Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 64 of 173
Found at i:18470548 original size:11 final size:11
Alignment explanation
Indices: 18470517--18470585 Score: 52
Period size: 11 Copynumber: 6.1 Consensus size: 11
18470507 AAAAAGAGAA
*
18470517 AATGATGAATG
1 AATGAGGAATG
18470528 -ATGA-GAATG
1 AATGAGGAATG
18470537 AATGAGGAATG
1 AATGAGGAATG
* *
18470548 ATTGAGGGATG
1 AATGAGGAATG
*
18470559 ATTGAGGGATGATG
1 AATGA-GGA--ATG
18470573 AATGAAGGAATG
1 AATG-AGGAATG
18470585 A
1 A
18470586 GAGGGTCTTA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
9 5 0.10
10 8 0.17
11 19 0.40
12 6 0.12
14 9 0.19
15 1 0.02
ACGTcount: A:0.41, C:0.00, G:0.36, T:0.23
Consensus pattern (11 bp):
AATGAGGAATG
Found at i:18485748 original size:28 final size:28
Alignment explanation
Indices: 18485716--18485770 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
18485706 CAACTGCAGT
18485716 TGTGGGCCTTAGCCCAATACAATAACAA
1 TGTGGGCCTTAGCCCAATACAATAACAA
* *
18485744 TGTGGGCCTTAGCCTAATACAGTAACA
1 TGTGGGCCTTAGCCCAATACAATAACA
18485771 GTACAGTGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.33, C:0.24, G:0.20, T:0.24
Consensus pattern (28 bp):
TGTGGGCCTTAGCCCAATACAATAACAA
Found at i:18486154 original size:27 final size:26
Alignment explanation
Indices: 18486124--18486459 Score: 251
Period size: 27 Copynumber: 12.3 Consensus size: 26
18486114 TATAATAGTT
*
18486124 ATTTTACCCTAGGAGGGTATTTTGGTC
1 ATTTTACCCTA-GAGGGTATTTCGGTC
*
18486151 ATTTTACCTTACG-GTGGTATTTCGGTC
1 ATTTTACCCTA-GAG-GGTATTTCGGTC
*
18486178 ATTTTATCCTACGGGGAGGGGGTATTTCGGTC
1 ATTTTACCCTA----GA--GGGTATTTCGGTC
* *
18486210 ATTTTACCCTACAGTGGTATTTCAGTC
1 ATTTTACCCTAGAG-GGTATTTCGGTC
* * *
18486237 ATTTTACACTACGGGGGTATTTTGGTC
1 ATTTTACCCTA-GAGGGTATTTCGGTC
*
18486264 ATTTTACCCTACGAGGGTATTTCAGTC
1 ATTTTACCCTA-GAGGGTATTTCGGTC
* *
18486291 ATTTTACCCTACAAGGGTATTTTGGTC
1 ATTTTACCCTA-GAGGGTATTTCGGTC
* **
18486318 ATTTTACCCTATAGGGGTATTTTAGTC
1 ATTTTACCCTAGA-GGGTATTTCGGTC
* * *
18486345 ATTTTACCTTATAGGGGTATTTCAGTC
1 ATTTTACCCTAGA-GGGTATTTCGGTC
* * *
18486372 ATTTTACCTTATAGAGGTATTTCAGTC
1 ATTTTACCCTAGAG-GGTATTTCGGTC
* * * * *
18486399 ATTTAACCCTATAAGGTATTTTGGTT
1 ATTTTACCCTAGAGGGTATTTCGGTC
* * *
18486425 ATTTTACCTTATAGGGGTATTTTGGTC
1 ATTTTACCCTAGA-GGGTATTTCGGTC
*
18486452 ATTCTACC
1 ATTTTACC
18486460 TATTTTGGGG
Statistics
Matches: 261, Mismatches: 36, Indels: 24
0.81 0.11 0.07
Matches are distributed among these distances:
26 24 0.09
27 211 0.81
28 2 0.01
30 1 0.00
32 22 0.08
33 1 0.00
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.42
Consensus pattern (26 bp):
ATTTTACCCTAGAGGGTATTTCGGTC
Found at i:18486182 original size:54 final size:53
Alignment explanation
Indices: 18486124--18486446 Score: 303
Period size: 54 Copynumber: 5.9 Consensus size: 53
18486114 TATAATAGTT
*
18486124 ATTTTACCCTAGGAGGGTATTTTGGTCATTTTACCTTACGGTGGTATTTCGGTC
1 ATTTTACCCTAGGAGGGTATTTTGGTCATTTTACCTTACGG-GGTATTTCAGTC
* * * *
18486178 ATTTTATCCTACGGGGAGGGGGTATTTCGGTCATTTTACCCTACAGTGGTATTTCAGTC
1 ATTTTACCCTA---GGA--GGGTATTTTGGTCATTTTACCTTAC-GGGGTATTTCAGTC
* *
18486237 ATTTTACACTACGG-GGGTATTTTGGTCATTTTACCCTACGAGGGTATTTCAGTC
1 ATTTTACCCTA-GGAGGGTATTTTGGTCATTTTACCTTACG-GGGTATTTCAGTC
** *
18486291 ATTTTACCCTACAAGGGTATTTTGGTCATTTTACCCTATA-GGGGTATTTTAGTC
1 ATTTTACCCTAGGAGGGTATTTTGGTCATTTTA-CCT-TACGGGGTATTTCAGTC
* * ** * *
18486345 ATTTTACCTTA-TAGGGGTATTTCAGTCATTTTACCTTATAGAGGTATTTCAGTC
1 ATTTTACCCTAGGA-GGGTATTTTGGTCATTTTACCTTA-CGGGGTATTTCAGTC
* * * * *
18486399 ATTTAACCCTA-TAAGGTATTTTGGTTATTTTACCTTATAGGGGTATTT
1 ATTTTACCCTAGGAGGGTATTTTGGTCATTTTACCTTA-CGGGGTATTT
18486447 TGGTCATTCT
Statistics
Matches: 228, Mismatches: 28, Indels: 27
0.81 0.10 0.10
Matches are distributed among these distances:
52 2 0.01
53 35 0.15
54 137 0.60
55 3 0.01
56 2 0.01
57 5 0.02
59 43 0.19
60 1 0.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (53 bp):
ATTTTACCCTAGGAGGGTATTTTGGTCATTTTACCTTACGGGGTATTTCAGTC
Found at i:18486320 original size:81 final size:80
Alignment explanation
Indices: 18486124--18486446 Score: 303
Period size: 81 Copynumber: 3.9 Consensus size: 80
18486114 TATAATAGTT
* * * *
18486124 ATTTTACCCTAGGAGGGTATTTTGGTCATTTTACCTTACGGTGGTATTTCGGTCATTTTATCCTA
1 ATTTTACCCTA-CAGGGTATTTTGGTCATTTTACC-TACGGGGGTATTTTGGTCATTTTACCCTA
*
18486189 CGGGGAGGGGGTATTTCGGTC
64 C---GA-GGGGTATTTCAGTC
**
18486210 ATTTTACCCTACAGTGGTATTTCAGTCATTTTACACTACGGGGGTATTTTGGTCATTTTACCCTA
1 ATTTTACCCTACAG-GGTATTTTGGTCATTTTAC-CTACGGGGGTATTTTGGTCATTTTACCCTA
18486275 CGA-GGGTATTTCAGTC
64 CGAGGGGTATTTCAGTC
** * *
18486291 ATTTTACCCTACAAGGGTATTTTGGTCATTTTACCCTATAGGGGTATTTTAGTCATTTTACCTTA
1 ATTTTACCCTAC-AGGGTATTTTGGTCATTTTA-CCTACGGGGGTATTTTGGTCATTTTACCCTA
*
18486356 -TAGGGGTATTTCAGTC
64 CGAGGGGTATTTCAGTC
* * ** * *** * *
18486372 ATTTTACCTTATAGAGGTATTTCAGTCATTTAACCCTA-TAAGGTATTTTGGTTATTTTACCTTA
1 ATTTTACCCTACAG-GGTATTTTGGTCATTTTA-CCTACGGGGGTATTTTGGTCATTTTACCCTA
*
18486436 -TAGGGGTATTT
64 CGAGGGGTATTT
18486447 TGGTCATTCT
Statistics
Matches: 207, Mismatches: 24, Indels: 18
0.83 0.10 0.07
Matches are distributed among these distances:
80 35 0.17
81 109 0.53
82 3 0.01
83 2 0.01
85 2 0.01
86 55 0.27
87 1 0.00
ACGTcount: A:0.21, C:0.16, G:0.21, T:0.42
Consensus pattern (80 bp):
ATTTTACCCTACAGGGTATTTTGGTCATTTTACCTACGGGGGTATTTTGGTCATTTTACCCTACG
AGGGGTATTTCAGTC
Found at i:18486460 original size:27 final size:27
Alignment explanation
Indices: 18486196--18486446 Score: 272
Period size: 27 Copynumber: 9.3 Consensus size: 27
18486186 CTACGGGGAG
* *
18486196 GGGGTATTTCGGTCATTTTACCCTACA
1 GGGGTATTTCAGTCATTTTACCCTATA
* * **
18486223 GTGGTATTTCAGTCATTTTACACTACG
1 GGGGTATTTCAGTCATTTTACCCTATA
** *
18486250 GGGGTATTTTGGTCATTTTACCCTA-C
1 GGGGTATTTCAGTCATTTTACCCTATA
*
18486276 GAGGGTATTTCAGTCATTTTACCCTACA
1 G-GGGTATTTCAGTCATTTTACCCTATA
* **
18486304 AGGGTATTTTGGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATA
* *
18486331 GGGGTATTTTAGTCATTTTACCTTATA
1 GGGGTATTTCAGTCATTTTACCCTATA
*
18486358 GGGGTATTTCAGTCATTTTACCTTATA
1 GGGGTATTTCAGTCATTTTACCCTATA
* *
18486385 GAGGTATTTCAGTCATTTAACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATA
* ** * *
18486412 -AGGTATTTTGGTTATTTTACCTTATA
1 GGGGTATTTCAGTCATTTTACCCTATA
18486438 GGGGTATTT
1 GGGGTATTT
18486447 TGGTCATTCT
Statistics
Matches: 192, Mismatches: 29, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
26 22 0.11
27 170 0.89
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.43
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATA
Found at i:18489603 original size:27 final size:27
Alignment explanation
Indices: 18489565--18490307 Score: 686
Period size: 27 Copynumber: 27.2 Consensus size: 27
18489555 AATCAGCGTC
*
18489565 TAAAATGACTGAAATACCCTCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
* * *
18489592 TAAAATGACTGAAATACCTTCGATGGC
1 TAAAATTACTGAAATACCCTCGATGGG
*
18489619 TAAAAATACTGAAATACCCTCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
*
18489646 TAAAATGACTGAAATACCCTCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
*
18489673 TAAAATTA-TCGAAATACCTTCGATGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
* *
18489700 TAAAATTACCGAAATACCCCCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
* *
18489727 TAAAATTACCGAAATACCATCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
*
18489754 TAAAATTAC-GAAAATACCCTTGATGGG
1 TAAAATTACTG-AAATACCCTCGATGGG
18489781 TAAAATTA-TCGAAATACCCTCGATGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
*
18489808 TTAAATTACTGAAATACCCTCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
** * *
18489835 TAAAATTACCAAAATACCC-CTAATGGT
1 TAAAATTACTGAAATACCCTC-GATGGG
* * * *
18489862 TAAAATAACTAAAATACCCTCAACGGG
1 TAAAATTACTGAAATACCCTCGATGGG
* * **
18489889 TGAAATGACCAAAATACCCTCGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
* * *
18489916 TAAAATAACTGAAATAGCCTCGTTGGGTAAAG
1 TAAAATTACTGAAATACCCTCGAT-GG----G
**
18489948 TAACTAAAATTA-TCGAAATACCCTCGATGTT
1 ----TAAAATTACT-GAAATACCCTCGATGGG
*
18489979 TAAAATGA-TCGAAATACCCTCGATGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
* * *
18490006 TAAAATGATTGAAATACCCTTGATGGG
1 TAAAATTACTGAAATACCCTCGATGGG
18490033 TAAAATTA-TCGAAATACCCTCGATGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
* * * *
18490060 TAAAATTA-TCAAAATATCGTCGAAGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
*
18490087 TAAAATTA-TCAAAATACCCTCGATGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
*
18490114 TAAAATTACTAAAATACCCGT-GATGGG
1 TAAAATTACTGAAATACCC-TCGATGGG
* * *
18490141 TAAAATTATTGAAAT-CCCCCGAAGGG
1 TAAAATTACTGAAATACCCTCGATGGG
* *
18490167 TAAAATTAAC-GAAATACCCTCAATGTG
1 TAAAATT-ACTGAAATACCCTCGATGGG
* *
18490194 TAAAATTA-TAGAAATACCTTTGATGGG
1 TAAAATTACT-GAAATACCCTCGATGGG
* * *
18490221 TAAAATGACTGAAATACCCCCGAAGGG
1 TAAAATTACTGAAATACCCTCGATGGG
** * *
18490248 TAAAATGGCCGAAATACCCTCGATAGG
1 TAAAATTACTGAAATACCCTCGATGGG
* *
18490275 TAAAATTACCGAAATACCC-CTATAGGG
1 TAAAATTACTGAAATACCCTCGAT-GGG
18490302 TAAAAT
1 TAAAAT
18490308 GACCGTTATA
Statistics
Matches: 603, Mismatches: 84, Indels: 58
0.81 0.11 0.08
Matches are distributed among these distances:
26 28 0.05
27 544 0.90
28 9 0.01
32 1 0.00
35 2 0.00
36 19 0.03
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.24
Consensus pattern (27 bp):
TAAAATTACTGAAATACCCTCGATGGG
Found at i:18490541 original size:26 final size:26
Alignment explanation
Indices: 18490503--18490584 Score: 83
Period size: 26 Copynumber: 3.2 Consensus size: 26
18490493 TTGCTACAAA
* * *
18490503 TACTGTTACTGACAGCTTTGTTGCGT
1 TACTGATAATGACAGCTTTGCTGCGT
* *
18490529 TACTGATAATGACAGCTCTGCTGCCT
1 TACTGATAATGACAGCTTTGCTGCGT
* * * *
18490555 TACTGTTAGTGGCAACTTTGCTGCGT
1 TACTGATAATGACAGCTTTGCTGCGT
18490581 TACT
1 TACT
18490585 ATTATTGCCA
Statistics
Matches: 45, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
TACTGATAATGACAGCTTTGCTGCGT
Found at i:18490599 original size:26 final size:26
Alignment explanation
Indices: 18490503--18490605 Score: 82
Period size: 26 Copynumber: 4.0 Consensus size: 26
18490493 TTGCTACAAA
* * *
18490503 TACTGTTACTGACAGCTTTGTTGCGT
1 TACTATTAATGACAGCTTTGCTGCGT
* *
18490529 TACTGA-TAATGACAGCTCTGCTGCCT
1 TACT-ATTAATGACAGCTTTGCTGCGT
* * * *
18490555 TACTGTTAGTGGCAACTTTGCTGCGT
1 TACTATTAATGACAGCTTTGCTGCGT
* * *
18490581 TACTATTATTGCCAGCTTTGTTGCG
1 TACTATTAATGACAGCTTTGCTGCG
18490606 ATATTGGTGT
Statistics
Matches: 59, Mismatches: 16, Indels: 4
0.75 0.20 0.05
Matches are distributed among these distances:
26 59 1.00
ACGTcount: A:0.17, C:0.21, G:0.22, T:0.39
Consensus pattern (26 bp):
TACTATTAATGACAGCTTTGCTGCGT
Found at i:18490746 original size:30 final size:30
Alignment explanation
Indices: 18490710--18490788 Score: 131
Period size: 30 Copynumber: 2.6 Consensus size: 30
18490700 ACTGCATTTG
18490710 CACTGTTACTGTATTGGGCTAAGGCCCACA
1 CACTGTTACTGTATTGGGCTAAGGCCCACA
* *
18490740 CTCTGTTACTGTATTGGGCTATGGCCCACA
1 CACTGTTACTGTATTGGGCTAAGGCCCACA
*
18490770 CACTGTTACTGTATAGGGC
1 CACTGTTACTGTATTGGGC
18490789 CCAGGCCTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 45 1.00
ACGTcount: A:0.20, C:0.25, G:0.24, T:0.30
Consensus pattern (30 bp):
CACTGTTACTGTATTGGGCTAAGGCCCACA
Found at i:18498842 original size:20 final size:20
Alignment explanation
Indices: 18498807--18498855 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
18498797 ATCATGGTCT
* *
18498807 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTAAC
18498826 TCT-CTTACTTGTTTACTAAC
1 T-TGCTTACTTGTTTACTAAC
18498846 TTGCTTACTT
1 TTGCTTACTT
18498856 AAATACCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.14, C:0.24, G:0.06, T:0.55
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTAAC
Found at i:18506554 original size:20 final size:20
Alignment explanation
Indices: 18506529--18506567 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
18506519 CTTTGTTTCT
18506529 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
18506549 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
18506568 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:18506897 original size:50 final size:50
Alignment explanation
Indices: 18506772--18507011 Score: 171
Period size: 50 Copynumber: 4.7 Consensus size: 50
18506762 TAACAACATA
* * * * * * * * *
18506772 CCAAAGCCATGTCCCAGACATGGTCCTACATGGGACATTTCCT-TTACTG
1 CCAATGCCATATCCTAGACATGGTCTTACATGGGACCTCTCATATCAGTG
* * **
18506821 CCAAT-CACATATCCTAGATATAGTCTTACATGGGAGTTCTCATATCAGTG
1 CCAATGC-CATATCCTAGACATGGTCTTACATGGGACCTCTCATATCAGTG
* ** *
18506871 CGC-ATGCCATATCCCAGACATGGTCTTACGGGGGACCTCTCATCTCAGTG
1 C-CAATGCCATATCCTAGACATGGTCTTACATGGGACCTCTCATATCAGTG
* ** * *
18506921 CCAATGCCATGTCCTAGACATGGTCTTACATCAGACCTCTCATAACCTTAATAATG
1 CCAATGCCATATCCTAGACATGGTCTTACATGGGACCTCTCAT-A---T--CAGTG
* *
18506977 CCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 CCAATGCCATATCCTAGACATGGTCTTACATGGGA
18507012 TCTCATTCCC
Statistics
Matches: 148, Mismatches: 32, Indels: 15
0.76 0.16 0.08
Matches are distributed among these distances:
