Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 53 of 173
Found at i:14806263 original size:31 final size:31
Alignment explanation
Indices: 14806228--14806354 Score: 80
Period size: 31 Copynumber: 4.1 Consensus size: 31
14806218 ACATAGTACT
14806228 TGATAAAATATAAACATCAACACATTATGCC
1 TGATAAAATATAAACATCAACACATTATGCC
* * * * *
14806259 TGATACAATATGAACACTGATACATAGTAT--C
1 TGATAAAATATAAACA-TCA-ACACATTATGCC
* * * * *
14806290 TGATAAAATATAATCACCAATACA-TAGTACT
1 TGATAAAATATAAACATCAACACATTA-TGCC
*** *
14806321 TGATAAAATATATTTATCAAAACATTATGCC
1 TGATAAAATATAAACATCAACACATTATGCC
14806352 TGA
1 TGA
14806355 GACAATATGA
Statistics
Matches: 71, Mismatches: 19, Indels: 12
0.70 0.19 0.12
Matches are distributed among these distances:
28 2 0.03
29 4 0.06
30 1 0.01
31 53 0.75
32 4 0.06
33 7 0.10
ACGTcount: A:0.46, C:0.16, G:0.09, T:0.30
Consensus pattern (31 bp):
TGATAAAATATAAACATCAACACATTATGCC
Found at i:14806325 original size:62 final size:62
Alignment explanation
Indices: 14806209--14806331 Score: 151
Period size: 62 Copynumber: 2.0 Consensus size: 62
14806199 TAAGATAACA
* * * *
14806209 AACACTGGTACATAGTACTTGATAAAATATAAACATCAACACATTATGCCTGATACAATATG
1 AACACTGATACATAGTACTTGATAAAATATAAACACCAACACATTATACCTGATAAAATATG
* * *
14806271 AACACTGATACATAGTA-TCTGATAAAATATAATCACCAATACA-TAGTACTTGATAAAATAT
1 AACACTGATACATAGTACT-TGATAAAATATAAACACCAACACATTA-TACCTGATAAAATAT
14806332 ATTTATCAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
61 3 0.06
62 49 0.94
ACGTcount: A:0.46, C:0.16, G:0.10, T:0.28
Consensus pattern (62 bp):
AACACTGATACATAGTACTTGATAAAATATAAACACCAACACATTATACCTGATAAAATATG
Found at i:14806376 original size:93 final size:93
Alignment explanation
Indices: 14806217--14806387 Score: 261
Period size: 93 Copynumber: 1.8 Consensus size: 93
14806207 CAAACACTGG
* * *
14806217 TACATAGTACTTGATAAAATATAAACATCAACACATTATGCCTGATACAATATGAACACTGATAC
1 TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
*
14806282 ATAGTATCTGATAAAATATAATCACCAA
66 ATAGTACCTGATAAAATATAATCACCAA
*** * *
14806310 TACATAGTACTTGATAAAATATATTTATCAAAACATTATGCCTGAGACAATATGAATACCGGTAC
1 TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
14806375 ATAGTACCTGATA
66 ATAGTACCTGATA
14806388 TTTCAAAACC
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 69 1.00
ACGTcount: A:0.44, C:0.16, G:0.11, T:0.29
Consensus pattern (93 bp):
TACATAGTACTTGATAAAATATAAACATCAAAACATTATGCCTGAGACAATATGAACACCGATAC
ATAGTACCTGATAAAATATAATCACCAA
Found at i:14806608 original size:2 final size:2
Alignment explanation
Indices: 14806601--14806648 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
14806591 CCAAGCCAAT
14806601 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
14806643 CA CA CA
1 CA CA CA
14806649 ATAAAACATA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:14808663 original size:348 final size:348
Alignment explanation
Indices: 14808021--14808730 Score: 1341
Period size: 348 Copynumber: 2.0 Consensus size: 348
14808011 GTTAGTCCAG
* *
14808021 ACAACCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACGTAAGATAAATTATCT
1 ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACATAAGATAAATTATCT
14808086 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTAATTAAAC
66 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTAATTAAAC
14808151 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
131 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
*
14808216 GCAGCTTAATATTAGTTAAACATTAAGTAACCGGTGAACCAATATTTGTTTATTCATTTTGCTTT
196 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGCTTT
*
14808281 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAATC
261 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
*
14808346 TAATATGTTTTGTTCTAAAAATT
326 TAATATGTTCTGTTCTAAAAATT
*
14808369 ACAAGCACATGTATGTTTTTTATCTTTTGGAAGTCATTCGCTTTGATACATAAGATAAATTATCT
1 ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACATAAGATAAATTATCT
*
14808434 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTGATTAAAC
66 CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTAATTAAAC
14808499 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
131 TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
*
14808564 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGTTTT
196 GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGCTTT
14808629 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
261 GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
14808694 TAATATGTTCTGTTCTAAAAATT
326 TAATATGTTCTGTTCTAAAAATT
14808717 ACAAGCACAT-TATG
1 ACAAGCACATGTATG
14808731 AAGAAAAACT
Statistics
Matches: 354, Mismatches: 8, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
347 4 0.01
348 350 0.99
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.38
Consensus pattern (348 bp):
ACAAGCACATGTATGCTTTTTATCTTTTGGAAGTCATTCGCTTTGATACATAAGATAAATTATCT
CCCCAATTTGGACTTGATAGGTGACATAATAGTCTTTTAATCAATTTGCTTAATTCTAATTAAAC
TATGAACTATTTAGATTACCTACTAATATAAGTTGACTTCTTGTATTATGATCCAACCACATAAT
GCAGCTTAATATTAGTTAAACATTAAGTAACCAGTGAACCAATATTTGTTTATTCATTTTGCTTT
GCGTACAAAAACCATTAAGGACAAATACAAACGATATTAATGAGAATGATGAAATTTTATTAAAC
TAATATGTTCTGTTCTAAAAATT
Found at i:14811078 original size:53 final size:52
Alignment explanation
Indices: 14810991--14811096 Score: 140
Period size: 53 Copynumber: 2.0 Consensus size: 52
14810981 GGAAAGTCCA
* * * * * *
14810991 TGAATTTTATAAAGTTCTATTTTTGAACTGTCTATGCAAAGTATGTGCGTAC
1 TGAATTTTATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
*
14811043 TGAATTTCTGTAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
1 TGAATTT-TATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
14811096 T
1 T
14811097 TGTAAACTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
52 7 0.15
53 39 0.85
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (52 bp):
TGAATTTTATAAAGTTCTATGTATAAACTATCTATGCAAAATATGTGCATAC
Found at i:14811318 original size:20 final size:18
Alignment explanation
Indices: 14811269--14811305 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
14811259 ATGATTTTTG
14811269 TGCATAAATTATATTATT
1 TGCATAAATTATATTATT
14811287 TGCATAAATTATATTATT
1 TGCATAAATTATATTATT
14811305 T
1 T
14811306 TCATGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (18 bp):
TGCATAAATTATATTATT
Found at i:14813050 original size:68 final size:68
Alignment explanation
Indices: 14812972--14813109 Score: 276
Period size: 68 Copynumber: 2.0 Consensus size: 68
14812962 CTATTTATAC
14812972 ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTTAACTAGCACTGTAACGTATGTGCGGA
1 ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTTAACTAGCACTGTAACGTATGTGCGGA
14813037 CTA
66 CTA
14813040 ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTTAACTAGCACTGTAACGTATGTGCGGA
1 ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTTAACTAGCACTGTAACGTATGTGCGGA
14813105 CTA
66 CTA
14813108 AT
1 AT
14813110 CTTGTGAAAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 70 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (68 bp):
ATAGACTGTGTGTGTTGATTACGTAGAGTACTATATGTTAACTAGCACTGTAACGTATGTGCGGA
CTA
Found at i:14816165 original size:35 final size:34
Alignment explanation
Indices: 14816126--14816234 Score: 119
Period size: 35 Copynumber: 3.1 Consensus size: 34
14816116 GAGTTGTAAC
* * * * *
14816126 TATTATGCGAGCTATAACGATACACGACCTATAAG
1 TATTATGTGAGTTGTAACAATACATGA-CTATAAG
*
14816161 TATTATGTGAGTTGTAACAATACATGAGTCATAAG
1 TATTATGTGAGTTGTAACAATACATGACT-ATAAG
* *
14816196 TATTATGTGAGTTGTAACTATACGTGAGCTATAAG
1 TATTATGTGAGTTGTAACAATACATGA-CTATAAG
14816231 TATT
1 TATT
14816235 GTGCAAGGTT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
34 1 0.02
35 61 0.97
36 1 0.02
ACGTcount: A:0.35, C:0.12, G:0.19, T:0.34
Consensus pattern (34 bp):
TATTATGTGAGTTGTAACAATACATGACTATAAG
Found at i:14816189 original size:70 final size:70
Alignment explanation
Indices: 14816084--14816234 Score: 160
Period size: 70 Copynumber: 2.2 Consensus size: 70
14816074 AACATGCAAA
* * * **
14816084 CTATAAGTATTACGCTAGTTGTAGCGATACGTGAGTTGTAACTATTATGCGAGCTATAACGATAC
1 CTATAAGTATTACGCTAGTTGTAACAATACATGAGTCATAACTATTATGCGAGCTATAACGATAC
14816149 ACGAC
66 ACGAC
* * * * * *
14816154 CTATAAGTATTATG-TGAGTTGTAACAATACATGAGTCATAAGTATTATGTGAGTTGTAACTATA
1 CTATAAGTATTACGCT-AGTTGTAACAATACATGAGTCATAACTATTATGCGAGCTATAACGATA
** *
14816218 CGTGAG
65 CACGAC
14816224 CTATAAGTATT
1 CTATAAGTATT
14816235 GTGCAAGGTT
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
69 1 0.02
70 65 0.98
ACGTcount: A:0.33, C:0.13, G:0.21, T:0.34
Consensus pattern (70 bp):
CTATAAGTATTACGCTAGTTGTAACAATACATGAGTCATAACTATTATGCGAGCTATAACGATAC
ACGAC
Found at i:14817280 original size:23 final size:24
Alignment explanation
Indices: 14817238--14817289 Score: 70
Period size: 23 Copynumber: 2.2 Consensus size: 24
14817228 ATTTTATTTT
* *
14817238 ATTTTCTTCTTATTTTTAGATTAG
1 ATTTTCCTCTTATTTTTAGAATAG
*
14817262 GTTTTCCTCTT-TTTTTAGAATAG
1 ATTTTCCTCTTATTTTTAGAATAG
14817285 ATTTT
1 ATTTT
14817290 ATTTTTTTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.19, C:0.10, G:0.10, T:0.62
Consensus pattern (24 bp):
ATTTTCCTCTTATTTTTAGAATAG
Found at i:14818979 original size:40 final size:40
Alignment explanation
Indices: 14818902--14819088 Score: 141
Period size: 40 Copynumber: 4.6 Consensus size: 40
14818892 AAGCTTTATC
*
14818902 CCTAGCAGCCTTCGTGTCGGTGTTTTTATCAGTCTTAGTG
1 CCTAGCAGCCTTCGTGTCGGTGTATTTATCAGTCTTAGTG
* *
14818942 CCTAGCAGCGTTCGTGTCGGTGTATTTATTGAG-CTTAGTG
1 CCTAGCAGCCTTCGTGTCGGTGTATTTA-TCAGTCTTAGTG
* * * * *
14818982 CCTAGTTAAG-CTTCATGCCAGTGTATTTTATCAGGC-TATGTG
1 CCTAG--CAGCCTTCGTGTCGGTGTA-TTTATCAGTCTTA-GTG
* * * * * *
14819024 CCTAGCAGGCTTTGTG-CTGGTGTAGTTATCGGGCTTAATG
1 CCTAGCAGCCTTCGTGTC-GGTGTATTTATCAGTCTTAGTG
*
14819064 CCTAGCAAG-CTTCGTGTTGGTGTAT
1 CCTAGC-AGCCTTCGTGTCGGTGTAT
14819089 CAAATTATCT
Statistics
Matches: 117, Mismatches: 19, Indels: 22
0.74 0.12 0.14
Matches are distributed among these distances:
40 69 0.59
41 33 0.28
42 15 0.13
ACGTcount: A:0.16, C:0.19, G:0.27, T:0.37
Consensus pattern (40 bp):
CCTAGCAGCCTTCGTGTCGGTGTATTTATCAGTCTTAGTG
Found at i:14819046 original size:82 final size:80
Alignment explanation
Indices: 14818921--14819076 Score: 183
Period size: 82 Copynumber: 1.9 Consensus size: 80
14818911 CTTCGTGTCG
* * * *
14818921 GTGTTTTTATCAGTCTTAGTGCCTAGCAGCGTTCGTGTCGGTGTATTTATTGAGCTTAGTGCCTA
1 GTGTTTTTATCAGGCTTAGTGCCTAGCAGCGTTCGTGTCGGTGTAGTTATCGAGCTTAATGCCTA
*
14818986 GTTAAGCTTCATGCCA
66 G-CAAGCTTCATGCCA
* *
14819002 GTGTATTTTATCAGGC-TATGTGCCTAGCAG-GCTTTGTG-CTGGTGTAGTTATCGGGCTTAATG
1 GTGT-TTTTATCAGGCTTA-GTGCCTAGCAGCG-TTCGTGTC-GGTGTAGTTATCGAGCTTAATG
14819064 CCTAGCAAGCTTC
62 CCTAGCAAGCTTC
14819077 GTGTTGGTGT
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
81 15 0.23
82 49 0.77
ACGTcount: A:0.17, C:0.19, G:0.26, T:0.38
Consensus pattern (80 bp):
GTGTTTTTATCAGGCTTAGTGCCTAGCAGCGTTCGTGTCGGTGTAGTTATCGAGCTTAATGCCTA
GCAAGCTTCATGCCA
Found at i:14819963 original size:21 final size:21
Alignment explanation
Indices: 14819937--14819983 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
14819927 CGTACATAGG
*
14819937 CATGTGAAGTAGTCACACGAA
1 CATGTGAAGTAGCCACACGAA
*
14819958 CATGTGAAGTAGCCACACGAC
1 CATGTGAAGTAGCCACACGAA
14819979 CATGT
1 CATGT
14819984 CTTGAGCCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.19
Consensus pattern (21 bp):
CATGTGAAGTAGCCACACGAA
Found at i:14829682 original size:25 final size:27
Alignment explanation
Indices: 14829644--14829701 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
14829634 CAAGAATGAT
*
14829644 AAAAGAAATAATAAAATAACAA-GAAA
1 AAAATAAATAATAAAATAACAACGAAA
*
14829670 AAAATAAAT-ATAAAATAATAACGAAA
1 AAAATAAATAATAAAATAACAACGAAA
*
14829696 ATAATA
1 AAAATA
14829702 GCAAAATGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
25 11 0.39
26 17 0.61
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.17
Consensus pattern (27 bp):
AAAATAAATAATAAAATAACAACGAAA
Found at i:14831249 original size:40 final size:39
Alignment explanation
Indices: 14831204--14831315 Score: 109
Period size: 40 Copynumber: 2.8 Consensus size: 39
14831194 ATCGAGATAT
* *
14831204 GTGCCTAACAAGCTTTGTACTGGTGTAGTTATCAGGCTTTA
1 GTGCCTAGCAAGCTTTGT-CTGGTGTAGTTATCAGGC-CTA
* * * * *
14831245 -TGCCTAGTAGGCTTCGTGCTGGTGTATTTATCGGGCCTA
1 GTGCCTAGCAAGCTTTGT-CTGGTGTAGTTATCAGGCCTA
*
14831284 GTGCCTAGCAAGCTTTGTGTCGGTGTAGTTAT
1 GTGCCTAGCAAGCTTTGTCT-GGTGTAGTTAT
14831316 TGAGATTGAT
Statistics
Matches: 56, Mismatches: 13, Indels: 5
0.76 0.18 0.07
Matches are distributed among these distances:
39 3 0.05
40 53 0.95
ACGTcount: A:0.17, C:0.18, G:0.29, T:0.37
Consensus pattern (39 bp):
GTGCCTAGCAAGCTTTGTCTGGTGTAGTTATCAGGCCTA
Found at i:14831328 original size:80 final size:80
Alignment explanation
Indices: 14831204--14831351 Score: 201
Period size: 80 Copynumber: 1.9 Consensus size: 80
14831194 ATCGAGATAT
* * *
14831204 GTGCCTAACAAGCTTTGTACTGGTGTAGTTATCAGGCTTTATGCCTAGTAGGCTTCGTGCTGGTG
1 GTGCCTAACAAGCTTTGTACTGGTGTAGTTATCAGGATTGATGCCTAGTAGGCTTCGTGCCGGTG
14831269 TATTTATCGGGCCTA
66 TATTTATCGGGCCTA
* * * *
