Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 69 of 173
Found at i:20963599 original size:54 final size:57
Alignment explanation
Indices: 20963485--20963600 Score: 130
Period size: 54 Copynumber: 2.1 Consensus size: 57
20963475 TGGTTTTCTC
* * *** * **
20963485 CAAAATGAAAATGAAGATGGAGAAAATGGAATCATTTGGAAATGAATGTGGTTTTCT
1 CAAAATGAAAATAAAAATGGAGAAAATGGAATCATTTGGAAATGAAAAAGGATTAAT
*
20963542 CAAAATGAAAATAAAAAT-GAG-AAAT-GATTCATTTGGAAATGAAAAAGGATTAAT
1 CAAAATGAAAATAAAAATGGAGAAAATGGAATCATTTGGAAATGAAAAAGGATTAAT
20963596 CAAAA
1 CAAAA
20963601 ATGATCTAAA
Statistics
Matches: 50, Mismatches: 9, Indels: 3
0.81 0.15 0.05
Matches are distributed among these distances:
54 27 0.54
55 4 0.08
56 3 0.06
57 16 0.32
ACGTcount: A:0.50, C:0.05, G:0.20, T:0.25
Consensus pattern (57 bp):
CAAAATGAAAATAAAAATGGAGAAAATGGAATCATTTGGAAATGAAAAAGGATTAAT
Found at i:20968313 original size:25 final size:26
Alignment explanation
Indices: 20968285--20968333 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20968275 GTAAATGAAG
*
20968285 TTATAAGCATA-GTGTTTGTTTGAGT
1 TTATAAACATATGTGTTTGTTTGAGT
*
20968310 TTATAAACATATGTTTTTGTTTGA
1 TTATAAACATATGTGTTTGTTTGA
20968334 AGCCTAAACT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.27, C:0.04, G:0.18, T:0.51
Consensus pattern (26 bp):
TTATAAACATATGTGTTTGTTTGAGT
Found at i:20968810 original size:9 final size:10
Alignment explanation
Indices: 20968785--20968811 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
20968775 CCCTTCATAG
20968785 AATTTTTCTA
1 AATTTTTCTA
20968795 AATTTTTCTA
1 AATTTTTCTA
20968805 AATTTTT
1 AATTTTT
20968812 TCAAATGTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (10 bp):
AATTTTTCTA
Found at i:20972270 original size:47 final size:47
Alignment explanation
Indices: 20972201--20972294 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
20972191 ATTGTGATTG
20972201 CTTGAGGTTTCACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
1 CTTGAGGTTTCACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
*
20972248 CTTGAGGTTTGACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
1 CTTGAGGTTTCACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
20972295 AATAGTTGAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.26, C:0.14, G:0.20, T:0.40
Consensus pattern (47 bp):
CTTGAGGTTTCACAACTGAATCTGTGTTCTGAATGTTTCAGAATTTA
Found at i:20974407 original size:20 final size:20
Alignment explanation
Indices: 20974382--20974419 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
20974372 GTGAAATTTG
20974382 TATGAA-AATATAAAATTAAT
1 TATGAAGAATA-AAAATTAAT
20974402 TATGAAGAATAAAAATTA
1 TATGAAGAATAAAAATTA
20974420 GTCTCGGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.61, C:0.00, G:0.08, T:0.32
Consensus pattern (20 bp):
TATGAAGAATAAAAATTAAT
Found at i:20994387 original size:9 final size:9
Alignment explanation
Indices: 20994373--20994402 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
20994363 ATTAAAATAT
20994373 TAATTAAAC
1 TAATTAAAC
*
20994382 TAATTAAAT
1 TAATTAAAC
20994391 TAATTAAAC
1 TAATTAAAC
20994400 TAA
1 TAA
20994403 AATAACCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (9 bp):
TAATTAAAC
Found at i:20994431 original size:29 final size:29
Alignment explanation
Indices: 20994390--20994445 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
20994380 ACTAATTAAA
*
20994390 TTAATTAAACTAAAATAACCTAATGGATT
1 TTAACTAAACTAAAATAACCTAATGGATT
* * *
20994419 TTAACTAACCTAAGATATCCTAATGGA
1 TTAACTAAACTAAAATAACCTAATGGA
20994446 ATTTCCTATT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (29 bp):
TTAACTAAACTAAAATAACCTAATGGATT
Found at i:20996658 original size:50 final size:50
Alignment explanation
Indices: 20996550--20996726 Score: 176
Period size: 50 Copynumber: 3.4 Consensus size: 50
20996540 ATTTGGGTAA
* * *
20996550 AGAGATCCCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATTATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
*
20996606 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** * * *
20996656 AGAGGTCCCCCGTAAGACCGTATCTGGGACATGGCATGGGCACCGATG-TG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GATG
** *
20996706 AGAACTCCCTTGTAAGACCAT
1 AGAGGTCCCATGTAAGACCAT
20996727 ATTTGGGATG
Statistics
Matches: 105, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
50 61 0.58
51 1 0.01
53 3 0.03
55 1 0.01
56 39 0.37
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:21001329 original size:50 final size:50
Alignment explanation
Indices: 21001228--21001467 Score: 205
Period size: 50 Copynumber: 4.7 Consensus size: 50
21001218 TAAAGAGATG
* * *
21001228 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATTATGAGAGGTC
1 CCATGTAAGACCATGTCCGGGACATGGCATTGGCA-C--CGAG---ATGAGAGGTC
* ** *
21001284 CCATGTAAAACTGTGTCCGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCCGGGACATGGCATTGGCACCGAGATGAGAGGTC
* * * * **
21001334 CCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTC
1 CCATGTAAGACCATGTCCGGGACATGGCATTGGCACCGAGATGAGAGGTC
* * * * * **
21001384 CCATGTAAGACCATATCCGGGATATGGCATTGGCA--GTACAAGAAACATC
1 CCATGTAAGACCATGTCCGGGACATGGCATTGGCACCG-AGATGAGAGGTC
* *
21001433 CCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CCATGTAAGACCATGTCCGGGACATGGCATTGGCA
21001468 TGTTATTATC
Statistics
Matches: 152, Mismatches: 31, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
48 1 0.01
49 38 0.25
50 80 0.53
53 3 0.02
55 1 0.01
56 29 0.19
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
CCATGTAAGACCATGTCCGGGACATGGCATTGGCACCGAGATGAGAGGTC
Found at i:21001386 original size:100 final size:102
Alignment explanation
Indices: 21001228--21001460 Score: 240
Period size: 100 Copynumber: 2.3 Consensus size: 102
21001218 TAAAGAGATG
* * **
21001228 CCATGTAAGACCATGTCTGGGACATGACATTGGCATCATTGAGATTATGAGAGGTCCCATGTAAA
1 CCATGTAAGACCATGTCTGGGACATGGCATGGGCATC--T-AGATTATGAGAACTCCCATGTAAA
** * * * * * **
21001293 ACTGTGTCCGGGACATGGCGTTGGCACCG-AGATGAGAGGTC
63 ACCATATCCGGGACATGGCATTGGCA--GTACAAGAAACATC
* * *
21001334 CCCTGTAAGACCATGTCTGGGACATGGCATGGGCA-C-CGA-TATGAGAACTCCCATGTAAGACC
1 CCATGTAAGACCATGTCTGGGACATGGCATGGGCATCTAGATTATGAGAACTCCCATGTAAAACC
*
21001396 ATATCCGGGATATGGCATTGGCAGTACAAGAAACATC
66 ATATCCGGGACATGGCATTGGCAGTACAAGAAACATC
21001433 CCATGTAAGACCATGTCTGGGACATGGC
1 CCATGTAAGACCATGTCTGGGACATGGC
21001461 TTTGGCATGT
Statistics
Matches: 108, Mismatches: 18, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
98 1 0.01
99 34 0.31
100 38 0.35
101 2 0.02
105 1 0.01
106 32 0.30
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (102 bp):
CCATGTAAGACCATGTCTGGGACATGGCATGGGCATCTAGATTATGAGAACTCCCATGTAAAACC
ATATCCGGGACATGGCATTGGCAGTACAAGAAACATC
Found at i:21007272 original size:50 final size:50
Alignment explanation
Indices: 21007205--21007440 Score: 244
Period size: 50 Copynumber: 4.7 Consensus size: 50
21007195 GTGAATGAGA
* *
21007205 TCCCATGTAAAACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
* * * * *
21007255 TCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCAGCAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
** * * * *
21007305 TCCCCCGTAAGACCAAGTCTAGGACATGGCA-TGAGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTG-GCACCGAGATGAGAAG
* * * * * * *
21007355 TCCCATGTAAGACCATATCTGGGATATGGCATTGG-A-AGTACAAGAAAAA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAAG
*
21007404 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
21007441 TGTTATTATC
Statistics
Matches: 152, Mismatches: 30, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
48 1 0.01
49 41 0.27
50 108 0.71
51 2 0.01
ACGTcount: A:0.30, C:0.22, G:0.28, T:0.21
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAAG
Found at i:21016736 original size:29 final size:29
Alignment explanation
Indices: 21016704--21016762 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 29
21016694 CAAAAGCTAC
*
21016704 ATGAATG-CATGAAACAGATGAAAATCAAA
1 ATGAATGACATGAAA-AGATAAAAATCAAA