48 1 0.01
49 32 0.22
50 77 0.52
51 2 0.01
54 1 0.01
56 35 0.24
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (50 bp):
CCAATGCCATATCCTAGACATGGTCTTACATGGGACCTCTCATATCAGTG
Found at i:18513190 original size:40 final size:40
Alignment explanation
Indices: 18513135--18513397 Score: 427
Period size: 40 Copynumber: 6.6 Consensus size: 40
18513125 ATTTGAATAC
18513135 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
18513175 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
18513215 ATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
18513255 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
18513295 ATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
18513335 ATCCGGGCTAAGACCCGAAGGCATTCGTGCTAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
18513375 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
18513398 ATTGAGCTTG
Statistics
Matches: 206, Mismatches: 17, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 206 1.00
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:18513420 original size:80 final size:80
Alignment explanation
Indices: 18513135--18513401 Score: 480
Period size: 80 Copynumber: 3.3 Consensus size: 80
18513125 ATTTGAATAC
* *
18513135 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
18513200 TGTGCGAGTTGATAT
66 TGTGCGAGTTGATAT
18513215 ATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
18513280 TGTGCGAGTTGATAT
66 TGTGCGAGTTGATAT
18513295 ATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
1 ATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
* * *
18513360 CGTGCTAGTTGCTAT
66 TGTGCGAGTTGATAT
*
18513375 ACCCGGGTTAAGACCCGAAGGCAATTG
1 ATCCGGGTTAAGACCCGAAGGCAATTG
18513402 AGCTTGTGGT
Statistics
Matches: 181, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
80 181 1.00
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (80 bp):
ATCCGGGTTAAGACCCGAAGGCAATTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGTTGATAT
Found at i:18521639 original size:40 final size:40
Alignment explanation
Indices: 18521584--18521766 Score: 303
Period size: 40 Copynumber: 4.6 Consensus size: 40
18521574 ATTTGAATAC
18521584 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
18521624 ATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
*
18521664 ATCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGATAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* * *
18521704 ATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTAT
1 ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
* *
18521744 ACCCGGGTTAAGACCCGAAGGCA
1 ATCCGGGCTAAGACCCGAAGGCA
18521767 ATTGAGCTTG
Statistics
Matches: 134, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 134 1.00
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.22
Consensus pattern (40 bp):
ATCCGGGCTAAGACCCGAAGGCATTTGTGCAAGTTGATAT
Found at i:18532397 original size:27 final size:27
Alignment explanation
Indices: 18532356--18532848 Score: 478
Period size: 27 Copynumber: 18.3 Consensus size: 27
18532346 GTGAGGTCAA
18532356 TAAAATGACCGAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
** *
18532383 TAAAATGACAAAAATATCCCC-GTAGGG
1 TAAAATGACCGAAATA-CCCCTATAGGG
* *
18532410 TAAAGTGACCGAAGTACCCCTATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
**
18532437 TAAAATGA-CGAAAATACCCCCGTAGGG
1 TAAAATGACCG-AAATACCCCTATAGGG
** **
18532464 TAAAATGATTGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * * * *
18532491 TAAAATTAACAAAATAGCCCTGTAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
** *
18532518 TAAAATGACAAAAATACCCTTATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * *
18532545 TAAAATGATCGAAATACCCCCATAGAG
1 TAAAATGACCGAAATACCCCTATAGGG
** *
18532572 TAAAATGATTGAAATACCCCTAAAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * *
18532599 TAAAATGACCAAAATACCCTTATAAGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * *
18532626 TAAAATGATCGAAATA-ACCTCGTAGGG
1 TAAAATGACCGAAATACCCCT-ATAGGG
* *
18532653 TAAAATGACCGAAATACCCCTGTAAGG
1 TAAAATGACCGAAATACCCCTATAGGG
* *
18532680 TAAAATGACCAAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* * *
18532707 TAAAATGATCGAAATAACCC-AGTAAGG
1 TAAAATGACCGAAATACCCCTA-TAGGG
18532734 TAAAATGACCGAAATACCCC-ATAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
* ** *
18532760 TAAAATGACTGAAATACCCCCGTAAGG
1 TAAAATGACCGAAATACCCCTATAGGG
* *
18532787 TAAAATGACTGAAATA-CCCTCGTAGGG
1 TAAAATGACCGAAATACCCCT-ATAGGG
* *
18532814 TAAAAGGACCGAAATACCCC-ACAGGG
1 TAAAATGACCGAAATACCCCTATAGGG
18532840 TAAAATGAC
1 TAAAATGAC
18532849 TGTTATACCC
Statistics
Matches: 385, Mismatches: 71, Indels: 21
0.81 0.15 0.04
Matches are distributed among these distances:
26 47 0.12
27 327 0.85
28 11 0.03
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCTATAGGG
Found at i:18532491 original size:81 final size:81
Alignment explanation
Indices: 18532356--18532848 Score: 575
Period size: 81 Copynumber: 6.1 Consensus size: 81
18532346 GTGAGGTCAA
* * * *
18532356 TAAAATGACCG-AAATACCCCTATAGGGTAAAATGA-CAAAAATATCCCCGTAGGGTAAAGTGAC
1 TAAAATGA-CGAAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCCGTAGGGTAAAATGAC
*
18532419 CGAAGTACCCCTATAGGG
64 CGAAATACCCCTATAGGG
* * * * *
18532437 TAAAATGACGAAAATACCCCCGTAGGGTAAAATGATTGAAATACCCCCGTAGGGTAAAATTAACA
1 TAAAATGACGAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCGTAGGGTAAAATGACCG
* *
18532502 AAATAGCCCTGTAGGG
66 AAATACCCCTATAGGG
* ** * * **
18532518 TAAAATGACAAAAATACCCTTATAGGGTAAAATGATCGAAATACCCCCATAGAGTAAAATGATTG
1 TAAAATGACGAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCGTAGGGTAAAATGACCG
*
18532583 AAATACCCCTAAAGGG
66 AAATACCCCTATAGGG
* ** * * *
18532599 TAAAATGACCAAAATACCCTTATAAGGTAAAATGATCGAAATAACCTCGTAGGGTAAAATGACCG
1 TAAAATGACGAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCGTAGGGTAAAATGACCG
* *
18532664 AAATACCCCTGTAAGG
66 AAATACCCCTATAGGG
* * * *
18532680 TAAAATGACCAAAATACCCCCATAGGGTAAAATGATCGAAATAACCCAGTAAGGTAAAATGACCG
1 TAAAATGACGAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCGTAGGGTAAAATGACCG
18532745 AAATACCCC-ATAGGG
66 AAATACCCCTATAGGG
* * * *
18532760 TAAAATGACTG-AAATACCCCCGTAAGGTAAAATGA-CTGAAATACCCTCGTAGGGTAAAAGGAC
1 TAAAATGAC-GAAAATACCCCCATAGGGTAAAATGATC-GAAATACCCCCGTAGGGTAAAATGAC
*
18532823 CGAAATACCCC-ACAGGG
64 CGAAATACCCCTATAGGG
18532840 TAAAATGAC
1 TAAAATGAC
18532849 TGTTATACCC
Statistics
Matches: 354, Mismatches: 54, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
79 1 0.00
80 83 0.23
81 270 0.76
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (81 bp):
TAAAATGACGAAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCGTAGGGTAAAATGACCG
AAATACCCCTATAGGG
Found at i:18534402 original size:13 final size:13
Alignment explanation
Indices: 18534384--18534413 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
18534374 TTGACCCGAT
18534384 TTGTGTGATTAAA
1 TTGTGTGATTAAA
18534397 TTGTGTGATTAAA
1 TTGTGTGATTAAA
18534410 TTGT
1 TTGT
18534414 TTCAAACCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (13 bp):
TTGTGTGATTAAA
Found at i:18539162 original size:50 final size:50
Alignment explanation
Indices: 18539108--18539284 Score: 185
Period size: 50 Copynumber: 3.4 Consensus size: 50
18539098 TATCCAAGAT
* ** *
18539108 ATGGTCTTACATGAGAGTTCTCATATAGGTGCCCATGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATGTCCCAAAC
* * * *
18539158 ATGGTGTTACGA-GGGACCTCTCATTTTGGTGCCAACGCCATGTCCCAAAC
1 ATGGTCTTAC-ATGGGACCTCTCATATAGGTGCCAATGCCATGTCCCAAAC
* *
18539208 ATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCAT-A--T--A-GGTGCCAATGCCATGTCCCAAAC
*
18539264 ATGGTCTTACATGGGATCTCT
1 ATGGTCTTACATGGGACCTCT
18539285 TTACCCAAAT
Statistics
Matches: 104, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
49 1 0.01
50 61 0.59
51 1 0.01
53 1 0.01
56 40 0.38
ACGTcount: A:0.24, C:0.27, G:0.21, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATATAGGTGCCAATGCCATGTCCCAAAC
Found at i:18539624 original size:17 final size:17
Alignment explanation
Indices: 18539602--18539636 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
18539592 TCACATTCAT
18539602 CAAAATTACAATGTTGA
1 CAAAATTACAATGTTGA
*
18539619 CAAAATTACAATTTTGA
1 CAAAATTACAATGTTGA
18539636 C
1 C
18539637 CTTAAACTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.31
Consensus pattern (17 bp):
CAAAATTACAATGTTGA
Found at i:18545895 original size:50 final size:50
Alignment explanation
Indices: 18545837--18545970 Score: 160
Period size: 50 Copynumber: 2.7 Consensus size: 50
18545827 ACCAATGCCA
**
18545837 TGTCCCAGACACGGTCTTATGGGGGACCTCTCATCTCGATGCCAACGTCG
1 TGTCCCAGACACGGTCTTACAGGGGACCTCTCATCTCGATGCCAACGTCG
* * * * *
18545887 TGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCA
1 TGTCCCAGACACGGTCTTACAGGGGACCTCTCATCTCGATGCCAACGTCG
* * * * *
18545937 TGTCACAAACATGGTCTTACACGAGACCTCTCAT
1 TGTCCCAGACACGGTCTTACAGGGGACCTCTCAT
18545971 AATCTCAATG
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 73 1.00
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.25
Consensus pattern (50 bp):
TGTCCCAGACACGGTCTTACAGGGGACCTCTCATCTCGATGCCAACGTCG
Found at i:18561892 original size:27 final size:27
Alignment explanation
Indices: 18561858--18562401 Score: 319
Period size: 27 Copynumber: 20.3 Consensus size: 27
18561848 CCAATATTTC
*
18561858 TAAAATGACTGTAATACCCCTATAGGA
1 TAAAATGACTGTAATACCCCTATAGGG
* **
18561885 TAGAATGACCATAATACCCCTATAGGG
1 TAAAATGACTGTAATACCCCTATAGGG
*
18561912 TAAAATGA-TCGTAATACCCCTGTAGGG
1 TAAAATGACT-GTAATACCCCTATAGGG
** * * *
18561939 TAAAATGACCATAACACCCGTATAAGG
1 TAAAATGACTGTAATACCCCTATAGGG
*
18561966 TAAAATGACTGTAATACCCCTGTAGGG
1 TAAAATGACTGTAATACCCCTATAGGG
***
18561993 TAAAATGACCAAAATACCCCTGAT-GGG
1 TAAAATGACTGTAATACCCCT-ATAGGG
*** *
18562020 TAAAATGACCAAAATACCCTCAAT-GGG
1 TAAAATGACTGTAATACCC-CTATAGGG
* *
18562047 TAAAATGACTGAAATACCCTTGAT-GGG
1 TAAAATGACTGTAATACCCCT-ATAGGG
* *
18562074 TAAAATGACTGAAATACCCTCGAT-GGG
1 TAAAATGACTGTAATACCC-CTATAGGG
* ** *
18562101 TCAAATGA-TCAAAATACCCTCGAT-GGG
1 TAAAATGACT-GTAATACCC-CTATAGGG
* *** * * *
18562128 TCAAATGACCAAAATTCCATCGAT-GGG
1 TAAAATGACTGTAATACC-CCTATAGGG
*** * *
18562155 TAAAATGACCAAAATACCCTCGAT-GGA
1 TAAAATGACTGTAATACCC-CTATAGGG
* * *
18562182 TAAAATGACTGAAATGCCCCCATAGGG
1 TAAAATGACTGTAATACCCCTATAGGG
* ***
18562209 TAAAATAACCAAAATACACCC-ATAGGG
1 TAAAATGACTGTAATAC-CCCTATAGGG
* *
18562236 TAGAAT-ACTGAAATACCCC-ATAGGG
1 TAAAATGACTGTAATACCCCTATAGGG
* *
18562261 TAAAATTA-TCGTAATA-CCCTTTAGGG
1 TAAAATGACT-GTAATACCCCTATAGGG
* * *
18562287 TAAAATGACCGTAATACCCCTGTAGGA
1 TAAAATGACTGTAATACCCCTATAGGG
* * *
18562314 TAAAATGACCGTAATACCCTTGTAGGG
1 TAAAATGACTGTAATACCCCTATAGGG
* * *
18562341 TAAAATGACCGTAAT-CCCTCTGTAGAG
1 TAAAATGACTGTAATACCC-CTATAGGG
* *
18562368 TAAAAT-AATCGTAACACCCCTATAGGG
1 TAAAATGACT-GTAATACCCCTATAGGG
18562395 TAAAATG
1 TAAAATG
18562402 CCAATCATAG
Statistics
Matches: 428, Mismatches: 68, Indels: 41
0.80 0.13 0.08
Matches are distributed among these distances:
25 18 0.04
26 40 0.09
27 362 0.85
28 8 0.02
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (27 bp):
TAAAATGACTGTAATACCCCTATAGGG
Found at i:18561917 original size:54 final size:54
Alignment explanation
Indices: 18561858--18562401 Score: 405
Period size: 54 Copynumber: 10.1 Consensus size: 54
18561848 CCAATATTTC
* * *
18561858 TAAAATGACTGTAATACCCCTATAGGATAGAATGACCATAATACCCCTATAGGG
1 TAAAATGACTGAAATACCCCTATAGGGTAAAATGACCATAATACCCCTATAGGG
* * * * *
18561912 TAAAATGA-TCGTAATACCCCTGTAGGGTAAAATGACCATAACACCCGTATAAGG
1 TAAAATGACT-GAAATACCCCTATAGGGTAAAATGACCATAATACCCCTATAGGG
* * *
18561966 TAAAATGACTGTAATACCCCTGTAGGGTAAAATGACCAAAATACCCCTGAT-GGG
1 TAAAATGACTGAAATACCCCTATAGGGTAAAATGACCATAATACCCCT-ATAGGG
** * * *
18562020 TAAAATGACCAAAATACCCTCAAT-GGGTAAAATGACTGA-AATACCCTTGAT-GGG
1 TAAAATGACTGAAATACCC-CTATAGGGTAAAATGAC-CATAATACCCCT-ATAGGG
* * * * *
18562074 TAAAATGACTGAAATACCCTCGAT-GGGTCAAATGATCAAAATACCCTCGAT-GGG
1 TAAAATGACTGAAATACCC-CTATAGGGTAAAATGACCATAATACCC-CTATAGGG
* ** * * * * * *
18562128 TCAAATGACCAAAATTCCATCGAT-GGGTAAAATGACCAAAATACCCTCGAT-GGA
1 TAAAATGACTGAAATACC-CCTATAGGGTAAAATGACCATAATACCC-CTATAGGG
* * * *
18562182 TAAAATGACTGAAATGCCCCCATAGGGTAAAATAACCAAAATACACCC-ATAGGG
1 TAAAATGACTGAAATACCCCTATAGGGTAAAATGACCATAATAC-CCCTATAGGG
* * * * *
18562236 TAGAAT-ACTGAAATACCCC-ATAGGGTAAAATTATCGTAATA-CCCTTTAGGG
1 TAAAATGACTGAAATACCCCTATAGGGTAAAATGACCATAATACCCCTATAGGG
* * * * * * *
18562287 TAAAATGACCGTAATACCCCTGTAGGATAAAATGACCGTAATACCCTTGTAGGG
1 TAAAATGACTGAAATACCCCTATAGGGTAAAATGACCATAATACCCCTATAGGG
* * * * * * * *
18562341 TAAAATGACCGTAAT-CCCTCTGTAGAGTAAAATAATCGTAACACCCCTATAGGG
1 TAAAATGACTGAAATACCC-CTATAGGGTAAAATGACCATAATACCCCTATAGGG
18562395 TAAAATG
1 TAAAATG
18562402 CCAATCATAG
Statistics
Matches: 410, Mismatches: 64, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
50 3 0.01
51 10 0.02
52 29 0.07
53 40 0.10
54 320 0.78
55 8 0.02
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.23
Consensus pattern (54 bp):
TAAAATGACTGAAATACCCCTATAGGGTAAAATGACCATAATACCCCTATAGGG