14831284 GTGCCTAGCAAGCTTTGT-GTCGGTGTAGTTAT-TGAGATTGATGCCTAGTAGGCTTTGTGCCGG
1 GTGCCTAACAAGCTTTGTACT-GGTGTAGTTATCAG-GATTGATGCCTAGTAGGCTTCGTGCCGG
14831347 TGTAT
64 TGTAT
14831352 CAAATTGTCT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
79 2 0.03
80 57 0.97
ACGTcount: A:0.17, C:0.17, G:0.30, T:0.36
Consensus pattern (80 bp):
GTGCCTAACAAGCTTTGTACTGGTGTAGTTATCAGGATTGATGCCTAGTAGGCTTCGTGCCGGTG
TATTTATCGGGCCTA
Found at i:14842542 original size:35 final size:35
Alignment explanation
Indices: 14842503--14842690 Score: 118
Period size: 35 Copynumber: 5.4 Consensus size: 35
14842493 AATGTTTTAC
14842503 GCCCAACGAC-AGTTGGATAAGCCAATGATAAGTGT
1 GCCCAAC-ACTAGTTGGATAAGCCAATGATAAGTGT
* * * * *** *
14842538 GCCCAACACTAGTCGAATAATCGAAT-ATGTTTTGC
1 GCCCAACACTAGTTGGATAAGCCAATGAT-AAGTGT
*
14842573 GCCCAACACTAGTTGGATAAGCCAACGATAAGTGT
1 GCCCAACACTAGTTGGATAAGCCAATGATAAGTGT
* *** * * *
14842608 GCCCAGCACTAGTCAAATAA-TCAACGAT--GTTTT
1 GCCCAACACTAGTTGGATAAGCCAATGATAAG-TGT
* *
14842641 CCGCCTAACACTAGTTGGATAAACCAAAT-ATAAGTGT
1 --GCCCAACACTAGTTGGATAAGCC-AATGATAAGTGT
14842678 GCCCAACACTAGT
1 GCCCAACACTAGT
14842691 CAAATAATCA
Statistics
Matches: 111, Mismatches: 32, Indels: 20
0.68 0.20 0.12
Matches are distributed among these distances:
32 1 0.01
33 2 0.02
34 11 0.10
35 87 0.78
36 5 0.05
37 4 0.04
38 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.19, T:0.23
Consensus pattern (35 bp):
GCCCAACACTAGTTGGATAAGCCAATGATAAGTGT
Found at i:14842587 original size:70 final size:69
Alignment explanation
Indices: 14842468--14842726 Score: 326
Period size: 70 Copynumber: 3.7 Consensus size: 69
14842458 ATCTCTTTGC
* *
14842468 GCCCAGCACTAGTCAAATAATCGACA-ATGTTTTACGCCCAACGAC-AGTTGGATAAGCCAATGA
1 GCCCAACACTAGTCAAATAATC-A-ATATGTTTTGCGCCCAAC-ACTAGTTGGATAAGCCAATGA
14842531 TAAGTGT
63 TAAGTGT
* *
14842538 GCCCAACACTAGTCGAATAATCGAATATGTTTTGCGCCCAACACTAGTTGGATAAGCCAACGATA
1 GCCCAACACTAGTCAAATAATC-AATATGTTTTGCGCCCAACACTAGTTGGATAAGCCAATGATA
14842603 AGTGT
65 AGTGT
* * * * *
14842608 GCCCAGCACTAGTCAAATAATCAACGATGTTTTCCGCCTAACACTAGTTGGATAAACCAAAT-AT
1 GCCCAACACTAGTCAAATAATCAA-TATGTTTTGCGCCCAACACTAGTTGGATAAGCC-AATGAT
14842672 AAGTGT
64 AAGTGT
* *
14842678 GCCCAACACTAGTCAAATAATCAATAAGATTTTTGCACCCAACACTAGT
1 GCCCAACACTAGTCAAATAATCAATATG--TTTTGCGCCCAACACTAGT
14842727 CTGATTAATC
Statistics
Matches: 166, Mismatches: 17, Indels: 11
0.86 0.09 0.06
Matches are distributed among these distances:
69 7 0.04
70 141 0.85
71 18 0.11
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (69 bp):
GCCCAACACTAGTCAAATAATCAATATGTTTTGCGCCCAACACTAGTTGGATAAGCCAATGATAA
GTGT
Found at i:14850994 original size:13 final size:14
Alignment explanation
Indices: 14850978--14851007 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14850968 ATGCTTGATG
14850978 TTAATTGAA-GTAA
1 TTAATTGAATGTAA
14850991 TTAATTGAATGTAA
1 TTAATTGAATGTAA
14851005 TTA
1 TTA
14851008 TCTATTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.43, C:0.00, G:0.13, T:0.43
Consensus pattern (14 bp):
TTAATTGAATGTAA
Found at i:14857730 original size:15 final size:14
Alignment explanation
Indices: 14857707--14857759 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
14857697 GTTTTTATAT
*
14857707 TAATTATAAAGGTTA
1 TAATAATAAA-GTTA
14857722 TAATAATAAA-TTA
1 TAATAATAAAGTTA
*
14857735 TATATTATAAAGTTA
1 TA-ATAATAAAGTTA
*
14857750 TTATAATAAA
1 TAATAATAAA
14857760 AACAAAACAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 5 0.16
14 14 0.44
15 13 0.41
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (14 bp):
TAATAATAAAGTTA
Found at i:14863568 original size:51 final size:50
Alignment explanation
Indices: 14863447--14863628 Score: 188
Period size: 51 Copynumber: 3.6 Consensus size: 50
14863437 GATGTTCATG
* *
14863447 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAATGGTA--GGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTA-CGG-ATAGTATTGGTCACA
* * * ** * * *
14863497 TGTTTAGTGCTATGTACAGGCTACTATACGTACGGGATAGTTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTAC-GGATAGTATTGGTCACA
* * *
14863548 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGTGTA-CGGATAGTATTGGTCACA
*
14863599 TGTGTAGTACTATGTGCAAGCTACTATGTG
1 TGTGTAGTACTATGTGCAGGCTACTATGTG
14863629 AACCGAACAT
Statistics
Matches: 105, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
49 5 0.05
50 29 0.28
51 70 0.67
52 1 0.01
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.33
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTATGTGTACGGATAGTATTGGTCACA
Found at i:14863628 original size:26 final size:26
Alignment explanation
Indices: 14863548--14863628 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
14863538 TTTGATCACG
*
14863548 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
* * * *
14863574 CGTGTA-T-CGGATG-GTAATGGTCAC-A
1 TGTGTAGTAC-TATGTGCAA-GCT-ACTA
14863599 TGTGTAGTACTATGTGCAAGCTACTA
1 TGTGTAGTACTATGTGCAAGCTACTA
14863625 TGTG
1 TGTG
14863629 AACCGAACAT
Statistics
Matches: 39, Mismatches: 9, Indels: 14
0.63 0.15 0.23
Matches are distributed among these distances:
24 3 0.08
25 14 0.36
26 18 0.46
27 4 0.10
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAAGCTACTA
Found at i:14863721 original size:45 final size:45
Alignment explanation
Indices: 14863635--14863721 Score: 147
Period size: 45 Copynumber: 1.9 Consensus size: 45
14863625 TGTGAACCGA
* * *
14863635 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTTATTCCACTGG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACTGG
14863680 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCAC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCAC
14863722 CGAGTATCTG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.15, G:0.22, T:0.37
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACTGG
Found at i:14866391 original size:18 final size:19
Alignment explanation
Indices: 14866368--14866403 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14866358 AACCTTAACA
*
14866368 ATAAAGTTAAATA-ATTTG
1 ATAAAGTAAAATATATTTG
14866386 ATAAAGTAAAATATATTT
1 ATAAAGTAAAATATATTT
14866404 TTGATATGTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (19 bp):
ATAAAGTAAAATATATTTG
Found at i:14871638 original size:959 final size:958
Alignment explanation
Indices: 14866777--14871749 Score: 6684
Period size: 958 Copynumber: 5.2 Consensus size: 958
14866767 ATTAAACAAT
*
14866777 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGTATGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * *
14866842 TTGCTGAGTGCATACAGCTTGTAAGCATGCTACAACATTTGTGCACTG-T--AGCAACATATTTT
66 TTGCTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCA-TGTTGCAGCAACATATTTT
* * * * *
14866904 TTGTTTTAGTTGCAATGTAATTAAGTTTGGTTGAGAATGAACGTTGATGTTGATGTTTTGATCGG
130 CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGG
* *
14866969 ATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGA
195 ATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGA
* *
14867034 TTAGTAGGGTTAGTTGAATATTTGGTGAAGTATTTTGACGATAAATGTATTGTTTTCATATTGAA
260 TTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAA
* * * * *
14867099 TGAGCTAGCATATCAGTTGTGTAAGGTAGATTGCTTCCTTGCTGCATGTTTGTGACCAAGTAAAT
325 TGAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAAT
* * * * *
14867164 TGTTCTTTGTTTCTTCCTCATTTGTTCTTTCTATTGTTCTCTTCTTTTGCTGCTCTCAAAAACAC
390 TGTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAACCC
* * * *
14867229 AACAAATGGTATCATGAGTCCAAGTCTTTAAGGGCTTGATTTTGCTTCTGTTGCTTGTTAAGAAA
455 AACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAA
* * * * * * * *
14867294 GACGAGAAGTTGTTACAGCCTGTCATCTTTGTGGGTTACTTGTAAAAAAGACATCACCAGCTCAC
520 GACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTCAC
* * * *
14867359 CCCTGTGAGGCTCCCAGACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTATGTGCAAGAAGA
585 CCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAAGA
* * * *
14867424 CACTCCACAGCACGACGGAGTATGTGCAAGAAGAAATAGGACTGTAATGAACAAAAGAACAAGGC
650 CACTCCACAGCAAGAGGGAGTATGTGCAAGAAGAAATAGGACTATAATGAACAAAGGAACAAGGC
* * * *
14867489 AAGATGTATTTGAAAGCAAGTAGT-CAGCCTAGGCTGTGAAGGAGGAGAAAACTCCATTTGATGA
715 AAGATGTATTTGAAGGCAAGT-TTCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGA
* *
14867553 ACAAATCCTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTTGTTGAGAATGAGG
779 ACAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGG
* *
14867618 CCAAGGTTGAAGATGAATTGCTTGAGCAATGTCAACTTTAAAAGCATTTTGGGACTGCCAAGCTC
844 CCAAGGTTGAAGATGAATTGCTTGAGCAAGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTC
* * ** *
14867683 AAAAAAACTTGATGAAGGATTTGTATTTTTAGCATGAAGGCCAAGAAGGA
909 AAAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * *
14867733 GTGTTGAAAATGGCCAACCATGCTGTTGTTATGGTTTTGTTAAAGTGCATGGTACTAAGATAATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * ** *
14867798 TTGTTGAGTGCATACAGATTGTATGCATGTTGCAGCATTTGTG-ATTGCCGCAACAACATATTTT
66 TTGCTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCA-TGTTGCAGCAACATATTTT
* *
14867862 AC-ATTTTAGTTGCAATGTAATTTAGTTTGGTTAAGAATTAACTTTGATGTTGATGTTTTGATGG
130 -CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGG
* * * *
14867926 GATGATTGAGCTGATAGGTCAGCTTATCCATGTGTACAAGTAATGTTTTAAGAGTTCCAATGCTG
194 GATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTG
*
14867991 ATTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACTATAAATGTATTGTTTTCATATTGA
259 ATTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGA
* * * ** * *
14868056 ATGAGCAGGCATAT-AATTGTCTAAAGCAGATCACTTCCTTGCTGTACGTTTGTGTGCAAGTAAA
324 ATGAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAA
* * *
14868120 TTGTTCTTTTTTTCTTCCTCCTTTGCTCTCTGTATTGTTCTCTTTTTTTGCTGCTGTCAAAAACC
389 TTGTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAACC
* * * * * * *
14868185 CAAAAAAATTGTAT-ACTTAGCCCTAGACTTTGAGGGCTTG-TTTTACTTCTGCTACTTGTTAAA
454 C-AACAAATGGTATCA-TGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAG
* * ** ** *
14868248 AAAGATAAGAAGCTGTTAAAGCCTGTCATCTTTGAGAGCTGCACGTAAAAAAGACAATAGCATCT
517 AAAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCT
* * * * * * *
14868313 CACCCTTGTGAGACTCTCAAATAAGCTTGGGATAAGCTGTAGGAGTTTATCGAGTTCGTACATGA
582 CACCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGA
* * * * * *
14868378 AGACACTCCACAGTAGGAGGGAGTATGTGCAAGAAGAAATAGGACTATACTGGACATAGGAATAA
647 AGACACTCCACAGCAAGAGGGAGTATGTGCAAGAAGAAATAGGACTATAATGAACAAAGGAACAA
* * * *
14868443 GGCAAGATGTATTTGAAGGCAAGTTGCCAGCCAAGTCTGTAAAGGAGGAGAAGAATCCATTTGAT
712 GGCAAGATGTATTTGAAGGCAAGTTTCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGAT
** *
14868508 GAACAAATCTTTGGCACAAAAGACTAAGATAGTCAAGTGTGTGAATCAGATTTGGTTGAGAATGA
777 GAACAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGA
14868573 GGCCAAGGTTGAAGATGAATTGCTTGAGC-AGGATCAACTTGAAAAGCATTTTGGGACTGCCAAG
842 GGCCAAGGTTGAAGATGAATTGCTTGAGCAAGG-TCAACTTGAAAAGCATTTTGGGACTGCCAAG
* *
14868637 CTCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGGAGGCCAATGAGGA
906 CTCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * * *
14868690 GTGTTGAAAATGGCCAACCATGTTGCTATTATCTTTTTGTTAAAGGGCACGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * * * *
14868755 TTGTTAAGTGCATACAGATTGTATGCATGTTGCAGTATTTATGCTTGTTGCAGCTACATATTTTC
66 TTGCTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
* * * * *
14868820 TGTTTTAGTTGGAATGTAATTTAGTTTGGCTGAGAATGAACTTTGATGTTGAAGTTTTGATGGAA
131 TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
* * * *
14868885 TGATTGAGCTGATAAGTCAGCTTATCCATGTCTACAAGCAATGTTTTAATAGTCCCAATGCTGAT
196 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
* * * * *
14868950 TAGTGGGGTTAGTTGACTATTTTGTAATGTATTTTGACTATAAATGTATTGTTTTTATATTGAAT
261 TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
* * * *
14869015 GAGCAAGCATATTAGTTGTGTAAAGAAGATTGCTTTCTTGCTGCACGTTTGTCAGCAAGTAAATT
326 GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
* * * * * *
14869080 GTTCTTTGTTTCTTCCACCATTGTTCTCTGTATTGTTCTATGCTTTTACTGCTGTAAAAAACCCA
391 GTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAACCCA
* * * * *
14869145 ACGAATGGTATCATGAGCCCAAGTCTTTCAAGGCTTGTTTTTG-TTGCTACTACTTGTTAAGAAA
456 ACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTT-CTGCTACTTGTTAAGAAA
* * * * *
14869209 GACAAGAAGCTATTAAAGCCTATCATCTTTGAGGGTTGCTTGTAAAAAAAGATAGTAGCAGCTCA
520 GACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGT-AAAAAAGACAGCAGCAGCTCA
* * * *
14869274 TCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGAAGTTGATCGAGTTTTTGCATGAGG
584 CCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAAG
** * * * * * *
14869339 ACACTTTATAGTAGGAGGTAGTATGTGCAAGAAAAAATAGGACTATAATGAACAAATGAACAAGG
649 ACACTCCACAGCAAGAGGGAGTATGTGCAAGAAGAAATAGGACTATAATGAACAAAGGAACAAGG
* * * * * * *
14869404 CAAGATGAATTTGAAGGCAAGTTGT-CAACCAAGGTTGTGAAGGACGACAAGATTCTATTTGATG
714 CAAGATGTATTTGAAGGCAAGTT-TCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATG
* * *
14869468 AAC-AATCTTTGGCACAAAAGACAGGGATAGTCAAGTGTGCAAATCAGATTTGGTTGAGAATAAG
778 AACAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAG
* * *