*
21016733 ATGAATGATCATGAAAATATAAAAATCAAA
1 ATGAATGA-CATGAAAAGATAAAAATCAAA
21016763 GTTTGGAGGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 7 0.27
30 12 0.46
31 7 0.27
ACGTcount: A:0.58, C:0.08, G:0.14, T:0.20
Consensus pattern (29 bp):
ATGAATGACATGAAAAGATAAAAATCAAA
Found at i:21024150 original size:46 final size:46
Alignment explanation
Indices: 21024097--21024189 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
21024087 GGAAGTCATA
21024097 TTCAGGATGGAAACAGAAGATGCCCCTACCCATGCTTTTCGACAAC
1 TTCAGGATGGAAACAGAAGATGCCCCTACCCATGCTTTTCGACAAC
21024143 TTCAGGATGGAAACAGAAGATGCCCCTACCCATGCTTTTCGACAAC
1 TTCAGGATGGAAACAGAAGATGCCCCTACCCATGCTTTTCGACAAC
21024189 T
1 T
21024190 GTTGATATGG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (46 bp):
TTCAGGATGGAAACAGAAGATGCCCCTACCCATGCTTTTCGACAAC
Found at i:21035171 original size:50 final size:51
Alignment explanation
Indices: 21035055--21035177 Score: 142
Period size: 50 Copynumber: 2.4 Consensus size: 51
21035045 CTTAGATATT
* ** * *
21035055 GTCTTACATGGGAGTTCTCATATTGGTGCCCATGCAATTGTCCCAGACATG
1 GTCTTACAGGGGACCTCTCATATCGGTGCCAATGCAATTGTCCCAGACATG
* * *
21035106 GTCTTACAGGGGACCTCTCATCTCGGTGCCAATGCCA-TGTCCTAGACATG
1 GTCTTACAGGGGACCTCTCATATCGGTGCCAATGCAATTGTCCCAGACATG
*
21035156 GTCTTAC-GTGTGACCTCTCATA
1 GTCTTACAG-GGGACCTCTCATA
21035178 ACCTCAATAA
Statistics
Matches: 61, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
49 1 0.02
50 30 0.49
51 30 0.49
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.30
Consensus pattern (51 bp):
GTCTTACAGGGGACCTCTCATATCGGTGCCAATGCAATTGTCCCAGACATG
Found at i:21037265 original size:29 final size:27
Alignment explanation
Indices: 21037247--21037316 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
21037237 ATATTAAGTC
21037247 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
21037274 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
21037302 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
21037317 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:21037310 original size:28 final size:28
Alignment explanation
Indices: 21037247--21037344 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
21037237 ATATTAAGTC
*
21037247 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
21037274 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
21037302 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
21037331 CGCACACTTAGTGC
1 CGCACACTTAGTGC
21037345 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:21045333 original size:29 final size:27
Alignment explanation
Indices: 21045315--21045384 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
21045305 ATATTAAGTC
21045315 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
21045342 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
21045370 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
21045385 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:21045378 original size:28 final size:28
Alignment explanation
Indices: 21045315--21045412 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
21045305 ATATTAAGTC
*
21045315 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
21045342 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
21045370 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
21045399 CGCACACTTAGTGC
1 CGCACACTTAGTGC
21045413 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:21053774 original size:20 final size:20
Alignment explanation
Indices: 21053739--21053787 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
21053729 ATCATAGTCT
*
21053739 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
21053758 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
21053778 TTGCTTACTT
1 TTGCTTACTT
21053788 ATATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:21054170 original size:50 final size:50
Alignment explanation
Indices: 21053990--21054184 Score: 196
Period size: 50 Copynumber: 3.9 Consensus size: 50
21053980 GATAATAACA
* * ** * * *
21053990 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATAT-CGG
** * * * **
21054039 TTTCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
* * *
21054089 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
* *
21054139 TGCCAATGCCATGTCCTAGACATGGTCTTACGTGTGACCTCTCATA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATA
21054185 ACCTTAATAA
Statistics
Matches: 119, Mismatches: 25, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
48 1 0.01
49 37 0.31
50 81 0.68
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.30
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGACCTCTCATATCGG
Found at i:21054964 original size:10 final size:11
Alignment explanation
Indices: 21054941--21054965 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
21054931 CGAGGACTCC
21054941 AAAAACATTAA
1 AAAAACATTAA
21054952 AAAAACATTAA
1 AAAAACATTAA
21054963 AAA
1 AAA
21054966 CGGGGCTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.76, C:0.08, G:0.00, T:0.16
Consensus pattern (11 bp):
AAAAACATTAA
Found at i:21060912 original size:21 final size:21
Alignment explanation
Indices: 21060888--21060956 Score: 72
Period size: 21 Copynumber: 3.4 Consensus size: 21
21060878 TTATTTTCAG
21060888 CAACTTCTTCTTCTTCAGCAA
1 CAACTTCTTCTTCTTCAGCAA
*
21060909 CAACTTCCTCTTC-T-A-CAA
1 CAACTTCTTCTTCTTCAGCAA
* * * *
21060927 AAACTTCTACTTCTGCAGCAT
1 CAACTTCTTCTTCTTCAGCAA
21060948 CAACTTCTT
1 CAACTTCTT
21060957 TCTCAATAAC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
18 13 0.35
19 1 0.03
20 2 0.05
21 21 0.57
ACGTcount: A:0.26, C:0.33, G:0.04, T:0.36
Consensus pattern (21 bp):
CAACTTCTTCTTCTTCAGCAA
Found at i:21060915 original size:18 final size:18
Alignment explanation
Indices: 21060883--21060939 Score: 53
Period size: 18 Copynumber: 3.2 Consensus size: 18
21060873 CTTTTTTATT
**
21060883 TTCAGCAACTTCTTCTTC
1 TTCAGCAACAACTTCTTC
*
21060901 TTCAGCAACAACTTCCTC
1 TTCAGCAACAACTTCTTC
* *
21060919 TTCTA-CAAAAACTTCTAC
1 TTC-AGCAACAACTTCTTC
21060937 TTC
1 TTC
21060940 TGCAGCATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
18 31 0.97
19 1 0.03
ACGTcount: A:0.26, C:0.33, G:0.04, T:0.37
Consensus pattern (18 bp):
TTCAGCAACAACTTCTTC
Found at i:21069454 original size:55 final size:55
Alignment explanation
Indices: 21069387--21069495 Score: 155
Period size: 55 Copynumber: 2.0 Consensus size: 55
21069377 GTTCTTATCC
**
21069387 AGACAGCTGTCAAGTGTGACGACAATTCTGAACGCAATCTGGAATTAACACATGT
1 AGACAGCTGTCAAGTGTGACGACAATTCTGAACGCAATCTAAAATTAACACATGT
* * * * *
21069442 AGACATCTGTCAAGTGTGGCGACAATTCTGGATGCAATCTAAAATTAACTCATG
1 AGACAGCTGTCAAGTGTGACGACAATTCTGAACGCAATCTAAAATTAACACATG
21069496 CAACGACATT
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (55 bp):
AGACAGCTGTCAAGTGTGACGACAATTCTGAACGCAATCTAAAATTAACACATGT
Found at i:21070561 original size:19 final size:19
Alignment explanation
Indices: 21070539--21070576 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
21070529 TCAATCATCC
21070539 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
21070558 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
21070577 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:21076427 original size:19 final size:19
Alignment explanation
Indices: 21076405--21076442 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
21076395 TCAATCATCC
21076405 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
21076424 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
21076443 ACTCTTTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:21080538 original size:27 final size:27
Alignment explanation
Indices: 21080486--21080540 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
21080476 TTGTATAAGT
*
21080486 AGCCCAAATATCACAACTTGTATGAGC
1 AGCCCAAATATCACAACTTCTATGAGC
* * *
21080513 AGCCCAAATATCATAGCTTCTGTGAGC
1 AGCCCAAATATCACAACTTCTATGAGC
21080540 A
1 A
21080541 AATCGAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.35, C:0.25, G:0.16, T:0.24
