Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 56 of 173
Found at i:15856325 original size:53 final size:53
Alignment explanation
Indices: 15856268--15856649 Score: 260
Period size: 53 Copynumber: 7.2 Consensus size: 53
15856258 CCTAAACTCT
* **
15856268 TAATTATTTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTAT
1 TAATTATCTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTCC
* * *
15856321 TAATTATTTTAAAT-AAAT-TAAAACTGTAATTTTCCTAA--TA-TAATTTAAAATT-C
1 TAATTATCTTAATTAAAATCT-AAA-T-T-ATTAT-CTAACCTATTAATTT-AAATTCC
* * **
15856374 TAATGATCTTAACTAAAATCTAAAATTATTATCTAACCTATTAATTTAAATTAA
1 TAATTATCTTAATTAAAATCT-AAATTATTATCTAACCTATTAATTTAAATTCC
* * *
15856428 TAATGATCTTAAAT-AGAT-TAGAACTTTAATTATCCTAA--T-TTAATTTAAACTT-C
1 TAATTATCTTAATTAAAATCTA-AA--TT-ATTAT-CTAACCTATTAATTTAAA-TTCC
* * * *
15856481 TAATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAA-TGAAGTTCC
1 TAATTATCTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTCC
* * * *
15856533 TAATTATCTT-ATCT-AAAT-TAAA-AATCTAAT-TATCCTAATTTATTTAAACTCC
1 TAATTATCTTAAT-TAAAATCTAAATTAT-T-ATCTAACCT-ATTAATTTAAATTCC
* * * *
15856585 TAATTATCTTAATTAAAATCTAAATTATTATCCAACCTATCAATTTAAAATCT
1 TAATTATCTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTCC
15856638 TAATTATCTTAA
1 TAATTATCTTAA
15856650 CTAAGGCTCT
Statistics
Matches: 264, Mismatches: 31, Indels: 68
0.73 0.09 0.19
Matches are distributed among these distances:
49 2 0.01
50 13 0.05
51 24 0.09
52 49 0.19
53 99 0.38
54 51 0.19
55 18 0.07
56 8 0.03
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.44
Consensus pattern (53 bp):
TAATTATCTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTCC
Found at i:15856407 original size:107 final size:105
Alignment explanation
Indices: 15856260--15856649 Score: 487
Period size: 107 Copynumber: 3.7 Consensus size: 105
15856250 CTAGGAACCC
* *
15856260 TAAAC-TCTTAATTATTTTAATTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAA
1 TAAACTTC-TAATTATCTTAACTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAA
* * *
15856324 TTATTTTAAATAAATTAAAACTGTAATTTTCCTAATATAATT
65 TTATCTTAAATAAATTAAAACTCTAATTATCCTAAT-TAATT
* * *
15856366 TAAAATTCTAATGATCTTAACTAAAATCTAAAATTATTATCTAACCTATTAATTTAAATTAATAA
1 TAAACTTCTAATTATCTTAACTAAAATCT-AAATTATTATCTAACCTATTAATTTAAATTATTAA
* * * *
15856431 TGATCTTAAATAGATTAGAACTTTAATTATCCTAATTTAATT
65 TTATCTTAAATAAATTAAAACTCTAATTATCCTAA-TTAATT
* * * **
15856473 TAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATCTAATCTATTAA-TGAAGTTCCTAAT
1 TAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAAT
** * *
15856537 TATCTTATCTAAATTAAAAATCTAATTATCCTAATTTATT
66 TATCTTAAATAAATTAAAACTCTAATTATCCTAATTAATT
* * * * * *
15856577 TAAACTCCTAATTATCTTAATTAAAATCTAAATTATTATCCAACCTATCAATTTAAAATCTTAAT
1 TAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAAT
15856642 TATCTTAA
66 TATCTTAA
15856650 CTAAGGCTCT
Statistics
Matches: 244, Mismatches: 36, Indels: 9
0.84 0.12 0.03
Matches are distributed among these distances:
104 51 0.21
105 52 0.21
106 43 0.18
107 97 0.40
108 1 0.00
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.44
Consensus pattern (105 bp):
TAAACTTCTAATTATCTTAACTAAAATCTAAATTATTATCTAACCTATTAATTTAAATTATTAAT
TATCTTAAATAAATTAAAACTCTAATTATCCTAATTAATT
Found at i:15856565 original size:21 final size:20
Alignment explanation
Indices: 15856541--15856612 Score: 54
Period size: 21 Copynumber: 3.2 Consensus size: 20
15856531 CCTAATTATC
15856541 TTATCTAAATTAAAAATCTAA
1 TTATCTAAATT-AAAATCTAA
*
15856562 TTATCCTAATTTATTTAAACTCCTAA
1 TTAT-CTAA---A-TTAAAAT-CTAA
*
15856588 TTATCTTAATTAAAATCTAAA
1 TTATCTAAATTAAAATCT-AA
15856609 TTAT
1 TTAT
15856613 TATCCAACCT
Statistics
Matches: 41, Mismatches: 3, Indels: 14
0.71 0.05 0.24
Matches are distributed among these distances:
20 2 0.05
21 16 0.39
22 5 0.12
25 8 0.20
26 10 0.24
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.44
Consensus pattern (20 bp):
TTATCTAAATTAAAATCTAA
Found at i:15862134 original size:14 final size:14
Alignment explanation
Indices: 15862111--15862150 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
15862101 ACAGAAAAGT
*
15862111 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
15862125 AAATCATTTTACGG
1 AAAACATTTTACAG
15862139 AAAACATTTTAC
1 AAAACATTTTAC
15862151 TGCCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:15862136 original size:34 final size:35
Alignment explanation
Indices: 15862076--15862142 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
15862066 CAAACACCAG
* *
15862076 AAAATATTTTCCAGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
15862111 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
15862143 CATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.45, C:0.13, G:0.10, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:15864224 original size:23 final size:24
Alignment explanation
Indices: 15864166--15864226 Score: 72
Period size: 22 Copynumber: 2.6 Consensus size: 24
15864156 TGCACCTGTA
* *
15864166 TATGAGAGCCCCTTGTGTGGGACG
1 TATGAGATCCCCTTGTATGGGACG
*
15864190 TATAAGAT-CCCTT-TATGGGACG
1 TATGAGATCCCCTTGTATGGGACG
*
15864212 TTTGAGATCCCCTTG
1 TATGAGATCCCCTTG
15864227 GGGGATGTAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
22 14 0.47
23 10 0.33
24 6 0.20
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.31
Consensus pattern (24 bp):
TATGAGATCCCCTTGTATGGGACG
Found at i:15864231 original size:22 final size:22
Alignment explanation
Indices: 15864166--15864240 Score: 69
Period size: 22 Copynumber: 3.3 Consensus size: 22
15864156 TGCACCTGTA
*
15864166 TATGAGAGCCCCTTGTGTGGGACG
1 TATGAGATCCCCTTG-G-GGGACG
* * **
15864190 TATAAGATCCCTTTATGGGACG
1 TATGAGATCCCCTTGGGGGACG
* *
15864212 TTTGAGATCCCCTTGGGGGATG
1 TATGAGATCCCCTTGGGGGACG
15864234 TATGAGA
1 TATGAGA
15864241 GCACCGTAAA
Statistics
Matches: 39, Mismatches: 12, Indels: 2
0.74 0.23 0.04
Matches are distributed among these distances:
22 28 0.72
24 11 0.28
ACGTcount: A:0.21, C:0.17, G:0.32, T:0.29
Consensus pattern (22 bp):
TATGAGATCCCCTTGGGGGACG
Found at i:15865337 original size:9 final size:9
Alignment explanation
Indices: 15865326--15865401 Score: 91
Period size: 9 Copynumber: 8.4 Consensus size: 9
15865316 TTTGTTTAAA
*
15865326 AATTAACCA
1 AATTAACCG
*
15865335 AATTAACCT
1 AATTAACCG
*
15865344 AATTACCCG
1 AATTAACCG
15865353 AATTAACCG
1 AATTAACCG
15865362 AATT-ACCTG
1 AATTAACC-G
*
15865371 AATTAACCA
1 AATTAACCG
*
15865380 AATTACCCG
1 AATTAACCG
15865389 AATTAACCG
1 AATTAACCG
15865398 AATT
1 AATT
15865402 GAATCACTAT
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
8 3 0.05
9 51 0.89
10 3 0.05
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:15865356 original size:18 final size:18
Alignment explanation
Indices: 15865335--15865401 Score: 107
Period size: 18 Copynumber: 3.7 Consensus size: 18
15865325 AAATTAACCA
*
15865335 AATTAACCTAATTACCCG
1 AATTAACCGAATTACCCG
*
15865353 AATTAACCGAATTACCTG
1 AATTAACCGAATTACCCG
*
15865371 AATTAACCAAATTACCCG
1 AATTAACCGAATTACCCG
15865389 AATTAACCGAATT
1 AATTAACCGAATT
15865402 GAATCACTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (18 bp):
AATTAACCGAATTACCCG
Found at i:15865452 original size:6 final size:6
Alignment explanation
Indices: 15865441--15865465 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
15865431 ACTTTTAGAC
15865441 TTTAGT TTTAGT TTTAGT TTTAGT T
1 TTTAGT TTTAGT TTTAGT TTTAGT T
15865466 GTAGAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.68
Consensus pattern (6 bp):
TTTAGT
Found at i:15866657 original size:26 final size:26
Alignment explanation
Indices: 15866624--15866690 Score: 125
Period size: 26 Copynumber: 2.5 Consensus size: 26
15866614 AAACTCTTCT
15866624 AAAAGAAAACTCAAGAGAAATTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
15866650 AAAAGAAAACTCAAGAGAAATTCTTA
1 AAAAGAAAACTCAAGAGAAATTCTTA
15866676 AAAAGAAAAACTCAA
1 AAAAG-AAAACTCAA
15866691 AAAGACTTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
26 31 0.77
27 9 0.22
ACGTcount: A:0.61, C:0.12, G:0.10, T:0.16
Consensus pattern (26 bp):
AAAAGAAAACTCAAGAGAAATTCTTA
Found at i:15871979 original size:20 final size:20
Alignment explanation
Indices: 15871934--15871982 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
15871924 TGGAGCAGAA
*
15871934 ATATCGATATCTTAAGAAAT
1 ATATCGATACCTTAAGAAAT
*
15871954 ACATCGATACCTTAAGAAA-
1 ATATCGATACCTTAAGAAAT
15871973 AGTATCGATA
1 A-TATCGATA
15871983 TTGGATGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.29
Consensus pattern (20 bp):
ATATCGATACCTTAAGAAAT
Found at i:15873562 original size:31 final size:31
Alignment explanation
Indices: 15873527--15873674 Score: 199
Period size: 31 Copynumber: 4.8 Consensus size: 31
15873517 GATAATGCAT
* *
15873527 GGTATGAATATAAAAATATGAATGATTACAG
1 GGTATGAATATGAAAATATGAATGATTACAA
*
15873558 GGTATGTATAT-AAAAGTATGAATGATTACAA
1 GGTATGAATATGAAAA-TATGAATGATTACAA
*
15873589 GGTATGAATATGAAAATATGAATGATTACAG
1 GGTATGAATATGAAAATATGAATGATTACAA
* * * *
15873620 GGCATGACTATGAAAGTATGTATGATTACAA
1 GGTATGAATATGAAAATATGAATGATTACAA
*
15873651 GGTATGAATATGTAAATATGAATG
1 GGTATGAATATGAAAATATGAATG
15873675 GTTGATGCCC
Statistics
Matches: 101, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
30 4 0.04
31 93 0.92
32 4 0.04
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (31 bp):
GGTATGAATATGAAAATATGAATGATTACAA
Found at i:15873605 original size:62 final size:62
Alignment explanation
Indices: 15873527--15873674 Score: 235
Period size: 62 Copynumber: 2.4 Consensus size: 62
15873517 GATAATGCAT
* *
15873527 GGTATGAATATAAAAATATGAATGATTACAGGGTATGTA-TATAAAAGTATGAATGATTACAA
1 GGTATGAATATGAAAATATGAATGATTACAGGGCATG-ACTATAAAAGTATGAATGATTACAA
* *
15873589 GGTATGAATATGAAAATATGAATGATTACAGGGCATGACTATGAAAGTATGTATGATTACAA
1 GGTATGAATATGAAAATATGAATGATTACAGGGCATGACTATAAAAGTATGAATGATTACAA
*
15873651 GGTATGAATATGTAAATATGAATG
1 GGTATGAATATGAAAATATGAATG
15873675 GTTGATGCCC
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
61 1 0.01
62 79 0.99
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (62 bp):
GGTATGAATATGAAAATATGAATGATTACAGGGCATGACTATAAAAGTATGAATGATTACAA
Found at i:15874537 original size:18 final size:19
Alignment explanation
Indices: 15874502--15874537 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
15874492 GTGTTATAAT
*
15874502 ATGTCAAGTTGGAATGTTA
1 ATGTCAAGTTGAAATGTTA
15874521 ATGTCAA-TTGAAATGTT
1 ATGTCAAGTTGAAATGTT
15874538 GTGCAAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.33, C:0.06, G:0.22, T:0.39
Consensus pattern (19 bp):
ATGTCAAGTTGAAATGTTA
Found at i:15880497 original size:21 final size:23
Alignment explanation
Indices: 15880473--15880520 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 23
15880463 GTTGAGAAAA
*
15880473 TTATTT-AATTAAAAATTTA-AT
1 TTATTTAAATTAAAAATTAATAT
*
15880494 TTATTTAAATTAATAATTAATAT
1 TTATTTAAATTAAAAATTAATAT
15880517 TTAT
1 TTAT
15880521 GTTGAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 6 0.26
22 11 0.48
23 6 0.26
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (23 bp):
TTATTTAAATTAAAAATTAATAT
Found at i:15901924 original size:21 final size:21
Alignment explanation
Indices: 15901892--15901948 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
15901882 ACTATTGTTG
* *
15901892 AGAAGAAAGTTGCTGCTGTAGA
1 AGAAG-AAGTTGCTGCTGAAAA
* *
15901914 AGAGGAAGTTGTTGCTGAAAA
1 AGAAGAAGTTGCTGCTGAAAA
15901935 AGAAGAAGTTGCTG
1 AGAAGAAGTTGCTG
15901949 ATGATGAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.37, C:0.07, G:0.33, T:0.23
Consensus pattern (21 bp):
AGAAGAAGTTGCTGCTGAAAA
Found at i:15901969 original size:6 final size:6
Alignment explanation
Indices: 15901958--15902001 Score: 70
Period size: 6 Copynumber: 7.3 Consensus size: 6
15901948 GATGATGAAA
* *
15901958 AAAAAG AAAAAG AAAAAG AAAAAT AAAAAT AAAAAG AAAAAG AA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AA
15902002 GAGAAAGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.84, C:0.00, G:0.11, T:0.05
Consensus pattern (6 bp):
AAAAAG
Found at i:15902453 original size:17 final size:17
Alignment explanation
Indices: 15902431--15902463 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15902421 ATAAGTACAC
*
15902431 ATTGTCATTGCATTTTT
1 ATTGTCATTACATTTTT
15902448 ATTGTCATTACATTTT
1 ATTGTCATTACATTTT
15902464 CATGTTAGTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (17 bp):
ATTGTCATTACATTTTT
Found at i:15906842 original size:3 final size:3
Alignment explanation
Indices: 15906834--15906868 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
15906824 ATGGGGTTTT
15906834 TTG TTG TTG TTG TTG TTG TTG TT- TT- TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
15906869 GGAGGGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (3 bp):
TTG
Found at i:15909619 original size:5 final size:5
Alignment explanation
Indices: 15909609--15909637 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
15909599 GATCCGAATT
15909609 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TTTT
15909638 GCTCTAGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTA
Found at i:15910708 original size:16 final size:16
Alignment explanation
Indices: 15910678--15910715 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
15910668 AATTAATTGA
*
15910678 TTTATT-GTTATTATT
1 TTTATTAGTCATTATT
15910693 TTTATTAGTCATTATT
1 TTTATTAGTCATTATT
*
15910709 ATTATTA
1 TTTATTA
15910716 TTATTAGTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (16 bp):
TTTATTAGTCATTATT
Found at i:15910709 original size:3 final size:3
Alignment explanation
Indices: 15910679--15910721 Score: 50
Period size: 3 Copynumber: 14.0 Consensus size: 3
15910669 ATTAATTGAT
* * *
15910679 TTA TTG TTA TTA TTT TTA TTA GTCA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA
15910722 GTCTTTTATT
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
3 31 0.94
4 2 0.06
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:15910713 original size:22 final size:20
Alignment explanation
Indices: 15910685--15910740 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 20
15910675 TGATTTATTG
15910685 TTATTATTTTTATTAGTCATT
1 TTATTATTTTTATTAGTC-TT
*
15910706 ATTATTATTATTATTAGTCTT
1 -TTATTATTTTTATTAGTCTT
15910727 TTATT-TTTTATATT
1 TTATTATTTT-TATT
15910741 TTTATTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.10
20 9 0.29
21 2 0.06
22 17 0.55