14869532 GCCAAGTTTGAAGATGAATTGCTTGAGC-AGCGACAACTTGAAAAGCATTTTGGGACAGCCAAGC
843 GCCAAGGTTGAAGATGAATTGCTTGAGCAAG-GTCAACTTGAAAAGCATTTTGGGACTGCCAAGC
* * * * *
14869596 TCAAAAAAAATTGATGAATGATTAGTATTTACAGCATGTAA-GCCAAAGACGA
907 TCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATG-AAGGCCAAGGAGGA
* *
14869648 GTGTTGAAAATGGCCAACCATGCTGCTGTTTTGTTTTTTTTAAAGTGCATGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * *
14869713 TTGCTGAG-GCTATACTGATTATATGCATGCTGCGGCATTTGTGCATGTTGCAGTAACAGATTTT
66 TTGCTGAGTGC-ATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTT
* * * *
14869777 CTATTTTAGTTCCAATATAATTTAGTTTGGTTGAGAATGAACATTGATATTGATGTTTTGATGGG
130 CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGG
* * *
14869842 ATGATTGAGTTAATAAGTCAACTTATCCATGTGTACAAGCAAA-GTTTTAGTAGTTCCAATGCTG
195 ATGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAG-AAATGTTTTAATAGTTCCAATGCTG
14869906 ATTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGA
259 ATTAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGA
* * *
14869971 ATTAGCAAGCATATCAGTTGTGTAAAGTAGATTGCTTCCTTGCTGCACGTTTATGAGCAAGTAAA
324 ATGAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAA
* *
14870036 TTGTTCTTTGTTTCTTCCTCATTTGTTCTCTGTATTGTTCTCTT-TTTCTGCTGCTGTCAAAATC
389 TTGTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTT-TGCTGCTGTCAAAAAC
* * * *
14870100 TCAACTAATGGTATCATGAGCCCTAGTCTTTGAGAGCTTGATTTT-CTTCTGCTACTTGTTGAA-
453 CCAACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTT-AAG
* ** * * *
14870163 AAAGGCAATTAGCTGTTAAAACCTGTCATCTTCGA-GGCTGCTTGTAAAAAAGATAGCAGCAGCT
517 AAAGACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCT
* * * * *
14870227 CACCCCTGTGAGACTCCCAAACAAACTTGGCATAAGTTGAAGGAGTTGATGGAGTATGTGCATGA
582 CACCCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGA
* *** *
14870292 AGACACTCCAC-GACAAGAGGTG-GTATGTGTAAGAAGAAATAGGAGGGTAATGGACAAAGGAAC
647 AGACACTCCACAG-CAAGAGG-GAGTATGTGCAAGAAGAAATAGGACTATAATGAACAAAGGAAC
* * * ** * * * *
14870355 AAGGAAAAATGTAGTTGAAGAAAAGTTACCAACCAAGGATGTGAAGGAGGAGTAGACTCCATTTG
710 AAGGCAAGATGTATTTGAAGGCAAGTTTCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTG
* * *
14870420 ATGAACAAATCTTTGGCACAAAAGACTAGGATAGTCAAGTGTACGGATCAGATTTGGTTGAGAAT
775 ATGAACAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAAT
* * * * *
14870485 AATGCCAAGGTTGAAGATGAATTGCTTAAGCAGGGTCAACTTGAAAAGCATTTTGGGACTTCCAA
840 GAGGCCAAGGTTGAAGATGAATTGCTTGAGCAAGGTCAACTTGAAAAGCATTTTGGGACTGCCAA
* * * * *
14870550 GCTCAAAAAAACTTGATGAGTGATAGGTATTTGCGGCATGAAGACTAAGGAGGA
905 GCTCAAAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * *
14870604 GTGTTGAAAATGGCCAGCCATGTTGCTGTTATGTTTTTATTAAAGTGCATGGTACTATGATGATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
* * * * * * * *
14870669 TTGTTGAGTGCCTACAGATTATATGCATGCTGTAGCATTTGTGCATGTTACAACAACATTTTTTT
66 TTGCTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
* *
14870734 TGTTTTAGTTTCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
131 TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
*
14870799 TGATTTAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
196 TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
* *
14870864 TAGTAGGGTTAGTTGAATATTTGGTGATGTATTTTGACAATAAATGTATTGTTTTCATATTGAAT
261 TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
* * *
14870929 GAGCAAGTATATCAGTTGTGTAAAGCAGATTACTTCCTTGCTGAACGTTTGTGAGCAAGTAAATT
326 GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
* * * *
14870994 GTTCTTTTTTTTCTTTCTCCTTTGTTCTTTGTATTGTTCTCTTCTTTTGCTACTGTCAAAAACCC
391 GTTC-TTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAACCC
* * **
14871059 AACAAATGGTATCATGATCCCAAGTCTTTGAGGGCTTGTTTTTGCTTCTGCTACTCATTAAGAAA
455 AACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAA
* * * *
14871124 GACAATAAGTTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGTAGCTCAT
520 GACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTCAC
* ** * * * * *
14871189 CCCTGTAAGACTCTAAAACAAGCTTGGGATAAGTTGTAGGAGTTAATTGAGTTTGTACATGAAGA
585 CCCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAAGA
* * * * *
14871254 CACTCCATAGCAAGAGGGAGTCTATGCAAGAACAAATAGGACTATAATGAACAAAGGAGCAAGGC
650 CACTCCACAGCAAGAGGGAGTATGTGCAAGAAGAAATAGGACTATAATGAACAAAGGAACAAGGC
*
14871319 AAGATGTATTTGAAGGCAAGTTTCCAGCCAAGGCTGTAAAGGAGGAGAAGACTCCATTTGATGAA
715 AAGATGTATTTGAAGGCAAGTTTCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAA
* * *
14871384 CAAATCTTTGGCACAAAAGATTGGGATAGTCAAGTGTGCGAATCAGATTTGGATGAGAGTGAGGC
780 CAAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGC
* * * * * *
14871449 GAAGGTTAAAGATGAATTGCTTGAGCAAGGTTAACTTGAAAAGTATTTTGGGACTGGCAAGCTTA
845 CAAGGTTGAAGATGAATTGCTTGAGCAAGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCA
* *
14871514 AAAAAACTTGATGAATGATTGGCATTTGCAGCATGAAGGCCAAGGAGAA
910 AAAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
* * * * *
14871563 GTGTTGAAAATGACCAACCATGTTGCTGTTTTGTTTTTGTTAAAGTGCATGGTACCATGATAATT
1 GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
*
14871628 TTGCTGAGTGCATACATG-TTGTATGCATGCTGCAGCATTTGTGCATGTTGTAGCAACATATTTT
66 TTGCTGAGTGCATACA-GATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTT
* * * *
14871692 CTATTTTAGTTACAATGTAATTTAGTTTCGTT-AGGAATAAACTTTGATGATGATGTTT
130 CTATTTTAGTTGCAATGTAATTTAGTTTGGTTGA-GAATGAACTTTGATGTTGATGTTT
14871750 GGTGATGTAT
Statistics
Matches: 3486, Mismatches: 491, Indels: 77
0.86 0.12 0.02
Matches are distributed among these distances:
954 1 0.00
955 186 0.05
956 614 0.18
957 966 0.28
958 1022 0.29
959 695 0.20
960 2 0.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (958 bp):
GTGTTGAAAATGGCCAACCATGCTGCTGTTATGTTTTTGTTAAAGTGCATGGTACTATGATGATT
TTGCTGAGTGCATACAGATTGTATGCATGCTGCAGCATTTGTGCATGTTGCAGCAACATATTTTC
TATTTTAGTTGCAATGTAATTTAGTTTGGTTGAGAATGAACTTTGATGTTGATGTTTTGATGGGA
TGATTGAGTTGATAAGTCAGCTTATCCATGTGTACAAGAAATGTTTTAATAGTTCCAATGCTGAT
TAGTGGGGTTAGTTGAATATTTGGTGATGTATTTTGACGATAAATGTATTGTTTTCATATTGAAT
GAGCAAGCATATCAGTTGTGTAAAGCAGATTGCTTCCTTGCTGCACGTTTGTGAGCAAGTAAATT
GTTCTTTGTTTCTTCCTCCTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTGCTGTCAAAAACCCA
ACAAATGGTATCATGAGCCCAAGTCTTTGAGGGCTTGATTTTGCTTCTGCTACTTGTTAAGAAAG
ACAAGAAGCTGTTAAAGCCTGTCATCTTTGAGGGCTGCTTGTAAAAAAGACAGCAGCAGCTCACC
CCTGTGAGACTCCCAAACAAGCTTGGGATAAGCTGAAGGAGTTGATCGAGTTTGTGCATGAAGAC
ACTCCACAGCAAGAGGGAGTATGTGCAAGAAGAAATAGGACTATAATGAACAAAGGAACAAGGCA
AGATGTATTTGAAGGCAAGTTTCCAGCCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAC
AAATCTTTGGCACAAAAGACTGGGATAGTCAAGTGTGCGAATCAGATTTGGTTGAGAATGAGGCC
AAGGTTGAAGATGAATTGCTTGAGCAAGGTCAACTTGAAAAGCATTTTGGGACTGCCAAGCTCAA
AAAAACTTGATGAATGATTGGTATTTGCAGCATGAAGGCCAAGGAGGA
Found at i:14871898 original size:22 final size:22
Alignment explanation
Indices: 14871856--14871905 Score: 55
Period size: 22 Copynumber: 2.1 Consensus size: 22
14871846 AGCAAGTAAA
* *
14871856 TTGTTCTTTGTTTTTTCCTCTT
1 TTGTTCTCTGTTTGTTCCTCTT
14871878 TTGTTCTCTGTATTGTTCTCTTCTT
1 TTGTTCTCTGT-TTGTTC-C-TCTT
14871903 TTG
1 TTG
14871906 CTACTGTAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 10 0.43
23 5 0.22
24 1 0.04
25 7 0.30
ACGTcount: A:0.02, C:0.18, G:0.12, T:0.68
Consensus pattern (22 bp):
TTGTTCTCTGTTTGTTCCTCTT
Found at i:14873731 original size:945 final size:954
Alignment explanation
Indices: 14871747--14873829 Score: 3027
Period size: 945 Copynumber: 2.2 Consensus size: 954
14871737 GATGATGATG
*
14871747 TTTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATACTGAATGAGCAAGCATATCAGTTGT
1 TTTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATAATGAATGAGCAAGCATATCAGTTGT
* * ** * *
14871812 GTAAAGTAGATTGCTTCATTGTTGCATGTTTGTAAGCAAGTAAATTGTTCTTTGTTTTTTCCTCT
66 GTAAAGCAGATTGCTTCATTGCTGCACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTCT
*
14871877 TTTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTAAAAACCCAAAAAATAGTATCATGAGCCC
131 TTTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTAAAAACCCAACAAATAGTATCATGAGCCC
*
14871942 AAGTCTTTGAGGGCTTGTTTTTGCTTCTGCTGCTTGTTAAAAAAGACAAGAAGCTGTTAAAGCCT
196 AAGTCTTTGAAGGCTTGTTTTTGCTTCTGCTGCTTGTTAAAAAAGACAAGAAGCTGTTAAAGCCT
* *
14872007 GTCATCTTTGAAGGTTGTTTGTAAAAAAGATAGAAGTAGCTCACCCCTATGAGACTCCCAAACAA
261 GTCATCTTTGAAGGTTGCTTGTAAAAAAGACAGAAGTAGCTCACCCCTATGAGACTCCCAAACAA
* *
14872072 GCTTGGGATAAGCTGAAGGAGTTAATCAAGTATGTGCATGAAGACACTTCATAGTAGGAAGGAGT
326 GCTTGGG--AA-CT-AA-GAGTTAATCAAGTATGTGCATGAAGACACTCCACAGTAGGAAGGAGT
* * *
14872137 GTGTGCAAGAACAAATAGGACTATAATGAACAAAAGAAAATGGCAAGATGTATTTGAAGGCAAGT
386 ATGTGAAAGAAAAAATAGGACTATAATGAACAAAAGAAAATGGCAAGATGTATTTGAAGGCAAGT
*
14872202 TGCCAACCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAAAAATCTTTGGCTCAAAAGAC
451 TGCCAACCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAAAAATCTTTGGCACAAAAGAC
* *
14872267 TAGGATAGTCAAGTGTGTGAATCAGATTTGGTTGAGAATGAGGCTAAGGTTGAAGATGAATTGCT
516 TAGGATAGTCAAGTGTGCGAATCAGATTTGGATGAGAATGAGGCTAAGGTTGAAGATGAATTGCT
* *
14872332 TGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTACCAAGCTCAAAAAAACTTGATGAATGATTT
581 TGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTACCAAGCTCAAAAAAACTTGATAAATGATTG
* *
14872397 GTATTTGCAGCATGGAGGCCAATGAGGAGTGTTGAAAAATCGCCAACCATGCTGCTGTTATGTTT
646 GTATTTGCAGCATGGAGGCCAAGGAGGAGTGTTGAAAAATCGCCAACCATGCTGCTATTATGTTT
** * * * * * * ** *
14872462 TTGTTAGAGTGCATGGTATTATGATGATTTTGTTGAGTGCATACAGATTGTATGCATGCTGTAGT
711 TTCCTAAAGTGCATGGTACTATGATGATTTTGCTGAGTGAATACAGACTATATGCATGCTACAGC
* * * * * *
14872527 ATTTTGTGCATGTTGCAGCAATATATTTTCTGTTTTAGTTGGAATGTAATTTAGTTTGGTTGCGA
776 ATTTTGTGCATGTTGCAACAACATATTTTCTATTTTAGTCGCAATGTAATTTAGTTTGGTTGAGA
* *
14872592 ATAAACTTTGATGTTGATGTTTTGATGGGATGATTGAGCTGATATGTCAGCTTATCCATGTGTAC
841 ATAAACTTTGATGTTGATGTTTTGATAGGATGATTGAGCTGATAAGTCAGCTTATCCATGTGTAC
14872657 AAGCAATGTTTGAATAATCCCAATGCTGATTAGTGGGGTTAGTTGAATA
906 AAGCAATGTTTGAATAATCCCAATGCTGATTAGTGGGGTTAGTTGAATA
* *
14872706 TTTGGTGATGTATTTTGACT-ATAAATGTATTATTTTCATATTGAATGAGCAAGCATATCAGTTG
1 TTTGGTGATGTATTTTGA-TGATAAATGTATTGTTTTCATAATGAATGAGCAAGCATATCAGTTG
**
14872770 TGTAAAGC-GTATTGCTTTC-TTGCCACACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCC
65 TGTAAAGCAG-ATTGC-TTCATTGCTGCACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCC
* * * * *
14872833 TCTTTTGTTCTTTGTATTGTTCTTTTCTTTTGCTATTGTAAAAAACACAACAAATGGTATCATGA
128 TCTTTTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGT-AAAAACCCAACAAATAGTATCATGA
* * * * *
14872898 GCCCAAGTCTTTGAAGGCTT-TTTTTGCTTTTGTTGCTTTTTAAGAAAGACAAGACA-TTGTTAA
192 GCCCAAGTCTTTGAAGGCTTGTTTTTGCTTCTGCTGCTTGTTAAAAAAGACAAGA-AGCTGTTAA
* * * *
14872961 AGCCTGTCATCTTTGAGGGTTGCTTGTAAAACAA-ACAGTAGTAGCTCACCTCTGTGAGACTCCC
256 AGCCTGTCATCTTTGAAGGTTGCTTGTAAAA-AAGACAGAAGTAGCTCACCCCTATGAGACTCCC
* * *
14873025 AAACAAGCTTGGG-A-T-A-AGTTGATCGAGTTTGTGCATGAAGACACTCCACAGTA-GAAGGGA
320 AAACAAGCTTGGGAACTAAGAGTTAATCAAGTATGTGCATGAAGACACTCCACAGTAGGAA-GGA
* * * *
14873085 GTATGTGAAAGAAAAAATAGGACTGTAATGAACAAAGGAGCAAT-GCTAGATGTATTTGAAGGCA
384 GTATGTGAAAGAAAAAATAGGACTATAATGAACAAAAGA-AAATGGCAAGATGTATTTGAAGGCA
* *
14873149 AGTTGCCAACCAAGGTTGTGAAGGA-G-G-AGACTCCATTTGATGAACAAATCTTTGGCACAAAA
448 AGTTGCCAACCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAAAAATCTTTGGCACAAAA
* * *
14873211 GATTGGGATAGTCAAGTGTGCGAATCTGATTTGGATGAGAATGAGGCTAAGGTTGAAGATGAATT
513 GACTAGGATAGTCAAGTGTGCGAATCAGATTTGGATGAGAATGAGGCTAAGGTTGAAGATGAATT
* * * *
14873276 GCTTGAGCAGGGTCAACTTGAAACGCATTTTGGGACTGCTAGGCTCAAAAAAAACTTGATAAATG
578 GCTTGAGCAGGGTCAACTTGAAAAGCATTTTGGGACTACCAAGCTC-AAAAAAACTTGATAAATG
14873341 ATTGGTATTTGCAGCATGGAGGCCAAGGAGGAGTGTTG-AAAAT-GACCAACCAT-CTTGCTATT
642 ATTGGTATTTGCAGCATGGAGGCCAAGGAGGAGTGTTGAAAAATCG-CCAACCATGC-TGCTATT
* * * *
14873403 TTGTTTTTCCTAAAGTGCATGGTACTATGATGATTTTGCTGAGTTAATATATACTATATGCATGC
705 ATGTTTTTCCTAAAGTGCATGGTACTATGATGATTTTGCTGAGTGAATACAGACTATATGCATGC
14873468 TACAGCA-TTTGTGCATGTT-CAACAACATATTTTCTATTTTAGTCGCAATGTAATTTAGTTTGG
770 TACAGCATTTTGTGCATGTTGCAACAACATATTTTCTATTTTAGTCGCAATGTAATTTAGTTTGG
* *
14873531 TTGAGAATGAACTTTGATGTTGATGTTTTGATAGGATGATTGAGTTGATAAGTCAGCTTATCCAT
835 TTGAGAATAAACTTTGATGTTGATGTTTTGATAGGATGATTGAGCTGATAAGTCAGCTTATCCAT
* * * *
14873596 GTGTACAAGCAATGTTTTAATAGTTCCAATGTTGATTAGTGGGGTTAGTTGAATA
900 GTGTACAAGCAATGTTTGAATAATCCCAATGCTGATTAGTGGGGTTAGTTGAATA
* *
14873651 TTTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATAATGAATGAGCAAGTATATCAGCTGT
1 TTTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATAATGAATGAGCAAGCATATCAGTTGT
* *
14873716 GTAAAGCAGATTGCTTCTTTGCTGCACATATGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTCT
66 GTAAAGCAGATTGCTTCATTGCTGCACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTCT
* * * *
14873781 TTTTTTCTCTATATTATTCTCTTCTTTTGCTGCTGTCAAAAACCCAACA
131 TTTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGT-AAAAACCCAACA
14873830 CAAGTCGACT
Statistics
Matches: 1009, Mismatches: 101, Indels: 42
0.88 0.09 0.04
Matches are distributed among these distances:
944 4 0.00
945 305 0.30
946 15 0.01
947 211 0.21
948 54 0.05
949 4 0.00
950 112 0.11
951 3 0.00
952 1 0.00
954 1 0.00
956 1 0.00
958 1 0.00
959 249 0.25
960 48 0.05