Consensus pattern (27 bp):
AGCCCAAATATCACAACTTCTATGAGC
Found at i:21086647 original size:11 final size:11
Alignment explanation
Indices: 21086633--21086673 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
21086623 ACCACCACTT
21086633 CACCACCATAA
1 CACCACCATAA
*
21086644 CACCACCATAC
1 CACCACCATAA
21086655 CACCACCATAA
1 CACCACCATAA
21086666 CACCACCA
1 CACCACCA
21086674 CCATAGCACA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.41, C:0.51, G:0.00, T:0.07
Consensus pattern (11 bp):
CACCACCATAA
Found at i:21086650 original size:22 final size:23
Alignment explanation
Indices: 21086623--21086674 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
21086613 ATTCGATATT
*
21086623 ACCACCACT-TCACCACCATAAC
1 ACCACCACTACCACCACCATAAC
21086645 ACCACCA-TACCACCACCATAAC
1 ACCACCACTACCACCACCATAAC
21086667 ACCACCAC
1 ACCACCAC
21086675 CATAGCACAA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 1 0.04
22 26 0.96
ACGTcount: A:0.38, C:0.52, G:0.00, T:0.10
Consensus pattern (23 bp):
ACCACCACTACCACCACCATAAC
Found at i:21086674 original size:25 final size:25
Alignment explanation
Indices: 21086633--21086697 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
21086623 ACCACCACTT
21086633 CACCACCAT-A-A-CACCACCATAC
1 CACCACCATAACACCACCACCATAC
*
21086655 CACCACCATAACACCACCACCATAG
1 CACCACCATAACACCACCACCATAC
* * *
21086680 CACAACCGTACCACCACC
1 CACCACCATAACACCACC
21086698 TTTGCACCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 9 0.25
23 1 0.03
24 1 0.03
25 25 0.69
ACGTcount: A:0.38, C:0.51, G:0.03, T:0.08
Consensus pattern (25 bp):
CACCACCATAACACCACCACCATAC
Found at i:21090929 original size:14 final size:14
Alignment explanation
Indices: 21090906--21090952 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
21090896 AAGTATTTTT
21090906 TTAAGCTTAATTAA
1 TTAAGCTTAATTAA
*
21090920 TTAAGTTTAATTAAA
1 TTAAGCTTAATT-AA
* *
21090935 TTAAACATAATTAA
1 TTAAGCTTAATTAA
21090949 TTAA
1 TTAA
21090953 CTAAAACATC
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (14 bp):
TTAAGCTTAATTAA
Found at i:21096923 original size:3 final size:3
Alignment explanation
Indices: 21096910--21096971 Score: 83
Period size: 3 Copynumber: 21.3 Consensus size: 3
21096900 GGAAATTTTC
* *
21096910 TCT TAT TCT TCT TCT TCT TCT TTT TCT TCT TCT TCT TCT TCT T-T TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
*
21096957 TCT TC- TCT GCT TCT T
1 TCT TCT TCT TCT TCT T
21096972 TTTTTATTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
2 4 0.08
3 47 0.92
ACGTcount: A:0.02, C:0.29, G:0.02, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:21102396 original size:41 final size:43
Alignment explanation
Indices: 21102347--21102454 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
21102337 AACCGTTACT
* * *
21102347 CGGTGGAATCAGCAGTTAGCAACCAAC-TT-ATATTC-AGTGATA
1 CGGTGGAATCAGCACTTAGCAACC-ACTTTCACAATCAAG-GATA
* *
21102389 CGG-GGAATCAGCACATAGCAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCACTTTCACAATCAAGGATA
21102431 CGGTGGAATCAGCACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACC
21102455 CCTCGAGGAA
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
40 1 0.02
41 20 0.36
42 14 0.25
43 21 0.38
ACGTcount: A:0.33, C:0.25, G:0.21, T:0.20
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACTTTCACAATCAAGGATA
Found at i:21102518 original size:41 final size:41
Alignment explanation
Indices: 21102461--21102568 Score: 191
Period size: 40 Copynumber: 2.7 Consensus size: 41
21102451 AACCCCTCGA
*
21102461 GGAATCTGCACTTAGCAACCCCTTTTTGATTAGTGATTCAG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCAG
*
21102502 GGAATCTGCACTTAGCAACCCC-TTTTGATCAGTGATTCGG
1 GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCAG
21102542 GGAATCTGCACTTAGCAACCCCTTTTT
1 GGAATCTGCACTTAGCAACCCCTTTTT
21102569 TTTCAATAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
40 38 0.59
41 26 0.41
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.32
Consensus pattern (41 bp):
GGAATCTGCACTTAGCAACCCCTTTTTGATCAGTGATTCAG
Found at i:21103888 original size:23 final size:23
Alignment explanation
Indices: 21103818--21103892 Score: 107
Period size: 23 Copynumber: 3.3 Consensus size: 23
21103808 GCTAGATTTT
* *
21103818 TTCTAAATATTGTAATTAAATAA
1 TTCTAAATATTATCATTAAATAA
*
21103841 TCCTAAATATTATCATTAAATAA
1 TTCTAAATATTATCATTAAATAA
*
21103864 TTCTAAATATTATCACTAAATAA
1 TTCTAAATATTATCATTAAATAA
21103887 TT-TAAA
1 TTCTAAA
21103893 ATTTTAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
22 4 0.09
23 43 0.91
ACGTcount: A:0.48, C:0.09, G:0.01, T:0.41
Consensus pattern (23 bp):
TTCTAAATATTATCATTAAATAA
Found at i:21112552 original size:15 final size:15
Alignment explanation
Indices: 21112534--21112571 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
21112524 TCTTCTAAAG
21112534 AAATAAAATACTCAT
1 AAATAAAATACTCAT
*
21112549 AAATAAAAT-CTCCT
1 AAATAAAATACTCAT
21112563 -AATAAAATA
1 AAATAAAATA
21112572 ATAATAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 8 0.38
14 4 0.19
15 9 0.43
ACGTcount: A:0.61, C:0.13, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATAAAATACTCAT
Found at i:21115552 original size:16 final size:16
Alignment explanation
Indices: 21115531--21115579 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
21115521 CGCTGTATTG
21115531 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
* *
21115547 GAATAGAGGTGTAATG
1 GAATAGAGGCGTAATA
21115563 GAATAGAGGCGTAATA
1 GAATAGAGGCGTAATA
21115579 G
1 G
21115580 CAAATCAATT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 29 1.00
ACGTcount: A:0.41, C:0.04, G:0.35, T:0.20
Consensus pattern (16 bp):
GAATAGAGGCGTAATA
Found at i:21115850 original size:61 final size:59
Alignment explanation
Indices: 21115780--21115968 Score: 195
Period size: 61 Copynumber: 3.1 Consensus size: 59
21115770 ATTTAATAAA
21115780 AATATATAATTTAGTAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCAT
1 AATATATAATTTA-TAAAATT-TTAATATTAAATATTCTTATATGAATTTTCTAAAATCAT
* * * * * ** ** * *
21115841 AATATATAATACTATAAAA-TATAAT-TTAACATAATTATTAT-TAAATATAATTTAATAAA
1 AATATATAAT-TTATAAAATTTTAATATTAA-AT-ATTCTTATATGAATTTTCTAAAATCAT
21115900 AATATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTTCTAAAATCAT
1 AATATATAATTT-ATAAAA-TTTTAATATTAAATATTCTTATATGAATTTTCTAAAATCAT
21115961 AATATATA
1 AATATATA
21115969 TAATACTACA
Statistics
Matches: 98, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
58 5 0.05
59 32 0.33
60 15 0.15
61 40 0.41
62 6 0.06
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (59 bp):
AATATATAATTTATAAAATTTTAATATTAAATATTCTTATATGAATTTTCTAAAATCAT
Found at i:21115880 original size:120 final size:120
Alignment explanation
Indices: 21115745--21115968 Score: 430
Period size: 120 Copynumber: 1.9 Consensus size: 120
21115735 TTAATCATAT
*
21115745 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAGTAAAATTCTTAATATT
1 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
21115810 AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
66 AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
*
21115865 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTTTTAATATT
1 TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
21115930 AAATATTCTTATATGAATTTTCTAAAATCATAATATATA
66 AAATATTCTTATATGAATTTTCTAAAATCATAATATATA
21115969 TAATACTACA
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
120 102 1.00
ACGTcount: A:0.50, C:0.04, G:0.01, T:0.45
Consensus pattern (120 bp):
TTTAACATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATT
AAATATTCTTATATGAATTTTCTAAAATCATAATATATAATACTATAAAATATAA
Found at i:21115966 original size:59 final size:59
Alignment explanation
Indices: 21115783--21115966 Score: 182
Period size: 59 Copynumber: 3.1 Consensus size: 59
21115773 TAATAAAAAT
* *
21115783 ATATAATTTAGTAAAATTCTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATA
1 ATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATA
* * * * **
21115842 ATAT-ATAATACTATAAAATATAATTTAACA-TAATTATTATTAAATAT-AATTTAATAAAA--A
1 ATATAAT-TTA--ATAAAAT-T--TTTAATATTAAATATTCTT--ATATGAATTTTCTAAAATCA
21115902 T-
58 TA
21115903 ATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATA
1 ATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATA
21115962 ATATA
1 ATATA
21115967 TATAATACTA
Statistics
Matches: 97, Mismatches: 14, Indels: 28
0.70 0.10 0.20
Matches are distributed among these distances:
55 4 0.04
56 16 0.16
57 9 0.09
58 5 0.05
59 18 0.19
61 12 0.12
62 5 0.05
63 9 0.09
64 15 0.15
65 4 0.04
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.45
Consensus pattern (59 bp):
ATATAATTTAATAAAATTTTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATA
Found at i:21116094 original size:14 final size:15
Alignment explanation
Indices: 21116075--21116107 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
21116065 CTTTATTCTT
*
21116075 AAAATTCAAAAA-TA
1 AAAATTAAAAAACTA
21116089 AAAATTAAAAAACTA
1 AAAATTAAAAAACTA
21116104 AAAA
1 AAAA
21116108 ATTTAAACAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
AAAATTAAAAAACTA
Found at i:21116575 original size:58 final size:58
Alignment explanation
Indices: 21116452--21116590 Score: 197
Period size: 59 Copynumber: 2.4 Consensus size: 58
21116442 AAAGTTGCTA
* * *
21116452 TGTTTTGGCACTAAAAGCAACCGCAAGCCACAACTACCAGCATGTCAAGGATTAAATT
1 TGTTTTGGCACTAAAAGAAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
* * *
21116510 TGTTTTGGCACTAAAAGTAAACCACAAGTCACAAGAACCAGCATGTCAAGGATTGAATT
1 TGTTTTGGCACTAAAAG-AAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
* *
21116569 TGTTTGGGCACTAAAAGCAACC
1 TGTTTTGGCACTAAAAGAAACC
21116591 GCAATCGCAA
Statistics
Matches: 72, Mismatches: 8, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
58 21 0.29
59 51 0.71
ACGTcount: A:0.37, C:0.22, G:0.19, T:0.23
Consensus pattern (58 bp):
TGTTTTGGCACTAAAAGAAACCACAAGCCACAACAACCAGCATGTCAAGGATTAAATT
Found at i:21118936 original size:17 final size:18
Alignment explanation
Indices: 21118892--21118938 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 18
21118882 AATTTAGTTT
21118892 TAATATATATAATTGAATG
1 TAATATAT-TAATTGAATG
*
21118911 TAATTTATTCAATT-AA-G
1 TAATATATT-AATTGAATG
21118928 TAATATATTAA
1 TAATATATTAA
21118939 ATTTCCTAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
16 2 0.08
17 9 0.36
18 3 0.12
19 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (18 bp):
TAATATATTAATTGAATG
Found at i:21118941 original size:17 final size:19
Alignment explanation
Indices: 21118892--21118941 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 19
21118882 AATTTAGTTT
21118892 TAATATA-TATAATTGAATG
1 TAATATATTA-AATTGAATG
* *
21118911 TAATTTATTCAATT-AA-G
1 TAATATATTAAATTGAATG
21118928 TAATATATTAAATT
1 TAATATATTAAATT
21118942 TCCTAAATTA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 13 0.50
18 2 0.08
19 10 0.38
20 1 0.04
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (19 bp):
TAATATATTAAATTGAATG
Found at i:21120193 original size:10 final size:10
Alignment explanation
Indices: 21120168--21120203 Score: 54
Period size: 11 Copynumber: 3.4 Consensus size: 10
21120158 AATCGCGTCT
21120168 TTTTATTATTA
1 TTTT-TTATTA
21120179 TTTTTTATTCA
1 TTTTTTATT-A
21120190 TTTTTTATTA
1 TTTTTTATTA
21120200 TTTT
1 TTTT
21120204 ATTTTGTAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTTATTA
Found at i:21121392 original size:10 final size:10
Alignment explanation
Indices: 21121367--21121399 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
21121357 TTAACGCATA
21121367 TTTTATA-AT
1 TTTTATATAT
*
21121376 TTATATATAT
1 TTTTATATAT
21121386 TTTTATATAT
1 TTTTATATAT
21121396 TTTT
1 TTTT
21121400 CTTTATTGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 6 0.29
10 15 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (10 bp):
TTTTATATAT
Found at i:21127104 original size:21 final size:21
Alignment explanation
Indices: 21127080--21127120 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
21127070 TTGTGTATTT
*
21127080 ATCCAT-GTCATAGGTAAATTC
1 ATCCATAG-CATAAGTAAATTC
21127101 ATCCATAGCATAAGTAAATT
1 ATCCATAGCATAAGTAAATT
21127121 TCTCACATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 17 0.94
22 1 0.06
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.32
Consensus pattern (21 bp):
ATCCATAGCATAAGTAAATTC
Found at i:21135133 original size:23 final size:22
Alignment explanation
Indices: 21135080--21135129 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
21135070 AAACTGACTC
*
21135080 TTCAGATTTATCGTTTTACCCCT
1 TTCAAATTTATCGTTTTA-CCCT
*
21135103 TTCAAATTTATCGTTTT-GCCT
1 TTCAAATTTATCGTTTTACCCT
21135124 TTCAAA
1 TTCAAA
21135130 AATTCTTAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 9 0.36
23 16 0.64
ACGTcount: A:0.22, C:0.22, G:0.08, T:0.48
Consensus pattern (22 bp):
TTCAAATTTATCGTTTTACCCT
Found at i:21139861 original size:55 final size:55
Alignment explanation
Indices: 21139777--21139888 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
21139767 CCAGCATTAC
21139777 AAGAACCTACAGGGTCACACCCTATGGTTAAAGCGAACAAAATCATAATTTCAAT
1 AAGAACCTACAGGGTCACACCCTATGGTTAAAGCGAACAAAATCATAATTTCAAT
* *
21139832 AAGAACCTACAGGGTCGCACCCTATGGTTAAAGCGAACAATATCATAATTTCAAT
1 AAGAACCTACAGGGTCACACCCTATGGTTAAAGCGAACAAAATCATAATTTCAAT
21139887 AA
1 AA
21139889 TTTGATTACA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.22
Consensus pattern (55 bp):
AAGAACCTACAGGGTCACACCCTATGGTTAAAGCGAACAAAATCATAATTTCAAT
Found at i:21141252 original size:20 final size:20
Alignment explanation
Indices: 21141224--21141280 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
21141214 AATATTAAGA
* *
21141224 ACCACTCCATTTACTTTCTT
1 ACCATTCCATTTACTTACTT
21141244 ACCATTCCATTTACTTACTT
1 ACCATTCCATTTACTTACTT
* *
21141264 TCCATTTCATTTACTTA
1 ACCATTCCATTTACTTA
21141281 ACATAAACTT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.23, C:0.30, G:0.00, T:0.47
Consensus pattern (20 bp):
ACCATTCCATTTACTTACTT
Found at i:21141983 original size:40 final size:40
Alignment explanation
Indices: 21141930--21142224 Score: 380
Period size: 40 Copynumber: 7.4 Consensus size: 40
21141920 ATCGTCAGAT
*
21141930 CAACCG-AACACACCAGACAAAAGCTCATAAGAGCTAATC
1 CAACCGAAACACACCAGACAGAAGCTCATAAGAGCTAATC
21141969 CAACCGAAACACACCAGACAGAAGCTCATAAGAGCTAATC
1 CAACCGAAACACACCAGACAGAAGCTCATAAGAGCTAATC
* * * *
21142009 CAACTGAAACACGCCATACAGAAGCTCATAATAGCTAATC
1 CAACCGAAACACACCAGACAGAAGCTCATAAGAGCTAATC
* * * *
21142049 CAACTGAAACACACCAAACAGAAGCCCATAAGAGCTAATT
1 CAACCGAAACACACCAGACAGAAGCTCATAAGAGCTAATC
* * *
21142089 TAACCGAAACA-AGCCAAACAGTAGCTCATAAGAGCTAATC
1 CAACCGAAACACA-CCAGACAGAAGCTCATAAGAGCTAATC
*
21142129 CAACCGAAACACACCAGACAGAATCTCAT-AGAGCTAATC
1 CAACCGAAACACACCAGACAGAAGCTCATAAGAGCTAATC
* ** *
21142168 CAATCGAAACATGCCAGACAGAAGCTCATAAAAGCTAATC
1 CAACCGAAACACACCAGACAGAAGCTCATAAGAGCTAATC
* * *
21142208 CAATCAAAACACGCCAG
1 CAACCGAAACACACCAG
21142225 TTAGAGAGTA
Statistics
Matches: 226, Mismatches: 26, Indels: 7
0.87 0.10 0.03
Matches are distributed among these distances:
39 42 0.19
40 183 0.81
41 1 0.00
ACGTcount: A:0.45, C:0.28, G:0.14, T:0.13
Consensus pattern (40 bp):
CAACCGAAACACACCAGACAGAAGCTCATAAGAGCTAATC
Found at i:21150775 original size:50 final size:50
Alignment explanation
Indices: 21150717--21150856 Score: 154
Period size: 50 Copynumber: 2.8 Consensus size: 50
21150707 TATTGAGGTT
* * * *
21150717 ATGAGAGGTCCCACATAAGATCATGTCTGGGACATGGCGTTGGCTCCGAG
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
* * *
21150767 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
** * * * * *
21150817 ATGAGAACTCTCACGTAAGACCATATCTAGGATATGGCAT
1 ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCAT
21150857 TGGTAGTACA
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
50 76 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACATAAGACCATGTCTGGGACATGGCATGGGCACCGAG