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.68
Consensus pattern (20 bp):
TTATTATTTTTATTAGTCTT
Found at i:15912519 original size:3 final size:3
Alignment explanation
Indices: 15912511--15912545 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
15912501 CATGGGGGTT
15912511 TTG TTG TTG TTG TTG TTG TTG TT- TT- TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
15912546 GCAGGGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (3 bp):
TTG
Found at i:15916291 original size:3 final size:3
Alignment explanation
Indices: 15916283--15916310 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
15916273 CATGGGGTTT
15916283 TTG TTG TTG TTG TTG TTG TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG T
15916311 CCAGGGGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:15917588 original size:20 final size:18
Alignment explanation
Indices: 15917563--15917602 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
15917553 TTAGTGACTA
15917563 AAAAGTAATTCAAATCATAT
1 AAAAGTAATT-AAATC-TAT
*
15917583 AAAAGTCATTAAATCTAT
1 AAAAGTAATTAAATCTAT
15917601 AA
1 AA
15917603 TTTATCCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 5 0.26
20 9 0.47
ACGTcount: A:0.55, C:0.10, G:0.05, T:0.30
Consensus pattern (18 bp):
AAAAGTAATTAAATCTAT
Found at i:15925030 original size:3 final size:3
Alignment explanation
Indices: 15925022--15925056 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
15925012 CATGGGGTTT
15925022 TTG TTG TTG TTG TTG TTG TTG TT- TT- TTG TTG TTG T
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG T
15925057 GCAGGGGAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 4 0.13
3 27 0.87
ACGTcount: A:0.00, C:0.00, G:0.29, T:0.71
Consensus pattern (3 bp):
TTG
Found at i:15926371 original size:38 final size:38
Alignment explanation
Indices: 15926295--15926372 Score: 93
Period size: 38 Copynumber: 2.1 Consensus size: 38
15926285 ACATAAATCG
** *
15926295 ATTTTGATTCTGTATATAAATGTCATTTGTTGGGATTT
1 ATTTTGATTCTGTATATAAATGTCACATGTTGAGATTT
* * * *
15926333 ATTTTGATTGTTTATGTAAATGTCACATGTTGATATTT
1 ATTTTGATTCTGTATATAAATGTCACATGTTGAGATTT
15926371 AT
1 AT
15926373 GTGCAGATCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.26, C:0.05, G:0.17, T:0.53
Consensus pattern (38 bp):
ATTTTGATTCTGTATATAAATGTCACATGTTGAGATTT
Found at i:15929365 original size:30 final size:30
Alignment explanation
Indices: 15929329--15929387 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
15929319 TTTTTTAATA
*
15929329 CACAATTTAATACATAAATCGATTTTGATG
1 CACAATTTAATACATAAATCAATTTTGATG
15929359 CACAATTTAATACATAAATCAATTTTGAT
1 CACAATTTAATACATAAATCAATTTTGAT
15929388 TCTGTATATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.42, C:0.14, G:0.07, T:0.37
Consensus pattern (30 bp):
CACAATTTAATACATAAATCAATTTTGATG
Found at i:15944982 original size:41 final size:40
Alignment explanation
Indices: 15944923--15945207 Score: 322
Period size: 41 Copynumber: 7.0 Consensus size: 40
15944913 TGAGCTTTCG
* *
15944923 GGGCTTTAGCGGCGTTTTTACGGAAGCACTGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTTA-GGAAGCGCCGCTAATGCTCA
* *
15944964 GGGCTTTAGCGGCATTTTTGGGGAAGCGCCGCTAATGCTCA
1 GGGCTTTAGCGGCGTTTTT-AGGAAGCGCCGCTAATGCTCA
* ** *
15945005 GGGCTTTAGCGGCATTTCTGGGGAAGCGCCGCTAATGCTCG
1 GGGCTTTAGCGGCGTTT-TTAGGAAGCGCCGCTAATGCTCA
* *
15945046 GGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAACT-CTTA
1 GGGCTTTAGCGGCGTTTTT-AGGAAGCGCCGCTAA-TGCTCA
*
15945087 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATG-TACA
1 GGGCTTTAGCGGCGTTTTT-AGGAAGCGCCGCTAATGCT-CA
* * **
15945128 GGGATTTAGCGGTGTTTTTTAGGAAGCGCCGCTAATGAACA
1 GGGCTTTAGCGGCG-TTTTTAGGAAGCGCCGCTAATGCTCA
* *
15945169 GGGATTTAGCAGCGTTTTTGAGGAAGCGCCGCTAATGCT
1 GGGCTTTAGCGGCGTTTTT-AGGAAGCGCCGCTAATGCT
15945208 TTATTTTTAG
Statistics
Matches: 214, Mismatches: 21, Indels: 18
0.85 0.08 0.07
Matches are distributed among these distances:
40 8 0.04
41 199 0.93
42 7 0.03
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.28
Consensus pattern (40 bp):
GGGCTTTAGCGGCGTTTTTAGGAAGCGCCGCTAATGCTCA
Found at i:15945064 original size:82 final size:82
Alignment explanation
Indices: 15944923--15945207 Score: 369
Period size: 82 Copynumber: 3.5 Consensus size: 82
15944913 TGAGCTTTCG
* * *
15944923 GGGCTTTAGCGGCGTTTTT-ACGGAAGCACTGCTAATGCTCAGGGCTTTAGCGGCATTTTTGGGG
1 GGGCTTTAGCGGCGTTTTTGA-GGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGG
15944987 AAGCGCCGCTAATGCTCA
65 AAGCGCCGCTAATGCTCA
* * * *
15945005 GGGCTTTAGCGGCATTTCTGGGGAAGCGCCGCTAATGCTCGGGGCTTTAGCGGCGTTTTTGGGGA
1 GGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGGA
*
15945070 AGCGCCGCTAACT-CTTA
66 AGCGCCGCTAA-TGCTCA
* * * **
15945087 GGGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATG-TACAGGGATTTAGCGGTGTTTTTTAGG
1 GGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCT-CAGGGCTTTAGCGGCGTTTTTGGGG
**
15945151 AAGCGCCGCTAATGAACA
65 AAGCGCCGCTAATGCTCA
* *
15945169 GGGATTTAGCAGCGTTTTTGAGGAAGCGCCGCTAATGCT
1 GGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCT
15945208 TTATTTTTAG
Statistics
Matches: 175, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
81 2 0.01
82 171 0.98
83 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.33, T:0.28
Consensus pattern (82 bp):
GGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGGA
AGCGCCGCTAATGCTCA
Found at i:15945139 original size:123 final size:123
Alignment explanation
Indices: 15944920--15945257 Score: 382
Period size: 123 Copynumber: 2.8 Consensus size: 123
15944910 TTCTGAGCTT
* * * *
15944920 TCGGGGCTTTAGCGGCGTTTTT-ACGGAAGCACTGCTAATGCTCAGGGCTTTAGCGGCATTTTTG
1 TCGGGGCTTTAGCGGCGTTTTTGA-GGAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTG
** * * *
15944984 GGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCATTTCTGGGGAAGCGCCGCTAATGC
65 AAGAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTCTGAGGAAGCGCCGCTAATGA
*
15945043 TCGGGGCTTTAGCGGCGTTTTTGGGGAAGCGCCGCTAACT-CTTAGGGCTTTAGCGGCGTTTTTG
1 TCGGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAA-TGCTTAGGGCTTTAGCGGCGTTTTTG
** * *
15945107 AAGAAGCGCCGCTAATG-TACAGGGATTTAGCGGTGTTTTTTAGGAAGCGCCGCTAATGA
65 AAGAAGCGCCGCTAATGCT-CAGGGATTTAGCGGCATTTCTGAGGAAGCGCCGCTAATGA
* * * * **
15945166 ACAGGGATTTAGCAGCGTTTTTGAGGAAGCGCCGCTAATGCTTTA--TTTTTAGCGGCGTTTTCT
1 TCGGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGC-TTAGGGCTTTAGCGGCGTTTT-T
* * *
15945229 -AAAAAGCGCCGCTAATACTCATGGATTTA
64 GAAGAAGCGCCGCTAATGCTCAGGGATTTA
15945258 ATATAATCTA
Statistics
Matches: 184, Mismatches: 24, Indels: 15
0.83 0.11 0.07
Matches are distributed among these distances:
122 40 0.22
123 140 0.76
124 4 0.02
ACGTcount: A:0.20, C:0.20, G:0.31, T:0.29
Consensus pattern (123 bp):
TCGGGGCTTTAGCGGCGTTTTTGAGGAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTTGA
AGAAGCGCCGCTAATGCTCAGGGATTTAGCGGCATTTCTGAGGAAGCGCCGCTAATGA
Found at i:15946235 original size:7 final size:7
Alignment explanation
Indices: 15946225--15946357 Score: 71
Period size: 7 Copynumber: 19.0 Consensus size: 7
15946215 TATGAATTAA
*
15946225 GGTTTAT
1 GGTTTAG
15946232 GGTTTAAG
1 GGTTT-AG
*
15946240 GG-TTGG
1 GGTTTAG
*
15946246 GGTTTAA
1 GGTTTAG
15946253 GGTTTAG
1 GGTTTAG
*
15946260 GGGTTATG
1 GGTTTA-G
15946268 GG-TTAGG
1 GGTTTA-G
15946275 GGTTTAG
1 GGTTTAG
*
15946282 GGTTTAT
1 GGTTTAG
15946289 GG-TTAGG
1 GGTTTA-G
15946296 GGTTTAG
1 GGTTTAG
*
15946303 GGTTTAT
1 GGTTTAG
* *
15946310 GTTTTAT
1 GGTTTAG
* *
15946317 GATTTAA
1 GGTTTAG
15946324 GGTTTAG
1 GGTTTAG
*
15946331 GAG--GAG
1 G-GTTTAG
15946337 GG-TTAGG
1 GGTTTA-G
15946344 GGTTTAG
1 GGTTTAG
15946351 GGTTTAG
1 GGTTTAG
15946358 ATAAATTAGT
Statistics
Matches: 99, Mismatches: 17, Indels: 20
0.73 0.12 0.15
Matches are distributed among these distances:
5 1 0.01
6 10 0.10
7 72 0.73
8 16 0.16
ACGTcount: A:0.17, C:0.00, G:0.41, T:0.41
Consensus pattern (7 bp):
GGTTTAG
Found at i:15946238 original size:14 final size:14
Alignment explanation
Indices: 15946221--15946331 Score: 80
Period size: 14 Copynumber: 7.9 Consensus size: 14
15946211 GGATTATGAA
*
15946221 TTAAGGTTTATGGT
1 TTAAGGTTTAGGGT
* *
15946235 TTAAGGGTTGGGGT
1 TTAAGGTTTAGGGT
*
15946249 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGT
* *
15946263 TTATGGGTTAGGGGT
1 TTAAGGTTTA-GGGT
* *
15946278 TTAGGGTTTATGG-
1 TTAAGGTTTAGGGT
*
15946291 TTAGGGGTTTAGGGT
1 TTA-AGGTTTAGGGT
* * * *
15946306 TTATGTTTTATGAT
1 TTAAGGTTTAGGGT
15946320 TTAAGGTTTAGG
1 TTAAGGTTTAGG
15946332 AGGAGGGTTA
Statistics
Matches: 74, Mismatches: 20, Indels: 6
0.74 0.20 0.06
Matches are distributed among these distances:
13 3 0.04
14 57 0.77
15 14 0.19
ACGTcount: A:0.18, C:0.00, G:0.38, T:0.44
Consensus pattern (14 bp):
TTAAGGTTTAGGGT
Found at i:15946307 original size:21 final size:21
Alignment explanation
Indices: 15946253--15946310 Score: 98
Period size: 21 Copynumber: 2.7 Consensus size: 21
15946243 TGGGGTTTAA
*
15946253 GGTTTAGGGGTTATGGGTTAGG
1 GGTTTAGGGTTTAT-GGTTAGG
15946275 GGTTTAGGGTTTATGGTTAGG
1 GGTTTAGGGTTTATGGTTAGG
15946296 GGTTTAGGGTTTATG
1 GGTTTAGGGTTTATG
15946311 TTTTATGATT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
21 22 0.63
22 13 0.37
ACGTcount: A:0.14, C:0.00, G:0.45, T:0.41
Consensus pattern (21 bp):
GGTTTAGGGTTTATGGTTAGG
Found at i:15950921 original size:43 final size:43
Alignment explanation
Indices: 15950867--15950977 Score: 152
Period size: 43 Copynumber: 2.6 Consensus size: 43
15950857 TTTAATGGCG
* *
15950867 TTTTTGGGGAAAGTC-TCGCTAAAGGTCTTGTTCTTTAGCAGCA
1 TTTTTGGGGAAAG-CGTCGCTAAAGGTCATGATCTTTAGCAGCA
* * * *
15950910 TTTTTGAGGAAAGCGTCGTTAAAGGTCATGATCTTTAGCGGCG
1 TTTTTGGGGAAAGCGTCGCTAAAGGTCATGATCTTTAGCAGCA
15950953 TTTTTGGGGAAAGCGTCGCTAAAGG
1 TTTTTGGGGAAAGCGTCGCTAAAGG
15950978 CCTAAAAAAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
42 1 0.02
43 58 0.98
ACGTcount: A:0.23, C:0.14, G:0.30, T:0.33
Consensus pattern (43 bp):
TTTTTGGGGAAAGCGTCGCTAAAGGTCATGATCTTTAGCAGCA
Found at i:15952728 original size:62 final size:62
Alignment explanation
Indices: 15952656--15952780 Score: 250
Period size: 62 Copynumber: 2.0 Consensus size: 62
15952646 TCTACTGAGT
15952656 TTGTGGTTAAAGTAACGAACCCTTTAGGTCAATATGTGTTAGTTGATAAAGTATGTAAAAAC
1 TTGTGGTTAAAGTAACGAACCCTTTAGGTCAATATGTGTTAGTTGATAAAGTATGTAAAAAC
15952718 TTGTGGTTAAAGTAACGAACCCTTTAGGTCAATATGTGTTAGTTGATAAAGTATGTAAAAAC
1 TTGTGGTTAAAGTAACGAACCCTTTAGGTCAATATGTGTTAGTTGATAAAGTATGTAAAAAC
15952780 T
1 T
15952781 ATCTTTTGAT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 63 1.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.34
Consensus pattern (62 bp):
TTGTGGTTAAAGTAACGAACCCTTTAGGTCAATATGTGTTAGTTGATAAAGTATGTAAAAAC
Found at i:15953560 original size:14 final size:14
Alignment explanation
Indices: 15953537--15953573 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
15953527 GTGGTCCAAT
*
15953537 TGAACTGAACCGAG
1 TGAACCGAACCGAG
15953551 TGAACCGAACCGAG
1 TGAACCGAACCGAG
15953565 TGAACCGAA
1 TGAACCGAA
15953574 TCGACCAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.38, C:0.24, G:0.27, T:0.11
Consensus pattern (14 bp):
TGAACCGAACCGAG
Found at i:15961776 original size:703 final size:702
Alignment explanation
Indices: 15959376--15965173 Score: 6778
Period size: 703 Copynumber: 8.2 Consensus size: 702
15959366 AATTAAAAGG
* * * *
15959376 AGAAGAGGTTGCTTGGGAACTAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATCTTCTGGTA
1 AGAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTA
* * * *
15959441 AGATTTTTAGTGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCATTTTCAATGAAGTTAG
66 AGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCAG
* * * * * * * *
15959506 AATAGTGGCTTCGAGTCCACAAATCTAACAAATCTTTGTATGGTTGAAAGTGTCGAATTCCATTT
131 AATAGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCCATTA
* * *
15959571 TACTGGACAGATG-TGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCAAACAAA
196 TACTGGACA-AAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAA
* **
15959635 AGGTCCAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACATAGATTTG
260 AGGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGATTTG
* * **
15959700 AAAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGAATTTCTAAAAGTATTGCCTTCAAAGAA
325 AAAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGGAAGAA
* * * *
15959765 AGTTCATTGATTTGGCTGAAAAGGAAAGCTTAGTCTCTGGTTTATCGGGGCGTTTGAGATCATTA
390 AGTTC-TTGATTTGGC-CAAAAGGAAAGCTTAGTCTGTGGTTTATCGGGCCGTTTGAGATCATTG
* * *
15959830 AGTGAATTGGGCTAGTAGCTTAACGGTTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTA
453 AGAGAATTGGGCTAGTAGCTTATCGGTTAGCTTTGTCGTCAGAGTTAGAAAAGATTCATAATGTA
* * * **
15959895 TTCTACGTATCAATGTTACAACGGTATCGATCAGATCCTTCACAAGTAATATCCCTTGTTGATGT
518 TTCTACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGT
* * * * * *
15959960 TGAAATTCAACTTGATATGACGTACAGTGAAAAACCGATCAAAATTCTAGCTCGGGTAGTTAAAA
583 TGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTAAAG
* * * * *
15960025 AATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTTTTTGGTAATGACACAGAAT
648 AATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAAT
*** * *
15960080 AGAAGAGGCTATTTGGGAACTAGAAGAAGCTATGAAAGTGTAATACTTGAACTTATTTTCTGGT-
1 AGAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTA
* * * * * *
15960144 AGATTTTTAGGGACAAAAATTACTTTAGGGGGAAAGTTGTAACAACCCGTTTTTAGTGAAGTCAA
66 AGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCAG
* * * * * ** **
15960209 AACAATGGTTTCGGGACTACAAATCTGATGAAGCTTTTTATGGTAAAAAGTGTTAAATTCCATTA
131 AATAGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCCATTA
* * * * * ** * **
15960274 TACTAGATAGAGTTGAGTGAGAAAAAGTTATTAAGTATTGATTTGATTTGAGAAATTGAAGAAAA
196 TACTGGACAAAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAA
* * * * * * * *
15960339 TGTCAAAGTGATACGTGATAGCTTGAAAACTGCTTTGGATCGATAGAAATCTTTCACAAATTTGA
261 GGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGATTTGA
* * ** * * * * * * *
15960404 GAAGAAAAGATACTGAATTTTGAGTCAGCAACACAATATTTTTCAAATTATTTCCATGGAAGAAA
326 AAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAA
* * * *
15960469 GTTCTTTGATTTGGTCGAAAAGGAAAGCTTAGTCCATCCGTGGTTTATTGGGCCATTCGAGATCA
391 GTTC-TTGATTTGG-CCAAAAGGAAAGCTTAGT-C-T--GTGGTTTATCGGGCCGTTTGAGATCA
* * * *
15960534 TTGAGAGAATTGGGCCAGTAGCTTATCGGTTAGGTTT-TCTGTTAGAGTTAGGAAAGATTCATAA
450 TTGAGAGAATTGGGCTAGTAGCTTATCGGTTAGCTTTGTC-GTCAGAGTTAGAAAAGATTCATAA
* * * * * * *