ACGTcount: A:0.29, C:0.13, G:0.23, T:0.35
Consensus pattern (954 bp):
TTTGGTGATGTATTTTGATGATAAATGTATTGTTTTCATAATGAATGAGCAAGCATATCAGTTGT
GTAAAGCAGATTGCTTCATTGCTGCACATTTGTGAGCAAGTAAATTGTTCTTTGTTTCTTCCTCT
TTTGTTCTCTGTATTGTTCTCTTCTTTTGCTACTGTAAAAACCCAACAAATAGTATCATGAGCCC
AAGTCTTTGAAGGCTTGTTTTTGCTTCTGCTGCTTGTTAAAAAAGACAAGAAGCTGTTAAAGCCT
GTCATCTTTGAAGGTTGCTTGTAAAAAAGACAGAAGTAGCTCACCCCTATGAGACTCCCAAACAA
GCTTGGGAACTAAGAGTTAATCAAGTATGTGCATGAAGACACTCCACAGTAGGAAGGAGTATGTG
AAAGAAAAAATAGGACTATAATGAACAAAAGAAAATGGCAAGATGTATTTGAAGGCAAGTTGCCA
ACCAAGGCTGTGAAGGAGGAGAAGACTCCATTTGATGAAAAAATCTTTGGCACAAAAGACTAGGA
TAGTCAAGTGTGCGAATCAGATTTGGATGAGAATGAGGCTAAGGTTGAAGATGAATTGCTTGAGC
AGGGTCAACTTGAAAAGCATTTTGGGACTACCAAGCTCAAAAAAACTTGATAAATGATTGGTATT
TGCAGCATGGAGGCCAAGGAGGAGTGTTGAAAAATCGCCAACCATGCTGCTATTATGTTTTTCCT
AAAGTGCATGGTACTATGATGATTTTGCTGAGTGAATACAGACTATATGCATGCTACAGCATTTT
GTGCATGTTGCAACAACATATTTTCTATTTTAGTCGCAATGTAATTTAGTTTGGTTGAGAATAAA
CTTTGATGTTGATGTTTTGATAGGATGATTGAGCTGATAAGTCAGCTTATCCATGTGTACAAGCA
ATGTTTGAATAATCCCAATGCTGATTAGTGGGGTTAGTTGAATA
Found at i:14875581 original size:20 final size:20
Alignment explanation
Indices: 14875556--14875594 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
14875546 CAGTCTTATG
* *
14875556 AATAGTAGGGTCAAGTCATA
1 AATAGTAGAGTCAAATCATA
14875576 AATAGTAGAGTCAAATCAT
1 AATAGTAGAGTCAAATCAT
14875595 GAACAGTGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.26
Consensus pattern (20 bp):
AATAGTAGAGTCAAATCATA
Found at i:14876047 original size:31 final size:31
Alignment explanation
Indices: 14876011--14876079 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
14876001 TTTGGGCTAA
*
14876011 GACTAAAATTTAAAAATTTAAAAAGTATAAG
1 GACTAAAATTTAAAAATTCAAAAAGTATAAG
**
14876042 GACTAAAATTTACTAATTCAAAAAGTATAAG
1 GACTAAAATTTAAAAATTCAAAAAGTATAAG
14876073 GACTAAA
1 GACTAAA
14876080 GTTGATCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (31 bp):
GACTAAAATTTAAAAATTCAAAAAGTATAAG
Found at i:14876232 original size:19 final size:20
Alignment explanation
Indices: 14876191--14876235 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
14876181 ATTTTTGTCA
**
14876191 ATAAAGTAATTAATGTAGCG
1 ATAAAGTAATTAATCAAGCG
*
14876211 ATAAA-TAATTAATCAAGTG
1 ATAAAGTAATTAATCAAGCG
14876230 ATAAAG
1 ATAAAG
14876236 AGACTTGTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 16 0.76
20 5 0.24
ACGTcount: A:0.51, C:0.04, G:0.16, T:0.29
Consensus pattern (20 bp):
ATAAAGTAATTAATCAAGCG
Found at i:14876411 original size:72 final size:72
Alignment explanation
Indices: 14876326--14876470 Score: 272
Period size: 72 Copynumber: 2.0 Consensus size: 72
14876316 CTTGTTAAAA
*
14876326 AAAATTGATTAGAGTTGTAATATAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
1 AAAATTGATTAGAGTTGTAATACAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
14876391 GAGGTTT
66 GAGGTTT
*
14876398 AAAATTGATTAGAGTTGTAATGCAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
1 AAAATTGATTAGAGTTGTAATACAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
14876463 GAGGTTT
66 GAGGTTT
14876470 A
1 A
14876471 GTATCCAAGA
Statistics
Matches: 71, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.33, C:0.06, G:0.21, T:0.39
Consensus pattern (72 bp):
AAAATTGATTAGAGTTGTAATACAGTTTGTTATTTGTTTAATCTGCAATTCACAGTAATGGAGAA
GAGGTTT
Found at i:14876867 original size:59 final size:60
Alignment explanation
Indices: 14876746--14876866 Score: 160
Period size: 59 Copynumber: 2.0 Consensus size: 60
14876736 TCAAAAAAGA
*
14876746 TTTCCTTTTATTTTCCCTCCCAAAATTTTTACTTCTCCCAAACCTCCCTCAAAACTTTTTT
1 TTTCCTTTTATTTT-CCTCCCAAAACTTTTACTTCTCCCAAACCTCCCTCAAAACTTTTTT
* * *
14876807 TTTCCTTTTGTTTT-CTCCCAAAACTTTTACTTCCTCCTAAA-CT-GC-CAAAACTTTTTT
1 TTTCCTTTTATTTTCCTCCCAAAACTTTTACTT-CTCCCAAACCTCCCTCAAAACTTTTTT
14876864 TTT
1 TTT
14876867 TCAAACTTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
57 15 0.27
58 1 0.02
59 19 0.35
60 7 0.13
61 13 0.24
ACGTcount: A:0.21, C:0.30, G:0.02, T:0.48
Consensus pattern (60 bp):
TTTCCTTTTATTTTCCTCCCAAAACTTTTACTTCTCCCAAACCTCCCTCAAAACTTTTTT
Found at i:14878693 original size:23 final size:24
Alignment explanation
Indices: 14878663--14878717 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
14878653 ATGCGAGACA
14878663 CTCATTTACC-CCTTCTTTTCTTC
1 CTCATTTACCTCCTTCTTTTCTTC
* *
14878686 CTCATTTACCTCTTTTTTTTCTTC
1 CTCATTTACCTCCTTCTTTTCTTC
14878710 CTCATTTA
1 CTCATTTA
14878718 TTGCCTTTAC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
23 10 0.34
24 19 0.66
ACGTcount: A:0.11, C:0.33, G:0.00, T:0.56
Consensus pattern (24 bp):
CTCATTTACCTCCTTCTTTTCTTC
Found at i:14879346 original size:49 final size:48
Alignment explanation
Indices: 14879289--14879385 Score: 176
Period size: 49 Copynumber: 2.0 Consensus size: 48
14879279 CCCGGAATGG
*
14879289 CCCAAATATATTATGTTATAAAAGTTAATTAATATAATTAAACCTATTA
1 CCCAAATATATTATGTTATAAAAATTAATT-ATATAATTAAACCTATTA
14879338 CCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATTA
1 CCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATTA
14879386 ATTATATAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
48 18 0.38
49 29 0.62
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.39
Consensus pattern (48 bp):
CCCAAATATATTATGTTATAAAAATTAATTATATAATTAAACCTATTA
Found at i:14879408 original size:24 final size:21
Alignment explanation
Indices: 14879361--14879409 Score: 62
Period size: 24 Copynumber: 2.2 Consensus size: 21
14879351 TGTTATAAAA
*
14879361 ATTAATTATATAATTAAACCT
1 ATTAATTATATAATCAAACCT
14879382 ATTAATTATATAACAATCAAACCT
1 ATTAATTATAT---AATCAAACCT
14879406 ATTA
1 ATTA
14879410 CTCAAAACCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
21 11 0.46
24 13 0.54
ACGTcount: A:0.49, C:0.12, G:0.00, T:0.39
Consensus pattern (21 bp):
ATTAATTATATAATCAAACCT
Found at i:14892517 original size:78 final size:78
Alignment explanation
Indices: 14892388--14892553 Score: 314
Period size: 78 Copynumber: 2.1 Consensus size: 78
14892378 ATAATTTCCA
*
14892388 TTTTGGCTGTGGATAGATAGCAAGTCCCCACAGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
1 TTTTGGCTGTGGACAGATAGCAAGTCCCCACAGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
14892453 GATGAAACCTACT
66 GATGAAACCTACT
*
14892466 TTTTGGCTGTGGACAGATAGCAAGTCCCCACGGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
1 TTTTGGCTGTGGACAGATAGCAAGTCCCCACAGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
14892531 GATGAAACCTACT
66 GATGAAACCTACT
14892544 TTTTGGCTGT
1 TTTTGGCTGT
14892554 AGAATTTTAT
Statistics
Matches: 86, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 86 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31
Consensus pattern (78 bp):
TTTTGGCTGTGGACAGATAGCAAGTCCCCACAGTTGGAATCTACGTTACCAGTAAAATTCTTGCA
GATGAAACCTACT
Found at i:14902571 original size:13 final size:13
Alignment explanation
Indices: 14902553--14902580 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
14902543 TTTTTTATGT
14902553 CTATAAATATAGA
1 CTATAAATATAGA
14902566 CTATAAATATAGA
1 CTATAAATATAGA
14902579 CT
1 CT
14902581 TTGGAGAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.50, C:0.11, G:0.07, T:0.32
Consensus pattern (13 bp):
CTATAAATATAGA
Found at i:14921790 original size:13 final size:13
Alignment explanation
Indices: 14921772--14921848 Score: 118
Period size: 13 Copynumber: 5.9 Consensus size: 13
14921762 AGTTCTTCAT
*
14921772 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
14921785 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
*
14921798 TGTTTTTCAGAAG
1 TGCTTTTCAGAAG
*
14921811 TGCTTTTGAGAAG
1 TGCTTTTCAGAAG
14921824 TGCTTTTCAGAAG
1 TGCTTTTCAGAAG
*
14921837 TGCTTTTGAGAA
1 TGCTTTTCAGAA
14921849 ATTTGAATGT
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 58 1.00
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.40
Consensus pattern (13 bp):
TGCTTTTCAGAAG
Found at i:14921826 original size:39 final size:39
Alignment explanation
Indices: 14921772--14921848 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
14921762 AGTTCTTCAT
*
14921772 TGCTTTTGAGAAGTGCTTTTCAGAAGTGTTTTTCAGAAG
1 TGCTTTTGAGAAGTGCTTTTCAGAAGTGCTTTTCAGAAG
*
14921811 TGCTTTTGAGAAGTGCTTTTCAGAAGTGCTTTTGAGAA
1 TGCTTTTGAGAAGTGCTTTTCAGAAGTGCTTTTCAGAA
14921849 ATTTGAATGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.23, C:0.10, G:0.26, T:0.40
Consensus pattern (39 bp):
TGCTTTTGAGAAGTGCTTTTCAGAAGTGCTTTTCAGAAG
Found at i:14922581 original size:21 final size:24
Alignment explanation
Indices: 14922548--14922594 Score: 64
Period size: 22 Copynumber: 2.1 Consensus size: 24
14922538 CCCTTTGATT
*
14922548 AAATGTTTGAGAA-TATAAAA-CA
1 AAATATTTGAGAATTATAAAAGCA
14922570 AAATATTT-AGAATTATAAAAGCA
1 AAATATTTGAGAATTATAAAAGCA
14922593 AA
1 AA
14922595 CATAGTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 14 0.64
23 4 0.18
ACGTcount: A:0.57, C:0.04, G:0.11, T:0.28
Consensus pattern (24 bp):
AAATATTTGAGAATTATAAAAGCA
Found at i:14923521 original size:29 final size:29
Alignment explanation
Indices: 14923489--14923559 Score: 142
Period size: 29 Copynumber: 2.4 Consensus size: 29
14923479 TTAAATTCAG
14923489 TTATCAATAAATTAAACCAAATCAATCAT
1 TTATCAATAAATTAAACCAAATCAATCAT
14923518 TTATCAATAAATTAAACCAAATCAATCAT
1 TTATCAATAAATTAAACCAAATCAATCAT
14923547 TTATCAATAAATT
1 TTATCAATAAATT
14923560 CGCAATCTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 42 1.00
ACGTcount: A:0.51, C:0.15, G:0.00, T:0.34
Consensus pattern (29 bp):
TTATCAATAAATTAAACCAAATCAATCAT
Found at i:14930492 original size:33 final size:28
Alignment explanation
Indices: 14930420--14930501 Score: 94
Period size: 27 Copynumber: 2.8 Consensus size: 28
14930410 GAATAACAAG
14930420 GGGGTTGCTAAGTGCTGATT-CCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCCCAA
* *
14930447 GGGGTTGGTAAGTGCTGATTCCCCGACTCATT
1 GGGGTTGCTAAGTGCTGATTCCCC--C-CA-A
14930479 GGTGGTTGCTAAGTGCTGATTCC
1 GG-GGTTGCTAAGTGCTGATTCC
14930502 ACCATATCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
27 19 0.41
28 3 0.07
30 1 0.02
31 2 0.04
32 2 0.04
33 19 0.41
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.30
Consensus pattern (28 bp):
GGGGTTGCTAAGTGCTGATTCCCCCCAA
Found at i:14930571 original size:76 final size:76
Alignment explanation
Indices: 14930445--14930736 Score: 404
Period size: 76 Copynumber: 3.8 Consensus size: 76
14930435 TGATTCCCCC
* * *
14930445 AAGGGGTTGGTAAGTGCTGATTCCCCGACTCATTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
14930510 CTTGAATGTGA
66 CTTGAATGTGA
* * * * **
14930521 AAGGGGTTGTTAAGTGTTGATTCCCTGACTCTTTGGTGGTTGCTAAGTGCTGATTCCACCATATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
14930586 CTTGAATGTGA
66 CTTGAATGTGA
* * * * *
14930597 AAGGGGTTGCTCAGTGTTAATTCCTCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCTTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
*
14930662 CTTGAATGTAAAAA
66 CTTGAATGT---GA
*
14930676 AAGGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGAATCCACC
1 AA-GGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACC
14930737 GATAACGGTT
Statistics
Matches: 193, Mismatches: 19, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
76 137 0.71
79 3 0.02
80 53 0.27
ACGTcount: A:0.22, C:0.20, G:0.26, T:0.32
Consensus pattern (76 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGAATCACTGGTGGTTGCTAAGTGCTGATTCCACCATATC
CTTGAATGTGA
Found at i:14941653 original size:27 final size:27
Alignment explanation
Indices: 14941617--14941687 Score: 88
Period size: 27 Copynumber: 2.6 Consensus size: 27
14941607 CCTAACGGAA
* *
14941617 GTATTATGGTAATTTTACCCATCGAGG
1 GTATTTTGGTAATTTTACCCATCAAGG
* *
14941644 GTATTTTGGTAATTTTACCTATTAAGG
1 GTATTTTGGTAATTTTACCCATCAAGG
**
14941671 GTATTTCAGTAATTTTA
1 GTATTTTGGTAATTTTA
14941688 ACGACCTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.45
Consensus pattern (27 bp):
GTATTTTGGTAATTTTACCCATCAAGG
Found at i:14943596 original size:23 final size:22
Alignment explanation
Indices: 14943570--14943621 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 22
14943560 CCTTCACATG
*
14943570 ATTATATTATATTTATAAAATAA
1 ATTATATT-TATTAATAAAATAA
*
14943593 ATTAATATTTATTAATAATATAA
1 ATT-ATATTTATTAATAAAATAA
*
14943616 AATATA
1 ATTATA
14943622 ACAATATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
22 3 0.12
23 17 0.68
24 5 0.20
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (22 bp):
ATTATATTTATTAATAAAATAA
Found at i:14943627 original size:28 final size:27
Alignment explanation
Indices: 14943583--14943644 Score: 65
Period size: 28 Copynumber: 2.3 Consensus size: 27
14943573 ATATTATATT
* **
14943583 TATAAAATAAATTAATATTTATTAATAA
1 TATAAAATAAATCAATATAAATTAA-AA
14943611 TATAAAATATAA-CAATATAAATTAAAA
1 TATAAAATA-AATCAATATAAATTAAAA
14943638 T-TAAAAT
1 TATAAAAT
14943645 TTATCTTTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
26 6 0.20
27 3 0.10
28 19 0.63
29 2 0.07
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (27 bp):
TATAAAATAAATCAATATAAATTAAAA
Found at i:14945130 original size:32 final size:32
Alignment explanation
Indices: 14945068--14945127 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