Found at i:21150903 original size:49 final size:49
Alignment explanation
Indices: 21150725--21150910 Score: 151
Period size: 50 Copynumber: 3.8 Consensus size: 49
21150715 TTATGAGAGG
* * * * * * **
21150725 TCCCACATAAGATCATGTCTGGGACATGGCGTTGGCTCCGAGATGAGAGG
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGC-ACGACAGGAGAAC
* * * *
21150775 TCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA-CGACAGGAGAAC
* * * * *
21150825 TCTCACGTAAGACCATATCTAGGATATGGCATTGGTA-GTACAGGA-AAC
1 TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACG-ACAGGAGAAC
* *
21150873 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 -TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCA
21150911 TGTTATTATC
Statistics
Matches: 108, Mismatches: 25, Indels: 7
0.77 0.18 0.05
Matches are distributed among these distances:
48 4 0.04
49 34 0.31
50 70 0.65
ACGTcount: A:0.27, C:0.23, G:0.27, T:0.23
Consensus pattern (49 bp):
TCCCACGTAAGACCATGTCTGGGACATGGCATTGGCACGACAGGAGAAC
Found at i:21155368 original size:21 final size:22
Alignment explanation
Indices: 21155342--21155394 Score: 83
Period size: 21 Copynumber: 2.5 Consensus size: 22
21155332 CAGCGGTGGT
21155342 GGTGAGATTAGG-TACTGTAGC
1 GGTGAGATTAGGATACTGTAGC
21155363 GGTGAGATT-GGATACTGTAGC
1 GGTGAGATTAGGATACTGTAGC
*
21155384 AGTGAGATTAG
1 GGTGAGATTAG
21155395 AAACAGTGGT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 2 0.07
21 26 0.90
22 1 0.03
ACGTcount: A:0.26, C:0.08, G:0.38, T:0.28
Consensus pattern (22 bp):
GGTGAGATTAGGATACTGTAGC
Found at i:21155602 original size:30 final size:30
Alignment explanation
Indices: 21155562--21155618 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
21155552 TACAATTATA
* *
21155562 TTTATTTGTATTGCTCTTACAAAAATACCT
1 TTTATGTGTATTGCGCTTACAAAAATACCT
21155592 TTTATGTGTATTGCGCTTACAAAAATA
1 TTTATGTGTATTGCGCTTACAAAAATA
21155619 TCGAATATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.14, G:0.11, T:0.44
Consensus pattern (30 bp):
TTTATGTGTATTGCGCTTACAAAAATACCT
Found at i:21161079 original size:7 final size:7
Alignment explanation
Indices: 21161069--21161094 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
21161059 AGTACAGAGA
21161069 TTAAATT
1 TTAAATT
21161076 TTAAATT
1 TTAAATT
21161083 TTAAATT
1 TTAAATT
21161090 TTAAA
1 TTAAA
21161095 ATGGTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
TTAAATT
Found at i:21161586 original size:18 final size:18
Alignment explanation
Indices: 21161563--21161601 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
21161553 TACTACGGTT
21161563 TAATCATAATCGGGAAAG
1 TAATCATAATCGGGAAAG
21161581 TAATCATAATCGGGAAAG
1 TAATCATAATCGGGAAAG
21161599 TAA
1 TAA
21161602 AAGACTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (18 bp):
TAATCATAATCGGGAAAG
Found at i:21168728 original size:7 final size:7
Alignment explanation
Indices: 21168718--21168743 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
21168708 AGTACAGAGA
21168718 TTAAATT
1 TTAAATT
21168725 TTAAATT
1 TTAAATT
21168732 TTAAATT
1 TTAAATT
21168739 TTAAA
1 TTAAA
21168744 ATGGTATAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (7 bp):
TTAAATT
Found at i:21169235 original size:18 final size:18
Alignment explanation
Indices: 21169212--21169250 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
21169202 TACTACGGTT
21169212 TAATCATAATCGGGAAAG
1 TAATCATAATCGGGAAAG
21169230 TAATCATAATCGGGAAAG
1 TAATCATAATCGGGAAAG
21169248 TAA
1 TAA
21169251 AAGACTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.21, T:0.23
Consensus pattern (18 bp):
TAATCATAATCGGGAAAG
Found at i:21174149 original size:22 final size:23
Alignment explanation
Indices: 21174119--21174174 Score: 69
Period size: 22 Copynumber: 2.4 Consensus size: 23
21174109 TAAAATATTT
* *
21174119 TTAATAATTTAAAAACA-TAAAA
1 TTAAAAATTTAAAAAAACTAAAA
*
21174141 TTAAAAATTAAAAAAAACTAAAA
1 TTAAAAATTTAAAAAAACTAAAA
21174164 TTAAAATATTT
1 TTAAAA-ATTT
21174175 GTTGATATTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
22 14 0.50
23 11 0.39
24 3 0.11
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (23 bp):
TTAAAAATTTAAAAAAACTAAAA
Found at i:21177519 original size:20 final size:20
Alignment explanation
Indices: 21177479--21177520 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
21177469 CTCTTTTTTT
* *
21177479 TTTTATCTTTCTTCTTCTTC
1 TTTTATCTTTCTGCATCTTC
*
21177499 TTTTATCTTTCTGCATGTTC
1 TTTTATCTTTCTGCATCTTC
21177519 TT
1 TT
21177521 CTTTATTTAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.21, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTTATCTTTCTGCATCTTC
Found at i:21180789 original size:98 final size:98
Alignment explanation
Indices: 21180615--21180813 Score: 335
Period size: 98 Copynumber: 2.0 Consensus size: 98
21180605 GTACAATAAA
*
21180615 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
*
21180680 CCTCTAGAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
* * * *
21180713 ACTTTAAAAGAACATCCACTTATCTAAGATTTAAGAAATCACACCTAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
*
21180778 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
21180811 ACT
1 ACT
21180814 ATTTTTTAAA
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.37, C:0.25, G:0.10, T:0.29
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACATTAGGGCACAATT
CCTCTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:21182140 original size:19 final size:19
Alignment explanation
Indices: 21182116--21182227 Score: 147
Period size: 19 Copynumber: 5.8 Consensus size: 19
21182106 AATCATATAT
21182116 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
21182135 TCTAAGATT--ATATACATC
1 TCTAAGATTGCATAT-CATA
21182153 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
21182172 TCTAAGATTGTATATATCATA
1 TCTAAGATTG--CATATCATA
**
21182193 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
21182212 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
21182228 CTCAAAAATT
Statistics
Matches: 80, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
17 4 0.05
18 12 0.15
19 44 0.55
20 4 0.05
21 16 0.20
ACGTcount: A:0.35, C:0.15, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:21182213 original size:40 final size:39
Alignment explanation
Indices: 21182116--21182226 Score: 163
Period size: 40 Copynumber: 2.9 Consensus size: 39
21182106 AATCATATAT
*
21182116 TCTAAGATTGCATATCATATCTAAGA-T-TATATACATC
1 TCTAAGATTGCATATCATATCTAAGATTGTATATACATA
21182153 TCTAAGATTGCATATCATATCTAAGATTGTATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGTATATA-CATA
** *
21182193 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGTATAT
21182227 CCTCAAAAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
37 26 0.39
38 1 0.01
39 6 0.09
40 34 0.51
ACGTcount: A:0.35, C:0.14, G:0.11, T:0.40
Consensus pattern (39 bp):
TCTAAGATTGCATATCATATCTAAGATTGTATATACATA
Found at i:21182543 original size:44 final size:43
Alignment explanation
Indices: 21182441--21183208 Score: 399
Period size: 44 Copynumber: 17.7 Consensus size: 43
21182431 CTTCAATCTA
* *
21182441 CTCCACTGCAGCTTCAGGGAGATAAGACTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTG-CATCTT-AGTCTG
* *
21182486 C-CTCACTGTAACTTCAGGAAGATAAGACTTGCTTCCTTAGTCTG
1 CTC-CACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTCTG
* * *
21182530 CTCCACTGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTCTG
* * * * * *
21182571 CT-CTCTACAACTTTA-GAGAGATAAGATCTGTG-ATTTTAATCCG
1 CTCCACTGCAACTTCAGGA-AGATAAGA-CT-TGCATCTTAGTCTG
* * * * *
21182614 CTCTACTGCAACTTCAGGGAGATAGGATTATCGGC-T-TTAATCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACT-T--GCATCTTAGTCTG
* *
21182658 CTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTG-CATCTT-AGTCTG
* * *
21182703 C-CTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG
1 CTC-CACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTC-TG
* * * *