Found at i:18562446 original size:32 final size:32
Alignment explanation
Indices: 18562400--18562568 Score: 132
Period size: 32 Copynumber: 5.3 Consensus size: 32
18562390 TAGGGTAAAA
* *
18562400 TGCCAATCATAGTACCGTTACTGATGGCTTTG
1 TGCCGATCATAGTACTGTTACTGATGGCTTTG
*
18562432 TGCCGATCATAGTACTATTACTGATGGCTTTG
1 TGCCGATCATAGTACTGTTACTGATGGCTTTG
* *
18562464 TGCTGATCATATTACTGTTA-TCGATGG-TTGTG
1 TGCCGATCATAGTACTGTTACT-GATGGCTT-TG
* * * ** *
18562496 TGCTGGA-CAT-TTCACTATTACAAATGGCTGTG
1 TGC-CGATCATAGT-ACTGTTACTGATGGCTTTG
* *
18562528 TGCCGGTCAT-GTCACTGCTACTGATGGCTTTG
1 TGCCGATCATAGT-ACTGTTACTGATGGCTTTG
*
18562560 TGCCAATCA
1 TGCCGATCA
18562569 CATTGTTGTA
Statistics
Matches: 109, Mismatches: 21, Indels: 14
0.76 0.15 0.10
Matches are distributed among these distances:
31 6 0.06
32 100 0.92
33 3 0.03
ACGTcount: A:0.21, C:0.20, G:0.23, T:0.36
Consensus pattern (32 bp):
TGCCGATCATAGTACTGTTACTGATGGCTTTG
Found at i:18562610 original size:22 final size:22
Alignment explanation
Indices: 18562585--18562626 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
18562575 TGTACTTTTG
* *
18562585 GCTTGTAGCCATTCTGTTTATA
1 GCTTATAGCCATCCTGTTTATA
*
18562607 GCTTATAGCTATCCTGTTTA
1 GCTTATAGCCATCCTGTTTA
18562627 CGGCTCTTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.45
Consensus pattern (22 bp):
GCTTATAGCCATCCTGTTTATA
Found at i:18567652 original size:40 final size:40
Alignment explanation
Indices: 18567581--18567759 Score: 153
Period size: 40 Copynumber: 4.5 Consensus size: 40
18567571 AATTATTGAA
* * *
18567581 TGAATGCACATGCATGCCCCTGATTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTGATTGCACTTCGGTACCCC
* ** *
18567621 TGAATGCACATATGTGCTTCT-ACTTGCACTTCGGTACCCT
1 TGAATGCACATACGTGCCCCTGA-TTGCACTTCGGTACCCC
* * * *
18567661 TAAATGCAGATACGTGCCCCTGATTGTACTTCGATACCCC
1 TGAATGCACATACGTGCCCCTGATTGCACTTCGGTACCCC
* * * * * * * *
18567701 TGAATACACATAAGTACCCTTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACGTGCCCCTGATTGCACTTCGGTACCCC
* *
18567741 TGAATACACTTACGTGCCC
1 TGAATGCACATACGTGCCC
18567760 TTGTTTATAC
Statistics
Matches: 109, Mismatches: 28, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
39 1 0.01
40 107 0.98
41 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.31
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTGATTGCACTTCGGTACCCC
Found at i:18567737 original size:80 final size:79
Alignment explanation
Indices: 18567595--18567759 Score: 197
Period size: 80 Copynumber: 2.1 Consensus size: 79
18567585 TGCACATGCA
* * * *
18567595 TGCCCCTGATTGTACTTCGGTACCCCTGAATGCACATATGTGCTTCTACTTGCACTTCGGTACCC
1 TGCCCCTGATTGTACTTCGATACCCCTGAATACACATAAGTCCTTCTA-TTGCACTTCGGTACCC
* *
18567660 TTAAATGCAGATACG
65 TTAAATACACATACG
* * *
18567675 TGCCCCTGATTGTACTTCGATACCCCTGAATACACATAAGTACCCTTGT-TTGTACTTTGGTACC
1 TGCCCCTGATTGTACTTCGATACCCCTGAATACACATAAGT--CCTTCTATTGCACTTCGGTACC
* *
18567739 CTTGAATACACTTACG
64 CTTAAATACACATACG
18567755 TGCCC
1 TGCCC
18567760 TTGTTTATAC
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
80 68 0.94
82 4 0.06
ACGTcount: A:0.22, C:0.29, G:0.17, T:0.32
Consensus pattern (79 bp):
TGCCCCTGATTGTACTTCGATACCCCTGAATACACATAAGTCCTTCTATTGCACTTCGGTACCCT
TAAATACACATACG
Found at i:18572228 original size:50 final size:50
Alignment explanation
Indices: 18572130--18572229 Score: 119
Period size: 50 Copynumber: 2.0 Consensus size: 50
18572120 TATGGAGGAA
* * * *
18572130 GTATCTAGTAGTAAATCTACAAATTTCTAGTGGCACGTCCACATTATTCT
1 GTATCTAGTAGTAAATCTACAAATATCTAGTGGCACGACCAAACTATTCT
* * ***
18572180 GTATCTAGTAGTAAATCTCCAAATATCTGGTGTTTCGACCAAACTATTCT
1 GTATCTAGTAGTAAATCTACAAATATCTAGTGGCACGACCAAACTATTCT
18572230 ATTTTTGGCA
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 41 1.00
ACGTcount: A:0.30, C:0.20, G:0.14, T:0.36
Consensus pattern (50 bp):
GTATCTAGTAGTAAATCTACAAATATCTAGTGGCACGACCAAACTATTCT
Found at i:18589862 original size:40 final size:40
Alignment explanation
Indices: 18589818--18589936 Score: 139
Period size: 40 Copynumber: 3.0 Consensus size: 40
18589808 TTGTTGAATA
* * *
18589818 TTTGCACATACGTGCCCCTAATTGTATTTCGGTACCCCTG
1 TTTGCACATACGTGCCCCTGATTGTATTTCGATACCCCTC
* * * * *
18589858 TTTGCTCATATGTGCCCGTGTTTGTACTTCGATACCCCTC
1 TTTGCACATACGTGCCCCTGATTGTATTTCGATACCCCTC
* * *
18589898 TTTGCACATACATGCCCCTGATTGTATTTCAATATCCCT
1 TTTGCACATACGTGCCCCTGATTGTATTTCGATACCCCT
18589937 GAACTCATTT
Statistics
Matches: 63, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
40 63 1.00
ACGTcount: A:0.18, C:0.29, G:0.15, T:0.38
Consensus pattern (40 bp):
TTTGCACATACGTGCCCCTGATTGTATTTCGATACCCCTC
Found at i:18600245 original size:41 final size:41
Alignment explanation
Indices: 18600199--18600402 Score: 201
Period size: 41 Copynumber: 5.0 Consensus size: 41
18600189 AATTATAGTG
* *
18600199 CTAAATTGCACATACGTGCCCCTATTTGTACTTCGGTATCC
1 CTAAATTGCACATACATGCCCCTATTTGTACTTCGGTACCC
* * * ** * *
18600240 CTAAATTGAACATACGTGCTCCTATTTACACATCAGTACCC
1 CTAAATTGCACATACATGCCCCTATTTGTACTTCGGTACCC
* ** * *
18600281 CTAAATTGTACATACATAACCCTATTTGTACTACGGTGCCC
1 CTAAATTGCACATACATGCCCCTATTTGTACTTCGGTACCC
* * * ** * *
18600322 CTGAATTGCACATATATGCCCTTGCTTGTACTACGATACCC
1 CTAAATTGCACATACATGCCCCTATTTGTACTTCGGTACCC
* *
18600363 CTGAATTGCACATACATGCCCCTATTTGTACTTCAGTACC
1 CTAAATTGCACATACATGCCCCTATTTGTACTTCGGTACC
18600403 TCTGGATGTA
Statistics
Matches: 128, Mismatches: 35, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 128 1.00
ACGTcount: A:0.26, C:0.29, G:0.13, T:0.32
Consensus pattern (41 bp):
CTAAATTGCACATACATGCCCCTATTTGTACTTCGGTACCC
Found at i:18600341 original size:21 final size:21
Alignment explanation
Indices: 18600317--18600385 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
18600307 TGTACTACGG
*
18600317 TGCCCCTGAATTGCACATATA
1 TGCCCCTGAATTGCACATACA
* * *
18600338 TGCCCTTG-CTTGTAC-TACGA
1 TGCCCCTGAATTGCACATAC-A
*
18600358 TACCCCTGAATTGCACATACA
1 TGCCCCTGAATTGCACATACA
18600379 TGCCCCT
1 TGCCCCT
18600386 ATTTGTACTT
Statistics
Matches: 36, Mismatches: 9, Indels: 6
0.71 0.18 0.12
Matches are distributed among these distances:
19 2 0.06
20 12 0.33
21 19 0.53
22 3 0.08
ACGTcount: A:0.23, C:0.33, G:0.14, T:0.29
Consensus pattern (21 bp):
TGCCCCTGAATTGCACATACA
Found at i:18606369 original size:5 final size:5
Alignment explanation
Indices: 18606330--18606367 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
18606320 CTCTTCTCTT
*
18606330 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTC TTTT- TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
18606368 TTCACAAGAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
4 4 0.12
5 28 0.88
ACGTcount: A:0.00, C:0.03, G:0.13, T:0.84
Consensus pattern (5 bp):
TTTTG
Found at i:18609212 original size:16 final size:15
Alignment explanation
Indices: 18609191--18609224 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
18609181 CAAATTGATA
*
18609191 ATAATTCATATATATT
1 ATAATTAATATA-ATT
18609207 ATAATTAATATAATT
1 ATAATTAATATAATT
18609222 ATA
1 ATA
18609225 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:18626002 original size:29 final size:28
Alignment explanation
Indices: 18625966--18626043 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
18625956 TCATGAGATT
18625966 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
18625996 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
18626023 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
18626044 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:18626317 original size:173 final size:174
Alignment explanation
Indices: 18625996--18626322 Score: 566
Period size: 173 Copynumber: 1.9 Consensus size: 174
18625986 AAATTGTACA
* *
18625996 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* *
18626061 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
18626126 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * *
18626170 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
*
18626235 TGTGC-AACCCAGTATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
18626299 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
18626323 ACCTTGAGTT
Statistics
Matches: 144, Mismatches: 9, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 64 0.44
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:18633597 original size:39 final size:40
Alignment explanation
Indices: 18633476--18633660 Score: 189
Period size: 40 Copynumber: 4.7 Consensus size: 40
18633466 GCTACTCGTT
*
18633476 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAATCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATT-TAGTAACTCGCA
* *
18633516 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCTCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* * *
18633556 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
* * * * * *
18633595 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAGCCCGGATTTAGTAAC-TCGCA
* *
18633636 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
18633661 CATCATTCAA
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
38 2 0.02
39 31 0.25
40 78 0.63
41 12 0.10
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
Found at i:18633620 original size:79 final size:80
Alignment explanation
Indices: 18633476--18633660 Score: 191
Period size: 79 Copynumber: 2.3 Consensus size: 80
18633466 GCTACTCGTT
* *
18633476 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAATCGCACAAATGCCTTCGGGACATAACCCG
1 CAAATGCCTTCGGG-CTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCGGGACATAACCCG
*
18633540 GATTTAGTAACTCT-CA
65 GATATAGTAACT-TACA
** * **
18633556 CAAATGCCTTCGGGCTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCGGGA-CATAACCCG
* *
18633619 GATATGGTCACTTAGCA
65 GATATAGTAACTTA-CA
*
18633636 CAAA-GCCTTCGAGACTTAGCCCGGA
1 CAAATGCCTTCG-GGCTTAGCCCGGA
18633661 CATCATTCAA
Statistics
Matches: 89, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
78 4 0.04
79 52 0.58
80 33 0.37
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATATAGTAAATCGCACAAATGCCTTCGGGACATAACCCGG
ATATAGTAACTTACA
Found at i:18641671 original size:79 final size:81
Alignment explanation
Indices: 18641554--18641738 Score: 234
Period size: 79 Copynumber: 2.3 Consensus size: 81
18641544 GCTACTCGTT
* **
18641554 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCCG
* *
18641618 GATTTAGTAAC-TCGCA
65 GATATAGTAACTTAGCA
* * **
18641634 CAAATGCCTTCGGG-CTTAGCCCGGAAATTGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
18641698 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
18641714 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
18641739 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 33 0.36
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAAATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:18641738 original size:40 final size:40
Alignment explanation
Indices: 18641535--18641738 Score: 236
Period size: 40 Copynumber: 5.1 Consensus size: 40
18641525 CGGAATTTAA
** *
18641535 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
18641575 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
18641615 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* * * *
18641654 CCGGAAATTGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
18641694 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
18641734 CCGGA
1 CCGGA
18641739 CATCATTCAA
Statistics
Matches: 140, Mismatches: 19, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.23
40 95 0.68
41 11 0.08
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:18657493 original size:43 final size:43
Alignment explanation
Indices: 18657428--18657620 Score: 289
Period size: 43 Copynumber: 4.5 Consensus size: 43
18657418 GATTTGCGAT
* *
18657428 GCTTTTCCCACAAACGCTGCTATAGACCATGACCTTTAGTGGC
1 GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
* * *
18657471 GCTTTTCCCACAAACACCGCTATACACCATGACCTTTAGCAGC
1 GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
*
18657514 GCTTTTCCCACAAACG-CACTATAGACCATGACCTTTAGCGGC
1 GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
* *
18657556 GCTTTTGCCACAAACGCCGCTATAGACCATGACCTTTAGCTGC
1 GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
**
18657599 GCTTTTATCACAAACGCCGCTA
1 GCTTTTCCCACAAACGCCGCTA
18657621 AAAGTATGTT
Statistics
Matches: 135, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
42 38 0.28
43 97 0.72
ACGTcount: A:0.25, C:0.33, G:0.16, T:0.25
Consensus pattern (43 bp):
GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
Found at i:18657548 original size:85 final size:86
Alignment explanation
Indices: 18657428--18657615 Score: 297
Period size: 85 Copynumber: 2.2 Consensus size: 86
18657418 GATTTGCGAT
* *
18657428 GCTTTTCCCACAAACGCTGCTATAGACCATGACCTTTAGTGGCGCTTTTCCCACAAACACCGCTA
1 GCTTTTCCCACAAACGCTACTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTA
18657493 TACACCATGACCTTTAGCAGC
66 TACACCATGACCTTTAGCAGC
* *
18657514 GCTTTTCCCACAAACGC-ACTATAGACCATGACCTTTAGCGGCGCTTTTGCCACAAACGCCGCTA
1 GCTTTTCCCACAAACGCTACTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTA
* *
18657578 TAGACCATGACCTTTAGCTGC
66 TACACCATGACCTTTAGCAGC
**
18657599 GCTTTTATCACAAACGC
1 GCTTTTCCCACAAACGC
18657616 CGCTAAAAGT
Statistics
Matches: 94, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
85 77 0.82
86 17 0.18
ACGTcount: A:0.26, C:0.33, G:0.16, T:0.26
Consensus pattern (86 bp):
GCTTTTCCCACAAACGCTACTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAAACACCGCTA
TACACCATGACCTTTAGCAGC
Found at i:18661209 original size:67 final size:67
Alignment explanation
Indices: 18661133--18661276 Score: 243
Period size: 67 Copynumber: 2.1 Consensus size: 67
18661123 AAAGGTCAAA
*
18661133 AAAATTATTTCATTTGGAATAAAAAGACACTGTTTTGCTATATAAAATGGCGCTATTTTTTTAAA
1 AAAATTATTTCATTTGGAATAAAAAGACACTGTTTTGCTATATAAAATGGCGCTATTATTTTAAA
18661198 GT
66 GT
* * *
18661200 AAAATTATTTCATTTGGAATAAAACGACACTTTTTTGTTATATAAAATGGCGCTATTATTTTAAA
1 AAAATTATTTCATTTGGAATAAAAAGACACTGTTTTGCTATATAAAATGGCGCTATTATTTTAAA
18661265 GT
66 GT
*
18661267 AGAATTATTT
1 AAAATTATTT
18661277 TTTGTGGCGT
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
67 72 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (67 bp):
AAAATTATTTCATTTGGAATAAAAAGACACTGTTTTGCTATATAAAATGGCGCTATTATTTTAAA
GT
Found at i:18662604 original size:21 final size:21
Alignment explanation
Indices: 18662580--18662621 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
18662570 AACCTTAAAT
* *
18662580 CCCTAACTCTTAACCTCTAAC
1 CCCTAACCCTTAACCCCTAAC
18662601 CCCTAACCCTTAACCCCTAAC
1 CCCTAACCCTTAACCCCTAAC
18662622 TCATAAACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.48, G:0.00, T:0.24
Consensus pattern (21 bp):
CCCTAACCCTTAACCCCTAAC
Found at i:18662632 original size:21 final size:21
Alignment explanation
Indices: 18662588--18662634 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
18662578 ATCCCTAACT
* * *
18662588 CTTAACCTCTAACCCCTAACC
1 CTTAACCCCTAACCCATAAAC
*
18662609 CTTAACCCCTAACTCATAAAC
1 CTTAACCCCTAACCCATAAAC
18662630 CTTAA
1 CTTAA
18662635 ATCGCAACCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.34, C:0.40, G:0.00, T:0.26
Consensus pattern (21 bp):
CTTAACCCCTAACCCATAAAC
Found at i:18662673 original size:14 final size:15
Alignment explanation
Indices: 18662654--18662686 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
18662644 CTTAAATTAG
18662654 AATCCCTAA-TCCAT
1 AATCCCTAACTCCAT
18662668 AATCCCTAACTCCAT
1 AATCCCTAACTCCAT
18662683 AATC
1 AATC
18662687 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.27
Consensus pattern (15 bp):
AATCCCTAACTCCAT
Found at i:18663157 original size:41 final size:41
Alignment explanation
Indices: 18663110--18663387 Score: 259
Period size: 41 Copynumber: 6.8 Consensus size: 41
18663100 TTTTCAAAAA
* * * * *
18663110 CGCTTCTTGGAAAATGTCGGTAAAGCCCCGATCATTAGCGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * *
18663151 CGCTTCTTGGAAAACGCCGGTAAAGCCCCGAGCATTAGTGT
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * * *
18663192 CGCATCTTGAAAAACACCGTTAAAGGCACGAGCATTAGCGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * *
18663233 CGCTTCTTGAAAAACGCCACTAAAGCCCCGACCATTAGCGA
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* *
18663274 CGCTTCTTGAAAAACGTCACTAAAGCCCCGAGCATTAGCGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * * ** **
18663315 CGATTTTTCAAAAATGCCGCTAAAGATCTAAGCATTAGCGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * * *
18663356 CACTTTTTTTAAAAATGCCTCTAAAGCCCCGA
1 CGC-TTCTTGAAAAACGCCGCTAAAGCCCCGA
18663388 AAGGTACAAA
Statistics
Matches: 194, Mismatches: 42, Indels: 1
0.82 0.18 0.00
Matches are distributed among these distances:
41 172 0.89
42 22 0.11
ACGTcount: A:0.30, C:0.27, G:0.21, T:0.22
Consensus pattern (41 bp):
CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
Found at i:18663339 original size:123 final size:124
Alignment explanation
Indices: 18663130--18663387 Score: 290
Period size: 123 Copynumber: 2.1 Consensus size: 124
18663120 AAAATGTCGG
* * * ** * *
18663130 TAAAGCCCCGATCATTAGCGGCGCTTCTTGGAAAACGCCGGTAAAGCCCCGAGCATTAGTGTCGC
1 TAAAGCCCCGACCATTAGCGACGCTTCTTGAAAAACGCCACTAAAGCCCCGAGCATTAGCGGCGC
* * * *
18663195 ATCTTGAAAAACACCGTTAAAGGCA-C-GAGCATTAGCGGCGC-TTCTTGAAAAACGCCAC
66 ATCTTCAAAAACACCGCTAAA-G-ATCTAAGCATTAGCGGCACTTTCTTGAAAAACGCCAC
*
18663253 TAAAGCCCCGACCATTAGCGACGCTTCTTGAAAAACGTCACTAAAGCCCCGAGCATTAGCGGCG-
1 TAAAGCCCCGACCATTAGCGACGCTTCTTGAAAAACGCCACTAAAGCCCCGAGCATTAGCGGCGC
* ** * * * *
18663317 ATTTTTCAAAAATGCCGCTAAAGATCTAAGCATTAGCGGCACTTTTTTTAAAAATGCCTC
66 A-TCTTCAAAAACACCGCTAAAGATCTAAGCATTAGCGGCACTTTCTTGAAAAACGCCAC
18663377 TAAAGCCCCGA
1 TAAAGCCCCGA
18663388 AAGGTACAAA
Statistics
Matches: 112, Mismatches: 19, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
121 1 0.01
122 3 0.03
123 84 0.75
124 24 0.21
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.22
Consensus pattern (124 bp):
TAAAGCCCCGACCATTAGCGACGCTTCTTGAAAAACGCCACTAAAGCCCCGAGCATTAGCGGCGC
ATCTTCAAAAACACCGCTAAAGATCTAAGCATTAGCGGCACTTTCTTGAAAAACGCCAC
Found at i:18667774 original size:54 final size:54
Alignment explanation
Indices: 18667687--18667795 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
18667677 AATCGCTATA
*
18667687 AACCGCCTCTTCGCTGTGCCGATTGGAATACATACAAAACAACCATTTTTATTC
1 AACCCCCTCTTCGCTGTGCCGATTGGAATACATACAAAACAACCATTTTTATTC
18667741 AACCCCCTCTTCGCTGTGCCGATTGGAATACATACAAAACAACCATTTTTATTC
1 AACCCCCTCTTCGCTGTGCCGATTGGAATACATACAAAACAACCATTTTTATTC
18667795 A
1 A
18667796 CTTTCTCTTC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.30, C:0.28, G:0.12, T:0.29
Consensus pattern (54 bp):
AACCCCCTCTTCGCTGTGCCGATTGGAATACATACAAAACAACCATTTTTATTC
Found at i:18686812 original size:51 final size:49
Alignment explanation
Indices: 18686745--18686875 Score: 138
Period size: 51 Copynumber: 2.6 Consensus size: 49
18686735 TGATAGGTCG
*
18686745 CATGTGTAGTACTATGTGCAGGCTACTATACGTACCAGATAGCT-TCGATCA
1 CATGTGTAGTAATATGT-CAGGCTACTATACGTACCAGATAG-TAT-GATCA
*** * * *
18686796 CATGTGTAGTAATATGTCTAGGCTACTACGTGTATCATATAGTGATGGTCA
1 CATGTGTAGTAATATGTC-AGGCTACTATACGTACCAGATAGT-ATGATCA
18686847 CATGTGTAGTAATATGTACAGGCTACTAT
1 CATGTGTAGTAATATGT-CAGGCTACTAT
18686876 CTGAATCGAT
Statistics
Matches: 68, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
50 2 0.03
51 64 0.94
52 2 0.03
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (49 bp):
CATGTGTAGTAATATGTCAGGCTACTATACGTACCAGATAGTATGATCA
Found at i:18686818 original size:101 final size:102
Alignment explanation
Indices: 18686692--18686875 Score: 264
Period size: 101 Copynumber: 1.8 Consensus size: 102
18686682 AAAGTGATGG
* * * *
18686692 TCACGTGTGTAATACTATGTGTAGGCTACTAAGTGTACCATA-A-TGATAGGTCGCATGTGTAGT
1 TCACATGTGTAATAATATGTCTAGGCTACTAAGTGTACCATATAGTGAT-GGTCACATGTGTAGT
* *
18686755 ACTATGTGCAGGCTACTATACGTACCAGATAGCTTCGA
65 AATATGTACAGGCTACTATACGTACCAGATAGCTTCGA
* * *
18686793 TCACATGTGTAGTAATATGTCTAGGCTACTACGTGTATCATATAGTGATGGTCACATGTGTAGTA
1 TCACATGTGTAATAATATGTCTAGGCTACTAAGTGTACCATATAGTGATGGTCACATGTGTAGTA
18686858 ATATGTACAGGCTACTAT
66 ATATGTACAGGCTACTAT
18686876 CTGAATCGAT
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
101 36 0.50
102 32 0.44
103 4 0.06
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (102 bp):
TCACATGTGTAATAATATGTCTAGGCTACTAAGTGTACCATATAGTGATGGTCACATGTGTAGTA
ATATGTACAGGCTACTATACGTACCAGATAGCTTCGA
Found at i:18687122 original size:16 final size:16
Alignment explanation
Indices: 18687101--18687132 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
18687091 TGATTGAAAG
*
18687101 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
18687117 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
18687133 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:18710557 original size:27 final size:27
Alignment explanation
Indices: 18710527--18710778 Score: 253
Period size: 27 Copynumber: 9.3 Consensus size: 27
18710517 AATTCGTGGC
*
18710527 AAATGACTGAAATACCCTCGATGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
18710554 AAATGACTGAAATACCCCCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* *
18710581 AAATGACCGAAATACCC-CCAATGGGTA
1 AAATGACTGAAATACCCTCGAA-GGGTA
** * * *
18710608 AAATGACCAAAATAACTTCAAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* * *
18710635 AAATGA-TAGAAATAACTTCAAAGGGTA
1 AAATGACT-GAAATACCCTCGAAGGGTA
*
18710662 AAATGA-TAGAAATACCTTCGAAGGGTA
1 AAATGACT-GAAATACCCTCGAAGGGTA
*
18710689 AAATGA-TAGAAATACCCTTGAAGGGTA
1 AAATGACT-GAAATACCCTCGAAGGGTA
* *
18710716 AAATGACCGAAATATCCCT-GATGGGTA
1 AAATGACTGAAATA-CCCTCGAAGGGTA
* * *
18710743 AAATGACTAAAATACCCCCGAAAGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
18710770 AAATGACTG
1 AAATGACTG
18710779 TTATACCCCT
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
26 6 0.03
27 184 0.93
28 7 0.04
ACGTcount: A:0.44, C:0.17, G:0.20, T:0.19
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCGAAGGGTA
Found at i:18710982 original size:26 final size:26
Alignment explanation
Indices: 18710953--18711024 Score: 99
Period size: 26 Copynumber: 2.8 Consensus size: 26
18710943 TTGCCACATA
18710953 TACTGTTATTGGAAGCTTTGTTGCAT
1 TACTGTTATTGGAAGCTTTGTTGCAT
* **
18710979 TACTGTTATTGGTAGCTTTGTTGTGT
1 TACTGTTATTGGAAGCTTTGTTGCAT
* *
18711005 TACTGTTACTGGCAGCTTTG
1 TACTGTTATTGGAAGCTTTG
18711025 CTACGTTATT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.15, C:0.12, G:0.25, T:0.47
Consensus pattern (26 bp):
TACTGTTATTGGAAGCTTTGTTGCAT
Found at i:18711032 original size:26 final size:26
Alignment explanation
Indices: 18710927--18711048 Score: 77
Period size: 26 Copynumber: 4.7 Consensus size: 26
18710917 AGGGGAAGTA
** *
18710927 TACTG-TACTGGTGGCTTTGCCACAT
1 TACTGTTACTGGCAGCTTTGCTACAT
* * * *
18710952 ATACTGTTATTGGAAGCTTTGTTGCAT
1 -TACTGTTACTGGCAGCTTTGCTACAT
* * * ***
18710979 TACTGTTATTGGTAGCTTTGTTGTGT
1 TACTGTTACTGGCAGCTTTGCTACAT
*
18711005 TACTGTTACTGGCAGCTTTGCTACGT
1 TACTGTTACTGGCAGCTTTGCTACAT
* *
18711031 TATTATT-CTGGCAGCTTT
1 TACTGTTACTGGCAGCTTT
18711049 ACTGCGATAT
Statistics
Matches: 79, Mismatches: 16, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
25 11 0.14
26 54 0.68
27 14 0.18
ACGTcount: A:0.16, C:0.16, G:0.23, T:0.44
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTACAT
Found at i:18718181 original size:27 final size:27
Alignment explanation
Indices: 18718149--18718426 Score: 290
Period size: 27 Copynumber: 10.3 Consensus size: 27
18718139 AATTTATGGG
* *
18718149 AAAATAACCGAAATACCCCCGATGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* *
18718176 AAAAT-ACCTAAAATACCCTCGAAGGGT
1 AAAATGACC-GAAATACCCCCGAAGGGT
* *
18718203 AAAATGATCAAAATACCCCCGAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* **
18718230 AAAATGACTGAAATACCCTAGATA-GGT
1 AAAATGACCGAAATACCCCCGA-AGGGT
** *
18718257 AAAATGAATGAAAGACCCCCGAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* ** ** **
18718284 AAAATAATTGAAATACCCTTGAAGTTT
1 AAAATGACCGAAATACCCCCGAAGGGT
* * *
18718311 AAAATGACCAAAATACCCTCGATGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
*
18718338 AAAATGACTGAAATACCCCCGAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
* *
18718365 AAAATCACCGAAATACCCCCGATGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
*
18718392 AAAATGATCGAAATACCCCCGAAGGGT
1 AAAATGACCGAAATACCCCCGAAGGGT
18718419 AAAATGAC
1 AAAATGAC
18718427 TGTTATACCC
Statistics
Matches: 207, Mismatches: 40, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
26 4 0.02
27 200 0.97
28 3 0.01
ACGTcount: A:0.43, C:0.21, G:0.19, T:0.18
Consensus pattern (27 bp):
AAAATGACCGAAATACCCCCGAAGGGT
Found at i:18718258 original size:81 final size:81
Alignment explanation
Indices: 18718149--18718428 Score: 337
Period size: 81 Copynumber: 3.5 Consensus size: 81
18718139 AATTTATGGG
* * * * * *
18718149 AAAATAACCGAAATACCCCCGATGGGTAAAAT-ACCTAAAATACCCTCGAAGGGTAAAATGATCA
1 AAAATGACCGAAATACCCTCGATGGGTAAAATGA-CTGAAATACCCCCGAAGGGTAAAATAATCG
18718213 AAATACCCCCGAAGGGT
65 AAATACCCCCGAAGGGT
* * * * * *
18718230 AAAATGACTGAAATACCCTAGATAGGTAAAATGAATGAAAGACCCCCGAAGGGTAAAATAATTGA
1 AAAATGACCGAAATACCCTCGATGGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATAATCGA
** **
18718295 AATACCCTTGAAGTTT
66 AATACCCCCGAAGGGT
* * *
18718311 AAAATGACCAAAATACCCTCGATGGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATCACCGA
1 AAAATGACCGAAATACCCTCGATGGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATAATCGA
*
18718376 AATACCCCCGATGGGT
66 AATACCCCCGAAGGGT
* * *
18718392 AAAATGATCGAAATACCCCCGAAGGGTAAAATGACTG
1 AAAATGACCGAAATACCCTCGATGGGTAAAATGACTG
18718429 TTATACCCTT
Statistics
Matches: 164, Mismatches: 34, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
81 163 0.99
82 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.19, T:0.18
Consensus pattern (81 bp):
AAAATGACCGAAATACCCTCGATGGGTAAAATGACTGAAATACCCCCGAAGGGTAAAATAATCGA
AATACCCCCGAAGGGT
Found at i:18718648 original size:26 final size:25
Alignment explanation
Indices: 18718619--18718667 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
18718609 TACTAGCAGC