14945058 ACATGTACTC
***
14945068 TTTTAAAATTTTAGAATTTTTTATTTTTTATT
1 TTTTAAAATTTTAGAATTTAGAATTTTTTATT
14945100 TTTTAAAATTTTA-AATTTAGAATTTTTT
1 TTTTAAAATTTTAGAATTTAGAATTTTTT
14945128 TATAATTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
31 12 0.48
32 13 0.52
ACGTcount: A:0.32, C:0.00, G:0.03, T:0.65
Consensus pattern (32 bp):
TTTTAAAATTTTAGAATTTAGAATTTTTTATT
Found at i:14952560 original size:19 final size:19
Alignment explanation
Indices: 14952536--14952572 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
14952526 CGTAAGTTTT
14952536 CTTACTTAAGTACCTTAAA
1 CTTACTTAAGTACCTTAAA
*
14952555 CTTACTTAAGTACTTTAA
1 CTTACTTAAGTACCTTAA
14952573 GTGATAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.35, C:0.19, G:0.05, T:0.41
Consensus pattern (19 bp):
CTTACTTAAGTACCTTAAA
Found at i:14954101 original size:30 final size:30
Alignment explanation
Indices: 14954067--14954128 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
14954057 ACTTATTTTA
14954067 TTGTTAATTTTGTTATTATTTTA-AAGACAT
1 TTGTTAATTTTGTTATTATTTTAGAAG-CAT
14954097 TTGTTAATTTTGTTATTATTTTAGAAGCAT
1 TTGTTAATTTTGTTATTATTTTAGAAGCAT
14954127 TT
1 TT
14954129 ACTTGTTAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 28 0.90
31 3 0.10
ACGTcount: A:0.27, C:0.03, G:0.11, T:0.58
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAGAAGCAT
Found at i:14954687 original size:18 final size:21
Alignment explanation
Indices: 14954650--14954687 Score: 55
Period size: 18 Copynumber: 2.0 Consensus size: 21
14954640 GTTGGGTTGG
14954650 ATTAAGTTTATATCATGTTTA
1 ATTAAGTTTATATCATGTTTA
14954671 ATTAA-TTTAT-T-ATGTTT
1 ATTAAGTTTATATCATGTTT
14954688 GGATATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
18 6 0.35
19 1 0.06
20 5 0.29
21 5 0.29
ACGTcount: A:0.32, C:0.03, G:0.08, T:0.58
Consensus pattern (21 bp):
ATTAAGTTTATATCATGTTTA
Found at i:14975078 original size:13 final size:13
Alignment explanation
Indices: 14975060--14975084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14975050 TATTTTAATA
14975060 TTATTTTGTGTGT
1 TTATTTTGTGTGT
14975073 TTATTTTGTGTG
1 TTATTTTGTGTG
14975085 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:14976712 original size:41 final size:41
Alignment explanation
Indices: 14976667--14976766 Score: 139
Period size: 41 Copynumber: 2.4 Consensus size: 41
14976657 TTAGCGCTTT
*
14976667 GCAGGCTTATTGCCGGTGAAACACTTCAGACTAAATGTCTA
1 GCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTCTA
* * * *
14976708 GCAGGCTTAATACCGGTGAAATATTTCAGACTATATGTCTA
1 GCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTCTA
14976749 GCAGGC-TAAGTGCCGGTG
1 GCAGGCTTAA-TGCCGGTG
14976767 TACTGAATCA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
40 3 0.06
41 49 0.94
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (41 bp):
GCAGGCTTAATGCCGGTGAAACACTTCAGACTAAATGTCTA
Found at i:14980921 original size:24 final size:25
Alignment explanation
Indices: 14980891--14980946 Score: 89
Period size: 24 Copynumber: 2.3 Consensus size: 25
14980881 TAAAAATTAT
14980891 TTATTTTTTAT-AATTTTTAAATAA
1 TTATTTTTTATGAATTTTTAAATAA
*
14980915 TTA-TTTTTATGAATTTTTTAATAA
1 TTATTTTTTATGAATTTTTAAATAA
14980939 TTATTTTT
1 TTATTTTT
14980947 AAAAAATGTC
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
23 7 0.24
24 18 0.62
25 4 0.14
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (25 bp):
TTATTTTTTATGAATTTTTAAATAA
Found at i:14980929 original size:13 final size:12
Alignment explanation
Indices: 14980895--14980947 Score: 56
Period size: 12 Copynumber: 4.5 Consensus size: 12
14980885 AATTATTTAT
14980895 TTTTTATAATT-
1 TTTTTATAATTA
**
14980906 TTTAAATAATTA
1 TTTTTATAATTA
14980918 TTTTTATGAATT-
1 TTTTTAT-AATTA
*
14980930 TTTTAATAATTA
1 TTTTTATAATTA
14980942 TTTTTA
1 TTTTTA
14980948 AAAAATGTCA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
11 13 0.39
12 16 0.48
13 4 0.12
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (12 bp):
TTTTTATAATTA
Found at i:14988690 original size:21 final size:22
Alignment explanation
Indices: 14988659--14988700 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
14988649 CAATTTCCAA
* *
14988659 TTTTATATTTTTAATCTTCAAG
1 TTTTATATTTTCAATCCTCAAG
14988681 TTTTA-ATTTTCAATCCTCAA
1 TTTTATATTTTCAATCCTCAA
14988701 TTATTTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.29, C:0.14, G:0.02, T:0.55
Consensus pattern (22 bp):
TTTTATATTTTCAATCCTCAAG
Found at i:14990517 original size:63 final size:63
Alignment explanation
Indices: 14990448--14990566 Score: 141
Period size: 63 Copynumber: 1.9 Consensus size: 63
14990438 GCACACACAT
* * * * * *
14990448 TCATTCCCCACATTATCACCTTTAGTACTAGTTTATTTTATACAA-CTACCACAACACGTACAA
1 TCATTCCCCACATCAACACATTTAGCACCAGTTTATTTTACACAAGC-ACCACAACACGTACAA
***
14990511 TCATTCCTTGCATCAACACATTTAGCACCAGTTTATTTTACACAAGCACCACAACA
1 TCATTCCCCACATCAACACATTTAGCACCAGTTTATTTTACACAAGCACCACAACA
14990567 TGCCCCATCA
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
63 45 0.98
64 1 0.02
ACGTcount: A:0.34, C:0.29, G:0.06, T:0.31
Consensus pattern (63 bp):
TCATTCCCCACATCAACACATTTAGCACCAGTTTATTTTACACAAGCACCACAACACGTACAA
Found at i:14990577 original size:63 final size:63
Alignment explanation
Indices: 14990468--14990592 Score: 153
Period size: 63 Copynumber: 2.0 Consensus size: 63
14990458 CATTATCACC
* * * * *
14990468 TTTAGTACTAGTTTATTTTATACAACTACCACAACACGTACAATCATTCCTTGCATCAACACA
1 TTTAGCACCAGTTTATTTTACACAACTACCACAACACGCACAATCATTCCCTGCATCAACACA
* * * *
14990531 TTTAGCACCAGTTTATTTTACACAAGC-ACCACAACATGCCCCATCATTCCCTGTATCAACAC
1 TTTAGCACCAGTTTATTTTACACAA-CTACCACAACACGCACAATCATTCCCTGCATCAACAC
14990593 CTCTCCAATG
Statistics
Matches: 52, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
63 51 0.98
64 1 0.02
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (63 bp):
TTTAGCACCAGTTTATTTTACACAACTACCACAACACGCACAATCATTCCCTGCATCAACACA
Found at i:14999427 original size:34 final size:35
Alignment explanation
Indices: 14999375--14999442 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 35
14999365 AGTTCTGGCT
***
14999375 TTTGTGCCTCTTTTGCTTT-ACTGCTTTGCTTTGC
1 TTTGTGCCTCTACAGCTTTCACTGCTTTGCTTTGC
*
14999409 TTTGTGCCTCTACAGCTTTGCTCTGCTTTGCTTT
1 TTTGTGCCTCTACAGCTTT-CACTGCTTTGCTTT
14999443 AGTGATTGCT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 16 0.57
36 12 0.43
ACGTcount: A:0.04, C:0.25, G:0.18, T:0.53
Consensus pattern (35 bp):
TTTGTGCCTCTACAGCTTTCACTGCTTTGCTTTGC
Found at i:15002908 original size:72 final size:72
Alignment explanation
Indices: 15002808--15002979 Score: 269
Period size: 72 Copynumber: 2.4 Consensus size: 72
15002798 AACAACAATG
* * *
15002808 CTAAA-CTAGTTTTATCAATAGTTATTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTTCTT
1 CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTT
15002872 ATTTAT-
66 ATTTATA
* *
15002878 GTATAATCTAGTTTTATTAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
1 CTA-AATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACT
15002943 TATTTATA
65 TATTTATA
15002951 CTAAAT-TAGTTTTATCAATAGTTGTTTAT
1 CTAAATCTAGTTTTATCAATAGTTGTTTAT
15002980 ATATGATTTT
Statistics
Matches: 92, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
70 2 0.02
71 24 0.26
72 64 0.70
73 2 0.02
ACGTcount: A:0.26, C:0.06, G:0.13, T:0.55
Consensus pattern (72 bp):
CTAAATCTAGTTTTATCAATAGTTGTTTATGTTTGGTCTTTGGATATTGAATTTATGTTCTACTT
ATTTATA
Found at i:15013638 original size:42 final size:42
Alignment explanation
Indices: 15013573--15013655 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
15013563 AATATGTGTG
15013573 AAACGTTTGAAATTAAAAAATTTGAACTCTTGTTCTTATCCA
1 AAACGTTTGAAATTAAAAAATTTGAACTCTTGTTCTTATCCA
* *
15013615 AAACGTTTGAAATTCAAACATTTGAACTCTTGTTCTTATCC
1 AAACGTTTGAAATTAAAAAATTTGAACTCTTGTTCTTATCC
15013656 CTTTGAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.39
Consensus pattern (42 bp):
AAACGTTTGAAATTAAAAAATTTGAACTCTTGTTCTTATCCA
Found at i:15021123 original size:19 final size:19
Alignment explanation
Indices: 15021099--15021139 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
15021089 TTATTAATAA
*
15021099 ATTTATTGTTACTATTATT
1 ATTTATTATTACTATTATT
**
15021118 ATTTATTATTGGTATTATT
1 ATTTATTATTACTATTATT
15021137 ATT
1 ATT
15021140 ACACTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.27, C:0.02, G:0.07, T:0.63
Consensus pattern (19 bp):
ATTTATTATTACTATTATT
Found at i:15023559 original size:34 final size:31
Alignment explanation
Indices: 15023506--15023575 Score: 95
Period size: 34 Copynumber: 2.2 Consensus size: 31
15023496 CAATTGAATA
*
15023506 ACAGTTCAGTTCAGTTGGGCCTTTTCCCATT
1 ACAGTTCAGTTCAGTTGGGCCTTATCCCATT
*
15023537 ACAGTATCAGTATCAGTGTGGGCCTTATCTCATT
1 ACAGT-TCAGT-TCAGT-TGGGCCTTATCCCATT
15023571 ACAGT
1 ACAGT
15023576 GATAGTAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
31 5 0.15
32 5 0.15
33 5 0.15
34 19 0.56
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.36
Consensus pattern (31 bp):
ACAGTTCAGTTCAGTTGGGCCTTATCCCATT
Found at i:15023892 original size:27 final size:26
Alignment explanation
Indices: 15023858--15023924 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
15023848 CATAAAGCAT
15023858 ACAGTCATTTTATAACATAGGGGCACA
1 ACAGTCATTTTATAACATA-GGGCACA
** * *
15023885 ACAGTCATTTTACCACGTAGGGCATA
1 ACAGTCATTTTATAACATAGGGCACA
*
15023911 ACAGTTATTTTATA
1 ACAGTCATTTTATA
15023925 TCATTTTGAG
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
26 17 0.52
27 16 0.48
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.31
Consensus pattern (26 bp):
ACAGTCATTTTATAACATAGGGCACA
Found at i:15026695 original size:17 final size:17
Alignment explanation
Indices: 15026673--15026716 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
15026663 TGGTTGTGTT
15026673 TATATA-ATGTGCG-AA
1 TATATATATGTGCGTAA
*
15026688 TATATATATGTGTGTAA
1 TATATATATGTGCGTAA
15026705 TATATATATGTG
1 TATATATATGTG
15026717 GATCGAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 6 0.23
16 6 0.23
17 14 0.54
ACGTcount: A:0.36, C:0.02, G:0.18, T:0.43
Consensus pattern (17 bp):
TATATATATGTGCGTAA
Found at i:15026992 original size:41 final size:41
Alignment explanation
Indices: 15026930--15027099 Score: 277
Period size: 41 Copynumber: 4.1 Consensus size: 41
15026920 GTTTGGAATT
* *
15026930 GGTGAATTGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
*
15026971 GGTGATTTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
15027012 GGTGATATGAATCAGGTTATAAACCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
* *
15027053 GGTGATCTGAATCAGGCTATAAGCCTAGCAGGCTAAGTGCC
1 GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
15027094 GGTGAT
1 GGTGAT
15027100 CCGAATATGA
Statistics
Matches: 120, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 120 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (41 bp):
GGTGATTTGAATCAGGCTATAAACCTAGCAGGCTAAGTGCC
Found at i:15027035 original size:82 final size:82
Alignment explanation
Indices: 15026937--15027099 Score: 317
Period size: 82 Copynumber: 2.0 Consensus size: 82
15026927 ATTGGTGAAT
*
15026937 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATTTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
15027002 GCTAAGTGCCGGTGATA
66 GCTAAGTGCCGGTGATA
15027019 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
1 TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
15027084 GCTAAGTGCCGGTGAT
66 GCTAAGTGCCGGTGAT
15027100 CCGAATATGA
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (82 bp):
TGAATCAGGTTATAAACCTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGCCTAGCAG
GCTAAGTGCCGGTGATA
Found at i:15027227 original size:36 final size:36
Alignment explanation
Indices: 15027180--15027248 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
15027170 GAATGTATGA
15027180 ACATTGTTTCAAGATGTTGATGAGTATATAATTATT
1 ACATTGTTTCAAGATGTTGATGAGTATATAATTATT
15027216 ACATTGTTTCAAGATGTTGATGAGTATATAATT
1 ACATTGTTTCAAGATGTTGATGAGTATATAATT
15027249 GTTCGAATTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.43
Consensus pattern (36 bp):
ACATTGTTTCAAGATGTTGATGAGTATATAATTATT
Found at i:15027363 original size:31 final size:34
Alignment explanation
Indices: 15027322--15027439 Score: 113
Period size: 37 Copynumber: 3.5 Consensus size: 34
15027312 TTATGTGTGC
*
15027322 ATATTTATGCATTCGGCATAGGTGGATATA-TAT
1 ATATGTATGCATTCGGCATAGGTGGATATAGTAT
* *
15027355 -T-TGTATGCATTCGGCATAGATAGATATAAGTGTAT
1 ATATGTATGCATTCGGCATAGGTGGATAT-A--GTAT
*
15027390 ATATGTATGCATTCGGCATAGGTGGGTATAAGTGA-
1 ATATGTATGCATTCGGCATAGGTGGATAT-AGT-AT
15027425 ATATG--TGCATTCGGC
1 ATATGTATGCATTCGGC
15027440 CTTTATAGTT
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
31 23 0.32
32 2 0.03
33 10 0.14
35 10 0.14
36 2 0.03
37 25 0.35
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.36
Consensus pattern (34 bp):
ATATGTATGCATTCGGCATAGGTGGATATAGTAT
Found at i:15027391 original size:37 final size:37
Alignment explanation
Indices: 15027350--15027439 Score: 116
Period size: 37 Copynumber: 2.5 Consensus size: 37
15027340 TAGGTGGATA
*
15027350 TATATTTGTATGCATTCGGCATAGATAGATATAAGTG