21182748 -TCCACCGCAACTTCAGGGAGATAAGACTAG-ATGC-GA-TCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTCTG
* * * * * *
21182788 CT-CTCTGTAACTTCA-GAGAGATAAGA-TCTGTAATTTTAATCCG
1 CTCCACTGCAACTTCAGGA-AGATAAGACT-TG-CATCTTAGTCTG
* ** * *
21182831 CTCCACTGCAACTTCATGG-AGATAGGA-TTGTCGGCTTTAATCTA
1 CTCCACTGCAACTTCA-GGAAGATAAGACTTG-CATC-TTAGTCTG
*
21182875 CTCCACTGCAACTTCAGGAAGATAAGATTTGCAATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTGC-ATCTT-AGTCTG
* * *
21182920 C-CTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG
1 CTC-CACTGCAACTTCAGGAAGATAAGACTTGCAT-CTTAGTC-TG
* * ** *
21182965 -TCCACCGCAACTTCAGGGAGATAAGAC-TAAATC-GA-TCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTGCATCTTAGTCTG
** ** * * * *
21183004 CT-CTTTATAACTTCA-GAGAGATAAGATCTAT-AATTTTAATCCG
1 CTCCACTGCAACTTCAGGA-AGATAAGA-CT-TGCATCTTAGTCTG
* * ** *
21183047 CTCCACTGCAACTTCAGGGAGATAGGA-TTGTCGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTG-CATC-TTAGTCTG
*
21183091 CTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTG
1 CTCCACTGCAACTTCAGGAAGATAAGACTTG-CATCTT-AGTCTG
* * *
21183136 C-CTCACTGTAACTTTA-GAAGGATAAGACTTGCTTACTTAGTCTG
1 CTC-CACTGCAACTTCAGGAA-GATAAGACTTGCAT-CTTAGTCTG
*
21183180 CTCCACTGCAACTTCAGGGAGATAAGACT
1 CTCCACTGCAACTTCAGGAAGATAAGACT
21183209 AAATGCGATC
Statistics
Matches: 554, Mismatches: 110, Indels: 119
0.71 0.14 0.15
Matches are distributed among these distances:
38 1 0.00
39 21 0.04
40 43 0.08
41 17 0.03
42 14 0.03
43 30 0.05
44 278 0.50
45 149 0.27
46 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
CTCCACTGCAACTTCAGGAAGATAAGACTTGCATCTTAGTCTG
Found at i:21182774 original size:217 final size:217
Alignment explanation
Indices: 21182430--21183309 Score: 1451
Period size: 217 Copynumber: 4.1 Consensus size: 217
21182420 AGGAATTAGT
* * * * *
21182430 GCTTCAATCTACTCCACTGCAGCTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * *
21182495 AACTTCAGGAAGATAAGACTTGCTTCCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
* * * *
21182560 GATGCGATCTGCTCTCTACAACTTTAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGCAA
131 AATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
*
21182625 CTTCAGGGAGATAGGATTATCG
196 CTTCAGGGAGATAGGATTGTCG
*
21182647 GCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
21182712 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTC-TGCTCCACCGCAACTTCAGGGAGATAAGACT
* **
21182776 AGATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
130 AAATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
*
21182841 ACTTCATGGAGATAGGATTGTCG
195 ACTTCAGGGAGATAGGATTGTCG
* *
21182864 GCTTTAATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGCAATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
21182929 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACT
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTC-TGCTCCACCGCAACTTCAGGGAGATAAGACT
* * *
21182993 AAAT-CGATCTGCTCTTTATAACTTCAGAGAGATAAGATCTATAATTTTAATCCGCTCCACTGCA
130 AAATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCA
21183057 ACTTCAGGGAGATAGGATTGTCG
195 ACTTCAGGGAGATAGGATTGTCG
21183080 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
* * *
21183145 AACTTTAGAAGGATAAGACTTGCTTACTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
* * *
21183210 AATGCGATCTGCTCTCTGCAACTTCAGAGGGATAAGATCTGTGATTTTAATCCGCTCCACTGCAA
131 AATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
21183275 CTTCAGGGAGATAGGATTGTCG
196 CTTCAGGGAGATAGGATTGTCG
*
21183297 ACTTTAATCTGCT
1 GCTTTAATCTGCT
21183310 TCCCACTATC
Statistics
Matches: 626, Mismatches: 34, Indels: 6
0.94 0.05 0.01
Matches are distributed among these distances:
215 2 0.00
216 204 0.33
217 418 0.67
218 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (217 bp):
GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGT
AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
AATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTGTCG
Found at i:21183246 original size:433 final size:434
Alignment explanation
Indices: 21182430--21183306 Score: 1481
Period size: 433 Copynumber: 2.0 Consensus size: 434
21182420 AGGAATTAGT
* * * *
21182430 GCTTCAATCTACTCCACTGCAGCTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTACTCCACTGCAACTTCAGGAAGATAAGACTTGCAATCTTCAGTCTGCCTCACTGT
* *
21182495 AACTTCAGGAAGATAAGACTTGCTTCCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTA
66 AACTTCAGGAAGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
* * * * *
21182560 GATGCGATCTGCTCTCTACAACTTTAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGCAA
131 AATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTATAATTTTAATCCGCTCCACTGCAA
*
21182625 CTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGC
196 CTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGC
*
21182690 CATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTGTCCACCG
261 CATCTTCAGTCTGCCTCACTGTAACTTCAGAAGGATAAGACTTGCTTACTTAGTCTTGTCCACCG
* *
21182755 CAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGTAACTTCAGAGAGATAAGATCTGTA
326 CAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTA
*
21182820 ATTTTAATCCGCTCCACTGCAACTTCATGGAGATAGGATTGTCG
391 ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCG
*
21182864 GCTTTAATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGCAATCTTCAGTCTGCCTCACTGT
1 GCTTTAATCTACTCCACTGCAACTTCAGGAAGATAAGACTTGCAATCTTCAGTCTGCCTCACTGT
*
21182929 AACTTCAGGAGGATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACT
66 AACTTCAGGAAGATAAGACTTGCTTACTTAGTC-TGCTCCACCGCAACTTCAGGGAGATAAGACT
* *
21182993 AAAT-CGATCTGCTCTTTATAACTTCAGAGAGATAAGATCTATAATTTTAATCCGCTCCACTGCA
130 AAATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTATAATTTTAATCCGCTCCACTGCA
*
21183057 ACTTCAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTG
195 ACTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTG
*
21183122 CCATCTTCAGTCTGCCTCACTGTAACTTTAGAAGGATAAGACTTGCTTACTTAGTC-TGCTCCAC
260 CCATCTTCAGTCTGCCTCACTGTAACTTCAGAAGGATAAGACTTGCTTACTTAGTCTTG-TCCAC
* *
21183186 TGCAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGGGATAAGATCTG
324 CGCAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTG
*
21183251 TGATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCG
389 TAATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCG
*
21183297 ACTTTAATCT
1 GCTTTAATCT
21183307 GCTTCCCACT
Statistics
Matches: 415, Mismatches: 26, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
432 2 0.00
433 290 0.70
434 121 0.29
435 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (434 bp):
GCTTTAATCTACTCCACTGCAACTTCAGGAAGATAAGACTTGCAATCTTCAGTCTGCCTCACTGT
AACTTCAGGAAGATAAGACTTGCTTACTTAGTCTGCTCCACCGCAACTTCAGGGAGATAAGACTA
AATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTATAATTTTAATCCGCTCCACTGCAA
CTTCAGGGAGATAGGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGC
CATCTTCAGTCTGCCTCACTGTAACTTCAGAAGGATAAGACTTGCTTACTTAGTCTTGTCCACCG
CAACTTCAGGGAGATAAGACTAAATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTA
ATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGTCG
Found at i:21183276 original size:44 final size:43
Alignment explanation
Indices: 21182435--21183309 Score: 285
Period size: 44 Copynumber: 20.2 Consensus size: 43
21182425 TTAGTGCTTC
* * *
21182435 AATCTACTCCACTGCAGCTTCAGGGAGATAAGA-CT-TGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTG--AT-TTT
* * * *
21182480 AGTCTGC-CTCACTGTAACTTCAGGAAGATAAGA-CT-TGCTTCCTT
1 AATCTGCTC-CACTGCAACTTCAGG-GGATAAGATCTGTGATT--TT
* * **
21182524 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CT-AGA-TGC
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGATTTT
* * * * *
21182565 GATCTGCT-CTCTACAACTTTAGAGAGATAAGATCTGTGATTTT
1 AATCTGCTCCACTGCAACTTCAG-GGGATAAGATCTGTGATTTT
* * * * **
21182608 AATCCGCTCTACTGCAACTTCAGGGAGATAGGAT-TATCGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGT-GATTTT
* ** *
21182652 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGAT-TTT
* * *