18718619 TTTGCTACGTTACTATTACTGGCAAT
1 TTTGCTACGTTACTATT-CTGGCAAT
* * *
18718645 TTTGTTGCGTTATTATTCTGGCA
1 TTTGCTACGTTACTATTCTGGCA
18718668 GCTTTACTCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 6 0.30
26 14 0.70
ACGTcount: A:0.18, C:0.16, G:0.18, T:0.47
Consensus pattern (25 bp):
TTTGCTACGTTACTATTCTGGCAAT
Found at i:18721857 original size:10 final size:9
Alignment explanation
Indices: 18721844--18721909 Score: 51
Period size: 10 Copynumber: 6.7 Consensus size: 9
18721834 AGCTCGTGGA
18721844 AGCTGACTTG
1 AGCTGA-TTG
*
18721854 AGCTCGAATG
1 AGCT-GATTG
18721864 AGCTGACTTG
1 AGCTGA-TTG
*
18721874 AGCTCGAGTG
1 AGCT-GATTG
18721884 AGCTGAATTG
1 AGCTG-ATTG
*
18721894 AGCTCGAGTG
1 AGCT-GATTG
18721904 AGCTGA
1 AGCTGA
18721910 ACCGCATGGA
Statistics
Matches: 46, Mismatches: 5, Indels: 11
0.74 0.08 0.18
Matches are distributed among these distances:
9 5 0.11
10 36 0.78
11 5 0.11
ACGTcount: A:0.24, C:0.18, G:0.33, T:0.24
Consensus pattern (9 bp):
AGCTGATTG
Found at i:18721910 original size:20 final size:20
Alignment explanation
Indices: 18721822--18721910 Score: 108
Period size: 20 Copynumber: 4.5 Consensus size: 20
18721812 ACGAGCTCAA
* * *
18721822 TGAGTTGAATTAAGCTCGTG
1 TGAGCTGAATTGAGCTCGAG
* *
18721842 -GAAGCTGACTTGAGCTCGAA
1 TG-AGCTGAATTGAGCTCGAG
*
18721862 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
18721882 TGAGCTGAATTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
18721902 TGAGCTGAA
1 TGAGCTGAA
18721911 CCGCATGGAA
Statistics
Matches: 60, Mismatches: 7, Indels: 4
0.85 0.10 0.06
Matches are distributed among these distances:
19 1 0.02
20 58 0.97
21 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.26
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:18729399 original size:40 final size:40
Alignment explanation
Indices: 18729362--18729545 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
18729352 GCTACTCGTT
*
18729362 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
18729402 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
18729442 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
18729481 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
18729522 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
18729546 ACATCATTCA
Statistics
Matches: 122, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:18729464 original size:79 final size:81
Alignment explanation
Indices: 18729329--18729546 Score: 238
Period size: 79 Copynumber: 2.8 Consensus size: 81
18729319 AAATCACGTA
** * *
18729329 CCTTCGGAAT-TTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCCGG-TT
1 CCTTCGG-ATCTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAAT
18729389 ATAGTAACTCGCACAAATG
64 -TAGTAACTCGCACAAATG
*
18729408 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGGG-CTTAGCCCGGAATT
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATT
*
18729470 AGTATCTCGCACAAATG
65 AGTAACTCGCACAAATG
** * * *
18729487 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGA
18729547 CATCATTCAA
Statistics
Matches: 118, Mismatches: 12, Indels: 17
0.80 0.08 0.12
Matches are distributed among these distances:
78 3 0.03
79 68 0.58
80 47 0.40
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATTA
GTAACTCGCACAAATG
Found at i:18736955 original size:40 final size:40
Alignment explanation
Indices: 18736918--18737101 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
18736908 GCTACTCGTT
*
18736918 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
18736958 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* *
18736998 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
* * * * *
18737037 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
18737078 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
18737102 ACATCATTCA
Statistics
Matches: 122, Mismatches: 14, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
38 2 0.02
39 30 0.25
40 76 0.62
41 14 0.11
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:18737035 original size:79 final size:82
Alignment explanation
Indices: 18736886--18737102 Score: 238
Period size: 79 Copynumber: 2.7 Consensus size: 82
18736876 AAATCACGTA
* ** * *
18736886 CCTTCGAAT-TTAA-CCGGATATAGCT-ACTC-GTTCAAATGCCTTCGGGACATAGCCCGG-TTA
1 CCTTCGGATCTTAACCCGGATATAG-TAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATA
18736946 TAGTAACTCGCACAAATG
65 TAGTAACTCGCACAAATG
*
18736964 CCTTCGGGA-CTTAACCCGGATTTAGTAACTCA-CACAAATGCCTTCGGG-CTTAGCCCGGAAT-
1 CCTTC-GGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATA
*
18737025 TAGTATCTCGCACAAATG
65 TAGTAACTCGCACAAATG
** * * *
18737043 CCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
1 CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGA
18737103 CATCATTCAA
Statistics
Matches: 117, Mismatches: 13, Indels: 16
0.80 0.09 0.11
Matches are distributed among these distances:
78 8 0.07
79 64 0.55
80 45 0.38
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (82 bp):
CCTTCGGATCTTAACCCGGATATAGTAACTCAGCACAAATGCCTTCGGGACTTAGCCCGGAATAT
AGTAACTCGCACAAATG
Found at i:18754436 original size:88 final size:87
Alignment explanation
Indices: 18754309--18755060 Score: 735
Period size: 88 Copynumber: 8.6 Consensus size: 87
18754299 GGACTTGTAA
* * * * * *
18754309 TCTTCGATCTACTTCACTGTCGATGC-ACGAAAGCAAGATCTGCTATCTTCAACCTACTCCACTG
1 TCTTCGATCTGCTTCGCTGTC-A-GCGAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
*
18754373 CAACCGA-GAAAGGCAAGGCTGGTG
64 CAACCGATG-GAGGCAAGGCTGGTG
* * * * **
18754397 TCTTCGATCTACTTTGCTGTCAGCGTAGGAGGGCCAGATCTGCTATCTTTAACCTATTCCACTGC
1 TCTTCGATCTGCTTCGCTGTCAGCG-AGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
* *
18754462 AACCGAGGGAGGCAAGGCTGGTA
65 AACCGATGGAGGCAAGGCTGGTG
* * * *
18754485 TCTTCGATCTGCTTCGCTGTCAGTGTAGGAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGT
1 TCTTCGATCTGCTTCGCTGTCAGCG-AGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
*
18754550 AACCGATGGAGGCAAGGCTGGGG
65 AACCGATGGAGGCAAGGCTGGTG
* * * *
18754573 TCTTTGATCTGCTTTGCTGTCAGCGCAGG-AGAGCAAGATCTGCTATCTTTAACCCGCTCCACTA
1 TCTTCGATCTGCTTCGCTGTCAGCG-AGGAAG-GCAAGATCTGCTATCTTTAACCTGCTCCACTG
* *
18754637 CAACCGATGGAGGC-AGGACT-TTA
64 CAACCGATGGAGGCAAGG-CTGGTG
* * * *
18754660 TTTTTGATTTGCTTCGCTGTCAATGC-AGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
1 TCTTCGATCTGCTTCGCTGTC-A-GCGAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
*
18754724 CAACCAATGGAGGCAAGGCTAGG-G
64 CAACCGATGGAGGCAAGGCT-GGTG
* * * * * *
18754748 TCTTCGATCTGTTTCACTATTTATGC-AGAAAGGCAAGATCTGCCATCTTTAACCTGCTCCACTG
1 TCTTCGATCTGCTTCGCT-GTCA-GCGAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
* *
18754812 AAACCAATGGAGGCAAGGCTGAG-G
64 CAACCGATGGAGGCAAGGCTG-GTG
*
18754836 TCTTCGATTTGCTTCGCTGTCTATGC-AGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
1 TCTTCGATCTGCTTCGCTGTC-A-GCGAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
*
18754900 CAACCGAGGGAGGCAAGGCT--TCG
64 CAACCGATGGAGGCAAGGCTGGT-G
* * * * *
18754923 TTTTTGATCTGCTTCGCTGTGAATAC-AGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
1 TCTTCGATCTGCTTCGCTGT-CA-GCGAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTG
* * *
18754987 CAACTGTTGGAGGCAAGGCT-TTG
64 CAACCGATGGAGGCAAGGCTGGTG
* *
18755010 -CTTTCGATCTGCTTCGCTGTCAATGC-AGGATGGTAAGATCTGCTATCTTTA
1 TC-TTCGATCTGCTTCGCTGTC-A-GCGAGGAAGGCAAGATCTGCTATCTTTA
18755061 CTGATCTGTT
Statistics
Matches: 568, Mismatches: 76, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
86 2 0.00
87 194 0.34
88 368 0.65
89 4 0.01
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (87 bp):
TCTTCGATCTGCTTCGCTGTCAGCGAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGCA
ACCGATGGAGGCAAGGCTGGTG
Found at i:18754524 original size:176 final size:175
Alignment explanation
Indices: 18754308--18755060 Score: 844
Period size: 176 Copynumber: 4.3 Consensus size: 175
18754298 AGGACTTGTA
* * * * * * **
18754308 ATCTTCGATCTACTTCACTGTCGATGCACGAAAGCAAGATCTGCTATCTTCAACCTACTCCACTG
1 ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
* * * * *
18754373 CAACCGA-GAAAGGCAAGGCTGGTGTCTTCGATCTACTTTGCTGTCAGCGTAGGAGGGCCAGATC
66 CAACCGATG-GAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCAGCGCAGGAAGGCAAGATC
*** *
18754437 TGCTATCTTTAACCTATTCCACTGCAACCGAGGGAGGCAAGGCTGGT
130 TGCTATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCT-GT
* * *
18754484 ATCTTCGATCTGCTTCGCTGTCAGTGTAGGAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTG
1 ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
* * *
18754549 TAACCGATGGAGGCAAGGCTGGGGTCTTTGATCTGCTTTGCTGTCAGCGCAGG-AGAGCAAGATC
66 CAACCGATGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCAGCGCAGGAAG-GCAAGATC
* *
18754613 TGCTATCTTTAACCCGCTCCACTACAACCGATGGAGGC-AGGACTTT
130 TGCTATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGG-CTGT
* * *
18754659 ATTTTTGATTTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
1 ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
* * * * * *
18754724 CAACCAATGGAGGCAAGGCTAGG-GTCTTCGATCTG-TTTCACTATTTA-TGCAGAAAGGCAAGA
66 CAACCGATGGAGGCAAGGCT-GGTGTCTTCGATCTGCTTT-GCT-GTCAGCGCAGGAAGGCAAGA
* * * *
18754786 TCTGCCATCTTTAACCTGCTCCACTGAAACCAATGGAGGCAAGGCTG-
128 TCTGCTATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCTGT
* * *
18754833 AGGTCTTCGATTTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCAC
1 A--TCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCAC
* * * * * ***
18754898 TGCAACCGAGGGAGGCAAGGCT--TCGTTTTTGATCTGCTTCGCTGTGAATACAGGAAGGCAAGA
64 TGCAACCGATGGAGGCAAGGCTGGT-GTCTTCGATCTGCTTTGCTGTCAGCGCAGGAAGGCAAGA
* *
18754961 TCTGCTATCTTTAACCCGCTCCACTGCAACTGTTGGAGGCAAGGCT-T
128 TCTGCTATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCTGT
* *
18755008 -TGCTTTCGATCTGCTTCGCTGTCAATGCAGGATGGTAAGATCTGCTATCTTTA
1 AT-C-TTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTA
18755061 CTGATCTGTT
Statistics
Matches: 491, Mismatches: 69, Indels: 36
0.82 0.12 0.06
Matches are distributed among these distances:
172 1 0.00
173 1 0.00
174 51 0.10
175 207 0.42
176 230 0.47
177 1 0.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (175 bp):
ATCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTG
CAACCGATGGAGGCAAGGCTGGTGTCTTCGATCTGCTTTGCTGTCAGCGCAGGAAGGCAAGATCT
GCTATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCTGT
Found at i:18754738 original size:263 final size:261
Alignment explanation
Indices: 18754309--18755060 Score: 841
Period size: 263 Copynumber: 2.9 Consensus size: 261
18754299 GGACTTGTAA
* * * * * * * ** *
18754309 TCTTCGATCTACTTCACTGTCGATGCACGAAAGCAAGATCTGCTATCTTCAACCTACTCCACTGC
1 TCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTAC
** * * * * * **** * *
18754374 AACCGAGAAAGGCAAGGCTGGT-GTCTTCGATCTACTTTGCTGTCAGCGTAGGAGGGCCAGATCT
66 AACCGAGGGAGGCAAGGCT--TCATTTTTGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCT
*** *
18754438 GCTATCTTTAACCTATTCCACTGCAACCGAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCT
129 GCTATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCTGGT-TCTTCGATCTGCTTCGCT
* * * *
18754503 GTCAGTGTAGGAAGGCAAGATCTGCTATCTTTAACCCGCTTCACTGTAACCGATGGAGGCAAGGC
193 GTCA-TGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGAAACCAATGGAGGCAAGGC
*
18754568 TGGGG
257 TGAGG
* *
18754573 TCTTTGATCTGCTTTGCTGTC-AGCGCAGG-AGAGCAAGATCTGCTATCTTTAACCCGCTCCACT
1 TCTTCGATCTGCTTCGCTGTCTA-CGCAGGAAG-GCAAGATCTGCTATCTTTAACCCGCTCCACT
* * * *
18754636 ACAACCGATGGAGGC-AGGACTTTATTTTTGATTTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
64 ACAACCGAGGGAGGCAAGG-CTTCATTTTTGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATC
* * * *
18754700 TGCTATCTTTAACCCGCTCCACTGCAACCAATGGAGGCAAGGCTAGGGTCTTCGATCTGTTTCAC
128 TGCTATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCT-GGTTCTTCGATCTGCTTCGC
* * * * *
18754765 TATTTATGCAGAAAGGCAAGATCTGCCATCTTTAACCTGCTCCACTGAAACCAATGGAGGCAAGG
192 T-GTCATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGAAACCAATGGAGGCAAGG
18754830 CTGAGG
256 CTGAGG
* * * *
18754836 TCTTCGATTTGCTTCGCTGTCTATGCAGGAAGGCAAGATCTGCTATCTTTAACCTGCTCCACTGC
1 TCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTAC
* *
18754901 AACCGAGGGAGGCAAGGCTTCGTTTTTGATCTGCTTCGCTGTGAATACAGGAAGGCAAGATCTGC
66 AACCGAGGGAGGCAAGGCTTCATTTTTGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGC
* *
18754966 TATCTTTAACCCGCTCCACTGCAACTGTTGGAGGCAAGGCT--TTGCTTTCGATCTGCTTCGCTG
131 TATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCTGGTT-C-TTCGATCTGCTTCGCTG
* *
18755029 TCAATGCAGGATGGTAAGATCTGCTATCTTTA
194 TC-ATGCAGGAAGGCAAGATCTGCTATCTTTA
18755061 CTGATCTGTT
Statistics
Matches: 409, Mismatches: 67, Indels: 26
0.81 0.13 0.05
Matches are distributed among these distances:
260 1 0.00
261 2 0.00
262 40 0.10
263 294 0.72
264 72 0.18
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (261 bp):
TCTTCGATCTGCTTCGCTGTCTACGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTAC
AACCGAGGGAGGCAAGGCTTCATTTTTGATCTGCTTCGCTGTCAATACAGGAAGGCAAGATCTGC
TATCTTTAACCCGCTCCACTGCAACCGATGGAGGCAAGGCTGGTTCTTCGATCTGCTTCGCTGTC
