAATTACAG
ATCTTATCTCCCTAAGCAGTAGT
Found at i:14758586 original size:88 final size:88
Alignment explanation
Indices: 14758486--14758662 Score: 273
Period size: 88 Copynumber: 2.0 Consensus size: 88
14758476 CAGACCGAAG
* * *
14758486 AATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTTTCCCTG
1 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
14758551 AGCAACAGTGAAGTAGGTTGAAA
66 AGCAACAGTGAAGTAGGTTGAAA
* * *
14758574 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCGAAGACCCTAGCCTTGTCTCGCTG
1 AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
** *
14758639 AGCAGTAGTGGAGTAGGTTGAAA
66 AGCAACAGTGAAGTAGGTTGAAA
14758662 A
1 A
14758663 TAGCAGATCT
Statistics
Matches: 80, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 80 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.25
Consensus pattern (88 bp):
AATTACAGATCTTATCTCCATAAGCAGTAGTGGAGCAGATCAAAGACCCCAGCCTTGTCTCCCTG
AGCAACAGTGAAGTAGGTTGAAA
Found at i:14759250 original size:17 final size:17
Alignment explanation
Indices: 14759228--14759267 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
14759218 AAGAAAAAAC
14759228 AAATAAATA-AAAATAAA
1 AAATAAA-ACAAAATAAA
*
14759245 AAATAAAACCAAATAAA
1 AAATAAAACAAAATAAA
14759262 AAATAA
1 AAATAA
14759268 TAGTGAAGGC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 1 0.05
17 20 0.95
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (17 bp):
AAATAAAACAAAATAAA
Found at i:14760976 original size:5 final size:5
Alignment explanation
Indices: 14760966--14761009 Score: 56
Period size: 5 Copynumber: 9.2 Consensus size: 5
14760956 AGTTATTCAC
* *
14760966 TTTTA TTTTA TTTCA TTTTA TTTTA -TTT- TTTTA TTTTT TTTTA T
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA TTTTA T
14761010 AAATCTTTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
4 6 0.18
5 27 0.82
ACGTcount: A:0.16, C:0.02, G:0.00, T:0.82
Consensus pattern (5 bp):
TTTTA
Found at i:14760976 original size:15 final size:14
Alignment explanation
Indices: 14760958--14761002 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
14760948 AATTTTTAAG
14760958 TTATTCACTTTTATT
1 TTATTCA-TTTTATT
14760973 TTATTTCATTTTATT
1 TTA-TTCATTTTATT
*
14760988 TTATT-TTTTTATT
1 TTATTCATTTTATT
14761001 TT
1 TT
14761003 TTTTTATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 9 0.32
14 2 0.07
15 13 0.46
16 4 0.14
ACGTcount: A:0.18, C:0.07, G:0.00, T:0.76
Consensus pattern (14 bp):
TTATTCATTTTATT
Found at i:14762350 original size:7 final size:7
Alignment explanation
Indices: 14762340--14762369 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
14762330 TTAATAAATA
14762340 ATATTAT
1 ATATTAT
14762347 ATATTAT
1 ATATTAT
14762354 ATATTAT
1 ATATTAT
14762361 ATATTAT
1 ATATTAT
14762368 AT
1 AT
14762370 GTATTAGTCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (7 bp):
ATATTAT
Found at i:14776443 original size:21 final size:20
Alignment explanation
Indices: 14776407--14776446 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 20
14776397 GTATATGGTC
14776407 GATTAATTAGTAATATATAT
1 GATTAATTAGTAATATATAT
14776427 GATTATATTA-TACATATATA
1 GATTA-ATTAGTA-ATATATA
14776447 GCATTGTTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (20 bp):
GATTAATTAGTAATATATAT
Done.