15960598 TGTATTCTATGCATCGATGTTACGACGGTATTGATTAGAACCTTCACATGTAATATCCCCAATTG
514 TGTATTCTACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTG
* * * * * *
15960663 ATGTTGAAATTCAACCTAAAATGACGTACACTGAAGAACCGATCAAAAGTCTAGCTCGGGAAGTT
579 ATGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTT
* * * * **
15960728 AAGGCATTGAGAAATAAAAGTATAGCTTTAGTTTATAGTTCTTTGGCAATGACACATAAT
644 AAAGAATTGAGAAATAAAAGTATAGCTTTAG-TTAAAGTTCTTTGGCAACGACACGGAAT
* * * ** * * *
15960788 AGAAAAGGCTACCTGGAAACTGGAATAAGCTATGAAAGGGCAATACTTGAACTTATTTTCTAGTA
1 AGAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTA
* ** * * *
15960853 AGATTGTCGGGGACGAAAATTCTTTTAGGAGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCGG
66 AGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCAG
* * * * * ** * **
15960918 AATAGTTGTTTCAGGAACACATATCTGACGAATCTTTGTATCATC-AACAATGTCGAATTCTGTT
131 AATAGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCGAA-AGTGTCGAATTCCATT
* * *
15960982 AGACTAGA-AAGAGCTGAGCGAGAAAAAGTTATTTGGTGTTGATTTGATTTGAGAAACCGAAGAA
195 ATACTGGACAA-AGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAA
* * * * *
15961046 AA-GTGCAAAGTGATACGTGATAGCTTGAAAGCAACTTTGGATCGATAGAAATCTTTCACAGATT
259 AAGGT-CAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGATT
*
15961110 TGAAAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCAGAAAGTATTGCCTTGGAAG
323 TGAAAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGGAAG
* ** *
15961175 AAAGTTCTTCGATTTGGCCAAAATGGAAAGCTTAGTATGTGGTTTATCGGGCTATTTGAGGTCAT
388 AAAGTTCTT-GATTTGGCCAAAA-GGAAAGCTTAGTCTGTGGTTTATCGGGCCGTTTGAGATCAT
** *
15961240 TGAGAGAATTGGAATAGTAGCTTAAT-GGTTAGCTTTGTCGTCAGAGGTAGAAAAGATTCATAAT
451 TGAGAGAATTGGGCTAGTAGCTT-ATCGGTTAGCTTTGTCGTCAGAGTTAGAAAAGATTCATAAT
* * ** * *
15961304 GTATTCTATGTATCGATGTTACAACAATATCGATTAGATCCTTCACATGTAATATCCCCAGTTGA
515 GTATTCTACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGA
* * *
15961369 TGTTGACATTCAACCTGATATGACGTACAGTGAAGAATCGATCAGAATTGTAGCTCGAGAAGTTA
580 TGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTA
* * * *
15961434 AAGAATTGAGAAATAAAAGTATA-CTTTAGTTAAAGTTCTCTGGTAATGACACGGGAT
645 AAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAAT
** * * * * *
15961491 AGATTAGGCTGCCTAGGAACCAGAATAAGCTATGAAAGTACAATACTTGAACTTATTTTTTGGGA
1 AGAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTA
* * * * * *
15961556 AGATTTTTGGGGATGAAAATTCCTTTAAGGAGAGAGTTGTAACAGCCCATTTTTAGTGAAGTCAG
66 AGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCAG
* * *
15961621 AACAGTGGTTTCAGGACCACAAATCTGACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCCGTTA
131 AATAGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCCATTA
** * * *
15961686 TACTAAACAAAGCTGCGCGAGAAAATGTTATTCGGTGTTGATTTGATTTGACAAACCGAAGAAAA
196 TACTGGACAAAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAA
* *
15961751 GGTCAAAGTCATACTTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGATTTGA
261 GGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGATTTGA
* ** * * * * * *
15961816 AAAGAGAAGATATTGAATTTTGAGTTGGCGACACATTATTTCTGAATGTATTTCCTTGGAAAAAA
326 AAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAA
* *
15961881 GTTCGTTGATTTGGCCGAAAAGGAAAGCTTAGTCTATGGTTTATCGGGCCGTTTGAGATCATTTA
391 GTTC-TTGATTTGGCC-AAAAGGAAAGCTTAGTCTGTGGTTTATCGGGCCGTTTGAGATCATTGA
** *
15961946 GAGAATTGGGCTAGTAGCTTATCTATTAGCTTTGTCATCAGAGTTAGAAAAGATTCATAATGTAT
454 GAGAATTGGGCTAGTAGCTTATCGGTTAGCTTTGTCGTCAGAGTTAGAAAAGATTCATAATGTAT
* * * *
15962011 TCCACGTATTGATATTACGACGGTATCGATCAGATCCTTCACATGTAATATCCCCAGTTGATGTT
519 TCTACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTT
* * * * * * * *
15962076 GACATTCTACTTGATATGACGTACAGTGAAGAACTGATTAAAATTCTAGCTCGTGAAGCTAAAGA
584 GAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTAAAGA
* * * *
15962141 ATTAAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTCTGGAAACGACACGGAGT
649 ATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAAT
* * * * * *
15962195 AGAAGAGGCTGCCTTGTAGCCGGAAGAAGCTATGAAAGTGCAA-ACTTGAACTTTTTTTCTTGTA
1 AGAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTA
* * * * *
15962259 AGATTTTCAGGGACAAAAATT-CTTGTAGGAGGAGAGTTGTAACAACCCGTTTTCAGTGAAGTCG
66 AGATTTTTAGGGACGAAAATTCCTT-TAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCA
* * * *
15962323 GAAT-GCTGGTTTCGGGACCACAAATTTGAGGAAGCTTTGTATGGTCGAAAGTGTCAAATTCTAT
130 GAATAG-TGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCCAT
* * * * * * *
15962387 TATATTGGA-AAGGGTGTAGCGAGAAAAATTTTTTCGGTGTTGATTTTATTTGAGAAACCAAAGA
194 TATACTGGACAAAGCTG-AGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGA
* * * * *
15962451 GAAGGTCAAAGTGATACGTGATTGCTTGAAAGAAACTTTGGATCGACAAAAATATTACGCAGATT
258 AAAGGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGATT
* * * * * *
15962516 TGAAAATAAAAGATATTGAATTTCAAGTCGGCGACATAATATATCTAAAAGTATTGCCTTGGAAG
323 TGAAAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGGAAG
* * * **
15962581 AAAGTTATGTGATTTGGCCAAAAAGGAAAGCTGAGTCTATGGTTTATTAGGCCGTTTGAGATCAT
388 AAAGTTCT-TGATTTGGCC-AAAAGGAAAGCTTAGTCTGTGGTTTATCGGGCCGTTTGAGATCAT
* * ** * * *
15962646 TGAGGGAATTGGGCCAACAGCTTATCAGTTAGCTTTGCCGTTAGAGTTAGAAAAGATTCATAATG
451 TGAGAGAATTGGGCTAGTAGCTTATCGGTTAGCTTTGTCGTCAGAGTTAGAAAAGATTCATAATG
* * *
15962711 TATT-TCACGTATCGATGTTACGATGGTACCGATCAGATCCTTCACACGTAATATCCCTAGTTGA
516 TATTCT-ACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGA
* * * * * * *
15962775 TGTTGAAATTTATCCTAATATAACGTAAAGTGAAGAACTTG-TCAGAATTTTAGCTC-AGGAAGT
580 TGTTGAAATTCAACCTGATATGACGTACAGTGAAGAAC-CGATCAGAATTCTAGCTCGA-GAAGT
* * * * *
15962838 TAAAGAATTAAGGAATAAAAATATAGCTTTAGTTAAAGTTCTCTGGCAATC-ACATGGAAT
643 TAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAA-CGACACGGAAT
*
15962898 AGAAGAGGCTGCCTGGG-ACCTAGAAGTAA-CTATGAAAGTGCAATACTTGAACTTATTTTCTAG
1 AGAAGAGGCTGCCTGGGAACC-AGAAG-AAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGG
* ** * * * * * * * *
15962961 TAAGATTTTTGGGGACGAAAATTATTTTAGGGGAAAAGTTTTAACAACCCATTTTAAGAGAAAT-
64 TAAGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTC
* ** * * *
15963025 TGAAATAGTGGTTTCAAGACCACATAT-TCGACGAAGATTTGTATGGTCGAAAGTGTCGAATTCG
129 AG-AATAGTGGTTTCGGGACCACAAATCT-GACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCC
* * * * * * *
15963089 ATTATACTGGACAGAGCTGAGTGAGAAAAAGTTATTCAGTGTTGATTTGATGTAAGAAACCTAAT
192 ATTATACTGGACAAAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAG
* * * * *
15963154 AAATGGTCAAAGTGATACGTGAGAGCTT-AAATGCAGCTTTGGATC-AAAAGAAATATTATGCAG
257 AAAAGGTCAAAGTGATACGTGATAGCTTGAAA-GCAGCTTTGGATCGACAA-AAATCTTACGCAG
**
15963217 ATTTGAAAAGAAAAGATATTGAATTTCAAGTCAACAACACAGTATTTCTGAAAGTATTGCCTTGG
320 ATTTGAAAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGG
* * ** *
15963282 AAGAAAGTTCTTCGATTTGGCGGAAAAGGAAAGCTTAGTCTCTGGTTTATTAGGTCGTTTGAGAT
385 AAGAAAGTTCTT-GATTTGGC-CAAAAGGAAAGCTTAGTCTGTGGTTTATCGGGCCGTTTGAGAT
* * * *
15963347 CATTGTGAAAATTGGGCCT-GTAGCTTATCGGTTAGCTTTGCCGTCAGATTTAGAAAAGATTCAT
448 CATTGAGAGAATTGGG-CTAGTAGCTTATCGGTTAGCTTTGTCGTCAGAGTTAGAAAAGATTCAT
* * * * *
15963411 AATGTATTCCACATATCGATGTTAC-ACGGTACCAATTAGATCCTTCACACGTAATATCCCCAGT
512 AATGTATTCTACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGT
*
15963475 TGATGTTGAAATTCAACCAGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCG-GAAA
577 TGATGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAG-AA
15963539 GTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAAT
641 GTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAAT
* * * * * * *
15963601 ACAAGAGGCTTCCTAGGAACCAGAAGAAGCTATAAAAGTCCAATACTTGAATTTATTTTCTAGTA
1 AGAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTA
* * * * * * *
15963666 CGATTTTCAGGGATGAAAATTCCTTTAGGGGGAGAGTTGTAGCA-ACTGATTTTCAGTGAAGTCG
66 AGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCG-TTTTCAGTGAAGTCA
* * * * * * *
15963730 GAATAGTGGTTTTGAGACCACAAATCTGATGAAGCTTGGTATGGTCAAAAGTGTAGAATTCCGTT
130 GAATAGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCCATT
* * * * ** * *
15963795 ATAATGGATAGAGCTGAGTGAGAAAAAGTTATTCAATATTGATTTGATTTAAGAAACCGAAGAAA
195 ATACTGGACAAAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAA
* * * *
15963860 ATGTCAAAGTAATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAGAAATCTTCCGC-GTATTT
260 AGGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAG-ATTT
** * * * * *
15963924 GAAAAGAAAAGATATTGAATTTCTTGTCAGTAACACAATATTTGTGAAAGTATTTCCTTGGAAGA
324 GAAAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGGAAGA
* * *
15963989 AAGTTCTTTGATTTGGCTGAAAAGGAAAGCTTAGTCCGTCCGTGGTTTATTGGGCCATTTGAGAT
389 AAGTTC-TTGATTTGGC-CAAAAGGAAAGCTTAGT-C-T--GTGGTTTATCGGGCCGTTTGAGAT
* * *
15964054 CATTGAGAGAATTGGGCTAGTAGCTTATCGGTTAGGTTT-TCCATTAGAGTTAGAAAAGATTCAT
448 CATTGAGAGAATTGGGCTAGTAGCTTATCGGTTAGCTTTGT-CGTCAGAGTTAGAAAAGATTCAT
* * * *
15964118 AATGTATT-TCACGTATCGATGTTACGACGATACCAATCAGATCCTTCACACATAATATCCCCAG
512 AATGTATTCT-ACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAG
* * *
15964182 TTGATGTTGAAATTCAACCTAATATGACTTATAGTGAAGAACCGATCAGAATTCTAGCTCGAGAA
576 TTGATGTTGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAA
* ** *
15964247 GTTAAAGAATTGAGAAATAAAAGTATAACTTTAGTTAAAGTTCGATGGCAACGACACAGAAT
641 GTTAAAGAATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAAT
* * *
15964309 ACAAGAGGCTGCCTGGGAACCAGAAGAAG-TGATGAAAGTGGAATACTTGAATTTATTTTCTGGT
1 AGAAGAGGCTGCCTGGGAACCAGAAGAAGCT-ATGAAAGTGCAATACTTGAACTTATTTTCTGGT
* * * * * *
15964373 AAGATTTTTAGGAACAAAAATTCCTTTAGGGGGAGAGTTGTAACAGTCGGTTTTCAATAAAGTCA
65 AAGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCA
* *
15964438 GAACAGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCAAAAGTGTCGAATTCCATT
130 GAATAGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCCATT
* * * * * *
15964503 ATACGGGACAAAGTTGAACGACAAAAGGTTATTCGGTGGTGATTTGATTTGAGAAACCGAAGAAA
195 ATACTGGACAAAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAA
* * * *
15964568 AGTTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTAGGACCAACAAAAATCTTACGCAGATTTG
260 AGGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGATTTG
* ** * *
15964633 AAAACAAAAGATATTGAATTTCAAGTCGGTGACACAGTATTTCTGAACGTATTACCTTGGAAGAA
325 AAAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGGAAGAA
* * * * * **
15964698 AGTTCTTCGATTTGGCCGAAAAAGAAAGCTTAGCCCGTCGTTTATCAGGTTGTTTGAGATCATTG
390 AGTTCTT-GATTTGGCC-AAAAGGAAAGCTTAGTCTGTGGTTTATCGGGCCGTTTGAGATCATTG
* * * *
15964763 AGATAATTGGGCTAGTAGCTTATCAGTTAGCTTTGACGTCAGAGTTAGAAAAGATTCATATTGTA
453 AGAGAATTGGGCTAGTAGCTTATCGGTTAGCTTTGTCGTCAGAGTTAGAAAAGATTCATAATGTA
* * * ** * *
15964828 TTCCACGTATCAATGTTATGACAATATTGATCAGATCCTTCACACGTAATATCACCAGTTGATGT
518 TTCTACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGT
* * * * * *
15964893 TGAAATTCAACCTGACATGACGTACAATGTAGAACTGGTCAGAAATCTAGCTCGAGAAGTTAAAG
583 TGAAATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTAAAG
* * * *
15964958 AATTTAGAAATAAAAGTATAACTTTAGTCAAAGTTCTTTGGCAACAACACGGAAT
648 AATTGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAAT
** * *
15965013 AGAAGAGGCTGCCTGGGAACTGGAAGAAGCTATGAAAGTTCAATACTTGAACTTATTTTTTGGTA
1 AGAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTA
** * * * * *
15965078 AGATTTTCGGGGATGAAAATTCCTTTAGGGGGAGAGTTGTAATAGCCCGTTTTTAGTGAAATCAA
66 AGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCAG
*
15965143 AATAGTGGTTTCGGGACCACAAGTCTGACGA
131 AATAGTGGTTTCGGGACCACAAATCTGACGA
15965174 GTAAATTTTA
Statistics
Matches: 4336, Mismatches: 683, Indels: 150
0.84 0.13 0.03
Matches are distributed among these distances:
702 22 0.01
703 1949 0.45
704 938 0.22
705 220 0.05
706 8 0.00
707 313 0.07
708 597 0.14
709 289 0.07
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (702 bp):
AGAAGAGGCTGCCTGGGAACCAGAAGAAGCTATGAAAGTGCAATACTTGAACTTATTTTCTGGTA
AGATTTTTAGGGACGAAAATTCCTTTAGGGGGAGAGTTGTAACAGCCCGTTTTCAGTGAAGTCAG
AATAGTGGTTTCGGGACCACAAATCTGACGAAGCTTTGTATGGTCGAAAGTGTCGAATTCCATTA
TACTGGACAAAGCTGAGCGAGAAAAAGTTATTCGGTGTTGATTTGATTTGAGAAACCGAAGAAAA
GGTCAAAGTGATACGTGATAGCTTGAAAGCAGCTTTGGATCGACAAAAATCTTACGCAGATTTGA
AAAGAAAAGATATTGAATTTCAAGTCGGCAACACAGTATTTCTGAAAGTATTGCCTTGGAAGAAA
GTTCTTGATTTGGCCAAAAGGAAAGCTTAGTCTGTGGTTTATCGGGCCGTTTGAGATCATTGAGA
GAATTGGGCTAGTAGCTTATCGGTTAGCTTTGTCGTCAGAGTTAGAAAAGATTCATAATGTATTC
TACGTATCGATGTTACGACGGTATCGATCAGATCCTTCACACGTAATATCCCCAGTTGATGTTGA
AATTCAACCTGATATGACGTACAGTGAAGAACCGATCAGAATTCTAGCTCGAGAAGTTAAAGAAT
TGAGAAATAAAAGTATAGCTTTAGTTAAAGTTCTTTGGCAACGACACGGAAT
Found at i:15965999 original size:17 final size:17
Alignment explanation
Indices: 15965979--15966016 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
15965969 GGCAAAATGA
15965979 GAATTTTGCA-TAAATAT
1 GAATTTTGCACTAAAT-T
*
15965996 GAATTTTGGACTAAATT
1 GAATTTTGCACTAAATT
15966013 GAAT
1 GAAT
15966017 ACTAGAGGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 14 0.74
18 5 0.26
ACGTcount: A:0.39, C:0.05, G:0.16, T:0.39
Consensus pattern (17 bp):
GAATTTTGCACTAAATT
Found at i:15967692 original size:16 final size:16
Alignment explanation
Indices: 15967673--15967703 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15967663 ATATTAATTT
*
15967673 TATTTAATCTTAAAAA
1 TATTTAATATTAAAAA
15967689 TATTTAATATTAAAA
1 TATTTAATATTAAAA
15967704 CTACAAAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
TATTTAATATTAAAAA
Found at i:15974146 original size:50 final size:50
Alignment explanation
Indices: 15974073--15974268 Score: 221
Period size: 50 Copynumber: 3.8 Consensus size: 50
15974063 TCTTGTACTA
* * **
15974073 CCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* ** *
15974123 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* * *
15974173 CCAACGCCATGTCCCAGACATAGTCTTACATGGGACCTCTCATAACCTCAATGATG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTG
* *
15974229 CCAATTCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
15974269 TTACCCAAAT
Statistics
Matches: 121, Mismatches: 19, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
50 80 0.66
53 2 0.02
56 39 0.32
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
Found at i:15974804 original size:17 final size:17
Alignment explanation
Indices: 15974782--15974820 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
15974772 CATTAGGTAT
15974782 TTTACCGATTATGTCAA
1 TTTACCGATTATGTCAA
*
15974799 TTTACCGATTCTGTCAA
1 TTTACCGATTATGTCAA
15974816 TTTAC
1 TTTAC
15974821 TCGTTTTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.26, C:0.21, G:0.10, T:0.44