ATGCAGGAAGGCAAGATCTGCTATCTTTAACCCGCTCCACTGAAACCAATGGAGGCAAGGCTGAG
G
Found at i:18756279 original size:13 final size:13
Alignment explanation
Indices: 18756243--18756270 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
18756233 CCGTCATTAC
18756243 TTTTCATTTTCAT
1 TTTTCATTTTCAT
18756256 TTTTCATTTTCAT
1 TTTTCATTTTCAT
18756269 TT
1 TT
18756271 CTTTTTTTCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.71
Consensus pattern (13 bp):
TTTTCATTTTCAT
Found at i:18757153 original size:6 final size:6
Alignment explanation
Indices: 18757131--18757187 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
18757121 TGGCCTCTCC
* * *
18757131 TTTTCT TTTTACT TTTTCT TTTTC- TTCTCT TTTT-T TTTTCA TTTTCA
1 TTTTCT TTTT-CT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT
18757178 TTTTCAT TTT
1 TTTTC-T TTT
18757188 GACTTTGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
5 9 0.21
6 25 0.58
7 9 0.21
ACGTcount: A:0.07, C:0.16, G:0.00, T:0.77
Consensus pattern (6 bp):
TTTTCT
Found at i:18757158 original size:22 final size:22
Alignment explanation
Indices: 18757133--18757176 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
18757123 GCCTCTCCTT
*
18757133 TTCT-TTTTACTTTTTCTTTTTC
1 TTCTCTTTT-CTTTTTCATTTTC
*
18757155 TTCTCTTTTTTTTTTCATTTTC
1 TTCTCTTTTCTTTTTCATTTTC
18757177 ATTTTCATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.05, C:0.18, G:0.00, T:0.77
Consensus pattern (22 bp):
TTCTCTTTTCTTTTTCATTTTC
Found at i:18763704 original size:14 final size:14
Alignment explanation
Indices: 18763685--18763729 Score: 65
Period size: 14 Copynumber: 3.1 Consensus size: 14
18763675 TTGAACTTGG
18763685 TTTTATTTATTTAT
1 TTTTATTTATTTAT
18763699 TTTTATTTATTT-T
1 TTTTATTTATTTAT
18763712 TGTTTATTTATTTGAT
1 T-TTTATTTATTT-AT
18763728 TT
1 TT
18763730 GGGCCGGGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.07
14 23 0.82
15 1 0.04
16 2 0.07
ACGTcount: A:0.18, C:0.00, G:0.04, T:0.78
Consensus pattern (14 bp):
TTTTATTTATTTAT
Found at i:18763705 original size:10 final size:10
Alignment explanation
Indices: 18763690--18763720 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
18763680 CTTGGTTTTA
18763690 TTTATTTATT
1 TTTATTTATT
18763700 TTTATTTATT
1 TTTATTTATT
*
18763710 TTTGTTTATT
1 TTTATTTATT
18763720 T
1 T
18763721 ATTTGATTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (10 bp):
TTTATTTATT
Found at i:18785873 original size:39 final size:40
Alignment explanation
Indices: 18785769--18785952 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
18785759 TTGAATGATG
* * * * *
18785769 TCCGGGCTAAGTCTCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
18785809 TCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
18785849 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
18785888 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
18785929 -CCGGGCTATGTCCC-AATGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18785953 AATGAGTAGC
Statistics
Matches: 122, Mismatches: 17, Indels: 11
0.81 0.11 0.07
Matches are distributed among these distances:
39 43 0.35
40 69 0.57
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:18785905 original size:79 final size:80
Alignment explanation
Indices: 18785769--18785942 Score: 194
Period size: 79 Copynumber: 2.2 Consensus size: 80
18785759 TTGAATGATG
* * *
18785769 TCCGGGCTAAGTCTCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGTATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
18785834 GTGCGAGATACTAAT
66 GTGCGAGATACTAAT
* * * **
18785849 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
18785911 TTGTGCGAGTTACT-AT
64 TTGTGCGAGATACTAAT
* *
18785927 AACCGGGCTATGTCCC
1 -TCCGGGCTAAGTCCC
18785943 AATGCATTTG
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.04
79 55 0.70
80 21 0.27
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAT
Found at i:18785970 original size:79 final size:78
Alignment explanation
Indices: 18785822--18785985 Score: 172
Period size: 79 Copynumber: 2.1 Consensus size: 78
18785812 GGACTAAGAT
* * **
18785822 CCGAAGGTATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
18785887 ATCCGGGTTAAGTC
66 ATCC-GGTTAAATC
* * * *
18785901 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCC-AATGCATTTGAATGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
18785963 TATATCCGGTTAAATT
63 TAAATCCGGTTAAATC
18785979 CCGAAGG
1 CCGAAGG
18785986 TACGTGATTT
Statistics
Matches: 71, Mismatches: 11, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
78 18 0.25
79 50 0.70
80 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.27
Consensus pattern (78 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGTTAAATC
Found at i:18792028 original size:39 final size:40
Alignment explanation
Indices: 18791859--18792083 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
18791849 GCTCCTCGTT
* *
18791859 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
18791899 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
18791939 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * * * *
18791979 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * ** * * * * *
18792018 CGAATACCTTC-GGATCTTAGTCCAGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
18792059 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
18792084 CATCATTCAA
Statistics
Matches: 158, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
38 2 0.01
39 30 0.19
40 115 0.73
41 11 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:18796004 original size:48 final size:48
Alignment explanation
Indices: 18795948--18796048 Score: 132
Period size: 48 Copynumber: 2.1 Consensus size: 48
18795938 CTATTTGTGA
*
18795948 ACAAGCCACCACACAGATA-CTGATAAATAGTCAAATAACACATCATGG
1 ACAAGCCACCACACAGATATC-GATAAACAGTCAAATAACACATCATGG
* * ** *
18795996 ACAAGCCACCACATAGATATCGATAAACGGTCGTATAACACATCGTGG
1 ACAAGCCACCACACAGATATCGATAAACAGTCAAATAACACATCATGG
18796044 ACAAG
1 ACAAG
18796049 AAACCACATA
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
48 45 0.98
49 1 0.02
ACGTcount: A:0.43, C:0.25, G:0.16, T:0.17
Consensus pattern (48 bp):
ACAAGCCACCACACAGATATCGATAAACAGTCAAATAACACATCATGG
Found at i:18802156 original size:41 final size:41
Alignment explanation
Indices: 18802110--18802190 Score: 110
Period size: 41 Copynumber: 2.0 Consensus size: 41
18802100 AAAGAAAGAA
* *
18802110 AAAAGACAA-ATTTTTGTGTTTAGTAGAAGAGAAAATAAAAC
1 AAAAGACAACA-TTTTGTGTTTACTAGAAGAGAAAACAAAAC
* *
18802151 AAAAGAGAACATTTTGTGTTTACTAGGAGAGAAAACAAAA
1 AAAAGACAACATTTTGTGTTTACTAGAAGAGAAAACAAAA
18802191 ATTGCTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 34 0.97
42 1 0.03
ACGTcount: A:0.51, C:0.06, G:0.19, T:0.25
Consensus pattern (41 bp):
AAAAGACAACATTTTGTGTTTACTAGAAGAGAAAACAAAAC
Found at i:18807245 original size:22 final size:23
Alignment explanation
Indices: 18807211--18807255 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
18807201 CATATAAGCA
18807211 TTCAACTAAACAT-CATTATAAG
1 TTCAACTAAACATCCATTATAAG
* *
18807233 TTCACCTATACATGCCATTATAA
1 TTCAACTAAACAT-CCATTATAA
18807256 CCTTGGCCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 11 0.58
24 8 0.42
ACGTcount: A:0.40, C:0.22, G:0.04, T:0.33
Consensus pattern (23 bp):
TTCAACTAAACATCCATTATAAG
Found at i:18808397 original size:17 final size:17
Alignment explanation
Indices: 18808375--18808429 Score: 69
Period size: 17 Copynumber: 3.2 Consensus size: 17
18808365 TCTAATTGCC
18808375 AATTGATACCTTTAACT
1 AATTGATACCTTTAACT
*
18808392 AATTGA-A-CTTCATAGCT
1 AATTGATACCTT--TAACT
18808409 AATTGATACCTTTAACT
1 AATTGATACCTTTAACT
18808426 AATT
1 AATT
18808430 TTATGCCCAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
15 3 0.09
16 1 0.03
17 24 0.75
18 1 0.03
19 3 0.09
ACGTcount: A:0.36, C:0.16, G:0.07, T:0.40
Consensus pattern (17 bp):
AATTGATACCTTTAACT
Found at i:18811428 original size:8 final size:8
Alignment explanation
Indices: 18811415--18811441 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
18811405 AGGAAAGGTC
18811415 TTGATATT
1 TTGATATT
18811423 TTGATATT
1 TTGATATT
18811431 TTGATATT
1 TTGATATT
18811439 TTG
1 TTG
18811442 TGCTTGTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.15, T:0.63
Consensus pattern (8 bp):
TTGATATT
Found at i:18826388 original size:29 final size:29
Alignment explanation
Indices: 18826346--18826595 Score: 126
Period size: 29 Copynumber: 8.6 Consensus size: 29
18826336 CGATAATCAT
* *
18826346 AACCGTCCCTTTTCATATTCAATGGTCGA
1 AACCATCCCTTTTCATAATCAATGGTCGA
* * *
18826375 AACCATCCATTTTCATTAATCGATGGTCGT
1 AACCATCCCTTTTCA-TAATCAATGGTCGA
* * * *
18826405 CACCATCCCTTTTCATAATCGATAGCCGA
1 AACCATCCCTTTTCATAATCAATGGTCGA
* * * *
18826434 AGCTATCCCTTTTAATAATCAAT-TTCGGA
1 AACCATCCCTTTTCATAATCAATGGTC-GA
* * * * *
18826463 AACTATCCTTTTTCATAATCGATAGCCGA
1 AACCATCCCTTTTCATAATCAATGGTCGA
* * ** * * * *
18826492 AGCTATCTTTTTTTATATTCGATGGTCGT
1 AACCATCCCTTTTCATAATCAATGGTCGA
* * * ** *
18826521 CACCGTCCCTTTTCATAGTTGATGGTCGT
1 AACCATCCCTTTTCATAATCAATGGTCGA
* * * *
18826550 CACCATCCCTTTTCATAATCGATAG-CCA
1 AACCATCCCTTTTCATAATCAATGGTCGA
*
18826578 AAGCTATCCCTTTTCATA
1 AA-CCATCCCTTTTCATA
18826596 TTCGATAACC
Statistics
Matches: 170, Mismatches: 47, Indels: 8
0.76 0.21 0.04
Matches are distributed among these distances:
28 3 0.02
29 142 0.84
30 25 0.15
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.36
Consensus pattern (29 bp):
AACCATCCCTTTTCATAATCAATGGTCGA
Found at i:18826501 original size:28 final size:29
Alignment explanation
Indices: 18826409--18826652 Score: 134
Period size: 29 Copynumber: 8.4 Consensus size: 29
18826399 GGTCGTCACC
*
18826409 ATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCTTTTTCATAATCGATAGCCGAAGCT
* * * ** * *
18826438 ATCCCTTTTAATAATCAATTTCGGAAACT
1 ATCCTTTTTCATAATCGATAGCCGAAGCT
18826467 ATCCTTTTTCATAATCGATAGCCGAAGCT
1 ATCCTTTTTCATAATCGATAGCCGAAGCT
* * * * * * *
18826496 ATCTTTTTTTATATTCGATGGTCGTCA-CC
1 ATCCTTTTTCATAATCGATAGCCG-AAGCT
* * * * * * * *
18826525 GTCCCTTTTCATAGTTGATGGTCGTCA-CC
1 ATCCTTTTTCATAATCGATAGCCG-AAGCT
* *
18826554 ATCCCTTTTCATAATCGATAGCCAAAGCT
1 ATCCTTTTTCATAATCGATAGCCGAAGCT
* * *
18826583 ATCCCTTTTCATATTCGATAACCGAAGCT
1 ATCCTTTTTCATAATCGATAGCCGAAGCT
* * * * *
18826612 ACCCCTTTTCATATTCGAT-TCTCAAAGCT
1 ATCCTTTTTCATAATCGATAGC-CGAAGCT
*
18826641 ACCCTTTTTCAT
1 ATCCTTTTTCAT
18826653 TGGTCAATGA
Statistics
Matches: 171, Mismatches: 41, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
28 2 0.01
29 168 0.98
30 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.37
Consensus pattern (29 bp):
ATCCTTTTTCATAATCGATAGCCGAAGCT
Found at i:18826534 original size:58 final size:58
Alignment explanation
Indices: 18826391--18826630 Score: 180
Period size: 58 Copynumber: 4.1 Consensus size: 58
18826381 CCATTTTCAT
18826391 TAATCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTAA
1 TAATCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTAA
* * ** * * ** *
18826449 TAATCAAT-TTCGGAAACTATCCTTTTTCATAATCGATAGCCGAAGCTATCTTTTTTTA
1 TAATCGATGGTC-GTCACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTAA
* * * * * * * * *
18826507 TATTCGATGGTCGTCACCGTCCCTTTTCATAGTTGATGGTCGTCA-CCATCCCTTTTCA
1 TAATCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCG-AAGCTATCCCTTTTAA
* *** * * * * *
18826565 TAATCGATAG-CCAAAGCTATCCCTTTTCATATTCGATAACCGAAGCTACCCCTTTTCA
1 TAATCGATGGTCGTCA-CCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTAA
*
18826623 TATTCGAT
1 TAATCGAT
18826631 TCTCAAAGCT
Statistics
Matches: 135, Mismatches: 42, Indels: 10
0.72 0.22 0.05
Matches are distributed among these distances:
57 5 0.04
58 127 0.94
59 3 0.02
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.36
Consensus pattern (58 bp):
TAATCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTAA
Found at i:18826558 original size:116 final size:116
Alignment explanation
Indices: 18826384--18826630 Score: 273
Period size: 116 Copynumber: 2.1 Consensus size: 116
18826374 AAACCATCCA
* *
18826384 TTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTAA
1 TTTTCA-TATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCCATCCCTTTTAA
** * * * * **
18826449 TAATCAATTTCGGAAA-CTATCCTTTTTCATAATCGATAGCCGAAGCTATCTT
65 TAATCAATAGC-CAAAGCTATCCCTTTTCATAATCGATAACCGAAGCTACCCC
* * * * * * * *
18826501 TTTTTATATTCGATGGTCGTCACCGTCCCTTTTCATAGTTGATGGTCGTCA-CCATCCCTTTTCA
1 TTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCG-AAGCCATCCCTTTTAA
* *
18826565 TAATCGATAGCCAAAGCTATCCCTTTTCATATTCGATAACCGAAGCTACCCC
65 TAATCAATAGCCAAAGCTATCCCTTTTCATAATCGATAACCGAAGCTACCCC
18826617 TTTTCATATTCGAT
1 TTTTCATATTCGAT
18826631 TCTCAAAGCT
Statistics
Matches: 107, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
115 3 0.03
116 98 0.92
117 6 0.06
ACGTcount: A:0.25, C:0.26, G:0.13, T:0.37
Consensus pattern (116 bp):
TTTTCATATTCGATGGTCGTCACCATCCCTTTTCATAATCGATAGCCGAAGCCATCCCTTTTAAT
AATCAATAGCCAAAGCTATCCCTTTTCATAATCGATAACCGAAGCTACCCC
Found at i:18826650 original size:87 final size:85
Alignment explanation