1 TATATATGTATGCATTCGGCATAGATAGATATAAGTG
* * *
15027387 TATATATGTATGCATTCGGCATAGGTGGGTATAAGTG
1 TATATATGTATGCATTCGGCATAGATAGATATAAGTG
15027424 -A-ATATG--TGCATTCGGC
1 TATATATGTATGCATTCGGC
15027440 CTTTATAGTT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
33 10 0.20
35 5 0.10
36 1 0.02
37 33 0.67
ACGTcount: A:0.29, C:0.10, G:0.26, T:0.36
Consensus pattern (37 bp):
TATATATGTATGCATTCGGCATAGATAGATATAAGTG
Found at i:15035022 original size:34 final size:30
Alignment explanation
Indices: 15034984--15035049 Score: 78
Period size: 30 Copynumber: 2.1 Consensus size: 30
15034974 ATCGAGGAAG
*
15034984 TAAAACAAAGAAAGAAAAGAAGAAAGGAAAAAAA
1 TAAAA-AAA-AAA-AAAAGAAG-AAGAAAAAAAA
*
15035018 TAAAAAAATAAAAAAGAAGAAGAAAAAAAA
1 TAAAAAAAAAAAAAAGAAGAAGAAAAAAAA
15035048 TA
1 TA
15035050 TATACAGACG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
30 12 0.40
31 8 0.27
32 2 0.07
33 3 0.10
34 5 0.17
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.06
Consensus pattern (30 bp):
TAAAAAAAAAAAAAAGAAGAAGAAAAAAAA
Found at i:15038515 original size:42 final size:42
Alignment explanation
Indices: 15038434--15038515 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
15038424 ATGCGTTGAG
* * * * *
15038434 TATTGAATACTTTTCCAATTAAATTTATTGATTAGGAATGAA
1 TATTAAATACTTTTCCAATCAAATTCATTGACTAAGAATGAA
15038476 TATTAAATACTTTTCCAATCAAATTCAGTT-ACTAAGAATG
1 TATTAAATACTTTTCCAATCAAATTCA-TTGACTAAGAATG
15038516 GCAACTTACT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.39, C:0.11, G:0.10, T:0.40
Consensus pattern (42 bp):
TATTAAATACTTTTCCAATCAAATTCATTGACTAAGAATGAA
Found at i:15039280 original size:44 final size:44
Alignment explanation
Indices: 15039213--15039299 Score: 147
Period size: 44 Copynumber: 2.0 Consensus size: 44
15039203 ACCTCTTTCA
* *
15039213 TTTTTTCTCTTATTATCATTCTAATTTGAAACTTAAATTTGATT
1 TTTTTTCTCTTATTACCACTCTAATTTGAAACTTAAATTTGATT
*
15039257 TTTTTTCTTTTATTACCACTCTAATTTGAAACTTAAATTTGAT
1 TTTTTTCTCTTATTACCACTCTAATTTGAAACTTAAATTTGAT
15039300 ATATTCAAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.28, C:0.13, G:0.05, T:0.55
Consensus pattern (44 bp):
TTTTTTCTCTTATTACCACTCTAATTTGAAACTTAAATTTGATT
Found at i:15049159 original size:41 final size:40
Alignment explanation
Indices: 15049114--15049215 Score: 141
Period size: 41 Copynumber: 2.5 Consensus size: 40
15049104 TGATTCAGTA
15049114 CACCGGCACTTAGCCTGCTAGACATATAGTCTGAAATATTT
1 CACCGGCA-TTAGCCTGCTAGACATATAGTCTGAAATATTT
* * *
15049155 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCATT-AGCCTGCTAGACATATAGTCTGAAATATTT
*
15049196 CACCGGCAATAAGCCTGCTA
1 CACCGGC-ATTAGCCTGCTA
15049216 AGCGCTAAGC
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.04
41 51 0.93
42 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (40 bp):
CACCGGCATTAGCCTGCTAGACATATAGTCTGAAATATTT
Found at i:15049230 original size:41 final size:41
Alignment explanation
Indices: 15049114--15049230 Score: 112
Period size: 41 Copynumber: 2.9 Consensus size: 41
15049104 TGATTCAGTA
* * * * *
15049114 CACCGGCACTTAGCCTGCTAGACA-TATAGTCTGAAATATTT
1 CACCGGCAATAAGCCTGCTAGACACTA-AGCCTGAAGTGTTT
* * * *
15049155 CACCGGCATTAAGCCTGCTAGACATTTAGTCTGAAGTGTTT
1 CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
*
15049196 CACCGGCAATAAGCCTGCTA-AGCGCTAAGCCTGAA
1 CACCGGCAATAAGCCTGCTAGA-CACTAAGCCTGAA
15049231 AATCTCAATT
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
40 1 0.02
41 62 0.97
42 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.26
Consensus pattern (41 bp):
CACCGGCAATAAGCCTGCTAGACACTAAGCCTGAAGTGTTT
Found at i:15050821 original size:13 final size:13
Alignment explanation
Indices: 15050803--15050827 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15050793 CAATCAAATG
15050803 CACACAAAATAAA
1 CACACAAAATAAA
15050816 CACACAAAATAA
1 CACACAAAATAA
15050828 TATTAAAATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:15051085 original size:18 final size:19
Alignment explanation
Indices: 15051062--15051103 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 19
15051052 GGTTTTCTCA
15051062 AAATGGAAATGAAAATG-T
1 AAATGGAAATGAAAATGAT
*
15051080 AAATGGAAATGAAGATGAT
1 AAATGGAAATGAAAATGAT
15051099 AAATG
1 AAATG
15051104 ATTCATTTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 16 0.73
19 6 0.27
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (19 bp):
AAATGGAAATGAAAATGAT
Found at i:15056083 original size:17 final size:17
Alignment explanation
Indices: 15056029--15056082 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
15056019 TAAAGAACTG
*
15056029 AATTAAATATAAAAAAT
1 AATTAAATATAATAAAT
* *
15056046 AATTAAAAATAAT-TAT
1 AATTAAATATAATAAAT
* *
15056062 CATTTAATATAATAAAT
1 AATTAAATATAATAAAT
15056079 AATT
1 AATT
15056083 TTCGATTGAA
Statistics
Matches: 28, Mismatches: 8, Indels: 2
0.74 0.21 0.05
Matches are distributed among these distances:
16 12 0.43
17 16 0.57
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (17 bp):
AATTAAATATAATAAAT
Found at i:15056254 original size:23 final size:22
Alignment explanation
Indices: 15056218--15056279 Score: 58
Period size: 21 Copynumber: 2.8 Consensus size: 22
15056208 GCCTTGTATA
*
15056218 AAAATATGTA-ATAAATAAATTT
1 AAAATATTTATATAAATAAA-TT
*
15056240 AAAATGA-TTATAT-AATTAATT
1 AAAAT-ATTTATATAAATAAATT
15056261 AAAATATTTATATATAATA
1 AAAATATTTATATA-AATA
15056280 TGATACATAT
Statistics
Matches: 32, Mismatches: 3, Indels: 9
0.73 0.07 0.20
Matches are distributed among these distances:
20 1 0.03
21 13 0.41
22 12 0.38
23 6 0.19
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.40
Consensus pattern (22 bp):
AAAATATTTATATAAATAAATT
Found at i:15061651 original size:21 final size:21
Alignment explanation
Indices: 15061627--15061666 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
15061617 CGTTTGATAT
15061627 GGAAAATGAAGAAA-AAGTGAA
1 GGAAAATG-AGAAACAAGTGAA
*
15061648 GGAAAGTGAGAAACAAGTG
1 GGAAAATGAGAAACAAGTG
15061667 GAGAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.55, C:0.03, G:0.33, T:0.10
Consensus pattern (21 bp):
GGAAAATGAGAAACAAGTGAA
Found at i:15062121 original size:11 final size:11
Alignment explanation
Indices: 15062105--15062130 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15062095 TTTTGTCTTA
15062105 CGCTGCAGTAT
1 CGCTGCAGTAT
15062116 CGCTGCAGTAT
1 CGCTGCAGTAT
15062127 CGCT
1 CGCT
15062131 ACAATATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.15, C:0.31, G:0.27, T:0.27
Consensus pattern (11 bp):
CGCTGCAGTAT
Found at i:15062627 original size:29 final size:30
Alignment explanation
Indices: 15062587--15062774 Score: 156
Period size: 30 Copynumber: 6.4 Consensus size: 30
15062577 CTATCTAATT
*
15062587 ATGAAAAGGGATGGTGACGACCATC-AACA
1 ATGAAAAGGGATGGTGACGACCATCGAAAA
* *
15062616 ATGAAAAGGGATAGTGACGACCACCGAAAA
1 ATGAAAAGGGATGGTGACGACCATCGAAAA
* ** * **
15062646 ATGAAAAGGGATAGCT-TTGACTATCGAATT
1 ATGAAAAGGGAT-GGTGACGACCATCGAAAA
* * * * *
15062676 GTGAAAAGGGA-GCT-TCGACTATC-AAATT
1 ATGAAAAGGGATGGTGACGACCATCGAAA-A
* *
15062704 ATGAAAAGGGACGGTGACAACCATC-AAAA
1 ATGAAAAGGGATGGTGACGACCATCGAAAA
15062733 ATGAAAAGGGATGGTGACGACCATC-AAATA
1 ATGAAAAGGGATGGTGACGACCATCGAAA-A
15062763 ATGAAAAGGGAT
1 ATGAAAAGGGAT
15062775 AGCTTTTGCT
Statistics
Matches: 131, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
27 2 0.02
28 22 0.17
29 51 0.39
30 55 0.42
31 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.26, T:0.18
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACGACCATCGAAAA
Found at i:15062696 original size:28 final size:28
Alignment explanation
Indices: 15062646--15062714 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
15062636 CCACCGAAAA
* *
15062646 ATGAAAAGGGATAGCTTTGACTATCGAATT
1 ATGAAAAGGG--AGCTTCGACTATCAAATT
*
15062676 GTGAAAAGGGAGCTTCGACTATCAAATT
1 ATGAAAAGGGAGCTTCGACTATCAAATT
15062704 ATGAAAAGGGA
1 ATGAAAAGGGA
15062715 CGGTGACAAC
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 26 0.74
30 9 0.26
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.25
Consensus pattern (28 bp):
ATGAAAAGGGAGCTTCGACTATCAAATT
Found at i:15062798 original size:117 final size:118
Alignment explanation
Indices: 15062557--15062802 Score: 345
Period size: 117 Copynumber: 2.1 Consensus size: 118
15062547 AGAAACAAGA
* * * * *
15062557 ATGAAAAGGGATAGCCTCGGCTATCTAATTATGAAAAGGGATGGTGACGACCATCAACAATGAAA
1 ATGAAAAGGGA-AGCCTCGACTATCAAATTATGAAAAGGGACGGTGACAACCATCAAAAATGAAA
*
15062622 AGGGATAGTGACGACCACCGAAAAATGAAAAGGGATAGCTTTGACTATCGAATT
65 AGGGATAGTGACGACCACCGAAAAATGAAAAGGGATAGCTTTGACTATCGAACT
* *
15062676 GTGAAAAGGG-AGCTTCGACTATCAAATTATGAAAAGGGACGGTGACAACCATCAAAAATGAAAA
1 ATGAAAAGGGAAGCCTCGACTATCAAATTATGAAAAGGGACGGTGACAACCATCAAAAATGAAAA
* * *
15062740 GGGATGGTGACGACCATC-AAATAATGAAAAGGGATAGCTTTTG-CTATCGAGCT
66 GGGATAGTGACGACCACCGAAA-AATGAAAAGGGATAGC-TTTGACTATCGAACT
15062793 ATGAAAAGGG
1 ATGAAAAGGG
15062803 TTGGGACAAC
Statistics
Matches: 113, Mismatches: 12, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
116 3 0.03
117 97 0.86
118 4 0.04
119 9 0.08
ACGTcount: A:0.40, C:0.14, G:0.26, T:0.20
Consensus pattern (118 bp):
ATGAAAAGGGAAGCCTCGACTATCAAATTATGAAAAGGGACGGTGACAACCATCAAAAATGAAAA
GGGATAGTGACGACCACCGAAAAATGAAAAGGGATAGCTTTGACTATCGAACT
Found at i:15063212 original size:17 final size:17
Alignment explanation
Indices: 15063190--15063224 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
15063180 CATGTATAGG
*
15063190 TGTTTTGGTTGATGTTA
1 TGTTTTGGCTGATGTTA
15063207 TGTTTTGGCTGATGTTA
1 TGTTTTGGCTGATGTTA
15063224 T
1 T
15063225 AGCCATTATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.03, G:0.29, T:0.57
Consensus pattern (17 bp):
TGTTTTGGCTGATGTTA
Found at i:15065306 original size:20 final size:19
Alignment explanation
Indices: 15065278--15065347 Score: 70
Period size: 20 Copynumber: 3.5 Consensus size: 19
15065268 TAGGCATTGA
*
15065278 AGTGTAATCAGGAGCACCGG
1 AGTGCAATCAGG-GCACCGG
*
15065298 AGTGCAATCAGGGGTACCGG
1 AGTGCAATCA-GGGCACCGG
*
15065318 AGTGCAGTCAAGGGCA-CGG
1 AGTGCAATC-AGGGCACCGG
15065337 AAGTGCAATCA
1 -AGTGCAATCA
15065348 TATACATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
19 4 0.10
20 35 0.83
21 3 0.07
ACGTcount: A:0.30, C:0.20, G:0.36, T:0.14
Consensus pattern (19 bp):
AGTGCAATCAGGGCACCGG
Found at i:15069565 original size:17 final size:17
Alignment explanation
Indices: 15069539--15069800 Score: 215
Period size: 17 Copynumber: 15.4 Consensus size: 17
15069529 ACCTATGACA
15069539 ATATGCGAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15069556 ATATGTGAGCCGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15069573 ATATACGAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15069590 ATATGTGAGCTATGTTT
1 ATATGCGAGCTGTGTTT
* *
15069607 GTATGCG-GGTAGT-TTT
1 ATATGCGAGCT-GTGTTT
* *
15069623 ATTATTCGAGCTATGTTT
1 A-TATGCGAGCTGTGTTT
15069641 ATATGCG-GCTGGTGTTT
1 ATATGCGAGCT-GTGTTT
*
15069658 ATATGCAAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
*
15069675 ATATGCTAGCTGTGTTT
1 ATATGCGAGCTGTGTTT
* * *
15069692 ATATGCCAGCAGTGTAT
1 ATATGCGAGCTGTGTTT
* *
15069709 ATATGCAAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15069726 ATATGCTAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
* *
15069743 ATATGCAAGTTGTGTTT
1 ATATGCGAGCTGTGTTT
**** * *
15069760 ATAAAATATCTATGTTT
1 ATATGCGAGCTGTGTTT
* *
15069777 ATATGTGAACTGTGTTT
1 ATATGCGAGCTGTGTTT
15069794 ATATGCG
1 ATATGCG
15069801 GGTTGTGTCT
Statistics
Matches: 194, Mismatches: 45, Indels: 12
0.77 0.18 0.05
Matches are distributed among these distances:
16 8 0.04
17 177 0.91
18 9 0.05
ACGTcount: A:0.22, C:0.09, G:0.24, T:0.44
Consensus pattern (17 bp):
ATATGCGAGCTGTGTTT
Found at i:15073121 original size:35 final size:36
Alignment explanation
Indices: 15073082--15073150 Score: 97
Period size: 35 Copynumber: 1.9 Consensus size: 36
15073072 CCTAATTTCT
*
15073082 AAAAATCCTAACCCTAACCC-TAACAAAAT-TAAAAA
1 AAAAACCCTAACCCTAACCCTTAA-AAAATCTAAAAA
*
15073117 AAAAACCCTAACTCTAACCCTTAAAAAATCTAAA
1 AAAAACCCTAACCCTAACCCTTAAAAAATCTAAA
15073151 GAAAGAGTGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 23 0.77
36 7 0.23
ACGTcount: A:0.55, C:0.26, G:0.00, T:0.19
Consensus pattern (36 bp):
AAAAACCCTAACCCTAACCCTTAAAAAATCTAAAAA
Found at i:15073587 original size:27 final size:27
Alignment explanation
Indices: 15073547--15073618 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
15073537 ATATGTTTGG
*
15073547 TGGTGCCAATGTCATAAGTGGCGCCAA
1 TGGTGCCAATGTCATAAGTGGCACCAA
* * * *
15073574 TTGTGCCCATGTCATAGGTGGCACCAG
1 TGGTGCCAATGTCATAAGTGGCACCAA
*
15073601 TGGTGCCTATGTCATAAG
1 TGGTGCCAATGTCATAAG
15073619 CAGTACTAGT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.26
Consensus pattern (27 bp):
TGGTGCCAATGTCATAAGTGGCACCAA
Found at i:15077473 original size:50 final size:51
Alignment explanation
Indices: 15077419--15077553 Score: 123
Period size: 50 Copynumber: 2.5 Consensus size: 51
15077409 ACCCCAAATG
15077419 TTTTTTTCCTTTCTCCTTTCTTTCTCTTCTATATTCT-CTACTA-TTCTCTT
1 TTTTTTTCC-TTCTCCTTTCTTTCTCTTCTATATTCTACTACTATTTCTCTT
* * * * * *
15077469 TTTTTCTCCCTTCTCC-TTCTCTTATCTTCTCTGTTCTACTAGTATCTTTTTCTT