Consensus pattern (17 bp):
TTTACCGATTATGTCAA
Found at i:15981338 original size:16 final size:16
Alignment explanation
Indices: 15981319--15981366 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
15981309 TTTATGTTTT
15981319 CTTATTTTTAACTTTA
1 CTTATTTTTAACTTTA
*
15981335 CTTATTTTCTTTACTTTA
1 CTTA-TTT-TTAACTTTA
15981353 -TTATTATTTAACTT
1 CTTATT-TTTAACTT
15981367 ATAAAATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
16 12 0.44
17 7 0.26
18 8 0.30
ACGTcount: A:0.23, C:0.12, G:0.00, T:0.65
Consensus pattern (16 bp):
CTTATTTTTAACTTTA
Found at i:15982341 original size:17 final size:17
Alignment explanation
Indices: 15982316--15982348 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15982306 TTAATAGGAC
*
15982316 TATTTATGAATTTAATG
1 TATTAATGAATTTAATG
15982333 TATTAATGAATTTAAT
1 TATTAATGAATTTAAT
15982349 TTTCAATAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.09, T:0.52
Consensus pattern (17 bp):
TATTAATGAATTTAATG
Found at i:15990912 original size:40 final size:40
Alignment explanation
Indices: 15990856--15991116 Score: 200
Period size: 40 Copynumber: 6.5 Consensus size: 40
15990846 GAGCATAAAT
* * * * *
15990856 AGGGGCACGAAAGTGCATTTAGGGGTACCAAAGTATAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * **
15990896 AGGGGCACGTATGTGCAATCAGCGATAATGAAA-TACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGT-ACCAAAGTACAAAC
* * * * *
15990936 AGAGGCACGTGTGAGCAATCAAGGGTACCAAAGTACAAAA
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * * * *
15990976 AGGGGAACATATGTGCAATCAAGGGTACCAAAGTACCAAT
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * * ** *
15991016 AGGGGTACGTATGTGTAGTCAGGGGTACTGAAGTGCAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * ** * *
15991056 AAGGGCACGTATGTGGAATCAGTTGTACCGAAGTACAAAG
1 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
* * *
15991096 AGGGGCATGTTTGTCCAATCA
1 AGGGGCACGTATGTGCAATCA
15991117 TACAATAATT
Statistics
Matches: 170, Mismatches: 49, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
39 4 0.02
40 162 0.95
41 4 0.02
ACGTcount: A:0.36, C:0.16, G:0.29, T:0.19
Consensus pattern (40 bp):
AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAAAC
Found at i:15991076 original size:120 final size:120
Alignment explanation
Indices: 15990878--15991100 Score: 261
Period size: 120 Copynumber: 1.9 Consensus size: 120
15990868 GTGCATTTAG
*
15990878 GGGTACCAAAGTATAAACAGGGGCACGTATGTGCAATCAGCGATAATGAAATACAAACAGAGGCA
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATCAGCGATAATGAAATACAAACAGAGGCA
*
15990943 CGTGTGAGCAATCAAG-GGTACCAAAGTACAAAAAGGGGAACATATGTGCAATCAA
66 CGTATGAGCAATC-AGTGGTACCAAAGTACAAAAAGGGGAACATATGTGCAATCAA
* * * * * * * * * *
15990998 GGGTACCAAAGTACCAATAGGGGTACGTATGTGTAGTCAGGGGTACTGAAGTGCAAACA-AGGGC
1 GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATCAGCGATAATGAAATACAAACAGA-GGC
* * * * *
15991062 ACGTATGTGGAATCAGTTGTACCGAAGTACAAAGAGGGG
65 ACGTATGAGCAATCAGTGGTACCAAAGTACAAAAAGGGG
15991101 CATGTTTGTC
Statistics
Matches: 84, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
119 3 0.04
120 81 0.96
ACGTcount: A:0.37, C:0.16, G:0.30, T:0.17
Consensus pattern (120 bp):
GGGTACCAAAGTACAAACAGGGGCACGTATGTGCAATCAGCGATAATGAAATACAAACAGAGGCA
CGTATGAGCAATCAGTGGTACCAAAGTACAAAAAGGGGAACATATGTGCAATCAA
Found at i:15998884 original size:34 final size:34
Alignment explanation
Indices: 15998815--15998888 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 34
15998805 AATGCTAGTA
* ** *
15998815 ATCAGTAGGGCCTTTGCCCAATTTCAATAATAGT
1 ATCAGTAGGGCCTTCGCCCAATAACAATAAAAGT
*
15998849 ATCAGTAGGGCCTTCGCCC-ATAACAGTAACAAGT
1 ATCAGTAGGGCCTTCGCCCAATAACAATAA-AAGT
15998883 ATCAGT
1 ATCAGT
15998889 CATGCAGTGA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 7 0.21
34 27 0.79
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (34 bp):
ATCAGTAGGGCCTTCGCCCAATAACAATAAAAGT
Found at i:15999381 original size:27 final size:26
Alignment explanation
Indices: 15999350--15999867 Score: 525
Period size: 27 Copynumber: 19.3 Consensus size: 26
15999340 GGGTATAATA
*
15999350 GTCATTTAACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * * *
15999377 TTCATTTTAACCTACAGGGGTATTTTG
1 GTCATTTTACCCTA-TGGGGTATTTCG
*
15999404 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* *
15999431 GTCATTTTACCTTATGGGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * * *
15999458 GTCATTTTATCTTTTGGGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
15999485 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
*
15999512 ATCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
*
15999539 TTCATTTTACCCTATGGAGGTATTT-G
1 GTCATTTTACCCTATGG-GGTATTTCG
* **
15999565 AGTCATTCTATTCTATGGGGGTATTTCG
1 -GTCATTTTACCCTAT-GGGGTATTTCG
*
15999593 GTTATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* *
15999620 ATCATTTTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATG-GGGTATTTCG
*
15999647 GTCATTTTACCCTATGAGGGTATTTCA
1 GTCATTTTACCCTATG-GGGTATTTCG
* * *
15999674 ATCATTCTACTCTATGGGGGTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * *
15999701 GTCATTTTACTCTATTGGGTTATTTCA
1 GTCATTTTACCCTA-TGGGGTATTTCG
* * *
15999728 ATCATTTTATCCTATAGGGTTATTTCG
1 GTCATTTTACCCTAT-GGGGTATTTCG
* * * *
15999755 ATCATTTTACCCTATAGGAGTACTTCA
1 GTCATTTTACCCTAT-GGGGTATTTCG
*
15999782 GTCATTTTACCTTATGGGAGTATTTCG
1 GTCATTTTACCCTATGGG-GTATTTCG
* *
15999809 GTCATTCTACCCTATGGGGTATTTTG
1 GTCATTTTACCCTATGGGGTATTTCG
*
15999835 GTCATTTTATCCTATGGGGTATTTCG
1 GTCATTTTACCCTATGGGGTATTTCG
15999861 GTCATTT
1 GTCATTT
15999868 ACCTATTTTG
Statistics
Matches: 418, Mismatches: 61, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
26 44 0.11
27 369 0.88
28 5 0.01
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCG
Found at i:15999533 original size:108 final size:108
Alignment explanation
Indices: 15999361--15999867 Score: 603
Period size: 108 Copynumber: 4.7 Consensus size: 108
15999351 TCATTTAACC
* * * * * * * *
15999361 CTATAGGGGTATTTCGTTCATTTTAACCTACAGGGGTATTTTGGTTATTTTACCCTATGGGGGTA
1 CTATGGGGGTATTTCGGTCATTTTACCCTA-TGGGGTATTTCGATCATTTTACCCTATGAGGGTA
* ** *
15999426 TTTCGGTCATTTTACCTTATGGGGGTATTTTGGTCATTTTATCT
65 TTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTCTATCT
* *
15999470 -TTTGGGGGTATTTTGGTCATTTTACCCTATGAGGGTATTTCGATCATTTTACCCTATGAGGGTA
1 CTATGGGGGTATTTCGGTCATTTTACCCTATG-GGGTATTTCGATCATTTTACCCTATGAGGGTA
* * *
15999534 TTTCGTTCATTTTACCCTATGGAGGTATTTGAGTCATTCTAT-T
65 TTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTCTATCT
*
15999577 CTATGGGGGTATTTCGGTTATTTTACCCTATGGGGGTATTTCGATCATTTTACCCTATGAGGGTA
1 CTATGGGGGTATTTCGGTCATTTTACCCTAT-GGGGTATTTCGATCATTTTACCCTATGAGGGTA
* * *
15999642 TTTCAGTCATTTTACCCTATGAGGGTATTTCAATCATTCTA-CT
65 TTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTCTATCT
* * * *
15999685 CTATGGGGGTATTTCGGTCATTTTACTCTATTGGGTTATTTCAATCATTTTATCCTAT-AGGGTT
1 CTATGGGGGTATTTCGGTCATTTTACCCTA-TGGGGTATTTCGATCATTTTACCCTATGAGGG-T
* * * * * *
15999749 ATTTCGATCATTTTACCCTATAGGAGTACTTCAGTCATTTTACCT
64 ATTTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTCTATCT
* * * * *
15999794 -TATGGGAGTATTTCGGTCATTCTACCCTATGGGGTATTTTGGTCATTTTATCCTATG-GGGTAT
1 CTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGATCATTTTACCCTATGAGGGTAT
15999857 TTCGGTCATTT
66 TTCGGTCATTT
15999868 ACCTATTTTG
Statistics
Matches: 344, Mismatches: 46, Indels: 19
0.84 0.11 0.05
Matches are distributed among these distances:
106 13 0.04
107 32 0.09
108 295 0.86
109 4 0.01
ACGTcount: A:0.19, C:0.16, G:0.21, T:0.44
Consensus pattern (108 bp):
CTATGGGGGTATTTCGGTCATTTTACCCTATGGGGTATTTCGATCATTTTACCCTATGAGGGTAT
TTCGGTCATTTTACCCTATGGGGGTATTTCAGTCATTCTATCT
Found at i:16003228 original size:39 final size:39
Alignment explanation
Indices: 16003185--16003276 Score: 139
Period size: 39 Copynumber: 2.4 Consensus size: 39
16003175 TAGAAAACTA
16003185 TTGTACTTCGGTACCCCTGATCACACTTACGTGCCCCAG
1 TTGTACTTCGGTACCCCTGATCACACTTACGTGCCCCAG
* * * *
16003224 TTGTACTTCGATACCCGTGATCGCACTTACGTGCCCCTG
1 TTGTACTTCGGTACCCCTGATCACACTTACGTGCCCCAG
*
16003263 TTGTACTTCAGTAC
1 TTGTACTTCGGTAC
16003277 TCCTAATAGC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 47 1.00
ACGTcount: A:0.17, C:0.33, G:0.18, T:0.32
Consensus pattern (39 bp):
TTGTACTTCGGTACCCCTGATCACACTTACGTGCCCCAG
Found at i:16003289 original size:39 final size:37
Alignment explanation
Indices: 16003185--16003297 Score: 120
Period size: 39 Copynumber: 2.9 Consensus size: 37
16003175 TAGAAAACTA
16003185 TTGTACTTCGGTACCCCTGATCA-CACTTACGTGCCCCAG
1 TTGTACTTC-GTA-CCCTGAT-AGCACTTACGTGCCCCAG
* *
16003224 TTGTACTTCGATACCCGTGATCGCACTTACGTGCCCCTG
1 TTGTACTTCG-TACCC-TGATAGCACTTACGTGCCCCAG
* *
16003263 TTGTACTTCAGTACTCCTAATAGCACTTTCGTGCC
1 TTGTACTTC-GTAC-CCTGATAGCACTTACGTGCC
16003298 GTGTTTATGT
Statistics
Matches: 64, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
38 4 0.06
39 57 0.89
40 3 0.05
ACGTcount: A:0.18, C:0.33, G:0.18, T:0.32
Consensus pattern (37 bp):
TTGTACTTCGTACCCTGATAGCACTTACGTGCCCCAG
Found at i:16007219 original size:29 final size:29
Alignment explanation
Indices: 16007186--16007476 Score: 228
Period size: 29 Copynumber: 10.0 Consensus size: 29
16007176 AGTCTAATCA
*
16007186 TGATGGCCGTCACCGTCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* *
16007215 TGATGGTCGTCACCATCCCTTTTCATAAC
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* * * * *
16007244 CGATAGCCG-AAGCTATGCCTTTTCATAAT
1 TGATGGCCGTCA-CCATCCCTTTTCATAAT
* * * *
16007273 TCAATGGTCATCACCATCCCTTTTCATAGT
1 T-GATGGCCGTCACCATCCCTTTTCATAAT
*
16007303 TGATGGCCCTCACCATCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* * * ** **
16007332 CGTTAGCC-AAAGTATCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* * * *
16007360 TCGATGGTCGTCTCCAACCCTTTTCATAGT
1 T-GATGGCCGTCACCATCCCTTTTCATAAT
* *
16007390 TGATGGTCATCACCATCCCTTTTCATAAT
1 TGATGGCCGTCACCATCCCTTTTCATAAT
* * * *
16007419 TGATAGCTG-AAGCTATCCCTTTTCATAAT
1 TGATGGCCGTCA-CCATCCCTTTTCATAAT
* *
16007448 TCAATGGTCGTCACCATCCCTTTTCATAA
1 T-GATGGCCGTCACCATCCCTTTTCATAA
16007477 CCGATAGCCG
Statistics
Matches: 197, Mismatches: 57, Indels: 15
0.73 0.21 0.06
Matches are distributed among these distances:
28 18 0.09
29 125 0.63
30 52 0.26
31 2 0.01
ACGTcount: A:0.23, C:0.29, G:0.13, T:0.35
Consensus pattern (29 bp):
TGATGGCCGTCACCATCCCTTTTCATAAT
Found at i:16007294 original size:59 final size:59
Alignment explanation
Indices: 16007201--16007512 Score: 301
Period size: 59 Copynumber: 5.3 Consensus size: 59
16007191 GCCGTCACCG
* *
16007201 TCCCTTTTCATAATT-GATGGTCGTCACCATCCCTTTTCATAACCGATAGCCGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
* * * * * ** *
16007259 TGCCTTTTCATAATTCAATGGTCATCACCATCCCTTTTCATAGTTGATGGCCCTCA-CCA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAG-CCGAAGCTA
* * * * ** * * *** *
16007318 TCCCTTTTCATAA-TCGTTAGCCA-AAGTATCCCTTTTCATAATTCGATGGTCGTCTCCA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAA-TCGATAGCCGAAGCTA
* * * *
16007376 ACCCTTTTCATAGTT-GATGGTCATCACCATCCCTTTTCATAATTGATAGCTGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
* * *
16007434 TCCCTTTTCATAATTCAATGGTCGTCACCATCCCTTTTCATAACCGATAGCCGAAGCTA
1 TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
*
16007493 TCCCTTTTCACAATTCGATG
1 TCCCTTTTCATAATTCGATG
16007513 ATCGTCAATA
Statistics
Matches: 198, Mismatches: 49, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
57 15 0.08
58 66 0.33
59 114 0.58
60 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.12, T:0.35
Consensus pattern (59 bp):
TCCCTTTTCATAATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCCGAAGCTA
Found at i:16008823 original size:29 final size:29
Alignment explanation
Indices: 16008786--16008847 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
16008776 AATTTACCAC
*
16008786 TTTTTTAGATTATA-CAATTTTGCCCCTAT
1 TTTTTTAGATTATATC-ATTCTGCCCCTAT
* *
16008815 TTTTTTAGATTTTATCGTTCTGCCCCTAT
1 TTTTTTAGATTATATCATTCTGCCCCTAT
16008844 TTTT
1 TTTT
16008848 CATATGTTAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 28 0.97
30 1 0.03
ACGTcount: A:0.18, C:0.18, G:0.08, T:0.56
Consensus pattern (29 bp):
TTTTTTAGATTATATCATTCTGCCCCTAT
Found at i:16016828 original size:417 final size:415
Alignment explanation
Indices: 16016049--16017289 Score: 2174
Period size: 409 Copynumber: 3.0 Consensus size: 415
16016039 TAACATCAAA
* *
16016049 TCGTCCCTTTTATTTTTATTCTAAATTTATCTTTAAATTTTAGGCCCAAAACTTTGGGAAAATTG
1 TCGTCCGTTTTATTTTT-TTCTAAATTTATCTTTAAATTTTATGCCCAAAACTTTGGGAAAATTG
*
16016114 CTCTTGACGCCCTAGGGTTCCCAAACCCTATATTTTTAATCCAACTATACCCAATTGAACAAGGA
65 CTCTTGACGCCCTAGGGTTCCCAAACCCTATATTTTTAATCCAACTTTACCCAATTGAACAAGGA
16016179 TTATGTTCTCTTCAAAACCAAATAGAATTTCTTTCACCTCCCTA-TTTTTTCTCTTCTTTCCTCT
130 TTATGTTCTCTTCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTTTTTCTCTTCTTTCCTCT
16016243 CTTTTACATCAAATTTTTCATGATTTTGTTGTTGAATTTTTATTGTTTTTTCTGGAATCAAAGTC
195 CTTTTACATCAAATTTTTCATGATTTTGTTGTTGAATTTTTATTGTTTTTTCTGGAATCAAAGTC
* *
16016308 AATCCTTGTTAACTCATTGTTCTACCAGAAATGAAATTGTCAATAGAAACATTCCAAATACTAAC
260 AATCCTTGTTAACTCGTTGTTCTACCAGAAACGAAATTGTCAATAGAAACATTCCAAATACTAAC
16016373 CAAGAATTGGTAAGTACGCCTCAATCTCGACGTTTAGATCTCGAATCACTATATGACTTCTATCT
325 CAAGAATTGGTAAGTACGCCTCAATCTCGACGTTTAGATCTCGAATCACTATATGACTTCTATCT
*
16016438 AACAATAATATTGTGATAGATTAAAT
390 AACAATAATATTGTGATCGATTAAAT
*
16016464 TTGTCCGTTTTATTTTTCTTCTAAATTTATCTTTAAATTTTATGCCCAAAACTTTGGGAAAATTG
1 TCGTCCGTTTTATTTTT-TTCTAAATTTATCTTTAAATTTTATGCCCAAAACTTTGGGAAAATTG
*
16016529 CTCCTGACGCCCTAGGGTTCCCAAACCCTATATTTTTAATCCAACTTTACCCAATTGAACAAGGA
65 CTCTTGACGCCCTAGGGTTCCCAAACCCTATATTTTTAATCCAACTTTACCCAATTGAACAAGGA
* *
16016594 TTATGTTCTCTGCAAAACCAAATAGAATTTCTTTCACCTCCTTATTTTTTTTCTCTTCTTTCCTC
130 TTATGTTCTCTTCAAAACCAAATAGAATTTCTTTCACCTCCCTA-TTTTTTTCTCTTCTTTCCTC
* *
16016659 TCTTTTACACCAAATTTTTCATGATTTTGTTGTTGAATTTTTATTGTTTTTTCTTGAATCAAAGT
194 TCTTTTACATCAAATTTTTCATGATTTTGTTGTTGAATTTTTATTGTTTTTTCTGGAATCAAAGT
*
16016724 CAATCCTTGTTAACTCGTTGTTCTACCAGAAACGAAATTGTCAATAGAAACATTCCAAGTACTAA
259 CAATCCTTGTTAACTCGTTGTTCTACCAGAAACGAAATTGTCAATAGAAACATTCCAAATACTAA
* * *
16016789 CTAAGAATTGGTAAGTACGTCTCAATCTCGACGTTTAGATCTCGAATCACTATATGATTTCTATC
324 CCAAGAATTGGTAAGTACGCCTCAATCTCGACGTTTAGATCTCGAATCACTATATGACTTCTATC
16016854 TAACAATAATATTGTGATCGATTAAAT
389 TAACAATAATATTGTGATCGATTAAAT
*