21182697 AGTCTGC-CTCACTGTAACTTCAGGAGGATAAGA-CT-TGCTTACTT
1 AATCTGCTC-CACTGCAACTTCAGG-GGATAAGATCTGTGATT--TT
* * * **
21182741 AGTCTTG-TCCACCGCAACTTCAGGGAGATAAGA-CT-AGA-TGC
1 AATC-TGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGATTTT
* * * * *
21182782 GATCTGCT-CTCTGTAACTTCAGAGAGATAAGATCTGTAATTTT
1 AATCTGCTCCACTGCAACTTCAG-GGGATAAGATCTGTGATTTT
* * * **
21182825 AATCCGCTCCACTGCAACTTCATGGAGATAGGAT-TGTCGGCTTT
1 AATCTGCTCCACTGCAACTTCA-GGGGATAAGATCTGT-GATTTT
* * * ** *
21182869 AATCTACTCCACTGCAACTTCAGGAAGATAAGATTTGCAATCTTC
1 AATCTGCTCCACTGCAACTTCAGG-GGATAAGATCTGTGAT-TTT
* * *
21182914 AGTCTGC-CTCACTGTAACTTCAGGAGGATAAGA-CT-TGCTTACTT
1 AATCTGCTC-CACTGCAACTTCAGG-GGATAAGATCTGTGATT--TT
* * ** *
21182958 AGTCTTG-TCCACCGCAACTTCAGGGAGATAAGA-C--T-AAATC
1 AATC-TGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGATTTT
* ** ** * * *
21182998 GATCTGCT-CTTTATAACTTCAGAGAGATAAGATCTATAATTTT
1 AATCTGCTCCACTGCAACTTCAG-GGGATAAGATCTGTGATTTT
* * **
21183041 AATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGTCGGCTTT
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGT-GATTTT
* * ** *
21183085 AATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTC
1 AATCTGCTCCACTGCAACTTCAGG-GGATAAGATCTGTGAT-TTT
* * * * *
21183130 AGTCTGC-CTCACTGTAACTTTAGAAGGATAAGA-CT-TGCTTACTT
1 AATCTGCTC-CACTGCAACTTCAG-GGGATAAGATCTGTGATT--TT
* * * **
21183174 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGA-C--TAAATGC
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGTGATTTT
* *
21183215 GATCTGCT-CTCTGCAACTTCAGAGGGATAAGATCTGTGATTTT
1 AATCTGCTCCACTGCAACTTCAG-GGGATAAGATCTGTGATTTT
* * *
21183258 AATCCGCTCCACTGCAACTTCAGGGAGATAGGAT-TGTCGACTTT
1 AATCTGCTCCACTGCAACTTCAGGG-GATAAGATCTGT-GATTTT
21183302 AATCTGCT
1 AATCTGCT
21183310 TCCCACTATC
Statistics
Matches: 608, Mismatches: 158, Indels: 129
0.68 0.18 0.14
Matches are distributed among these distances:
39 18 0.03
40 64 0.11
41 24 0.04
42 8 0.01
43 59 0.10
44 306 0.50
45 128 0.21
46 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
AATCTGCTCCACTGCAACTTCAGGGGATAAGATCTGTGATTTT
Found at i:21183452 original size:132 final size:132
Alignment explanation
Indices: 21183302--21184049 Score: 1237
Period size: 132 Copynumber: 5.7 Consensus size: 132
21183292 TGTCGACTTT
* * * *
21183302 AATCTGCTTCCCACTATCTTAGAAAGATATGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * * *
21183367 GGGAGATAAGATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAAACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
21183432 TA
131 TA
* * *
21183434 AATCTGCTTTCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
21183499 GGGAGATAATATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
21183564 TA
131 TA
*
21183566 AATCTGCTTCCCACTATCTTGGAAATATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
*
21183631 GGGAGATAAGATCTACAATTTTTAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
21183696 TA
131 TA
*
21183698 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* * * * *
21183763 AGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAAGGAGACAATGCTTGGTAGCC
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
21183828 TA
131 TA
* * *
21183830 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTTGATCTACTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
* *
21183895 GGGAGATAAGATCTACAATCTTCAACCTTCTACGCTGCTGCT-AGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
21183959 TA
131 TA
* **
21183961 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATTTGCTCCACTACTATTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
21184026 GGGAGATAAGATCTACAATTTTCA
66 GGGAGATAAGATCTACAATTTTCA
21184050 CTGATCTGTT
Statistics
Matches: 576, Mismatches: 40, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
131 102 0.18
132 474 0.82
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.31
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATTTTCAACCTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
TA
Found at i:21183506 original size:44 final size:44
Alignment explanation
Indices: 21183279--21183774 Score: 164
Period size: 44 Copynumber: 11.3 Consensus size: 44
21183269 CTGCAACTTC
* * *
21183279 AGGGAGATAGGA-TTGTCGACTTTAATCTGCTTCCCACTA-T-CTT
1 AGGGAGATAAGATTTGTCGTCTTCAATCTGC-T-CCACTACTGCTT
** * *
21183322 AGAAAGATATGATTTGTCGTCTTCGATCTGCTCCACTACTGCTT
1 AGGGAGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTT
* * * * * * *
21183366 AGGGAGATAAGATCT-ACAATCTTCAACCTACTCCACTGCTGCTC
1 AGGGAGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTT
* * * * * *
21183410 AGGGAAACAAGGCTTGGT-GGCTTAAATCTGCTTTCCACTA-T-CTT
1 AGGGAGATAA-GATTTGTCGTCTTCAATCTGC--TCCACTACTGCTT
* *
21183454 -GGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTT
1 AGG-GAGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTT
* * * * * * * * * *
21183498 AGGGAGATAATATCT-ACAATTTTCAACCTTCTCCGCTGCTGCTC
1 AGGGAGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTT
* * * * *
21183542 AGGGAGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT
1 AGGGAGATAA-GATTTGTCGTCTTCAATCTGC-T-CCACTACTGCTT
* * * * *
21183586 -GGAAATATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTT
1 AGG-GAGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTT
* * * * * * * * * *
21183630 AGGGAGATAAGATCT-ACAATTTTTAACCTTCTCCGCTGCTGCTC
1 AGGGAGATAAGATTTGTC-GTCTTCAATCTGCTCCACTACTGCTT
* * * * *
21183674 AGGGAGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTA-T-CTT
1 AGGGAGATAA-GATTTGTCGTCTTCAATCTGC-T-CCACTACTGCTT
* * *
21183718 -GGAAAGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTT
1 AGG-GAGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTT
*
21183762 AAGGAGATAAGAT
1 AGGGAGATAAGAT
21183775 CTACAATTTT
Statistics
Matches: 309, Mismatches: 111, Indels: 65
0.64 0.23 0.13
Matches are distributed among these distances:
42 25 0.08
43 38 0.12
44 217 0.70
45 15 0.05
46 14 0.05
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (44 bp):
AGGGAGATAAGATTTGTCGTCTTCAATCTGCTCCACTACTGCTT
Found at i:21185270 original size:5 final size:6
Alignment explanation
Indices: 21185248--21185292 Score: 54
Period size: 6 Copynumber: 7.2 Consensus size: 6
21185238 TTGGCCTCTC
* *
21185248 CTTTTA CTTTTT CTTTTT CTTTTTT CCTTTTT CCTTTT CTTTTT C
1 CTTTTT CTTTTT CTTTTT C-TTTTT -CTTTTT CTTTTT CTTTTT C
21185293 CCCCTTTTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
6 23 0.68
7 10 0.29
8 1 0.03
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (6 bp):
CTTTTT
Found at i:21185277 original size:20 final size:20
Alignment explanation
Indices: 21185249--21185291 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
21185239 TGGCCTCTCC
*
21185249 TTTTACTTTTTCTTTTTCTT
1 TTTTACTTTTTCCTTTTCTT
*
21185269 TTTTCCTTTTTCCTTTTCTT
1 TTTTACTTTTTCCTTTTCTT
21185289 TTT
1 TTT
21185292 CCCCCTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (20 bp):
TTTTACTTTTTCCTTTTCTT
Found at i:21190088 original size:23 final size:24
Alignment explanation
Indices: 21190060--21190105 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 24
21190050 ATATATATAT
21190060 GAAAATATTCA-TTTAAAAAAAAG
1 GAAAATATTCATTTTAAAAAAAAG
*
21190083 GAAAATATTCATTTTTAAAAAAA
1 GAAAATATTCATTTTAAAAAAAA
21190106 TATATATGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 11 0.52
24 10 0.48
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (24 bp):
GAAAATATTCATTTTAAAAAAAAG
Found at i:21190763 original size:19 final size:19
Alignment explanation
Indices: 21190739--21190852 Score: 156
Period size: 19 Copynumber: 5.8 Consensus size: 19
21190729 AATCATATGT
21190739 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
21190758 TCTAAGGATTATATATCATC
1 TCTAA-GATTGCATATCATA
21190778 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
21190797 TCTAAGATTGCTTATATCATA
1 TCTAAGATTGC--ATATCATA
**
21190818 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
21190837 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