1 TTTTT-TTCCTTCTCCTTTCT-TTCTCTTCTATATTCTACTACTA--TTTCTCTT
15077523 TCTTTTTTACCTTCTCCTTCTCTTTCTCTTC
1 T-TTTTTT-CCTTCTCCTT-TCTTTCTCTTC
15077554 CTCTATTTTC
Statistics
Matches: 67, Mismatches: 8, Indels: 14
0.75 0.09 0.16
Matches are distributed among these distances:
49 4 0.06
50 24 0.36
51 8 0.12
54 8 0.12
55 12 0.18
56 8 0.12
57 3 0.04
ACGTcount: A:0.07, C:0.30, G:0.01, T:0.61
Consensus pattern (51 bp):
TTTTTTTCCTTCTCCTTTCTTTCTCTTCTATATTCTACTACTATTTCTCTT
Found at i:15084956 original size:22 final size:23
Alignment explanation
Indices: 15084929--15084973 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
15084919 AGGTGTCTAC
15084929 AAATCAAATC-TCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
*
15084951 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
15084974 TATCATATCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 9 0.43
23 12 0.57
ACGTcount: A:0.47, C:0.18, G:0.04, T:0.31
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:15084978 original size:22 final size:22
Alignment explanation
Indices: 15084926--15084983 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 22
15084916 GAAAGGTGTC
*
15084926 TACAAATCAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
15084947 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
15084970 TACATATCATATCT
1 TACAAATCATATCT
15084984 ACGATTTTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.58
23 11 0.33
ACGTcount: A:0.43, C:0.19, G:0.03, T:0.34
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:15097145 original size:6 final size:6
Alignment explanation
Indices: 15097134--15097170 Score: 65
Period size: 6 Copynumber: 6.0 Consensus size: 6
15097124 AGCGGAAATG
15097134 GGATTA GGATTA GGATTA GGATTA GGATTA TGGATTA
1 GGATTA GGATTA GGATTA GGATTA GGATTA -GGATTA
15097171 AGGGTAATAA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 24 0.80
7 6 0.20
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (6 bp):
GGATTA
Found at i:15100413 original size:14 final size:12
Alignment explanation
Indices: 15100391--15100432 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
15100381 TTCTCAACTC
15100391 ATAATTCTCATAA
1 ATAATTCTCA-AA
15100404 ATAATGTCTCAAA
1 ATAAT-TCTCAAA
*
15100417 ATAATTCAC-AA
1 ATAATTCTCAAA
15100428 ATAAT
1 ATAAT
15100433 CATGCATTGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 7 0.26
12 3 0.11
13 12 0.44
14 5 0.19
ACGTcount: A:0.50, C:0.14, G:0.02, T:0.33
Consensus pattern (12 bp):
ATAATTCTCAAA
Found at i:15102196 original size:12 final size:11
Alignment explanation
Indices: 15102170--15102210 Score: 50
Period size: 10 Copynumber: 3.7 Consensus size: 11
15102160 AACAAATCAG
15102170 TAAAGTAAA-AA
1 TAAA-TAAATAA
15102181 TAAATAATATAA
1 TAAATAA-ATAA
15102193 TAAAT-AATAA
1 TAAATAAATAA
15102203 TAAATAAA
1 TAAATAAA
15102211 ATAAAGCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 12 0.44
11 8 0.30
12 7 0.26
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (11 bp):
TAAATAAATAA
Found at i:15102205 original size:22 final size:23
Alignment explanation
Indices: 15102170--15102214 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 23
15102160 AACAAATCAG
*
15102170 TAAAGTAAAAATAAATAATATAA
1 TAAAGTAAAAATAAATAAAATAA
*
15102193 TAAA-TAATAATAAATAAAATAA
1 TAAAGTAAAAATAAATAAAATAA
15102215 AGCAAAGGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (23 bp):
TAAAGTAAAAATAAATAAAATAA
Found at i:15102522 original size:30 final size:30
Alignment explanation
Indices: 15102483--15102569 Score: 113
Period size: 30 Copynumber: 2.9 Consensus size: 30
15102473 ATGGCCTCGG
*
15102483 ACACGCCCGTGTGTCCAGGCTGTGTGGCAC
1 ACACGCCCGTGTGTCCAGACTGTGTGGCAC
* *
15102513 ACACTCCCGTGTGTCTAGACTGTGTGGCAC
1 ACACGCCCGTGTGTCCAGACTGTGTGGCAC
*
15102543 ACACGGCCGTGTG-CCAGATCGTGTGTG
1 ACACGCCCGTGTGTCCAGA-C-TGTGTG
15102570 TTTTCCTTCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
29 4 0.08
30 39 0.80
31 6 0.12
ACGTcount: A:0.15, C:0.30, G:0.32, T:0.23
Consensus pattern (30 bp):
ACACGCCCGTGTGTCCAGACTGTGTGGCAC
Found at i:15105771 original size:13 final size:14
Alignment explanation
Indices: 15105740--15105771 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
15105730 GTAAATAAAA
15105740 TAAAAATTAGAACG
1 TAAAAATTAGAACG
15105754 TAAAAATTA-AAC-
1 TAAAAATTAGAACG
15105766 TAAAAA
1 TAAAAA
15105772 CAAAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 3 0.17
14 9 0.50
ACGTcount: A:0.66, C:0.06, G:0.06, T:0.22
Consensus pattern (14 bp):
TAAAAATTAGAACG
Found at i:15111584 original size:7 final size:7
Alignment explanation
Indices: 15111574--15111599 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
15111564 TACATGGTAA
15111574 CCTTGAG
1 CCTTGAG
15111581 CCTTGAG
1 CCTTGAG
15111588 CCTTGAG
1 CCTTGAG
15111595 CCTTG
1 CCTTG
15111600 TTGAGATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.31, G:0.27, T:0.31
Consensus pattern (7 bp):
CCTTGAG
Found at i:15113114 original size:15 final size:16
Alignment explanation
Indices: 15113094--15113135 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
15113084 CCCGGCCCGG
15113094 TCATAT-TAATTTTTT
1 TCATATATAATTTTTT
*
15113109 TCATATATTATTTTTT
1 TCATATATAATTTTTT
* *
15113125 TAAAATATAAT
1 TCATATATAAT
15113136 ACATCAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 6 0.27
16 16 0.73
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.60
Consensus pattern (16 bp):
TCATATATAATTTTTT
Found at i:15117666 original size:50 final size:51
Alignment explanation
Indices: 15117605--15118377 Score: 216
Period size: 50 Copynumber: 15.6 Consensus size: 51
15117595 CGTAACTTTT
* *
15117605 GGAAAGTAAGATTCACCATCGTGGCTTTAATCTTTTTAACTGCAATGTC-G
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* ** * * * *
15117655 GGAAAGCAAGATTCACCGTTGTGGCTTTAATCTGCTTCACTGCACTGCCTG
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * * * * *
15117706 AGAATGTAAGATTCGCTG-CTGTGGCTTTAGTCTTTTTAACCGCAAAGTCAG
1 GGAAAGCAAGATTCACCGTC-GTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * ** ** **
15117757 GG-AGGCCAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCG-CTT
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * * *
15117806 GGAAGGTAAGATTCATCGTTGTGACTTTAATCCTTTT-A--GC--TG-C--
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * * * *
15117849 ---AA-CATGATTCACCGTTGTGGCTTTAATCTCTCT-ACTGCACTGGCTG
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * ** ** * * * ** *
15117895 AGAGAGTGAGATTCGTCATTGTGACTTTAATCCCTTTAACTGTAATGTC-G
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * ** *
15117945 GGAAAGTAAGATTCACCGTTGTGGCTTTAGTCTGCTTCACT---ATGTTACCAG
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATG-T--CAG
* * * *
15117996 GG-AAGTAACACTCACCG-CTGTGGCTTTAGTCTTTTTAACTGCAATGTC-G
1 GGAAAGCAAGATTCACCGTC-GTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * *** ** *
15118045 GGGAAGTAAGATTCACCGTCGTGACTTTAATCTGTTCCCCTGC-ATCACCTG
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAAT-GTCAG
* * * * * * * *
15118096 GG-AAGTAAGAATCGCTGTTGTAGCTTTAATATTTTTAACTGCAATGTCAT
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * *** * * *
15118146 GG-AGGCAATATTCACCGTTGTGGCTTTAAT-TTGTTCCGCTTCACTG-CTTG
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTT-TTTAACTGCAATGTC-AG
* * * * *
15118196 GG-AGGTAAGATTCGCTG-CTGTAGCTTTAATCTTTTTAACTGCAATGTC-G
1 GGAAAGCAAGATTCACCGTC-GTGGCTTTAATCTTTTTAACTGCAATGTCAG
* * * * ** *
15118245 GGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCT-GCTGC-ATCACTTG
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCT-TTTTAACTGCAATGTC-AG
* * * * * *
15118296 GG-GAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCAG
1 GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
15118346 GG-AAGCAAGATTCACCGAT-GTGGCTTTAATCT
1 GGAAAGCAAGATTCACCG-TCGTGGCTTTAATCT
15118378 GTTCCACTAC
Statistics
Matches: 520, Mismatches: 161, Indels: 84
0.68 0.21 0.11
Matches are distributed among these distances:
39 25 0.05
40 1 0.00
41 2 0.00
43 2 0.00
44 1 0.00
45 2 0.00
47 5 0.01
48 1 0.00
49 22 0.04
50 388 0.75
51 67 0.13
52 1 0.00
53 3 0.01
ACGTcount: A:0.23, C:0.20, G:0.23, T:0.34
Consensus pattern (51 bp):
GGAAAGCAAGATTCACCGTCGTGGCTTTAATCTTTTTAACTGCAATGTCAG
Found at i:15117917 original size:89 final size:89
Alignment explanation
Indices: 15117765--15117932 Score: 225
Period size: 89 Copynumber: 1.9 Consensus size: 89
15117755 AGGGAGGCCA
* *
15117765 GATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGCTTGGAAGGTAAGATTCATCGTTGTGA
1 GATTCACCGTTGTGGCTTTAATCTGCTCCACTGCACCGCTTGGAAGGTAAGATTCATCATTGTGA
*
15117830 CTTTAATCCTTTTAGCTGCAACAT
66 CTTTAATCCCTTTAGCTGCAACAT
* * * *
15117854 GATTCACCGTTGTGGCTTTAATCT-CTCTACTGCACTGGC-T-GAGAGAGTGAGATTCGTCATTG
1 GATTCACCGTTGTGGCTTTAATCTGCTCCACTGCAC-CGCTTGGA-AG-GTAAGATTCATCATTG
15117916 TGACTTTAATCCCTTTA
63 TGACTTTAATCCCTTTA
15117933 ACTGTAATGT
Statistics
Matches: 69, Mismatches: 7, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
87 2 0.03
88 12 0.17
89 55 0.80
ACGTcount: A:0.21, C:0.22, G:0.21, T:0.36
Consensus pattern (89 bp):
GATTCACCGTTGTGGCTTTAATCTGCTCCACTGCACCGCTTGGAAGGTAAGATTCATCATTGTGA
CTTTAATCCCTTTAGCTGCAACAT
Found at i:15118043 original size:100 final size:98
Alignment explanation
Indices: 15117919--15118382 Score: 498
Period size: 100 Copynumber: 4.7 Consensus size: 98
15117909 GTCATTGTGA
** * * * *
15117919 CTTTAATCCCTTTAACTGTAATGTCGGGAAAGTAAGATTCACCGTTGTGGCTTTAGTCTGCTTCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTG-TTC-
** * * * * * * *
15117984 CTATGTTACCAGGGAAGTAACACTCACCGCTGTGG
64 CCCTGTCACCTGGGAAGTAAGAATCGCTGCTGTAG
* * * *
15118019 CTTTAGTCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGTCGTGACTTTAATCTGTTCCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCC
*
15118084 CTGCATCACCTGGGAAGTAAGAATCGCTGTTGTAG
66 CTG--TCACCTGGGAAGTAAGAATCGCTGCTGTAG
* ** * * * *
15118119 CTTTAATATTTTTAACTGCAATGTCATGGAGGCAATATTCACCGTTGTGGCTTTAATTTGTTCCG
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCC
* *
15118184 CT-TCACTGCTTGGGAGGTAAGATTCGCTGCTGTAG
66 CTGTCAC--C-TGGGAAGTAAGAATCGCTGCTGTAG
* **
15118219 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCTG
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCC
* * * *
15118284 CTGCATCACTTGGGGAGTAAGATTCGCTGTTGTAG
66 CTG--TCACCTGGGAAGTAAGAATCGCTGCTGTAG
* *
15118319 CTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
15118383 ACTACATCGC
Statistics
Matches: 308, Mismatches: 48, Indels: 16
0.83 0.13 0.04
Matches are distributed among these distances:
97 4 0.01
98 3 0.01
99 4 0.01
100 293 0.95
103 4 0.01
ACGTcount: A:0.23, C:0.20, G:0.22, T:0.35
Consensus pattern (98 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCC
CTGTCACCTGGGAAGTAAGAATCGCTGCTGTAG
Found at i:15118231 original size:200 final size:200
Alignment explanation
Indices: 15118012--15118406 Score: 594
Period size: 200 Copynumber: 2.0 Consensus size: 200
15118002 AACACTCACC
* * *
15118012 GCTGTGGCTTTAGTCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGTCGTGACTTTAATC
1 GCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTCGTGACTTTAATC
*
15118077 TGTTCCCCTGCATCACCTGGGAAGTAAGAATCGCTGTTGTAGCTTTAATATTTTTAACTGCAATG
66 TATTCCCCTGCATCACCTGGGAAGTAAGAATCGCTGTTGTAGCTTTAATATTTTTAACTGCAATG
* * * * * * * *
15118142 TCATGGAGGCAATATTCACCGTTGTGGCTTTAATTTGTTCCGCTTCA-CTGCTTGGGAGGTAAGA
131 TCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATC-GCTTGGGAGATAAGA
15118206 TTCGCT
195 TTCGCT
* *
15118212 GCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATC
1 GCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTCGTGACTTTAATC
** * * * *
15118277 TATTCTGCTGCATCACTTGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATG
66 TATTCCCCTGCATCACCTGGGAAGTAAGAATCGCTGTTGTAGCTTTAATATTTTTAACTGCAATG
15118342 TCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATCGCTTGGGAGATAAGAT
131 TCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATCGCTTGGGAGATAAGAT
15118407 CTGTAATTCT
Statistics
Matches: 174, Mismatches: 20, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
200 173 0.99
201 1 0.01
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (200 bp):
GCTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTCGTGACTTTAATC
TATTCCCCTGCATCACCTGGGAAGTAAGAATCGCTGTTGTAGCTTTAATATTTTTAACTGCAATG
TCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTACATCGCTTGGGAGATAAGAT
TCGCT
Found at i:15118396 original size:100 final size:99
Alignment explanation
Indices: 15118018--15118406 Score: 519
Period size: 100 Copynumber: 3.9 Consensus size: 99
15118008 CACCGCTGTG
* * * * *
15118018 GCTTTAGTCTTTTTAACTGCAATGTCGGGGAAGTAAGATTCACCGTCGTGACTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
* * *
15118083 CCTGCATCACCTGGGAAGTAAGAATCGCTGTTGTA
66 GCTGCATCACTTGGG-AGTAAGATTCGCTGTTGTA
* * * * *
15118118 GCTTTAATATTTTTAACTGCAATGTCATGGAGGCAATATTCACCGTTGTGGCTTTAATTTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
* * *
15118183 GCTTCA-CTGCTTGGGAGGTAAGATTCGCTGCTGTA
66 GCTGCATC-ACTTGGGA-GTAAGATTCGCTGTTGTA
* * *
15118218 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTATTCT
1 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
15118283 GCTGCATCACTTGGGGAGTAAGATTCGCTGTTGTA
66 GCTGCATCACTT-GGGAGTAAGATTCGCTGTTGTA
*
15118318 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
* * *
15118383 ACTACATCGCTTGGGAGATAAGAT
66 GCTGCATCACTTGGGAG-TAAGAT
15118407 CTGTAATTCT
Statistics
Matches: 250, Mismatches: 34, Indels: 10
0.85 0.12 0.03
Matches are distributed among these distances:
99 7 0.03
100 238 0.95
101 5 0.02
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (99 bp):
GCTTTAATCTTTTTAACTGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
GCTGCATCACTTGGGAGTAAGATTCGCTGTTGTA
Found at i:15118648 original size:170 final size:171
Alignment explanation
Indices: 15118397--15118764 Score: 524
Period size: 170 Copynumber: 2.1 Consensus size: 171
15118387 CATCGCTTGG
* * *
15118397 GAGATAAGATCTGTAATTCTTCGGTCTATTCCACCGTGATCTCAGGGAGATAAGACCTGATGTGA
1 GAGATAAGATCTGTAATTCTTCGGTCTATTCCACCGTAATCTCAAGGAGATAAGACCTGATGCGA
* *
15118462 TCTACTCTACTGTAACTTCAGAGAGATAAGATCC-TTTAATCTGTTACACTGTAATCTCAAGAAA
66 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTTAATCCGCTACACTGTAATCTCAAGAAA
* * * *
15118526 ATAGGATTACTGGCTT-TATTCTGCTCCGCTGTAATCTCAGA
131 ATAAGATTACTAGCTTCAATT-TACTCCGCTGTAATCTCAGA
*
15118567 GAGATAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAAGGAGATAAGACCTGATGCGA
1 GAGATAAGATCTGTAATTCTTCGGTCTATTCCACCGTAATCTCAAGGAGATAAGACCTGATGCGA
*
15118632 TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAA
66 TCTACTCTACTGTAACTTCAGAGAGATAAGATCC----TTTTAATCCGCTACACTGTAATCTCAA
* * * *
15118697 GGAGATAAGATTACTAGCTTCAATTTACTCCGCTGTAATCTTAGG
127 GAAAATAAGATTACTAGCTTCAATTTACTCCGCTGTAATCTCAGA
15118742 GAGATAAGATTTCTGTAATTCTT
1 GAGATAAGA--TCTGTAATTCTT
15118765 TAATCTGATG
Statistics
Matches: 175, Mismatches: 15, Indels: 9
0.88 0.08 0.05
Matches are distributed among these distances:
170 95 0.54
175 65 0.37
176 3 0.02
177 12 0.07
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (171 bp):
GAGATAAGATCTGTAATTCTTCGGTCTATTCCACCGTAATCTCAAGGAGATAAGACCTGATGCGA
TCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTTAATCCGCTACACTGTAATCTCAAGAAA
ATAAGATTACTAGCTTCAATTTACTCCGCTGTAATCTCAGA
Found at i:15118702 original size:44 final size:42
Alignment explanation
Indices: 15118596--15118707 Score: 104
Period size: 44 Copynumber: 2.6 Consensus size: 42
15118586 TTCGGTCTAT
* *
15118596 TCCACTGTAATCTCAAGGAGATAAGA-CCTGATGCGATCTAC
1 TCCACTGTAATCTCAAGGAGATAAGATCCTGATGCAATCCAC
* * ** *
15118637 TCTACTGTAA-CTTC-AGAGAGATAAGATCCTTTATTTTAATCCGC
1 TCCACTGTAATC-TCAAG-GAGATAAGATCC-TGA-TGCAATCCAC
15118681 TCCACTGTAATCTCAAGGAGATAAGAT
1 TCCACTGTAATCTCAAGGAGATAAGAT
15118708 TACTAGCTTC
Statistics
Matches: 56, Mismatches: 8, Indels: 11
0.75 0.11 0.15
Matches are distributed among these distances:
40 3 0.05
41 20 0.36
42 2 0.04
43 2 0.04
44 26 0.46
45 3 0.05
ACGTcount: A:0.32, C:0.21, G:0.17, T:0.29
Consensus pattern (42 bp):
TCCACTGTAATCTCAAGGAGATAAGATCCTGATGCAATCCAC
Found at i:15118849 original size:44 final size:44
Alignment explanation
Indices: 15118786--15118994 Score: 111
Period size: 44 Copynumber: 4.5 Consensus size: 44
15118776 GATCTACTCT
*
15118786 ACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCC
1 ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCCGCTCC
* * * * * *
15118830 ACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGATGCGATCTACTC
1 ACTGTAATCTCAGGGAGATAAGA-T-C---CTTTATTTTAATCCG--CT-C-C
* **
15118883 TACTATAA-CTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCC
1 -ACTGTAATC-TCAGGGAGATAAGATCCTTTATTTTAATCCGCTCC
* * * * * * *
15118928 ACTATAATCTTAGGGAGATAGGAT--TACTAGCTTCAATCTGCTCC
1 ACTGTAATCTCAGGGAGATAAGATCCT-TTA-TTTTAATCCGCTCC
15118972 ACTGTAATCTCAGGGAGATAAGA
1 ACTGTAATCTCAGGGAGATAAGA
15118995 CCTGTGGCTT
Statistics
Matches: 123, Mismatches: 27, Indels: 30
0.68 0.15 0.17
Matches are distributed among these distances:
42 1 0.01
43 2 0.02
44 68 0.55
45 4 0.03
46 2 0.02
47 2 0.02
49 20 0.16
51 2 0.02
52 2 0.02
53 3 0.02
54 17 0.14
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.32
Consensus pattern (44 bp):
ACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCC
Found at i:15118894 original size:98 final size:98
Alignment explanation
Indices: 15118766--15118967 Score: 368
Period size: 98 Copynumber: 2.1 Consensus size: 98
15118756 GTAATTCTTT
* *
15118766 AATCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 AATCTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCA
*
15118831 CTGTAATCTCAGGGAGATAGGATTACTAGCTTC
66 CTATAATCTCAGGGAGATAGGATTACTAGCTTC
15118864 AATCTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 AATCTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCA
*
15118929 CTATAATCTTAGGGAGATAGGATTACTAGCTTC
66 CTATAATCTCAGGGAGATAGGATTACTAGCTTC
15118962 AATCTG
1 AATCTG
15118968 CTCCACTGTA
Statistics
Matches: 100, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 100 1.00
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33
Consensus pattern (98 bp):
AATCTGATGCGATCTACTCTACTATAACTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCA
CTATAATCTCAGGGAGATAGGATTACTAGCTTC
Found at i:15119212 original size:131 final size:131
Alignment explanation
Indices: 15119026--15119390 Score: 577
Period size: 131 Copynumber: 2.8 Consensus size: 131
15119016 CTTACACTTA
* * * *
15119026 AAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGTAATTTCC
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTCAGGGAAACAAGATCTGTAATTTCT
* * *
15119091 AACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGTTTAAATCTGTTTCCCTACTCTTGGG
66 AACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTATTTCCCTACTCCTGGG
15119156 G
131 G
* * *
15119157 AAGATAAGATTCGCCGTCTTCGATCTACTCTGCTGCTGCTCAGGGAAACAAGATCTGTAATTTCT
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTCAGGGAAACAAGATCTGTAATTTCT
*
15119222 AACCTATTCCACTACTGGTCAGGGACATAGGACGTGTGGCTTAAATCTATTTCCCTACTCCTGGG
66 AACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTATTTCCCTACTCCTGGG
15119287 G
131 G
* *
15119288 AAGAGAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTCAGGAAAACAAGATCTGTAATTTCT
1 AAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTCAGGGAAACAAGATCTGTAATTTCT
** * *
15119353 AACCTATTCCACTGCTGACCAGGGGCATAGGACTTGTG
66 AACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTG
15119391 ATTTCACCGA
Statistics
Matches: 213, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
131 213 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.29
Consensus pattern (131 bp):
AAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTCAGGGAAACAAGATCTGTAATTTCT
AACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTATTTCCCTACTCCTGGG
G
Found at i:15120617 original size:13 final size:13
Alignment explanation
Indices: 15120599--15120649 Score: 75
Period size: 13 Copynumber: 3.8 Consensus size: 13
15120589 AGCCTCTCCG
*
15120599 TTTTCAGTTTTCA
1 TTTTCATTTTTCA
15120612 TTTTCATTTTTCA
1 TTTTCATTTTTCA
*
15120625 TTCTCATTTTTCA
1 TTTTCATTTTTCA
15120638 TTTTTCATTTTT
1 -TTTTCATTTTT
15120650 TTGACTCCGG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
13 24 0.71
14 10 0.29
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.69
Consensus pattern (13 bp):
TTTTCATTTTTCA
Found at i:15120622 original size:20 final size:20
Alignment explanation
Indices: 15120599--15120648 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
15120589 AGCCTCTCCG
15120599 TTTTCAGTTTTCA-TTTTCAT
1 TTTTCA-TTTTCATTTTTCAT
*
15120619 TTTTCATTCTCATTTTTCAT
1 TTTTCATTTTCATTTTTCAT
15120639 TTTTCATTTT
1 TTTTCATTTT
15120649 TTTGACTCCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 5 0.19
20 22 0.81
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTCATTTTCATTTTTCAT
Found at i:15120649 original size:7 final size:7
Alignment explanation
Indices: 15120599--15120649 Score: 70
Period size: 7 Copynumber: 7.6 Consensus size: 7
15120589 AGCCTCTCCG
*
15120599 TTTTCAG
1 TTTTCAT
15120606 TTTTCA-
1 TTTTCAT
15120612 TTTTCAT
1 TTTTCAT
15120619 TTTTCA-
1 TTTTCAT
*
15120625 TTCTCAT
1 TTTTCAT
15120632 TTTTCAT
1 TTTTCAT
15120639 TTTTCAT
1 TTTTCAT
15120646 TTTT
1 TTTT
15120650 TTGACTCCGG
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
6 11 0.28
7 29 0.73
ACGTcount: A:0.14, C:0.16, G:0.02, T:0.69
Consensus pattern (7 bp):
TTTTCAT
Found at i:15128081 original size:100 final size:100
Alignment explanation
Indices: 15127894--15128086 Score: 237
Period size: 100 Copynumber: 1.9 Consensus size: 100
15127884 TCTTGAACTA
* * * * * *
15127894 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGGTGCCCATGCCATGTCCC
1 CCAACGCCATATCCCAGACATGCTCTTACATGGGAGTTCTCATATAGGTGCCAACGCCATGTACC
* *
15127959 AGACATGGTCTTACGAGGGACCTCTCATCTCGGTG
66 AGACATGGTCTTACAAGAGACCTCTCATCTCGGTG
* * * *
15127994 CCAACGCCATGTCCCAGACATGCTCTTACATGGGA-TCTCTCATCTCGGTGCCAACGTCATGTAC
1 CCAACGCCATATCCCAGACATGCTCTTACATGGGAGT-TCTCATATAGGTGCCAACGCCATGTAC
*
15128058 CAGAGATGGTCTTA-AATGAGACCTCTCAT
65 CAGACATGGTCTTACAA-GAGACCTCTCAT
15128087 AATCTCAATA
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
99 2 0.03
100 76 0.97
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (100 bp):
CCAACGCCATATCCCAGACATGCTCTTACATGGGAGTTCTCATATAGGTGCCAACGCCATGTACC
AGACATGGTCTTACAAGAGACCTCTCATCTCGGTG
Found at i:15128084 original size:50 final size:50
Alignment explanation
Indices: 15127894--15128086 Score: 208
Period size: 50 Copynumber: 3.9 Consensus size: 50
15127884 TCTTGAACTA
* * * * ** * *
15127894 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTAAATGGGACCTCTCATCTCGGTG
* * *
15127944 CCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTA-AATGGGACCTCTCATCTCGGTG
* * *
15127994 CCAACGCCATGTCCCAGACATGCTCTTACATGGGATCTCTCATCTCGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTAAATGGGACCTCTCATCTCGGTG
* * * *
15128044 CCAACGTCATGTACCAGAGATGGTCTTAAATGAGACCTCTCAT
1 CCAACGCCATGTCCCAGACATGGTCTTAAATGGGACCTCTCAT
15128087 AATCTCAATA
Statistics
Matches: 121, Mismatches: 20, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.01
50 119 0.98
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (50 bp):
CCAACGCCATGTCCCAGACATGGTCTTAAATGGGACCTCTCATCTCGGTG
Found at i:15129369 original size:19 final size:19
Alignment explanation
Indices: 15129335--15129379 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
15129325 CTAAAATAGT
15129335 AACAA-AATTAACAATA-A
1 AACAACAATTAACAATATA
15129352 AACAACAATTATACAATATA
1 AACAACAATTA-ACAATATA
15129372 AA-AACAAT
1 AACAACAAT
15129380 AATAATAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.20
18 5 0.20
19 12 0.48
20 3 0.12
ACGTcount: A:0.67, C:0.13, G:0.00, T:0.20
Consensus pattern (19 bp):
AACAACAATTAACAATATA
Found at i:15129391 original size:22 final size:22
Alignment explanation
Indices: 15129350--15129391 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
15129340 AATTAACAAT
* *
15129350 AAAACAACAATTATACAATATA
1 AAAACAACAATAATAAAATATA
*
15129372 AAAACAATAATAATAAAATA
1 AAAACAACAATAATAAAATA
15129392 GTAGCAACAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.69, C:0.10, G:0.00, T:0.21
Consensus pattern (22 bp):
AAAACAACAATAATAAAATATA
Found at i:15129403 original size:22 final size:22
Alignment explanation
Indices: 15129378--15129420 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
15129368 TATAAAAACA
15129378 ATAATAATAAAATAGTAGCAAC
1 ATAATAATAAAATAGTAGCAAC
* *
15129400 ATAATAGTAAAATTGTAGCAA
1 ATAATAATAAAATAGTAGCAA
15129421 AATAGTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.56, C:0.07, G:0.12, T:0.26
Consensus pattern (22 bp):
ATAATAATAAAATAGTAGCAAC
Found at i:15130587 original size:74 final size:74
Alignment explanation
Indices: 15130466--15130610 Score: 272
Period size: 74 Copynumber: 2.0 Consensus size: 74
15130456 TATGATACTT
*
15130466 GTATTAACTTTTGTCTAGTATAGTATTTGTGTCTGACAAAAGTTATACATTTTGGTACCTGAAGA
1 GTATTAACTTTTGTCTAGTATAGTACTTGTGTCTGACAAAAGTTATACATTTTGGTACCTGAAGA
15130531 TAATAACTC
66 TAATAACTC
*
15130540 GTATTAACTTTTGTCTAGTATAGTACTTGTGTCTGACAAAAGTTATACATTTTGGTAGCTGAAGA
1 GTATTAACTTTTGTCTAGTATAGTACTTGTGTCTGACAAAAGTTATACATTTTGGTACCTGAAGA
15130605 TAATAA
66 TAATAA
15130611 TGTTTAATTT
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (74 bp):
GTATTAACTTTTGTCTAGTATAGTACTTGTGTCTGACAAAAGTTATACATTTTGGTACCTGAAGA
TAATAACTC
Found at i:15136981 original size:61 final size:60
Alignment explanation
Indices: 15136904--15137029 Score: 148
Period size: 61 Copynumber: 2.1 Consensus size: 60
15136894 TCTTAAATAT
* ** * * * *
15136904 TAAAAGTTCAACAAATTTAGCCCTC-AATGTTTACAAAATTTGTCATTTTAGTTCTAATTC
1 TAAAAGTTCAACAAATTT-GCCCCCTAACATTTACAAAATTTGTCAATCTAGTCCTAACTC
15136964 TAAAAGATTCTAA-AAATTTGCCCCCTAACATTTACAAAATTTGTCAATCTAGTCCTAACTC
1 TAAAAG-TTC-AACAAATTTGCCCCCTAACATTTACAAAATTTGTCAATCTAGTCCTAACTC
15137025 TAAAA
1 TAAAA
15137030 CTTACTATAT
Statistics
Matches: 56, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
60 11 0.20
61 43 0.77
62 2 0.04
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (60 bp):
TAAAAGTTCAACAAATTTGCCCCCTAACATTTACAAAATTTGTCAATCTAGTCCTAACTC
Done.