16016881 TCGTCCG-TTTA-----TTCTAAATTTATCTTTAATTTTTATGCCCAAAACTTTGGGAAAATTGC
1 TCGTCCGTTTTATTTTTTTCTAAATTTATCTTTAAATTTTATGCCCAAAACTTTGGGAAAATTGC
*
16016940 TCTTGACG-CCTATGGTTCCCAAACCCTATATTTTTAATCCAACTTTACCCAATTTGAACAAGGA
66 TCTTGACGCCCTAGGGTTCCCAAACCCTATATTTTTAATCCAACTTTACCCAA-TTGAACAAGGA
*
16017004 TTATGTTCTCTTCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTGTTTCTCTTCTTTCCTCT
130 TTATGTTCTCTTCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTTTTTCTCTTCTTTCCTCT
*
16017069 CTTTTACATCAAAATTTTCATGATTTTGTTGTTGAATTTTTATTGTTTTTTCTGGAATCAAAGTC
195 CTTTTACATCAAATTTTTCATGATTTTGTTGTTGAATTTTTATTGTTTTTTCTGGAATCAAAGTC
* * *
16017134 AATCCTTGTTATCTTGTTGTTCTACCAGAAACAAAATTGTCAATAGAAACATTCCAAATACTAAC
260 AATCCTTGTTAACTCGTTGTTCTACCAGAAACGAAATTGTCAATAGAAACATTCCAAATACTAAC
*
16017199 CAAGAATTGGTAAGCACGCCTCAATCTCGACGTTTAGATCTCGAATCACTATATGACTTCTATCT
325 CAAGAATTGGTAAGTACGCCTCAATCTCGACGTTTAGATCTCGAATCACTATATGACTTCTATCT
16017264 AACAATAATATTGTGATCGATTAAAT
390 AACAATAATATTGTGATCGATTAAAT
16017290 GATCTTTCTT
Statistics
Matches: 788, Mismatches: 35, Indels: 12
0.94 0.04 0.01
Matches are distributed among these distances:
409 273 0.35
410 107 0.14
415 166 0.21
416 4 0.01
417 238 0.30
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (415 bp):
TCGTCCGTTTTATTTTTTTCTAAATTTATCTTTAAATTTTATGCCCAAAACTTTGGGAAAATTGC
TCTTGACGCCCTAGGGTTCCCAAACCCTATATTTTTAATCCAACTTTACCCAATTGAACAAGGAT
TATGTTCTCTTCAAAACCAAATAGAATTTCTTTCACCTCCCTATTTTTTTCTCTTCTTTCCTCTC
TTTTACATCAAATTTTTCATGATTTTGTTGTTGAATTTTTATTGTTTTTTCTGGAATCAAAGTCA
ATCCTTGTTAACTCGTTGTTCTACCAGAAACGAAATTGTCAATAGAAACATTCCAAATACTAACC
AAGAATTGGTAAGTACGCCTCAATCTCGACGTTTAGATCTCGAATCACTATATGACTTCTATCTA
ACAATAATATTGTGATCGATTAAAT
Found at i:16020631 original size:16 final size:18
Alignment explanation
Indices: 16020610--16020647 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
16020600 TTCTATAGGG
16020610 ATTTTACT-TT-TATTTT
1 ATTTTACTATTGTATTTT
16020626 ATTTTACTATTGTATTTT
1 ATTTTACTATTGTATTTT
16020644 ATTT
1 ATTT
16020648 AAATAAGGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.21, C:0.05, G:0.03, T:0.71
Consensus pattern (18 bp):
ATTTTACTATTGTATTTT
Found at i:16026334 original size:27 final size:27
Alignment explanation
Indices: 16026297--16026614 Score: 340
Period size: 27 Copynumber: 11.8 Consensus size: 27
16026287 ATTCATGGGT
* *
16026297 AAATTACCGAAATACCC-CTGAAAGGTA
1 AAATTATCGAAATACCCTC-GATAGGTA
* *
16026324 AAATTATCGAAATACCC-CCAAAGGGTA
1 AAATTATCGAAATACCCTCGATA-GGTA
* * *
16026351 AAATTACCAAAATACCCTCGATGGGTA
1 AAATTATCGAAATACCCTCGATAGGTA
* * * *
16026378 AAATTACCAAAATACCGTCGATGGGTA
1 AAATTATCGAAATACCCTCGATAGGTA
*
16026405 AAATTA-CTGAAATATCCTCGATAGGTA
1 AAATTATC-GAAATACCCTCGATAGGTA
* *
16026432 AAATTATCGAAATACCCTTGATGGGTA
1 AAATTATCGAAATACCCTCGATAGGTA
*
16026459 AAATTATCAAAATACCCTCGATAGGTA
1 AAATTATCGAAATACCCTCGATAGGTA
* * *
16026486 AAATTACCAAAATACCGTCGATAGGTA
1 AAATTATCGAAATACCCTCGATAGGTA
* *
16026513 AAATTA-CTGAAATATCCTCGATGGGTA
1 AAATTATC-GAAATACCCTCGATAGGTA
* *
16026540 AAATTATCGAAATACCCTTGATGGGTA
1 AAATTATCGAAATACCCTCGATAGGTA
*
16026567 AAATTATCGAAATACCCTCGATGGGTA
1 AAATTATCGAAATACCCTCGATAGGTA
*
16026594 AAATTA-CTAAAATACCCTCGA
1 AAATTATC-GAAATACCCTCGA
16026615 AGAATAAAAT
Statistics
Matches: 256, Mismatches: 28, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.02
27 246 0.96
28 4 0.02
ACGTcount: A:0.41, C:0.19, G:0.15, T:0.25
Consensus pattern (27 bp):
AAATTATCGAAATACCCTCGATAGGTA
Found at i:16026378 original size:54 final size:54
Alignment explanation
Indices: 16026291--16026614 Score: 384
Period size: 54 Copynumber: 6.0 Consensus size: 54
16026281 TGTGCAATTC
* * *
16026291 ATGGGT-AAATTACCGAAATACCC-CTGAAAGGTAAAATTATCGAAATACCCCCA
1 ATGGGTAAAATTACCGAAATACCCTC-GATAGGTAAAATTATCGAAATACCCTCG
* * * * * *
16026344 AAGGGTAAAATTACCAAAATACCCTCGATGGGTAAAATTACCAAAATACCGTCG
1 ATGGGTAAAATTACCGAAATACCCTCGATAGGTAAAATTATCGAAATACCCTCG
* * *
16026398 ATGGGTAAAATTACTGAAATATCCTCGATAGGTAAAATTATCGAAATACCCTTG
1 ATGGGTAAAATTACCGAAATACCCTCGATAGGTAAAATTATCGAAATACCCTCG
* * * * *
16026452 ATGGGTAAAATTATCAAAATACCCTCGATAGGTAAAATTACCAAAATACCGTCG
1 ATGGGTAAAATTACCGAAATACCCTCGATAGGTAAAATTATCGAAATACCCTCG
* * * * *
16026506 ATAGGTAAAATTACTGAAATATCCTCGATGGGTAAAATTATCGAAATACCCTTG
1 ATGGGTAAAATTACCGAAATACCCTCGATAGGTAAAATTATCGAAATACCCTCG
* * *
16026560 ATGGGTAAAATTATCGAAATACCCTCGATGGGTAAAATTA-CTAAAATACCCTCG
1 ATGGGTAAAATTACCGAAATACCCTCGATAGGTAAAATTATC-GAAATACCCTCG
16026614 A
1 A
16026615 AGAATAAAAT
Statistics
Matches: 226, Mismatches: 42, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
53 6 0.03
54 219 0.97
55 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (54 bp):
ATGGGTAAAATTACCGAAATACCCTCGATAGGTAAAATTATCGAAATACCCTCG
Found at i:16026486 original size:108 final size:108
Alignment explanation
Indices: 16026291--16026614 Score: 499
Period size: 108 Copynumber: 3.0 Consensus size: 108
16026281 TGTGCAATTC
* * * *** *
16026291 ATGGGT-AAATTACCGAAATA-CCCCTGAAAGGTAAAATTATCGAAATACCCCCAAAGGGTAAAA
1 ATGGGTAAAATTACTGAAATATCCTC-GATAGGTAAAATTATCGAAATACCCTTGATGGGTAAAA
*
16026354 TTACCAAAATACCCTCGATGGGTAAAATTACCAAAATACCGTCG
65 TTATCAAAATACCCTCGATGGGTAAAATTACCAAAATACCGTCG
16026398 ATGGGTAAAATTACTGAAATATCCTCGATAGGTAAAATTATCGAAATACCCTTGATGGGTAAAAT
1 ATGGGTAAAATTACTGAAATATCCTCGATAGGTAAAATTATCGAAATACCCTTGATGGGTAAAAT
*
16026463 TATCAAAATACCCTCGATAGGTAAAATTACCAAAATACCGTCG
66 TATCAAAATACCCTCGATGGGTAAAATTACCAAAATACCGTCG
* *
16026506 ATAGGTAAAATTACTGAAATATCCTCGATGGGTAAAATTATCGAAATACCCTTGATGGGTAAAAT
1 ATGGGTAAAATTACTGAAATATCCTCGATAGGTAAAATTATCGAAATACCCTTGATGGGTAAAAT
* * *
16026571 TATCGAAATACCCTCGATGGGTAAAATTACTAAAATACCCTCG
66 TATCAAAATACCCTCGATGGGTAAAATTACCAAAATACCGTCG
16026614 A
1 A
16026615 AGAATAAAAT
Statistics
Matches: 200, Mismatches: 15, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
107 6 0.03
108 191 0.95
109 3 0.01
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (108 bp):
ATGGGTAAAATTACTGAAATATCCTCGATAGGTAAAATTATCGAAATACCCTTGATGGGTAAAAT
TATCAAAATACCCTCGATGGGTAAAATTACCAAAATACCGTCG
Found at i:16026657 original size:26 final size:25
Alignment explanation
Indices: 16026619--16026705 Score: 79
Period size: 26 Copynumber: 3.3 Consensus size: 25
16026609 CCTCGAAGAA
*
16026619 TAAAATAATCGTATTGCCCTATAGGG
1 TAAAATGA-CGTATTGCCCTATAGGG
* *
16026645 TAAAATGACCGTAATGCCCTTGTAGGG
1 TAAAATGA-CGTATTGCCC-TATAGGG
16026672 TAAAATGAC-TATGATGCCCCTATA-GG
1 TAAAATGACGTAT--TG-CCCTATAGGG
16026698 TAAAATGA
1 TAAAATGA
16026706 TTGTAATACC
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
25 2 0.04
26 27 0.53
27 19 0.37
28 3 0.06
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.28
Consensus pattern (25 bp):
TAAAATGACGTATTGCCCTATAGGG
Found at i:16026688 original size:27 final size:27
Alignment explanation
Indices: 16026635--16026705 Score: 90
Period size: 27 Copynumber: 2.7 Consensus size: 27
16026625 AATCGTATTG
*
16026635 CCCTATAGGGTAAAATGACCGTAATGC
1 CCCTATAGGGTAAAATGACCATAATGC
* * * *
16026662 CCTTGTAGGGTAAAATGACTATGATGC
1 CCCTATAGGGTAAAATGACCATAATGC
16026689 CCCTATA-GGTAAAATGA
1 CCCTATAGGGTAAAATGA
16026706 TTGTAATACC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
26 10 0.27
27 27 0.73
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
CCCTATAGGGTAAAATGACCATAATGC
Found at i:16026809 original size:24 final size:24
Alignment explanation
Indices: 16026778--16026848 Score: 97
Period size: 24 Copynumber: 3.0 Consensus size: 24
16026768 CCCATCAAGT
16026778 TAAATGATTGATTTGTCTGTGATG
1 TAAATGATTGATTTGTCTGTGATG
* * * *
16026802 TAAGTGATTAATTTGTCCGAGATG
1 TAAATGATTGATTTGTCTGTGATG
*
16026826 TAAATGACTGATTTGTCTGTGAT
1 TAAATGATTGATTTGTCTGTGAT
16026849 TGGTATGACT
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.27, C:0.07, G:0.24, T:0.42
Consensus pattern (24 bp):
TAAATGATTGATTTGTCTGTGATG
Found at i:16026878 original size:24 final size:24
Alignment explanation
Indices: 16026829--16026886 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
16026819 CGAGATGTAA
* *
16026829 ATGACTGATTTGTCTGTGATTGGT
1 ATGACTGATTTATCTGTGACTGGT
*
16026853 ATGACTGATTTATTTGTGAACT-GT
1 ATGACTGATTTATCTGTG-ACTGGT
*
16026877 ATAACTGATT
1 ATGACTGATT
16026887 CTGAGCATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
24 27 0.93
25 2 0.07
ACGTcount: A:0.24, C:0.09, G:0.22, T:0.45
Consensus pattern (24 bp):
ATGACTGATTTATCTGTGACTGGT
Found at i:16026990 original size:27 final size:27
Alignment explanation
Indices: 16026955--16027020 Score: 82
Period size: 27 Copynumber: 2.4 Consensus size: 27
16026945 GGAAGTATTG
16026955 TACTGGTGGCTCT-GCCACA-ATCACTAT
1 TACTGGTGGCT-TGGCCACATAT-ACTAT
16026982 TACTGGTGGCTTGGCCACATATACTAT
1 TACTGGTGGCTTGGCCACATATACTAT
* *
16027009 TACGGGTTGCTT
1 TACTGGTGGCTT
16027021 TATTGCAATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 1 0.03
27 32 0.91
28 2 0.06
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.33
Consensus pattern (27 bp):
TACTGGTGGCTTGGCCACATATACTAT
Found at i:16027103 original size:32 final size:32
Alignment explanation
Indices: 16027058--16027228 Score: 204
Period size: 32 Copynumber: 5.4 Consensus size: 32
16027048 GTTGCGATAC
16027058 TACTGATGGCTTTGTGCCAATCATATTACCGT
1 TACTGATGGCTTTGTGCCAATCATATTACCGT
* * * *
16027090 TACGGATGGCTTTGTGTCGATCATATTACCAT
1 TACTGATGGCTTTGTGCCAATCATATTACCGT
16027122 TACTGATGGCTTTGTGCCAATCATATTACCGT
1 TACTGATGGCTTTGTGCCAATCATATTACCGT
* * * *
16027154 TACTGATGG-TTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTT-TGTGCCAATCATATTACCGT
* *
16027186 TACTGA-GGACTTTTTGCCAATCATATTACTG-
1 TACTGATGG-CTTTGTGCCAATCATATTACCGT
*
16027217 TACTTATGGCTT
1 TACTGATGGCTT
16027229 GTAGCATTCT
Statistics
Matches: 119, Mismatches: 16, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
31 12 0.10
32 105 0.88
33 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.20, T:0.38
Consensus pattern (32 bp):
TACTGATGGCTTTGTGCCAATCATATTACCGT
Found at i:16027162 original size:64 final size:65
Alignment explanation
Indices: 16027056--16027230 Score: 232
Period size: 64 Copynumber: 2.7 Consensus size: 65
16027046 CTGTTGCGAT
* * *
16027056 ACTACTGATGGCTTTGTGCCAATCATATTACCGTTACGGATGGCTT-TGTGTCGATCATATTACC
1 ACTACTGATGGCTTTGTGCCAATCATATTACCGTTACTGATGGCTTGTGTGCCGATCATATCACC
* *
16027120 ATTACTGATGGCTTTGTGCCAATCATATTACCGTTACTGATGG-TTGTGTGCCGATCATATCACT
1 ACTACTGATGGCTTTGTGCCAATCATATTACCGTTACTGATGGCTTGTGTGCCGATCATATCACC
* * * *
16027184 GCTACTGA-GGACTTTTTGCCAATCATATTACTG-TACTTATGGCTTGT
1 ACTACTGATGG-CTTTGTGCCAATCATATTACCGTTACTGATGGCTTGT
16027231 AGCATTCTGT
Statistics
Matches: 98, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
63 12 0.12
64 86 0.88
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.38
Consensus pattern (65 bp):
ACTACTGATGGCTTTGTGCCAATCATATTACCGTTACTGATGGCTTGTGTGCCGATCATATCACC
Found at i:16027244 original size:21 final size:20
Alignment explanation
Indices: 16027220--16027283 Score: 56
Period size: 22 Copynumber: 3.0 Consensus size: 20
16027210 ATTACTGTAC
16027220 TTATGGCTTGTAGCATTCTGT
1 TTATGGCTT-TAGCATTCTGT
* *
16027241 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTT-TAGC-ATTCTGT
*
16027263 TTACGGCTCTTAGCCATTCTG
1 TTATGGCT-TTAG-CATTCTG
16027284 ATCACTGGCA
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
21 12 0.35
22 20 0.59
23 2 0.06
ACGTcount: A:0.17, C:0.20, G:0.19, T:0.44
Consensus pattern (20 bp):
TTATGGCTTTAGCATTCTGT
Found at i:16027265 original size:22 final size:21
Alignment explanation
Indices: 16027220--16027265 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
16027210 ATTACTGTAC
* * *
16027220 TTATGGCTTGTAGCATTCTGT
1 TTATAGCTTATAGCATCCTGT
16027241 TTATAGCTTATAGCTATCCTGT
1 TTATAGCTTATAGC-ATCCTGT
16027263 TTA
1 TTA
16027266 CGGCTCTTAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 12 0.57
22 9 0.43
ACGTcount: A:0.20, C:0.15, G:0.17, T:0.48
Consensus pattern (21 bp):
TTATAGCTTATAGCATCCTGT
Found at i:16032344 original size:20 final size:20
Alignment explanation
Indices: 16032319--16032356 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
16032309 GTTTTTCTAG
16032319 TTTAAATTATTT-TGTTAAAT
1 TTTAAATT-TTTATGTTAAAT
16032339 TTTAAATTTTTATGTTAA
1 TTTAAATTTTTATGTTAA
16032357 TAAAAGGGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (20 bp):
TTTAAATTTTTATGTTAAAT
Found at i:16052365 original size:33 final size:33
Alignment explanation
Indices: 16052323--16052389 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
16052313 TACTCAAATG
16052323 TCATAATCTTTAATTTCCTCTTTACTTACTCTC
1 TCATAATCTTTAATTTCCTCTTTACTTACTCTC
*
16052356 TCATGATCTTTAATTTCCTCTTTACTTACTCTC
1 TCATAATCTTTAATTTCCTCTTTACTTACTCTC
16052389 T
1 T
16052390 TACTCGTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.19, C:0.27, G:0.01, T:0.52
Consensus pattern (33 bp):
TCATAATCTTTAATTTCCTCTTTACTTACTCTC
Found at i:16052747 original size:50 final size:50
Alignment explanation
Indices: 16052682--16052863 Score: 213
Period size: 50 Copynumber: 3.6 Consensus size: 50
16052672 CAATGTCATA
* ** * * * *
16052682 TCCCAGATATGGTCTTACATGGGAGTTCTCATGTTGGTGCTTATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCTAACGCCATG
* ***
16052732 TTCCAGACATGGTCTTATGGGGGACCTCTCATCTCGGTG-TCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCT-AACGCCATG
* *
16052782 TCCCAGACATGGTCTTACACGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCTAACGCCATG
* *
16052832 TCCCAAACATGGTCTTACGTGGGACCTCTCAT
1 TCCCAGACATGGTCTTACATGGGACCTCTCAT
16052864 AATCTTAATG
Statistics
Matches: 111, Mismatches: 19, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.01
50 110 0.99
ACGTcount: A:0.19, C:0.29, G:0.24, T:0.29
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCTAACGCCATG
Found at i:16052812 original size:100 final size:100
Alignment explanation
Indices: 16052682--16052863 Score: 247
Period size: 100 Copynumber: 1.8 Consensus size: 100
16052672 CAATGTCATA
* * ** * * ** * * *
16052682 TCCCAGATATGGTCTTACATGGGAGTTCTCATGTTGGTGCTTATGCCATGTTCCAGACATGGTCT
1 TCCCAGACATGGTCTTACACGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCT
*
16052747 TATGGGGGACCTCTCATCTCGGTGTCAACGCCATG
66 TACGGGGGACCTCTCATCTCGGTGTCAACGCCATG
16052782 TCCCAGACATGGTCTTACACGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCT
1 TCCCAGACATGGTCTTACACGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCT
*
16052847 TACGTGGGACCTCTCAT
66 TACGGGGGACCTCTCAT
16052864 AATCTTAATG