Indices: 18826409--18826652 Score: 203
Period size: 87 Copynumber: 2.8 Consensus size: 85
18826399 GGTCGTCACC
* * * * *
18826409 ATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTTTTAATAATCAATT-TCGGAAACTATCCTT
1 ATCCCTTTTCATATTCGATAGCCGAAGCTA-CCCTTTTCATATTCGATTCTC--AAACTACCCTT
*
18826473 TTTCATAATCGATAGCCGAAGCT
63 TTTCATAATCGATAGCCAAAGCT
** * * * * * *
18826496 ATCTTTTTTTATATTCGATGGTCGTCACCGT-CCCTTTTCATAGTT-GATGGTCGTC--ACCATC
1 ATCCCTTTTCATATTCGATAGCCG-AAGC-TACCCTTTTCATA-TTCGAT--TC-TCAAACTA-C
18826557 CC-TTTTCATAATCGATAGCCAAAGCT
59 CCTTTTTCATAATCGATAGCCAAAGCT
*
18826583 ATCCCTTTTCATATTCGATAACCGAAGCTACCCCTTTTCATATTCGATTCTCAAAGCTACCCTTT
1 ATCCCTTTTCATATTCGATAGCCGAAGCTA-CCCTTTTCATATTCGATTCTCAAA-CTACCCTTT
18826648 TTCAT
64 TTCAT
18826653 TGGTCAATGA
Statistics
Matches: 119, Mismatches: 23, Indels: 30
0.69 0.13 0.17
Matches are distributed among these distances:
84 2 0.02
85 3 0.03
86 8 0.07
87 97 0.82
88 5 0.04
89 2 0.02
91 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.11, T:0.37
Consensus pattern (85 bp):
ATCCCTTTTCATATTCGATAGCCGAAGCTACCCTTTTCATATTCGATTCTCAAACTACCCTTTTT
CATAATCGATAGCCAAAGCT
Found at i:18834274 original size:18 final size:19
Alignment explanation
Indices: 18834241--18834279 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
18834231 TTTTATAAAT
18834241 TGTGAATTATATTTG-ATA
1 TGTGAATTATATTTGAATA
18834259 TGTGAATTA-ATATTGAATA
1 TGTGAATTATAT-TTGAATA
18834278 TG
1 TG
18834280 GAACGAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 2 0.11
18 12 0.63
19 5 0.26
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.46
Consensus pattern (19 bp):
TGTGAATTATATTTGAATA
Found at i:18834532 original size:23 final size:23
Alignment explanation
Indices: 18834505--18834586 Score: 110
Period size: 23 Copynumber: 3.6 Consensus size: 23
18834495 AGTGTTGTTG
** *
18834505 ATCAGTGGTAGCTTTGCCTACAT
1 ATCAGTGGTAGCTACGACTACAT
*
18834528 CTCAGTGGTAGCTACGACTACAT
1 ATCAGTGGTAGCTACGACTACAT
* *
18834551 TTCAGTGGTAGCTACGGCTACAT
1 ATCAGTGGTAGCTACGACTACAT
18834574 ATCAGTGGTAGCT
1 ATCAGTGGTAGCT
18834587 TCAGTTAGGG
Statistics
Matches: 52, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 52 1.00
ACGTcount: A:0.23, C:0.22, G:0.24, T:0.30
Consensus pattern (23 bp):
ATCAGTGGTAGCTACGACTACAT
Found at i:18834618 original size:16 final size:17
Alignment explanation
Indices: 18834597--18834630 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
18834587 TCAGTTAGGG
*
18834597 GCAAAAGT-TTAATTTT
1 GCAAAAGTATGAATTTT
18834613 GCAAAAGTATGAATTTT
1 GCAAAAGTATGAATTTT
18834630 G
1 G
18834631 GACTAAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.38, C:0.06, G:0.18, T:0.38
Consensus pattern (17 bp):
GCAAAAGTATGAATTTT
Found at i:18835842 original size:219 final size:220
Alignment explanation
Indices: 18835461--18835893 Score: 665
Period size: 219 Copynumber: 2.0 Consensus size: 220
18835451 CATTGAAATG
18835461 TTAAGTTATATTCATGATTTACGTACATACTAAGCATTATATGCTTACATAGTCTTCTTTCTCAT
1 TTAAGTTATATTCATGATTTACGTACATACTAAGCATTATATGCTTACATAGTCTTCTTTCTCAT
* * * *
18835526 GTTTTTTTTATAATCGGAATCTCAATCGGTTTGGAAGTTTGTCGAAGATCTATCACACTATCCAG
66 G-TTTTTTTATAATCGGAAGCTCAATCAGTTTGGAAGCTCGTCGAAGATCTATCACACTATCCAG
* * *
18835591 TGAATATATTGTTAGGTTTTTATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTGTG
130 TGAATACATTGGTAGGTTTTTATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTATG
*
18835656 TTTAATGGTCTTGTTGATAGGTGGAC
195 TTTAATGATCTTGTTGATAGGTGGAC
* * * *
18835682 TTAAGTTATATTCATGATTTAC-TAACTTACTAATCATTATATGCTTACGTAGTTTTCTTTCTCA
1 TTAAGTTATATTCATGATTTACGT-ACATACTAAGCATTATATGCTTACATAGTCTTCTTTCTCA
* * * * *
18835746 TG-TTTTTTATAATCGGAAGCTCGATTAGTTTTGATGCTCGTCGGAGATCTATCACACTATCCAG
65 TGTTTTTTTATAATCGGAAGCTCAATCAGTTTGGAAGCTCGTCGAAGATCTATCACACTATCCAG
18835810 TGAATACATTGGTA-GTTTTTGATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTAT
130 TGAATACATTGGTAGGTTTTT-ATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTAT
18835874 GTTTAATGATCTTGTTGATA
194 GTTTAATGATCTTGTTGATA
18835894 TGGTTAGCAT
Statistics
Matches: 193, Mismatches: 17, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
218 6 0.03
219 126 0.65
220 1 0.01
221 60 0.31
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.42
Consensus pattern (220 bp):
TTAAGTTATATTCATGATTTACGTACATACTAAGCATTATATGCTTACATAGTCTTCTTTCTCAT
GTTTTTTTATAATCGGAAGCTCAATCAGTTTGGAAGCTCGTCGAAGATCTATCACACTATCCAGT
GAATACATTGGTAGGTTTTTATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTATGT
TTAATGATCTTGTTGATAGGTGGAC
Found at i:18841339 original size:15 final size:15
Alignment explanation
Indices: 18841319--18841352 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
18841309 AAAAGTGTCA
18841319 TCTTCTTCAAACTG-T
1 TCTTCTTC-AACTGAT
18841334 TCTTCTTCAACTGAT
1 TCTTCTTCAACTGAT
18841349 TCTT
1 TCTT
18841353 TAAGAGAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.18, C:0.26, G:0.06, T:0.50
Consensus pattern (15 bp):
TCTTCTTCAACTGAT
Found at i:18843845 original size:79 final size:81
Alignment explanation
Indices: 18843709--18843893 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
18843699 TTGAATGATG
*
18843709 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
18843773 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
18843788 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
* *
18843850 TTTGTGTGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
18843868 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
18843894 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:18843907 original size:40 final size:40
Alignment explanation
Indices: 18843710--18843893 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
18843700 TGAATGATGT
* * * *
18843710 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
18843750 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
18843790 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
18843828 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
18843869 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
18843894 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:18843915 original size:79 final size:79
Alignment explanation
Indices: 18843710--18843926 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
18843700 TGAATGATGT
** * * * **
18843710 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
18843773 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
18843790 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
* *
18843855 GTGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
18843869 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
18843927 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.61
80 42 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:18846255 original size:220 final size:221
Alignment explanation
Indices: 18845858--18846286 Score: 666
Period size: 220 Copynumber: 1.9 Consensus size: 221
18845848 ATTGAAATGG
18845858 TAAGTTATATTCATAATTTACGAACTTACTAAGCATTATATGCTTACGTAGTTTTCTTTCTCATG
1 TAAGTTATATTCATAATTTACGAACTTACTAAGCATTATATGCTTACGTAGTTTTCTTTCTCATG
* * * *
18845923 TTTTTTTAAAATCAGAAGCTCGATAGGTTTGGATGCTTGTTGGAGATCTATCACACTATCCAACG
66 TTTTTTCAAAATCAGAAGCTCGATAGGTTTGGAAGCTCGTCGGAGATCTATCACACTATCCAACG
18845988 AATATATCGATAGTTTTTTTATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTCTAT
131 AATATATCGATAGTTTTTTTATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTCTAT
18846053 TTAATGATCTTGTTTATAGGTGGAAT
196 TTAATGATCTTGTTTATAGGTGGAAT
* * * *
18846079 TAAGTTGTATTCATGATTTATGAACTTACTAAGCATTATATGCTTATGTAGTTTTCTTTCGT-AT
1 TAAGTTATATTCATAATTTACGAACTTACTAAGCATTATATGCTTACGTAGTTTTCTTTC-TCAT
* ** *
18846143 -TTTTTTCATAATTGGAAGCTCGATCA-GTTTGGAAGCTCGTCGGAGATCTATCACACTATCCAG
65 GTTTTTTCAAAATCAGAAGCTCGAT-AGGTTTGGAAGCTCGTCGGAGATCTATCACACTATCCAA
* * * *
18846206 CGAATATATGGGTAGTTTTTTTATGTTTTGGCCAAGGTTATAGTGGCATGTATAGGTGGACTTGT
129 CGAATATATCGATAGTTTTTTTATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTCT
*
18846271 GTTTAATGATCTTGTT
194 ATTTAATGATCTTGTT
18846287 GATATGGTTG
Statistics
Matches: 189, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
220 129 0.68
221 59 0.31
222 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.42
Consensus pattern (221 bp):
TAAGTTATATTCATAATTTACGAACTTACTAAGCATTATATGCTTACGTAGTTTTCTTTCTCATG
TTTTTTCAAAATCAGAAGCTCGATAGGTTTGGAAGCTCGTCGGAGATCTATCACACTATCCAACG
AATATATCGATAGTTTTTTTATGTTTTGGCCAAGGTTATAATGGCATGTATAGGTGGACTTCTAT
TTAATGATCTTGTTTATAGGTGGAAT
Found at i:18853209 original size:14 final size:15
Alignment explanation
Indices: 18853184--18853212 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
18853174 AAAATGGTAA
18853184 CTTGGTATGTTTGTG
1 CTTGGTATGTTTGTG
18853199 CTTGG-ATGTTTGTG
1 CTTGGTATGTTTGTG
18853213 GATTGTTGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.07, C:0.07, G:0.34, T:0.52
Consensus pattern (15 bp):
CTTGGTATGTTTGTG
Found at i:18860952 original size:48 final size:49
Alignment explanation
Indices: 18860857--18860956 Score: 148
Period size: 48 Copynumber: 2.1 Consensus size: 49
18860847 TCCTATAGAG
** *
18860857 AACATATGAAAAGCATTAAACATGTTATATTCTTTCCAAAAGGAATTAT
1 AACATATGAAAAGCATTAAACAAATTATATTCTTTCCAAAAAGAATTAT
* *
18860906 AACATATGAAAAGTATTAAA-AAATTATATTCTTTCCAAAAATAATTAT
1 AACATATGAAAAGCATTAAACAAATTATATTCTTTCCAAAAAGAATTAT
18860954 AAC
1 AAC
18860957 TATCATGTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
48 27 0.59
49 19 0.41
ACGTcount: A:0.49, C:0.11, G:0.07, T:0.33
Consensus pattern (49 bp):
AACATATGAAAAGCATTAAACAAATTATATTCTTTCCAAAAAGAATTAT
Found at i:18863325 original size:42 final size:42
Alignment explanation
Indices: 18863287--18863367 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
18863277 GTCACACAGT
**
18863287 CATGTACCTTAGTCACA-AGGGTGTGTCCCTCAGCCACACAAC
1 CATGTACCTTAGTCACACA-GGCATGTCCCTCAGCCACACAAC
* * *
18863329 CGTGTATCTTAGTCACACAGGCATGTCCCTTAGCCACAC
1 CATGTACCTTAGTCACACAGGCATGTCCCTCAGCCACAC
18863368 GGTCTGCTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
42 32 0.97
43 1 0.03
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (42 bp):
CATGTACCTTAGTCACACAGGCATGTCCCTCAGCCACACAAC
Found at i:18863360 original size:21 final size:21
Alignment explanation
Indices: 18863267--18863367 Score: 78
Period size: 21 Copynumber: 4.8 Consensus size: 21
18863257 TCACATGAAA
*
18863267 ATGTACCTTAGTCACACAGTC
1 ATGTACCTTAGTCACACAGGC
*
18863288 ATGTACCTTAGTCACA-AGGGT
1 ATGTACCTTAGTCACACA-GGC
* * * * **
18863309 GTGTCCCTCAGCCACACAACC
1 ATGTACCTTAGTCACACAGGC
* *
18863330 GTGTATCTTAGTCACACAGGC
1 ATGTACCTTAGTCACACAGGC
* *
18863351 ATGTCCCTTAGCCACAC
1 ATGTACCTTAGTCACAC
18863368 GGTCTGCTCA
Statistics
Matches: 59, Mismatches: 19, Indels: 4
0.72 0.23 0.05
Matches are distributed among these distances:
20 1 0.02
21 57 0.97
22 1 0.02
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (21 bp):
ATGTACCTTAGTCACACAGGC
Found at i:18864411 original size:16 final size:16
Alignment explanation
Indices: 18864380--18864416 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
18864370 ATATGAAGAA
18864380 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
18864396 TATT-TTTAAAAGTTAT
1 TATTATTTAAAA-TTAT
18864412 TATTA
1 TATTA
18864417 AAATAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.57
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:18864933 original size:15 final size:16
Alignment explanation
Indices: 18864905--18864934 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
18864895 GTAAAATTGA
18864905 TTGAAAATTTAATTTT
1 TTGAAAATTTAATTTT
18864921 TTGAAAA-TTAATTT
1 TTGAAAATTTAATTT
18864935 AATAATATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (16 bp):
TTGAAAATTTAATTTT
Found at i:18901320 original size:24 final size:24
Alignment explanation
Indices: 18901293--18901365 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 24
18901283 CTTTCCTTTT
18901293 TGTCTTGACTCTATGCCTTCCAGC
1 TGTCTTGACTCTATGCCTTCCAGC
* **
18901317 TGTCTTGGCT-T-T-CCTT---TT
1 TGTCTTGACTCTATGCCTTCCAGC
18901335 TGTCTTGACTCTATGCCTTCCAGC
1 TGTCTTGACTCTATGCCTTCCAGC
18901359 TGTCTTG
1 TGTCTTG
18901366 GTGAAGACTG
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
18 9 0.24
19 1 0.03
20 1 0.03
21 8 0.22
22 1 0.03
23 1 0.03
24 16 0.43
ACGTcount: A:0.08, C:0.29, G:0.18, T:0.45
Consensus pattern (24 bp):
TGTCTTGACTCTATGCCTTCCAGC
Found at i:18901342 original size:42 final size:42
Alignment explanation
Indices: 18901278--18901366 Score: 169
Period size: 42 Copynumber: 2.1 Consensus size: 42
18901268 TCATTCCTGG
*
18901278 CTTGTCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
1 CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
18901320 CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
1 CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
18901362 CTTGG
1 CTTGG
18901367 TGAAGACTGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.07, C:0.28, G:0.17, T:0.48
Consensus pattern (42 bp):
CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