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
100 69 1.00
ACGTcount: A:0.19, C:0.29, G:0.24, T:0.29
Consensus pattern (100 bp):
TCCCAGACATGGTCTTACACGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCT
TACGGGGGACCTCTCATCTCGGTGTCAACGCCATG
Found at i:16060901 original size:41 final size:40
Alignment explanation
Indices: 16060849--16060928 Score: 106
Period size: 41 Copynumber: 2.0 Consensus size: 40
16060839 CATATTAACG
* * *
16060849 CATATTGATGCCACTGTCCCAGACAGGGTCTTATACGAAT
1 CATATTGATGCCAATATCCCAGACAGGGTCTTAGACGAAT
* *
16060889 CATATATGATGCCAATATCCCAGATATGGTCTTAGACGAA
1 CATAT-TGATGCCAATATCCCAGACAGGGTCTTAGACGAA
16060929 GTTACACCTC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
40 5 0.15
41 29 0.85
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.28
Consensus pattern (40 bp):
CATATTGATGCCAATATCCCAGACAGGGTCTTAGACGAAT
Found at i:16061276 original size:42 final size:42
Alignment explanation
Indices: 16061212--16061296 Score: 152
Period size: 42 Copynumber: 2.0 Consensus size: 42
16061202 CCCCGATCTA
16061212 ATTTCAGATTCATTTTTTCTTGATCTATATGTATTCAAAATT
1 ATTTCAGATTCATTTTTTCTTGATCTATATGTATTCAAAATT
* *
16061254 ATTTTAGATTCCTTTTTTCTTGATCTATATGTATTCAAAATT
1 ATTTCAGATTCATTTTTTCTTGATCTATATGTATTCAAAATT
16061296 A
1 A
16061297 ACTCATTTAA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.28, C:0.12, G:0.07, T:0.53
Consensus pattern (42 bp):
ATTTCAGATTCATTTTTTCTTGATCTATATGTATTCAAAATT
Found at i:16071861 original size:27 final size:28
Alignment explanation
Indices: 16071801--16071876 Score: 84
Period size: 27 Copynumber: 2.7 Consensus size: 28
16071791 GGTTAAAATA
* * *
16071801 ATAAAATTTGTAAAGTAAGGGACAAAATT
1 ATAAAATTTGAAAAAT-AGGGACAAAAGT
*
16071830 GTAAAATTTGAAAAATAGGG-CAAAAGT
1 ATAAAATTTGAAAAATAGGGACAAAAGT
16071857 ATAAAATCTT-AAAAATAGGG
1 ATAAAAT-TTGAAAAATAGGG
16071877 GAAACTTGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 22 0.54
28 6 0.15
29 13 0.32
ACGTcount: A:0.53, C:0.04, G:0.18, T:0.25
Consensus pattern (28 bp):
ATAAAATTTGAAAAATAGGGACAAAAGT
Found at i:16071888 original size:27 final size:27
Alignment explanation
Indices: 16071818--16071898 Score: 94
Period size: 27 Copynumber: 3.0 Consensus size: 27
16071808 TTGTAAAGTA
16071818 AGGGACAAAATTGTAAAAT-TTGAAAAAT
1 AGGG-CAAAATTGTAAAATCTT-AAAAAT
* *
16071846 AGGGCAAAAGTATAAAATCTTAAAAAT
1 AGGGCAAAATTGTAAAATCTTAAAAAT
* *
16071873 AGGGGAAACTTGTAAAATC-TAAAAAT
1 AGGGCAAAATTGTAAAATCTTAAAAAT
16071899 TTGGGTCAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 7 0.15
27 33 0.72
28 6 0.13
ACGTcount: A:0.53, C:0.06, G:0.17, T:0.23
Consensus pattern (27 bp):
AGGGCAAAATTGTAAAATCTTAAAAAT
Found at i:16083460 original size:17 final size:17
Alignment explanation
Indices: 16083434--16083468 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
16083424 ACTAACATGA
*
16083434 AAATGTAATGACAATAT
1 AAATGCAATGACAATAT
16083451 AAATGCAATGACAATAT
1 AAATGCAATGACAATAT
16083468 A
1 A
16083469 TGTTTCTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.26
Consensus pattern (17 bp):
AAATGCAATGACAATAT
Found at i:16086244 original size:20 final size:20
Alignment explanation
Indices: 16086203--16086245 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
16086193 ACCCTTGCAG
* *
16086203 TTTGAAAAATTTTAACTTTT
1 TTTGAAAAATTTCAACTATT
16086223 TTTGAAAAATTTCATA-TATT
1 TTTGAAAAATTTCA-ACTATT
16086243 TTT
1 TTT
16086246 TATTTAGTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTGAAAAATTTCAACTATT
Found at i:16088268 original size:208 final size:207
Alignment explanation
Indices: 16087899--16088554 Score: 916
Period size: 208 Copynumber: 3.2 Consensus size: 207
16087889 AACGGCGTCT
* * *
16087899 TTTTCTTGTTGAGTTTTAGACACAATAGTGGCGCCTCAAAGAAATCGCCGCTGAAGTCAATCATT
1 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAATCGCCGCTGAAGTCAATCATT
** *
16087964 AGCGGCGCTTTAGAGGAAGCGCTACAAAAAGTTTTAAGCATACGCCGTCATTTTCTGTTGTGCTT
66 AGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCATCATTTTCTGTTGTGCTT
* * * *
16088029 AGGGACATTAGTGGCACGTCGCGAGAAACGCCGCAAAAGTCAAGGATTATCGGTAATAGTTTTAG
131 AGGGACATTAGTGGCGCTTCGCGA-AAACGCCGCAAAATTCAAGCATTATCGGTAATAGTTTTAG
*
16088094 GCAAATGACAACG
195 GCAAATGACAACA
* *
16088107 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAATTGCCGCTGAAGTCAATCACT
1 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAATCGCCGCTGAAGTCAATCATT
** * * *
16088172 ATTGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACACCATCGTTCTCTGTTGTGCTT
66 AGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCATCATTTTCTGTTGTGCTT
* * *
16088237 AGGGACATTAGTGGTGCTTCGCGGAAAACGCCGTAAAATTCAAGCATTATTGGTAATAGTTTTAG
131 AGGGACATTAGTGGCGCTTCGC-GAAAACGCCGCAAAATTCAAGCATTATCGGTAATAGTTTTAG
* **
16088302 ACAAACAACAACA
195 GCAAATGACAACA
* * ** *
16088315 TTTTCTTGTTGAGTTTTAGACACAATAGTGGCACTTCGAAGAAATCGTTGCCGAAGTCAATCATT
1 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAATCGCCGCTGAAGTCAATCATT
** *
16088380 AGCCCCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCATCATTTTCTATTGTGCTT
66 AGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCATCATTTTCTGTTGTGCTT
* * * *
16088445 AGGGAAATTAGTGGCGCTTCGCAAAAAATGCCGCAAAATTCAAGCATTATCGATAATAGTTTTAG
131 AGGGACATTAGTGGCGCTTCGC-GAAAACGCCGCAAAATTCAAGCATTATCGGTAATAGTTTTAG
*
16088510 GCAAATGACAGCA
195 GCAAATGACAACA
* * * *
16088523 TTTTCTTTTTCAGATTTAGAGACATTAGTGGC
1 TTTTCTTGTTCAGTTTTAGACACAATAGTGGC
16088555 GCATTGCCAA
Statistics
Matches: 391, Mismatches: 56, Indels: 2
0.87 0.12 0.00
Matches are distributed among these distances:
208 389 0.99
209 2 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (207 bp):
TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAATCGCCGCTGAAGTCAATCATT
AGCGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCATCATTTTCTGTTGTGCTT
AGGGACATTAGTGGCGCTTCGCGAAAACGCCGCAAAATTCAAGCATTATCGGTAATAGTTTTAGG
CAAATGACAACA
Found at i:16088626 original size:208 final size:207
Alignment explanation
Indices: 16087899--16088627 Score: 895
Period size: 208 Copynumber: 3.5 Consensus size: 207
16087889 AACGGCGTCT
* * * *
16087899 TTTTCTTGTTGAGTTTTAGACACAATAGTGGCGCCTCAAAGAAATCGCCGCTGAAGTCAATCATT
1 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAAT-GCCGCAGAAGTCAATCATT
* *
16087964 AGCGGCGCTTTAGAGGAAGCGCTACAAAAAGTTTTAAGCATACGCCGTCATTTTCTGTTGTGCTT
65 AGCGGCGCTTTAGAGGAAGCGCCACAAAAAGTTTTAAGCATACGCCATCATTTTCTGTTGTGCTT
* * * * *
16088029 AGGGACATTAGTGGCACGTCGCGAGAAACGCCGCAAAAGTCAAGGATTATCGGTAATAGTTTTAG
130 AGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAATTCAAGCATTATCGGTAATAGTTTTAG
*
16088094 GCAAATGACAACG
195 GCAAATGACAACA
* *
16088107 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAATTGCCGCTGAAGTCAATCACT
1 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAA-TGCCGCAGAAGTCAATCATT
** * * * *
16088172 ATTGGCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACACCATCGTTCTCTGTTGTGCTT
65 AGCGGCGCTTTAGAGGAAGCGCCACAAAAAGTTTTAAGCATACGCCATCATTTTCTGTTGTGCTT
* * * *
16088237 AGGGACATTAGTGGTGCTTCGCGGAAAACGCCGTAAAATTCAAGCATTATTGGTAATAGTTTTAG
130 AGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAATTCAAGCATTATCGGTAATAGTTTTAG
* **
16088302 ACAAACAACAACA
195 GCAAATGACAACA
* * ** *
16088315 TTTTCTTGTTGAGTTTTAGACACAATAGTGGCACTTCGAAGAAATCGTTGCCGAAGTCAATCATT
1 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAAT-GCCGCAGAAGTCAATCATT
** * *
16088380 AGCCCCGCTTTAGAGGAAGCGCCGCAAAAAGTTTTAAGCATACGCCATCATTTTCTATTGTGCTT
65 AGCGGCGCTTTAGAGGAAGCGCCACAAAAAGTTTTAAGCATACGCCATCATTTTCTGTTGTGCTT
* * * *
16088445 AGGGAAATTAGTGGCGCTTCGCAAAAAATGCCGCAAAATTCAAGCATTATCGATAATAGTTTTAG
130 AGGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAATTCAAGCATTATCGGTAATAGTTTTAG
*
16088510 GCAAATGACAGCA
195 GCAAATGACAACA
* * * * * * * * *
16088523 TTTTCTTTTTCAGATTTAGAGACATTAGTGGCGCATTGCCAA-AAATGCCGCAAAATTCAATAAT
1 TTTTCTTGTTCAGTTTTAGACACAATAGTGGCAC-TT-CAAAGAAATGCCGCAGAAGTCAATCAT
* * * **
16088587 TAGCGGCGTTTTTATA-GTAGCGCCACAAAAAAATTTAAGCA
64 TAGCGGCG-CTTTAGAGGAAGCGCCACAAAAAGTTTTAAGCA
16088628 AATGGCAACG
Statistics
Matches: 444, Mismatches: 72, Indels: 10
0.84 0.14 0.02
Matches are distributed among these distances:
207 1 0.00
208 428 0.96
209 12 0.03
210 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (207 bp):
TTTTCTTGTTCAGTTTTAGACACAATAGTGGCACTTCAAAGAAATGCCGCAGAAGTCAATCATTA
GCGGCGCTTTAGAGGAAGCGCCACAAAAAGTTTTAAGCATACGCCATCATTTTCTGTTGTGCTTA
GGGACATTAGTGGCGCTTCGCGAAAAACGCCGCAAAATTCAAGCATTATCGGTAATAGTTTTAGG
CAAATGACAACA
Found at i:16088992 original size:14 final size:14
Alignment explanation
Indices: 16088973--16089005 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
16088963 TTATATATGT
16088973 TTTATGA-TTTAGGG
1 TTTATGATTTTA-GG
16088987 TTTATGATTTTAGG
1 TTTATGATTTTAGG
16089001 TTTAT
1 TTTAT
16089006 ATATGTTCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.58
Consensus pattern (14 bp):
TTTATGATTTTAGG
Found at i:16089370 original size:22 final size:22
Alignment explanation
Indices: 16089345--16089390 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
16089335 TGGGGTTCGT
*
16089345 GGGTTTAAGGTTTAAGGGT-TAA
1 GGGTTTAAGATTT-AGGGTCTAA
16089367 GGGTTTAAGATTTAGGGTCTAA
1 GGGTTTAAGATTTAGGGTCTAA
16089389 GG
1 GG
16089391 AATAAAGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.26, C:0.02, G:0.37, T:0.35
Consensus pattern (22 bp):
GGGTTTAAGATTTAGGGTCTAA
Found at i:16092078 original size:18 final size:18
Alignment explanation
Indices: 16092050--16092090 Score: 59
Period size: 18 Copynumber: 2.3 Consensus size: 18
16092040 TTAAAGTTCA
16092050 AATTT-CATAACTTA-AGT
1 AATTTACATAACTTACA-T
16092067 AATTTACATAACTTACAT
1 AATTTACATAACTTACAT
16092085 AATTTA
1 AATTTA
16092091 AATTTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.23
18 16 0.73
19 1 0.05
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.41
Consensus pattern (18 bp):
AATTTACATAACTTACAT
Found at i:16092144 original size:19 final size:19
Alignment explanation
Indices: 16092120--16092176 Score: 68
Period size: 19 Copynumber: 3.2 Consensus size: 19
16092110 ACATAACTTA
*
16092120 TTAATATTTATATATAGTT
1 TTAATATTTATATATATTT
16092139 TTAATA--TA-A-ATATTT
1 TTAATATTTATATATATTT
*
16092154 TTAAAATTTATATATATTT
1 TTAATATTTATATATATTT
16092173 TTAA
1 TTAA
16092177 AAATTGATAC
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
15 10 0.31
16 1 0.03
17 4 0.12
18 1 0.03
19 16 0.50
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.56
Consensus pattern (19 bp):
TTAATATTTATATATATTT
Found at i:16092233 original size:23 final size:20
Alignment explanation
Indices: 16092183--16092552 Score: 99
Period size: 18 Copynumber: 19.4 Consensus size: 20
16092173 TTAAAAATTG
16092183 ATACATTACATAACTTACATA
1 ATACA-TACATAACTTACATA
*
16092204 ACCTACATACATAAACTTACA-C
1 A--TACATACAT-AACTTACATA
*
16092226 ATA-ATACATAACTTATATA
1 ATACATACATAACTTACATA
* **
16092245 ACTTAAATTTATAA--TACATA
1 A--TACATACATAACTTACATA
*
16092265 ATA-ATACATAACCTACATA
1 ATACATACATAACTTACATA
* * *
16092284 A-A-TTAAATAAGTTACATA
1 ATACATACATAACTTACATA
**
16092302 ATAC--ACA-AA-AAACA-A
1 ATACATACATAACTTACATA
* *
16092317 AAACTTACATAACTTACATA
1 ATACATACATAACTTACATA
*
16092337 ATATCCTACATAATAACTTACATA
1 ATA-CATAC---ATAACTTACATA
*
16092361 ATA-ATACATAACCTACATA
1 ATACATACATAACTTACATA
* * * *
16092380 A-A-TTAAATAAGTTATATA
1 ATACATACATAACTTACATA
16092398 ATAC--ACA-AAC--ACA-A
1 ATACATACATAACTTACATA
* *
16092412 AAACTTACATAACTTAC---
1 ATACATACATAACTTACATA
16092429 ATA-ATACATAACTTACATA
1 ATACATACATAACTTACATA
16092448 ACCTACTTAATACATAACTTACAT-
1 A--TAC---ATACATAACTTACATA
*
16092472 A-ACTTACATAA--TACAT-
1 ATACATACATAACTTACATA
* *
16092488 A-ACTTACATAACTTATATA
1 ATACATACATAACTTACATA
* *
16092507 AGACAACTTACATAATTTAC-T-
1 ATAC-A--TACATAACTTACATA
16092528 -TA-ATACATAACTTACATA
1 ATACATACATAACTTACATA
16092546 ATACATA
1 ATACATA
16092553 ACTTACATAA
Statistics
Matches: 262, Mismatches: 40, Indels: 95
0.66 0.10 0.24
Matches are distributed among these distances:
14 4 0.02
15 6 0.02
16 45 0.17
17 19 0.07
18 54 0.21
19 37 0.14
20 17 0.06
21 11 0.04
22 16 0.06
23 22 0.08
24 16 0.06
25 15 0.06
ACGTcount: A:0.51, C:0.18, G:0.01, T:0.30
Consensus pattern (20 bp):
ATACATACATAACTTACATA
Found at i:16092302 original size:9 final size:9
Alignment explanation
Indices: 16092259--16092673 Score: 102
Period size: 9 Copynumber: 47.0 Consensus size: 9
16092249 AAATTTATAA
*
16092259 TACATAATAA
1 TACATAA-AT
**
16092269 TACATAACC
1 TACATAAAT
16092278 TACATAAAT
1 TACATAAAT
* *
16092287 TAAATAAGT
1 TACATAAAT
16092296 TACAT-AA-
1 TACATAAAT
* *
16092303 TACACAAAA
1 TACATAAAT
* *
16092312 AACAAAAACT
1 TACATAAA-T
*
16092322 TACATAACT
1 TACATAAAT
16092331 TACATAATAT
1 TACATAA-AT
16092341 CCTACATAATAACT
1 --TACAT-A-AA-T
*
16092355 TACATAATAA
1 TACATAA-AT
**
16092365 TACATAACC
1 TACATAAAT
16092374 TACATAAAT
1 TACATAAAT
* *
16092383 TAAATAAGT
1 TACATAAAT
*
16092392 TATAT-AA-
1 TACATAAAT
*
16092399 TACACAAA-
1 TACATAAAT
* *
16092407 CACAAAAACT
1 TACATAAA-T
*
16092417 TACATAACT
1 TACATAAAT
16092426 TACAT-AA-
1 TACATAAAT
*
16092433 TACATAACT
1 TACATAAAT
**
16092442 TACATAACC
1 TACATAAAT
*
16092451 TAC-TTAA-
1 TACATAAAT
*
16092458 TACATAACT
1 TACATAAAT
*
16092467 TACATAACT
1 TACATAAAT
16092476 TACAT-AA-
1 TACATAAAT
*
16092483 TACATAACT
1 TACATAAAT
*
16092492 TACATAACT
1 TACATAAAT
*
16092501 TATATAAGACAACT
1 TACAT---A-AA-T
*
16092515 TACATAATT
1 TACATAAAT
*
16092524 TAC-TTAA-
1 TACATAAAT
*
16092531 TACATAACT
1 TACATAAAT
16092540 TACAT-AA-
1 TACATAAAT
*
16092547 TACATAACT
1 TACATAAAT
**
16092556 TACATAACC
1 TACATAAAT
16092565 TACAT-AA-
1 TACATAAAT
* *
16092572 GACATAACT
1 TACATAAAT
*
16092581 TACATAAGT
1 TACATAAAT
*
16092590 TTCAT-AA-
1 TACATAAAT
* *
16092597 TACACAACT
1 TACATAAAT
*
16092606 TACATAACT
1 TACATAAAT
16092615 TACAT-AA-
1 TACATAAAT
* *
16092622 TACACAACT
1 TACATAAAT
*
16092631 TACATAATT
1 TACATAAAT
*
16092640 TAC-TTAA-
1 TACATAAAT
*
16092647 TACATAACT
1 TACATAAAT
*
16092656 TACATAACT
1 TACATAAAT
16092665 TACATAAAT
1 TACATAAAT
16092674 ATATGATGTG
Statistics
Matches: 296, Mismatches: 73, Indels: 73
0.67 0.17 0.17
Matches are distributed among these distances:
7 42 0.14
8 36 0.12
9 167 0.56
10 27 0.09
11 3 0.01
12 11 0.04
13 3 0.01
14 7 0.02
ACGTcount: A:0.50, C:0.19, G:0.01, T:0.30
Consensus pattern (9 bp):
TACATAAAT
Found at i:16092303 original size:34 final size:34
Alignment explanation
Indices: 16092265--16092671 Score: 147
Period size: 34 Copynumber: 12.1 Consensus size: 34
16092255 ATAATACATA
*
16092265 ATAATACATAACCTACATAAATTAAATAAGTTAC
1 ATAATACATAACCTACATAAATTAAATAACTTAC
* *** * *
16092299 ATAATACACAAAAAACAAAAACTTACATAACTTAC
1 ATAATACATAACCTACATAAA-TTAAATAACTTAC
* * *
16092334 ATAAT--AT--CCTACAT-AA-TAACTTACATA-
1 ATAATACATAACCTACATAAATTAAATAACTTAC
* *
16092361 ATAATACATAACCTACATAAATTAAATAAGTTAT
1 ATAATACATAACCTACATAAATTAAATAACTTAC
* * * *
16092395 ATAATACACAAAC-ACAAAAACTTACATAACTTAC
1 ATAATACATAACCTACATAAA-TTAAATAACTTAC
*
16092429 ATAATACATAACTTACATAACCTACTTAATACATAACTTAC
1 ATAATACATAACCTACATAA---A-TT-A-A-ATAACTTAC
* * *
16092470 ATAACTTACATAA--TACATAACTTACATAACTTAT
1 ATAA--TACATAACCTACATAAATTAAATAACTTAC
* * * **
16092504 ATAAGAC--AACTTACATAATTTACTTAA--TAC
1 ATAATACATAACCTACATAAATTAAATAACTTAC
* * *
16092534 ATAACTTACATAA--TACATAACTTACATAACCTAC
1 ATAA--TACATAACCTACATAAATTAAATAACTTAC
* * * **
16092568 ATAAGACATAACTTACATAAGTTTCATAA--TAC
1 ATAATACATAACCTACATAAATTAAATAACTTAC
* * * *
16092600 ACAACTTACATAACTTACAT-AA-TACACAACTTAC
1 ATAA--TACATAACCTACATAAATTAAATAACTTAC
* * *
16092634 ATAATTTACTTAA--TACATAACTTACATAACTTAC
1 ATAA--TACATAACCTACATAAATTAAATAACTTAC
16092668 ATAA
1 ATAA
16092672 ATATATGATG
Statistics
Matches: 285, Mismatches: 54, Indels: 68
0.70 0.13 0.17
Matches are distributed among these distances:
27 5 0.02
28 7 0.02
29 2 0.01
30 10 0.04
31 10 0.04
32 56 0.20
33 16 0.06
34 123 0.43
35 21 0.07
36 1 0.00
37 2 0.01
38 4 0.01
39 1 0.00
41 20 0.07
43 7 0.02
ACGTcount: A:0.50, C:0.19, G:0.01, T:0.30
Consensus pattern (34 bp):
ATAATACATAACCTACATAAATTAAATAACTTAC
Found at i:16092348 original size:12 final size:12
Alignment explanation
Indices: 16092325--16092364 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
16092315 AAAAACTTAC
*
16092325 ATAACTTACATA
1 ATAACCTACATA
*
16092337 ATATCCTACATA
1 ATAACCTACATA
*
16092349 ATAACTTACATA
1 ATAACCTACATA
16092361 ATAA
1 ATAA
16092365 TACATAACCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (12 bp):
ATAACCTACATA
Found at i:16092370 original size:96 final size:95
Alignment explanation
Indices: 16092259--16092434 Score: 325
Period size: 96 Copynumber: 1.8 Consensus size: 95
16092249 AAATTTATAA
16092259 TACATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACACAAAAAACAAAAACTTA
1 TACATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACAC-AAAAACAAAAACTTA
16092324 CATAACTTACATAATATCCTACATAATAACT
65 CATAACTTACATAATATCCTACATAATAACT
* *
16092355 TACATAATAATACATAACCTACATAAATTAAATAAGTTATATAATACACAAACACAAAAACTTAC
1 TACATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACACAAAAACAAAAACTTAC
16092420 ATAACTTACATAATA
66 ATAACTTACATAATA
16092435 CATAACTTAC
Statistics
Matches: 78, Mismatches: 2, Indels: 1
0.96 0.02 0.01
Matches are distributed among these distances:
95 30 0.38
96 48 0.62
ACGTcount: A:0.55, C:0.17, G:0.01, T:0.27
Consensus pattern (95 bp):
TACATAATAATACATAACCTACATAAATTAAATAAGTTACATAATACACAAAAACAAAAACTTAC
ATAACTTACATAATATCCTACATAATAACT
Found at i:16092438 original size:16 final size:17
Alignment explanation
Indices: 16092417--16092671 Score: 209
Period size: 16 Copynumber: 15.4 Consensus size: 17
16092407 CACAAAAACT
16092417 TACATAACTTACATAA-
1 TACATAACTTACATAAC
16092433 TACATAACTTACATAACC
1 TACATAACTTACATAA-C
*
16092451 TACTTAA--TACATAAC
1 TACATAACTTACATAAC
16092466 TTACATAACTTACATAA-
1 -TACATAACTTACATAAC
16092483 TACATAACTTACATAAC
1 TACATAACTTACATAAC
* *
16092500 TTATATAA--GAC--AAC
1 -TACATAACTTACATAAC
* *
16092514 TTACATAATTTACTTAA-
1 -TACATAACTTACATAAC
16092531 TACATAACTTACATAA-
1 TACATAACTTACATAAC
16092547 TACATAACTTACATAACC
1 TACATAACTTACATAA-C
*
16092565 TACATAA--GACATAAC
1 TACATAACTTACATAAC
* *
16092580 TTACATAAGTTTCATAA-
1 -TACATAACTTACATAAC
*
16092597 TACACAACTTACATAAC
1 TACATAACTTACATAAC
*
16092614 TTACATAA--TACACAAC
1 -TACATAACTTACATAAC
* *
16092630 TTACATAATTTACTTAA-
1 -TACATAACTTACATAAC
16092647 TACATAACTTACATAAC
1 TACATAACTTACATAAC
16092664 TTACATAA
1 -TACATAA
16092672 ATATATGATG
Statistics
Matches: 197, Mismatches: 20, Indels: 42
0.76 0.08 0.16
Matches are distributed among these distances:
14 10 0.05
15 2 0.01
16 134 0.68
18 51 0.26
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (17 bp):
TACATAACTTACATAAC
Found at i:16092441 original size:25 final size:24
Alignment explanation
Indices: 16092413--16092671 Score: 226
Period size: 25 Copynumber: 10.5 Consensus size: 24
16092403 CAAACACAAA
16092413 AACTTACATAACTTACATAA-TACAT
1 AACTTACATAA--TACATAACTACAT
*
16092438 AACTTACATAACCTACTTAA-TACAT
1 AACTTACATAA--TACATAACTACAT
16092463 AACTTACATAACTTACATAA-TACAT
1 AACTTACATAA--TACATAACTACAT
* *
16092488 AACTTACATAACTTATATAA-GAC--
1 AACTTACATAA--TACATAACTACAT
*
16092511 AACTTACATAATTTACTTAA-TACAT
1 AACTTACATAA--TACATAACTACAT
16092536 AACTTACATAATACATAACTTACAT
1 AACTTACATAATACATAAC-TACAT
* *
16092561 AACCTACATAAGACATAACTTACAT
1 AACTTACATAATACATAAC-TACAT
* * *
16092586 AAGTTTCATAATACACAACTTACAT
1 AACTTACATAATACATAAC-TACAT
*
16092611 AACTTACATAATACACAACTTACAT
1 AACTTACATAATACATAAC-TACAT
* *
16092636 AATTTACTTAATACATAACTTACAT
1 AACTTACATAATACATAAC-TACAT
16092661 AACTTACATAA
1 AACTTACATAA
16092672 ATATATGATG
Statistics
Matches: 205, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
23 25 0.12
25 180 0.88
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (24 bp):
AACTTACATAATACATAACTACAT
Found at i:16092476 original size:50 final size:50
Alignment explanation
Indices: 16092413--16092671 Score: 317
Period size: 50 Copynumber: 5.4 Consensus size: 50
16092403 CAAACACAAA
*
16092413 AACTTACATAACTTACATAATACATAACTTACATAACCTACTTAATACAT
1 AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
*
16092463 AACTTACATAACTTACATAATACATAACTTACATAACTTA-TATAAGAC--
1 AACTTACATAACTTACATAATACATAACTTACATAACTTACT-TAATACAT
* *
16092511 AACTTACATAA--T---T--TACTTAA--TACATAACTTACATAATACAT
1 AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
* * * * * *
16092552 AACTTACATAACCTACATAAGACATAACTTACATAAGTTTCATAATACAC
1 AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
* *
16092602 AACTTACATAACTTACATAATACACAACTTACATAATTTACTTAATACAT
1 AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
16092652 AACTTACATAACTTACATAA
1 AACTTACATAACTTACATAA
16092672 ATATATGATG
Statistics
Matches: 179, Mismatches: 17, Indels: 26
0.81 0.08 0.12
Matches are distributed among these distances:
39 16 0.09
41 17 0.09
43 2 0.01
46 2 0.01
48 16 0.09
49 1 0.01
50 125 0.70
ACGTcount: A:0.47, C:0.20, G:0.01, T:0.32
Consensus pattern (50 bp):
AACTTACATAACTTACATAATACATAACTTACATAACTTACTTAATACAT
Found at i:16098703 original size:84 final size:85
Alignment explanation
Indices: 16098610--16098800 Score: 260
Period size: 86 Copynumber: 2.2 Consensus size: 85
16098600 AACGCTGATA
* * *
16098610 AAAGAACATGACCTTTAGTGGCGTTTGCGGAAGAAGCGCCGCCAA-AACATGATCTTTAGCAGG-
1 AAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAACGCCGCCAAGAACATGATCTTTAGC-GGC
16098673 ATTTGTGGAAAAAGTGCCGCT
65 ATTTGTGGAAAAAGTGCCGCT
* * *
16098694 AAAGAACATGATCTTTAGCGGCGTTTGTGGAAAAAACGCCGCTAAGGAACATGATCTTTAGCGGC
1 AAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAACGCCGCCAA-GAACATGATCTTTAGCGGC
*
16098759 GTTTGTGGAAAAAGTGCCGCT
65 ATTTGTGGAAAAAGTGCCGCT
* * *
16098780 AAAGACCCTGACTTTTAGCGG
1 AAAGAACATGACCTTTAGCGG
16098801 TTTTTTTTTG
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
84 39 0.42
85 2 0.02
86 52 0.56
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (85 bp):
AAAGAACATGACCTTTAGCGGCGTTTGCGGAAAAAACGCCGCCAAGAACATGATCTTTAGCGGCA
TTTGTGGAAAAAGTGCCGCT
Found at i:16098797 original size:86 final size:84
Alignment explanation
Indices: 16098582--16098800 Score: 255
Period size: 84 Copynumber: 2.6 Consensus size: 84
16098572 ACCAAACAAA
* * * * * * * *
16098582 TAGCGGCGTTTGTGTAAAAA-CGCTGATAAAAGAACATGACCTTTAGTGGCGTTTGCGGAAGAAG
1 TAGCGGCGTTTGTGGAAAAAGTGCCGCT-AAAGAACATGACTTTTAGCGGCGTTTGCGGAAAAAA
16098646 CGCCGCCAAAACATGATCTT
65 CGCCGCCAAAACATGATCTT
* *
16098666 TAGCAGG-ATTTGTGGAAAAAGTGCCGCTAAAGAACATGA-TCTTTAGCGGCGTTTGTGGAAAAA
1 TAGC-GGCGTTTGTGGAAAAAGTGCCGCTAAAGAACATGACT-TTTAGCGGCGTTTGCGGAAAAA
*
16098729 ACGCCGCTAAGGAACATGATCTT
64 ACGCCGCCAA--AACATGATCTT
* *
16098752 TAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGACCCTGACTTTTAGCGG
1 TAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGAACATGACTTTTAGCGG
16098801 TTTTTTTTTG
Statistics
Matches: 114, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
84 53 0.46
85 8 0.07
86 52 0.46
87 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.24
Consensus pattern (84 bp):
TAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGAACATGACTTTTAGCGGCGTTTGCGGAAAAAAC
GCCGCCAAAACATGATCTT
Found at i:16098800 original size:43 final size:43
Alignment explanation
Indices: 16098582--16098784 Score: 234
Period size: 43 Copynumber: 4.8 Consensus size: 43
16098572 ACCAAACAAA
* * * * *
16098582 TAGCGGCGTTTGTGTAAAAA-CGCTGATAAAAGAACATGACCTT
1 TAGCGGCGTTTGTGGAAAAAGTGCCGCT-AAAGAACATGATCTT
* * * * *
16098625 TAGTGGCGTTTGCGGAAGAAGCGCCGC-CAA-AACATGATCTT
1 TAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGAACATGATCTT
*
16098666 TAGCAGG-ATTTGTGGAAAAAGTGCCGCTAAAGAACATGATCTT
1 TAGC-GGCGTTTGTGGAAAAAGTGCCGCTAAAGAACATGATCTT
** *
16098709 TAGCGGCGTTTGTGGAAAAAACGCCGCTAAGGAACATGATCTT
1 TAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGAACATGATCTT
16098752 TAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGA
1 TAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGA
16098785 CCCTGACTTT
Statistics
Matches: 134, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
41 29 0.22
42 8 0.06
43 93 0.69
44 4 0.03
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.24
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGAAAAAGTGCCGCTAAAGAACATGATCTT
Found at i:16103626 original size:20 final size:21
Alignment explanation
Indices: 16103598--16103636 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 21
16103588 AAATAGTAGT
*
16103598 TTAGATGTGGAA-TAAAATGG
1 TTAGATGTGCAAGTAAAATGG
*
16103618 TTAGGTGTGCAAGTAAAAT
1 TTAGATGTGCAAGTAAAAT
16103637 TGATTTGTTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 10 0.62
21 6 0.38
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.31
Consensus pattern (21 bp):
TTAGATGTGCAAGTAAAATGG
Found at i:16121787 original size:38 final size:38
Alignment explanation
Indices: 16121736--16121817 Score: 164
Period size: 38 Copynumber: 2.2 Consensus size: 38
16121726 TTGGGGGATA
16121736 GTTTAGTGGTAAATTGATTGAATTTATACTGAATTTTG
1 GTTTAGTGGTAAATTGATTGAATTTATACTGAATTTTG
16121774 GTTTAGTGGTAAATTGATTGAATTTATACTGAATTTTG
1 GTTTAGTGGTAAATTGATTGAATTTATACTGAATTTTG
16121812 GTTTAG
1 GTTTAG
16121818 ATTCGCTTAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 44 1.00
ACGTcount: A:0.28, C:0.02, G:0.22, T:0.48
Consensus pattern (38 bp):
GTTTAGTGGTAAATTGATTGAATTTATACTGAATTTTG
Found at i:16121799 original size:21 final size:21
Alignment explanation
Indices: 16121737--16121799 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 21
16121727 TGGGGGATAG
16121737 TTTAGTGGTAAATTGATTGAA
1 TTTAGTGGTAAATTGATTGAA
** * *
16121758 TTTA-TACTGAATT--TTG-G
1 TTTAGTGGTAAATTGATTGAA
16121775 TTTAGTGGTAAATTGATTGAA
1 TTTAGTGGTAAATTGATTGAA
16121796 TTTA
1 TTTA
16121800 TACTGAATTT
Statistics
Matches: 30, Mismatches: 8, Indels: 8
0.65 0.17 0.17
Matches are distributed among these distances:
17 4 0.13
18 9 0.30
20 9 0.30
21 8 0.27
ACGTcount: A:0.30, C:0.02, G:0.21, T:0.48
Consensus pattern (21 bp):
TTTAGTGGTAAATTGATTGAA
Found at i:16138427 original size:42 final size:42
Alignment explanation
Indices: 16138359--16138621 Score: 364
Period size: 42 Copynumber: 6.3 Consensus size: 42
16138349 AAGGAAAGCA
*
16138359 TTCATTGCATTTAGAAGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * *
16138401 TTCATTGCATTTAGAGGCTCACGTGTGGAGATCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* *
16138443 TTCATTACATTTAAAGGCCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
** *
16138485 TTCATTGCATTTAGATACCCAGGTGTGGGGGTCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * **
16138527 TTCATTGCATCTAGAGGCCCAGGTATGGAGGTCTGTTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
* * * * *
16138569 TTCCTTGCATTTAAAGGCCCAGGTTTAGAGATCCATTTACTT
1 TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
16138611 TTCATTGCATT
1 TTCATTGCATT
16138622 CTATATGAAG
Statistics
Matches: 191, Mismatches: 30, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 191 1.00
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (42 bp):
TTCATTGCATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTT
Found at i:16139525 original size:50 final size:49
Alignment explanation
Indices: 16139471--16139690 Score: 128
Period size: 50 Copynumber: 4.4 Consensus size: 49
16139461 AAAAAAAGAA
*
16139471 AAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTTAGCCATTTTAAAGG
1 AAAGTTTAAATTTTTAAAATAAAAATATG-TTTTTTAGCCATTTTAAAGG
* * * * * * **
16139521 AAAGTTAAAATTTTTAAAACAAAATTTTGAATTTTTTTTCAACTATTTCTAAATA
1 AAAGTTTAAATTTTTAAAATAAAA--AT--ATGTTTTTT-AGCCATTT-TAAAGG
** * * * * *
16139576 AAAGTTTTGATCTTTAAGA-AAAATTATGTTTATT-----TTTAAAAGAG
1 AAAGTTTAAATTTTTAAAATAAAAATATGTTTTTTAGCCATTTTAAAG-G
* * *
16139620 AAAGTTTAAATTTTTTAAATAAAAATATGTTTTTTAGTCATTTTAATGG
1 AAAGTTTAAATTTTTAAAATAAAAATATGTTTTTTAGCCATTTTAAAGG
16139669 AAAAAGTTTAAATTTTTTAAAA
1 --AAAGTTTAAA-TTTTTAAAA
16139691 CAAAGTTTTG
Statistics
Matches: 125, Mismatches: 29, Indels: 30
0.68 0.16 0.16
Matches are distributed among these distances:
43 3 0.02
44 17 0.14
45 13 0.10
49 1 0.01
50 34 0.27
51 10 0.08
52 11 0.09
53 6 0.05
54 12 0.10
55 18 0.14
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (49 bp):
AAAGTTTAAATTTTTAAAATAAAAATATGTTTTTTAGCCATTTTAAAGG
Found at i:16139651 original size:149 final size:147
Alignment explanation
Indices: 16139464--16139747 Score: 419
Period size: 149 Copynumber: 1.9 Consensus size: 147
16139454 TTTTTAAAAA
*
16139464 AAAAGAAAAAGTTTAGATTTTTAAAATAAAAATATGTTTTTTTAGCCATTTTAAAGG-AAAG-TT
1 AAAAGAAAAAGTTTAAATTTTTAAAATAAAAATATG-TTTTTTAGCCATTTTAAAGGAAAAGTTT
* *
16139527 AAAATTTTTAAAACAAAATTTTGAATTTTTTTTCAACTATTTCTAAATAAAAGTTTTGATCTTTA
65 AAAATTTTTAAAACAAAATTTTG-A-TCTTTTTCAACTATTTCGAAAT-AAAGTTTTGATCTTTA
16139592 AGAAAAATTATGTTTATTTTT
127 AGAAAAATTATGTTTATTTTT
* * * *
16139613 AAAAGAGAAAGTTTAAATTTTTTAAATAAAAATATGTTTTTTAGTCATTTTAATGGAAAAAGTTT