Found at i:18963866 original size:13 final size:13
Alignment explanation
Indices: 18963812--18963856 Score: 72
Period size: 13 Copynumber: 3.5 Consensus size: 13
18963802 GTAGTTTTTG
* *
18963812 AAAAAAAAACTCG
1 AAAAAAAAATTCA
18963825 AAAAAAAAATTCA
1 AAAAAAAAATTCA
18963838 AAAAAAAAATTCA
1 AAAAAAAAATTCA
18963851 AAAAAA
1 AAAAAA
18963857 TCAAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.78, C:0.09, G:0.02, T:0.11
Consensus pattern (13 bp):
AAAAAAAAATTCA
Found at i:18963944 original size:13 final size:14
Alignment explanation
Indices: 18963916--18963944 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
18963906 GAACACAACC
18963916 AAATTCGTGAAAAA
1 AAATTCGTGAAAAA
18963930 AAATTCGTGAAAAA
1 AAATTCGTGAAAAA
18963944 A
1 A
18963945 GAAGAAGCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.59, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
AAATTCGTGAAAAA
Found at i:18972749 original size:24 final size:24
Alignment explanation
Indices: 18972722--18972794 Score: 77
Period size: 24 Copynumber: 3.3 Consensus size: 24
18972712 CTTTCCTTTT
18972722 TGTCTTGACTCTATGCCTTCCAGC
1 TGTCTTGACTCTATGCCTTCCAGC
* **
18972746 TGTCTTGGCT-T-T-CCTT---TT
1 TGTCTTGACTCTATGCCTTCCAGC
18972764 TGTCTTGACTCTATGCCTTCCAGC
1 TGTCTTGACTCTATGCCTTCCAGC
18972788 TGTCTTG
1 TGTCTTG
18972795 GTGAAGACTG
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
18 9 0.24
19 1 0.03
20 1 0.03
21 8 0.22
22 1 0.03
23 1 0.03
24 16 0.43
ACGTcount: A:0.08, C:0.29, G:0.18, T:0.45
Consensus pattern (24 bp):
TGTCTTGACTCTATGCCTTCCAGC
Found at i:18972766 original size:42 final size:42
Alignment explanation
Indices: 18972707--18972795 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
18972697 TCATTCCTGG
18972707 CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
1 CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
18972749 CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
1 CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
18972791 CTTGG
1 CTTGG
18972796 TGAAGACTGT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.07, C:0.28, G:0.18, T:0.47
Consensus pattern (42 bp):
CTTGGCTTTCCTTTTTGTCTTGACTCTATGCCTTCCAGCTGT
Found at i:18979142 original size:50 final size:50
Alignment explanation
Indices: 18979086--18979342 Score: 277
Period size: 50 Copynumber: 5.2 Consensus size: 50
18979076 TATCCTAAAT
* ** * * * * *
18979086 ATGGTCTTACATGAGAGTTCTCATATCAGTGCCCATGCCATATCCTAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
**** * *
18979136 ATGGTCTTGTGGGGGACCTCTCATCCCGGTGCCAATGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
* *
18979186 ACGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
*
18979236 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
* * * * * *
18979286 ATGGTCTTACACT-GG--TTCACATATCGATGTCGATGCCATGTCCCAGAC
1 ATGGTCTTACA-TGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
18979334 ATGGTCTTA
1 ATGGTCTTA
18979343 TACGAGATCG
Statistics
Matches: 176, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
48 35 0.20
50 140 0.80
51 1 0.01
ACGTcount: A:0.21, C:0.30, G:0.22, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAATGCCATGTCCCAGAC
Found at i:18980426 original size:21 final size:22
Alignment explanation
Indices: 18980393--18980433 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
18980383 CAATTTCTCA
* *
18980393 ATCTAATATATATATTTCAATC
1 ATCTAAGATATATAATTCAATC
18980415 ATCTAAGA-ATATAATTCAA
1 ATCTAAGATATATAATTCAA
18980434 GTTACATGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.39
Consensus pattern (22 bp):
ATCTAAGATATATAATTCAATC
Found at i:18982752 original size:43 final size:44
Alignment explanation
Indices: 18982544--18982777 Score: 223
Period size: 43 Copynumber: 5.4 Consensus size: 44
18982534 CTAAGATAAC
*
18982544 TGTATTGGAATCACCATTCATTTGCATTTGCAAAATCTTAGTAT
1 TGTATTGGAATCACTATTCATTTGCATTTGCAAAATCTTAGTAT
* * * * *
18982588 CGTATT-GAA--ATTA-TCA-TT-CCTTTGCAACATTTTAGTAT
1 TGTATTGGAATCACTATTCATTTGCATTTGCAAAATCTTAGTAT
* * * *
18982626 TGTATTGGAATCATTATGGT-AATTGTATTGGTTGGAAAATCTTAGTAT
1 TGTATTGGAATCACTAT--TCATTTGCA-T--TTGCAAAATCTTAGTAT
* *
18982674 TGTAATGGAATCACCATTCATTTGCATTTGCAAAATCTTAGTAT
1 TGTATTGGAATCACTATTCATTTGCATTTGCAAAATCTTAGTAT
* * *
18982718 TGTATTGGAAT-ACTATTCATTTGTATTTGTAAAATCTTAGTAC
1 TGTATTGGAATCACTATTCATTTGCATTTGCAAAATCTTAGTAT
*
18982761 TGTATCGGAATCACTAT
1 TGTATTGGAATCACTAT
18982778 GGTAATTGCA
Statistics
Matches: 153, Mismatches: 24, Indels: 26
0.75 0.12 0.13
Matches are distributed among these distances:
38 22 0.14
39 5 0.03
40 3 0.02
41 6 0.04
43 42 0.27
44 39 0.25
46 3 0.02
47 5 0.03
48 28 0.18
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (44 bp):
TGTATTGGAATCACTATTCATTTGCATTTGCAAAATCTTAGTAT
Found at i:18982773 original size:87 final size:90
Alignment explanation
Indices: 18982608--18982774 Score: 209
Period size: 92 Copynumber: 1.9 Consensus size: 90
18982598 TTATCATTCC
* * *
18982608 TTTGCAACATTTTAGTATTGTATTGGAATCATTATGGTAATTGTATTGGTTGGAAAATCTTAGTA
1 TTTGCAAAATCTTAGTATTGTATTGGAATCACTAT-GTAATTGTATT-GTTGGAAAATCTTAGTA
*
18982673 TTGTAATGGAATCACCATTCATTTGCA
64 CTGTAATGGAATCACCATTCATTTGCA
* *
18982700 TTTGCAAAATCTTAGTATTGTATTGGAAT-ACTAT-TCATTTGTA-T-TTGTAAAATCTTAGTAC
1 TTTGCAAAATCTTAGTATTGTATTGGAATCACTATGT-AATTGTATTGTTGGAAAATCTTAGTAC
18982761 TGT-ATCGGAATCAC
65 TGTAAT-GGAATCAC
18982775 TATGGTAATT
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
86 2 0.03
87 26 0.39
89 2 0.03
90 6 0.09
91 4 0.06
92 27 0.40
ACGTcount: A:0.30, C:0.11, G:0.17, T:0.43
Consensus pattern (90 bp):
TTTGCAAAATCTTAGTATTGTATTGGAATCACTATGTAATTGTATTGTTGGAAAATCTTAGTACT
GTAATGGAATCACCATTCATTTGCA
Found at i:18994725 original size:17 final size:17
Alignment explanation
Indices: 18994703--18994738 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
18994693 GAAGGCGTGG
18994703 CCATGCGCAGGACACGA
1 CCATGCGCAGGACACGA
18994720 CCATGCGCAGGACACGA
1 CCATGCGCAGGACACGA
18994737 CC
1 CC
18994739 GTGTGACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.39, G:0.28, T:0.06
Consensus pattern (17 bp):
CCATGCGCAGGACACGA
Found at i:18997606 original size:12 final size:12
Alignment explanation
Indices: 18997589--18997613 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
18997579 CCAAATCATC
18997589 TGTACGTACGAT
1 TGTACGTACGAT
18997601 TGTACGTACGAT
1 TGTACGTACGAT
18997613 T
1 T
18997614 CGCATCGATA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (12 bp):
TGTACGTACGAT
Found at i:19001562 original size:46 final size:46
Alignment explanation
Indices: 19001492--19001668 Score: 266
Period size: 46 Copynumber: 3.8 Consensus size: 46
19001482 ACAATGCTAT
* *
19001492 AACTCAGTATGGTTTTCTTCACTGAAGTACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTTACTGAAATACCATACCTACTTTTCAC
* * * *
19001538 AACTCAGTATGGTTTCCGTTACTGAAATACCATACCTAATTCTCAC
1 AACTCAGTATGGTTTTCTTTACTGAAATACCATACCTACTTTTCAC
* *
19001584 AACTCAGTACGGTTTTCTTTTCTGAAATACCATACCT-CATTTTCAC
1 AACTCAGTATGGTTTTCTTTACTGAAATACCATACCTAC-TTTTCAC
19001630 AACTCAGTATGGTTTTCTTTACTGAAATACCATACCTAC
1 AACTCAGTATGGTTTTCTTTACTGAAATACCATACCTAC
19001669 GTTCGACACT
Statistics
Matches: 115, Mismatches: 14, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
46 114 0.99
47 1 0.01
ACGTcount: A:0.28, C:0.25, G:0.10, T:0.36
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTTACTGAAATACCATACCTACTTTTCAC
Found at i:19002411 original size:17 final size:18
Alignment explanation
Indices: 19002365--19002418 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
19002355 TTTACCTATT
*
19002365 AAATTCTTTCTAAATCACA
1 AAATTC-TTCTAATTCACA
*
19002384 AAATTC-ACTAATTCA-A
1 AAATTCTTCTAATTCACA
19002400 AAATTCTTCTAAATTCACA
1 AAATTCTTCT-AATTCACA
19002419 CTTGACCCAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 7 0.24
17 9 0.31
18 6 0.21
19 7 0.24
ACGTcount: A:0.44, C:0.20, G:0.00, T:0.35
Consensus pattern (18 bp):
AAATTCTTCTAATTCACA
Found at i:19008493 original size:34 final size:36
Alignment explanation
Indices: 19008440--19008506 Score: 95
Period size: 35 Copynumber: 1.9 Consensus size: 36
19008430 TAACAGAATT
19008440 GATACATAACAACCATACC-ATTTTGGCCATTTAAA
1 GATACATAACAACCATACCAATTTTGGCCATTTAAA
*
19008475 GATACATTAAC-A-CATACCAATTTTGGTCATTT
1 GATACA-TAACAACCATACCAATTTTGGCCATTT
19008507 CAAAACATAC
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
34 6 0.21
35 19 0.66
36 4 0.14
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (36 bp):
GATACATAACAACCATACCAATTTTGGCCATTTAAA
Found at i:19014944 original size:56 final size:55
Alignment explanation
Indices: 19014877--19015175 Score: 394
Period size: 56 Copynumber: 5.8 Consensus size: 55
19014867 TATTAGTTTA
*
19014877 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCA-GACATGTT
19014933 TTGCCCATGCTTCTTA-TTTATTTTTCCATT-----AACA-----CA-ACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCAGACATGTT
19014976 TTGCCCATGCTTCTTATTTTA-TTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCA-GACATGTT
19015031 TTGCCCATGCTTCTTATTTTATTTTTCCATT-----AACA-----CA-ACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCAGACATGTT
19015075 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCAAGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTC-AGACATGTT
19015131 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTT
19015176 TGCCCATCAT
Statistics
Matches: 216, Mismatches: 1, Indels: 52
0.80 0.00 0.19
Matches are distributed among these distances:
43 32 0.15
44 42 0.19
45 2 0.01
46 2 0.01
48 4 0.02
49 4 0.02
50 4 0.02
51 4 0.02
53 2 0.01
54 1 0.00
55 42 0.19
56 77 0.36
ACGTcount: A:0.23, C:0.22, G:0.08, T:0.46
Consensus pattern (55 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCAGACATGTT
Found at i:19015087 original size:44 final size:44
Alignment explanation
Indices: 19014926--19015182 Score: 284
Period size: 44 Copynumber: 5.3 Consensus size: 44
19014916 ATGTTTCATG
19014926 ACATGTTTTGCCCATGCTTCTTA-TTTATTTTTCCATTAACACA
1 ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
19014969 ACATGTTTTGCCCATGCTTCTTATTTTA-TTTTCCATTAACACAACATGTTTCA
1 ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATT-----AACA-----CA
19015022 TGACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
1 --ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
19015068 ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCAA
1 ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATT-----AACA-----C-A
19015123 GACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
1 -ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
19015168 ACATGTTTTGCCCAT
1 ACATGTTTTGCCCAT
19015183 CATCCCTTGT
Statistics
Matches: 188, Mismatches: 0, Indels: 51
0.79 0.00 0.21
Matches are distributed among these distances:
43 32 0.17
44 57 0.30
45 1 0.01
46 3 0.02
48 4 0.02
49 4 0.02
51 8 0.04
53 2 0.01
54 1 0.01
55 29 0.15
56 47 0.25
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (44 bp):
ACATGTTTTGCCCATGCTTCTTATTTTATTTTTCCATTAACACA
Found at i:19015149 original size:100 final size:100
Alignment explanation
Indices: 19014877--19015182 Score: 580
Period size: 100 Copynumber: 3.1 Consensus size: 100
19014867 TATTAGTTTA
*
19014877 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
19014942 CTTCTTA-TTTATTTTTCCATTAACACAACATGTT
66 CTTCTTATTTTATTTTTCCATTAACACAACATGTT
19014976 TTGCCCATGCTTCTTATTTTA-TTTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
19015040 CTTCTTATTTTATTTTTCCATTAACACAACATGTT
66 CTTCTTATTTTATTTTTCCATTAACACAACATGTT
*
19015075 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCAAGACATGTTTTGCCCATG
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
19015140 CTTCTTATTTTATTTTTCCATTAACACAACATGTT
66 CTTCTTATTTTATTTTTCCATTAACACAACATGTT
19015175 TTGCCCAT
1 TTGCCCAT
19015183 CATCCCTTGT
Statistics
Matches: 203, Mismatches: 2, Indels: 3
0.98 0.01 0.01
Matches are distributed among these distances:
98 49 0.24
99 69 0.34
100 85 0.42
ACGTcount: A:0.23, C:0.23, G:0.08, T:0.46
Consensus pattern (100 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTTTTGCCCATG
CTTCTTATTTTATTTTTCCATTAACACAACATGTT
Found at i:19016404 original size:40 final size:40
Alignment explanation
Indices: 19016372--19016627 Score: 318
Period size: 40 Copynumber: 6.4 Consensus size: 40
19016362 CCAGCATGAT
* * * *
19016372 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
** ** *
19016412 TGCTCTTCGGGGTTTAGCATGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
19016452 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
19016492 TGCTCTTCGGGACTTAGCCCGGATACATCACTATCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
19016532 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
19016572 TGCTCTTCGGGACTTAGCCC-GATTATAGTAACTCGCACAAA
1 TGCTCTTCGGGACTTAGCCCGGA-TACA-TCACTAGCACGAA
19016613 TGC-CTTCGGGACTTA
1 TGCTCTTCGGGACTTA
19016628 ACCCAGATTT
Statistics
Matches: 188, Mismatches: 26, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
39 2 0.01
40 174 0.93
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Done.