1 AAAAGAAAAAGTTTAAATTTTTAAAATAAAAATATGTTTTTTAGCCATTTTAAAGG-AAAAGTTT
* * *
16139678 AAATTTTTTAAAACAAAGTTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATTTTTAAGA
65 AAAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATCTTTAAGA
16139743 AAAAT
130 AAAAT
16139748 AGTGATTTTT
Statistics
Matches: 122, Mismatches: 10, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
148 41 0.34
149 53 0.43
150 5 0.04
151 23 0.19
ACGTcount: A:0.42, C:0.05, G:0.10, T:0.44
Consensus pattern (147 bp):
AAAAGAAAAAGTTTAAATTTTTAAAATAAAAATATGTTTTTTAGCCATTTTAAAGGAAAAGTTTA
AAATTTTTAAAACAAAATTTTGATCTTTTTCAACTATTTCGAAATAAAGTTTTGATCTTTAAGAA
AAATTATGTTTATTTTT
Found at i:16143223 original size:59 final size:59
Alignment explanation
Indices: 16143131--16143248 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
16143121 AATATTCAAA
16143131 GCGAAAAAGAGGGATTCTTAAGAAAGCAAAAGAGCTTTCTATATTGTGTGATGTTGAAG
1 GCGAAAAAGAGGGATTCTTAAGAAAGCAAAAGAGCTTTCTATATTGTGTGATGTTGAAG
16143190 GCGAAAAAGAGGGATTCTTAAGAAAGCAAAAGAGCTTTCTATATTGTGTGATGTTGAAG
1 GCGAAAAAGAGGGATTCTTAAGAAAGCAAAAGAGCTTTCTATATTGTGTGATGTTGAAG
16143249 TTGTTCTTTT
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.37, C:0.08, G:0.27, T:0.27
Consensus pattern (59 bp):
GCGAAAAAGAGGGATTCTTAAGAAAGCAAAAGAGCTTTCTATATTGTGTGATGTTGAAG
Found at i:16143599 original size:7 final size:7
Alignment explanation
Indices: 16143587--16143613 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
16143577 CTACAAATTC
16143587 TTTTTCT
1 TTTTTCT
16143594 TTTTTCT
1 TTTTTCT
16143601 TTTTTCT
1 TTTTTCT
16143608 TTTTTC
1 TTTTTC
16143614 GCCAAGAGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTTCT
Found at i:16148343 original size:26 final size:26
Alignment explanation
Indices: 16148313--16148363 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
16148303 ACCAATGAAC
*
16148313 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
16148339 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
16148364 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:16148407 original size:103 final size:101
Alignment explanation
Indices: 16148179--16148441 Score: 404
Period size: 103 Copynumber: 2.6 Consensus size: 101
16148169 TAACCGTTAT
* *
16148179 TGGTGGATCTCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
16148244 AATCAGCACATAGCAACCCCCTTTATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTATTTCAAAGATA
*
16148280 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTC-GGG
1 TGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGG
16148343 GAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
65 GAATCAGCACATAGCAACCCCCTTT---ATTTCAAAGATA
* * * **
16148383 TGGTGGATCACGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
16148442 TTTATATACA
Statistics
Matches: 148, Mismatches: 9, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
100 28 0.19
101 56 0.38
103 63 0.43
104 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.19
Consensus pattern (101 bp):
TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTATTTCAAAGATA
Found at i:16148802 original size:29 final size:29
Alignment explanation
Indices: 16148769--16148832 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
16148759 TAATCCACCA
16148769 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
16148798 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
16148828 CCCAA
1 CCCAA
16148833 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:16148806 original size:30 final size:30
Alignment explanation
Indices: 16148776--16148832 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
16148766 CCACCCAACT
16148776 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
16148805 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
16148833 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:16155786 original size:25 final size:25
Alignment explanation
Indices: 16155758--16155807 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
16155748 CACCAATGAA
*
16155758 TCGGGGAATCAGCACTTAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
16155783 TCGGGGAATCAGCACATAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
16155808 CTTCACATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (25 bp):
TCGGGGAATCAGCACATAGCAACCC
Found at i:16155800 original size:100 final size:99
Alignment explanation
Indices: 16155627--16155881 Score: 365
Period size: 99 Copynumber: 2.6 Consensus size: 99
16155617 TAGCCGTTAT
*
16155627 TGGTGGATC-CGCACTTAGCACCACCACTGAATC-GGGAATCAGCACTTAGCAACCCCTCGGGGA
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAA-CCCTCGGGGA
***
16155690 ATCAGCACATAGCAACCCCCTTTTTATTTCAAAGATA
65 ATCAGCACATAGCAA-CCCCTTCACATTTCAAA-ATA
16155727 TGGT-GAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGA
1 TGGTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGA
16155790 ATCAGCACATAGCAACCCCTTCACATTTCAAAATA
65 ATCAGCACATAGCAACCCCTTCACATTTCAAAATA
* * * **
16155825 TGGTGGATCACGCACATAGCACCACCCATAAATCGGGGAATCAGCACACAGCAACCC
1 TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCC
16155882 CTTTTATATA
Statistics
Matches: 141, Mismatches: 9, Indels: 11
0.88 0.06 0.07
Matches are distributed among these distances:
98 7 0.05
99 62 0.44
100 53 0.38
101 19 0.13
ACGTcount: A:0.31, C:0.30, G:0.19, T:0.19
Consensus pattern (99 bp):
TGGTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGAA
TCAGCACATAGCAACCCCTTCACATTTCAAAATA
Found at i:16160816 original size:25 final size:25
Alignment explanation
Indices: 16160788--16160837 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
16160778 CACCACTGAA
*
16160788 TCGGGGAATCAGCACTTAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
16160813 TCGGGGAATCAGCACATAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
16160838 CCTTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (25 bp):
TCGGGGAATCAGCACATAGCAACCC
Found at i:16160917 original size:25 final size:25
Alignment explanation
Indices: 16160889--16160938 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
16160879 CACCAATGAA
*
16160889 TCGGGGAATCAGCACTTAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
16160914 TCGGGGAATCAGCACATAGCAACCC
1 TCGGGGAATCAGCACATAGCAACCC
16160939 CCTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.30, C:0.32, G:0.24, T:0.14
Consensus pattern (25 bp):
TCGGGGAATCAGCACATAGCAACCC
Found at i:16160933 original size:101 final size:101
Alignment explanation
Indices: 16160758--16161004 Score: 406
Period size: 101 Copynumber: 2.4 Consensus size: 101
16160748 AGCCGTTATT
* *
16160758 GTGGATCCCGCACTTAGCACCACCACTGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGAATC
1 GTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGAATC
***
16160823 AGCACATAGCAACCCCCTTTTTATTTCAAAGATATG
66 AGCACATAGCAACCCCCTTCACATTTCAAAGATATG
16160859 GTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGAAT
1 GTGGATCA-CGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGAAT
16160923 CAGCACATAGCAACCCCCTTCACATTTCAAAGATATG
65 CAGCACATAGCAACCCCCTTCACATTTCAAAGATATG
* * *
16160960 GTGGATCACGCACATAGCACCACCCATAAATCGGGGAATCAGCAC
1 GTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCAC
16161005 ACAGCAACAC
Statistics
Matches: 136, Mismatches: 8, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
101 135 0.99
102 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.20, T:0.19
Consensus pattern (101 bp):
GTGGATCACGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCTCGGGGAATC
AGCACATAGCAACCCCCTTCACATTTCAAAGATATG
Found at i:16166380 original size:23 final size:23
Alignment explanation
Indices: 16166323--16166382 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 23
16166313 AAAACATGTC
*
16166323 AATAATAA-TTTAAAATAATAGT
1 AATAATAAGTTTAAAATAATAAT
* * *
16166345 -ATATTACGTTTTAAAATTATAAT
1 AATAATAAG-TTTAAAATAATAAT
16166368 AATAATAAGTTTAAA
1 AATAATAAGTTTAAA
16166383 GGTAATGTCA
Statistics
Matches: 29, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
21 5 0.17
23 18 0.62
24 6 0.21
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (23 bp):
AATAATAAGTTTAAAATAATAAT
Found at i:16166516 original size:3 final size:3
Alignment explanation
Indices: 16166510--16166543 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
16166500 ATAAAGAAGA
16166510 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
16166544 GGATTAAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:16166587 original size:5 final size:6
Alignment explanation
Indices: 16166568--16166624 Score: 60
Period size: 6 Copynumber: 9.2 Consensus size: 6
16166558 ATTGGAATTC
* * *
16166568 AAATAA AAATAA AAATAA AACACTAC AAATAG AAATAA AAAGAA AAATAA
1 AAATAA AAATAA AAATAA AA-A-TAA AAATAA AAATAA AAATAA AAATAA
*
16166618 AGATAA A
1 AAATAA A
16166625 CTAAGTTGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
6 37 0.86
7 2 0.05
8 4 0.09
ACGTcount: A:0.75, C:0.05, G:0.05, T:0.14
Consensus pattern (6 bp):
AAATAA
Found at i:16168108 original size:50 final size:50
Alignment explanation
Indices: 16168043--16168690 Score: 308
Period size: 50 Copynumber: 12.9 Consensus size: 50
16168033 AACTGCAATG
*
16168043 TCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCATCGC
1 TCGGGG-AGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGC
* * * * * * ** **
16168094 CCGGGGAGTAAGATTCGCTGTTTTAGCTTTAATCT-TCTTAACAACAAT-G-
1 TCGGGGAGCAAGATTCACCGTTGTGGCTTTAATCTGT-TCCACTGC-ATCGC
* * *
16168143 TCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGAACCGC
1 TCGGGG-AGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGC
* * * * * * * **
16168194 -CAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAAT-G-
1 TC-GGGGAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC-ATCGC
* *
16168243 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGTA-C-C
1 TCGGGGA-GCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGC
* * ** * * * * **
16168292 TCCTGGGAAGTAAGATTTGCTGTTCTAGCTTTAATCTTTTTAACTGCAAT-G-
1 T-C-GGGGAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC-ATCGC
* ** * * *
16168343 TCGGGGAAACAAGATTCGTCGTTGTGGCATTAATCTGTTCCACTGTACCGC
1 TCGGGG-AGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGC
* * * * * * * **
16168394 TAGGGAAGTAAGATTCGCTGCTGTAGG-TTTAATCTTTTTAACTGCAAT-G-
1 TCGGGGAGCAAGATTCACCGTTGT-GGCTTTAATCTGTTCCACTGC-ATCGC
* *
16168443 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGC
1 TCGGGGA-GCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGC
* * ** * * * * **
16168494 -CAGGGAAGTAAGATTTGCTGCTGTAGCTTTAATCTTTTTAACTGCAAT-GC
1 TC-GGGGAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGC-ATCGC
*
16168544 -CTGGGAGGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGC
1 TCGGGGA-GCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGC
* * * *** * **
16168594 TTGGGGCGGTAAGATTCACTACTGTAGCTTTAATCCT-TTTAACTGCAAT-G-
1 TCGGGG-AGCAAGATTCACCGTTGTGGCTTTAAT-CTGTTCCACTGC-ATCGC
* *
16168644 TCAGGGAGGCAAGATTCACTGTTGTGGCTTTAATCTGTTCCACTGCA
1 TCGGGGA-GCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCA
16168691 CCGCCTGGGA
Statistics
Matches: 423, Mismatches: 138, Indels: 74
0.67 0.22 0.12
Matches are distributed among these distances:
49 31 0.07
50 328 0.78
51 60 0.14
52 4 0.01
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (50 bp):
TCGGGGAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCCACTGCATCGC
Found at i:16168172 original size:100 final size:100
Alignment explanation
Indices: 16167979--16168701 Score: 1000
Period size: 100 Copynumber: 7.2 Consensus size: 100
16167969 TAAGATTTGT
** *
16167979 TGTTCCACTGCACCGCTTGAGAAGTAAGATTCGCTG-TGGTAGCTTTAATC-TTTTAACTGCAAT
1 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGCT-GTAGCTTTAATCTTTTTAACTGCAAT
* * *
16168042 GTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATC
65 GTCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
* * * * * * **
16168078 TGTTCCACTGCATCGCCCGGGGAGTAAGATTCGCTGTTTTAGCTTTAATCTTCTTAACAACAATG
1 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATG
* * *
16168143 TCGGGGAAGCAAGATTCACCGATGTGGCTTTAATC
66 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
*
16168178 TGTTCCACTGAACCGCCAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATG
1 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATG
16168243 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
66 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
* * * * * *
16168278 TGTTCCACTGTACCTCCTGGGAAGTAAGATTTGCTGTTCTAGCTTTAATCTTTTTAACTGCAATG
1 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATG
* ** ** *
16168343 TCGGGGAAACAAGATTCGTCGTTGTGGCATTAATC
66 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
* * *
16168378 TGTTCCACTGTACCGCTAGGGAAGTAAGATTCGCTGCTGTAGGTTTAATCTTTTTAACTGCAATG
1 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATG
16168443 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
66 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
*
16168478 TGTTCCACTGCACCGCCAGGGAAGTAAGATTTGCTGCTGTAGCTTTAATCTTTTTAACTGCAATG
1 TGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATG
* *
16168543 CCTGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
66 TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
* ** ** * * *
16168578 TGTTCCACTGCATCGCTTGGGGCGGTAAGATTCACTACTGTAGCTTTAATCCTTTTAACTGCAAT
1 TGTTCCACTGCACCGC-CAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAAT
*
16168643 GTCAGGGAGGCAAGATTCACTGTTGTGGCTTTAATC
65 GTCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
*
16168679 TGTTCCACTGCACCGCCTGGGAA
1 TGTTCCACTGCACCGCCAGGGAA
16168702 AATAAGATCT
Statistics
Matches: 552, Mismatches: 69, Indels: 5
0.88 0.11 0.01
Matches are distributed among these distances:
99 42 0.08
100 422 0.76
101 88 0.16
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.32
Consensus pattern (100 bp):
TGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACTGCAATG
TCAGGGAGGCAAGATTCACCGTTGTGGCTTTAATC
Found at i:16169011 original size:44 final size:44
Alignment explanation
Indices: 16168949--16169051 Score: 152
Period size: 44 Copynumber: 2.3 Consensus size: 44
16168939 CCTTTATTTT
* * *
16168949 AATCCGCTCCACTATAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
* * *
16168993 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
16169037 AATCTGCTCCACTGT
1 AATCTGCTCCACTGT
16169052 GGCTTAAATC
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTAGCTTC
Done.