21190853 CTCAAAAATT
Statistics
Matches: 82, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
19 49 0.60
20 16 0.20
21 17 0.21
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:21190827 original size:40 final size:40
Alignment explanation
Indices: 21190739--21190851 Score: 167
Period size: 40 Copynumber: 2.9 Consensus size: 40
21190729 AATCATATGT
*
21190739 TCTAAGATTGCATATCATATCTAAGGATT--ATATATCATC
1 TCTAAGATTGCATATCATATCTAA-GATTGCATATATCATA
*
21190778 TCTAAGATTGCATATCATATCTAAGATTGCTTATATCATA
1 TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
**
21190818 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATTGCATAT
21190852 CCTCAAAAAT
Statistics
Matches: 67, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
38 4 0.06
39 24 0.36
40 39 0.58
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.40
Consensus pattern (40 bp):
TCTAAGATTGCATATCATATCTAAGATTGCATATATCATA
Found at i:21190835 original size:59 final size:58
Alignment explanation
Indices: 21190739--21190852 Score: 167
Period size: 59 Copynumber: 1.9 Consensus size: 58
21190729 AATCATATGT
* *
21190739 TCTAAGATTGCATATCATATCTAAGGATTATATATCATCTCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATATCTAAGGATTACATATCATATCTAAGATTGCATATCATA
* *
21190797 TCTAAGATTGCTTATATCATATCT-TGGATTGCATATCATATCTAAGATTGCATATC
1 TCTAAGATTGC--ATATCATATCTAAGGATTACATATCATATCTAAGATTGCATATC
21190853 CTCAAAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
58 11 0.22
59 28 0.56
60 11 0.22
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.39
Consensus pattern (58 bp):
TCTAAGATTGCATATCATATCTAAGGATTACATATCATATCTAAGATTGCATATCATA
Found at i:21199851 original size:18 final size:18
Alignment explanation
Indices: 21199836--21199876 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
21199826 GTATCTTTTG
21199836 AATAAATCACCACTTTCT
1 AATAAATCACCACTTTCT
21199854 AATAAATCACCACTTTCT
1 AATAAATCACCACTTTCT
21199872 AATAA
1 AATAA
21199877 GTGCTCATGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (18 bp):
AATAAATCACCACTTTCT
Found at i:21209725 original size:17 final size:19
Alignment explanation
Indices: 21209691--21209727 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
21209681 AATATAAATT
21209691 AGTAATTTATTATATTTTA
1 AGTAATTTATTATATTTTA
21209710 AGTAATTT-TT-TATTTTA
1 AGTAATTTATTATATTTTA
21209727 A
1 A
21209728 TATAAAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 8 0.44
18 2 0.11
19 8 0.44
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.59
Consensus pattern (19 bp):
AGTAATTTATTATATTTTA
Found at i:21210095 original size:16 final size:18
Alignment explanation
Indices: 21210067--21210104 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
21210057 CTAAATAATA
21210067 AAATATAATAATTA-TTT
1 AAATATAATAATTACTTT
21210084 AAATAT-ATAATTACTTT
1 AAATATAATAATTACTTT
21210101 AAAT
1 AAAT
21210105 TCTTAAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 7 0.35
17 13 0.65
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (18 bp):
AAATATAATAATTACTTT
Found at i:21210605 original size:32 final size:33
Alignment explanation
Indices: 21210565--21210629 Score: 123
Period size: 32 Copynumber: 2.0 Consensus size: 33
21210555 TTTTTAAATT
21210565 TAAATTTAATTATAAAAG-ATATAAAATATCAA
1 TAAATTTAATTATAAAAGTATATAAAATATCAA
21210597 TAAATTTAATTATAAAAGTATATAAAATATCAA
1 TAAATTTAATTATAAAAGTATATAAAATATCAA
21210630 GTGCAAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 18 0.56
33 14 0.44
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (33 bp):
TAAATTTAATTATAAAAGTATATAAAATATCAA
Found at i:21215944 original size:30 final size:29
Alignment explanation
Indices: 21215910--21215975 Score: 69
Period size: 29 Copynumber: 2.2 Consensus size: 29
21215900 TAGTCGCTAT
* *
21215910 ATAAAAAGAAAATACAAGAGTTTTAGTTGA
1 ATAAAAAGAAAATA-AAGAATATTAGTTGA
* * * *
21215940 ATAAAGAGTAAATAAATAATATTATTTGA
1 ATAAAAAGAAAATAAAGAATATTAGTTGA
21215969 ATAAAAA
1 ATAAAAA
21215976 AATAACACAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
29 17 0.59
30 12 0.41
ACGTcount: A:0.58, C:0.02, G:0.12, T:0.29
Consensus pattern (29 bp):
ATAAAAAGAAAATAAAGAATATTAGTTGA
Found at i:21217339 original size:51 final size:52
Alignment explanation
Indices: 21217282--21217555 Score: 324
Period size: 51 Copynumber: 5.1 Consensus size: 52
21217272 AGGTTATTTT
* * *
21217282 CATTTTCATTTTGGAGAAAACTACATTCATTTCCAAATGA-TTCCATTTCTC
1 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTTCCATTTCTC
* *
21217333 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGA-TTCTATTTCTA
1 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTTCCATTTCTC
21217384 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAAT-ATTTCCATTTCTC
1 CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTTCCATTTCTC
*
21217435 CATTTTCACTTTCATTTTGAAGAAAACCATAATCA-TTCCAAATGATTTGCCATTTCTC
1 CA---T---TTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTT-CCATTTCTC
* * *
21217493 CATTCACTTTTATTTTGAAGAAAACCATCATCA-TTCCAAATGATTTCCCATTTCTC
1 CA-T---TTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTT-CCATTTCTC
21217549 CATTTTC
1 CATTTTC
21217556 TCTATTTCTT
Statistics
Matches: 202, Mismatches: 12, Indels: 17
0.87 0.05 0.07
Matches are distributed among these distances:
50 1 0.00
51 95 0.47
52 3 0.01
54 1 0.00
55 1 0.00
56 61 0.30
57 29 0.14
58 11 0.05
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.41
Consensus pattern (52 bp):
CATTTTCATTTTGGAGAAAACCATAATCATTTCCAAATGATTTCCATTTCTC
Found at i:21221327 original size:2 final size:2
Alignment explanation
Indices: 21221320--21221350 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
21221310 CATTACCAAA
*
21221320 AC AC AC AC AC AC AC AC AC AC AC AC AT AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
21221351 TATGAACATT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.45, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:21225412 original size:63 final size:63
Alignment explanation
Indices: 21225331--21225523 Score: 206
Period size: 63 Copynumber: 3.1 Consensus size: 63
21225321 TAGTTTGGCT
* ** **
21225331 ACAACATTATTGAGTGGCTTGACCACAACGTGCTGCTTGTATGTGATATTCAGTGGCTTGACC
1 ACAACGTTATTGAGTGGCTTGACCACAACGTGCAACTTGTATACGATATTCAGTGGCTTGACC
* * * * *
21225394 ACAACGTTATTGAGTGGCTTGACCACTATGTGCAACTTGTCTACGATATTGAGTGGTTTGACC
1 ACAACGTTATTGAGTGGCTTGACCACAACGTGCAACTTGTATACGATATTCAGTGGCTTGACC
* * * * * * * * * *
21225457 ACAACGTTATTTAGTGGTTTGACTACAATGAGCAACTTCTCTGCAATATACAGTGGCTTGACC
1 ACAACGTTATTGAGTGGCTTGACCACAACGTGCAACTTGTATACGATATTCAGTGGCTTGACC
21225520 ACAA
1 ACAA
21225524 TGTGGAGTGT
Statistics
Matches: 109, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
63 109 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.32
Consensus pattern (63 bp):
ACAACGTTATTGAGTGGCTTGACCACAACGTGCAACTTGTATACGATATTCAGTGGCTTGACC
Found at i:21228352 original size:644 final size:644
Alignment explanation
Indices: 21227116--21228370 Score: 2082
Period size: 644 Copynumber: 1.9 Consensus size: 644
21227106 AATTGTTGAC
21227116 CATTCTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
1 CATTCTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
* *
21227181 TTTGTTTTGAATCAACTTACCATCCAAAGCCCCCTTTTTACTCATGATCCACTTTTTACTCCTTT
66 TTTGTTTTGAATCAACTTACAATCCAAAGCCCCCTTTTTACTCATGATCCACTTTTTACTCCCTT
* *
21227246 TGCCCCTAAACATACCATCTTTTCACCTTTGACTACCCATGGCCGGTCATAGCACCCCAAAAACC
131 TGCCCCTAAACATACCATCTTTTCACCTTTGACTACACATGGCCGGTCACAGCACCCCAAAAACC
* *
21227311 CTACTTTTCATTTTATTTTTCTAGTTTTTCACTCCTCTCCTCTCTTTACCGTCCACCACCCTTTT
196 CCACTTTTCATTTTATTTTTCTAGTTTTTCACTCCTCTCCTCTCTTTACCGTCCACCACCCTTCT
* *
21227376 GCACAAGATTTTCAGCTTTTTCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCTTC
261 CCACAAGATTTTCAGCTTTTTCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCCTC
* *
21227441 TTCTACTCCACCACCACACACGACAATCACACCGCCACCTTACCTCCATCATCGTCGTTGTCGCA
326 TTCCACTCCACCACCACACACGACAATCACACCACCACCTTACCTCCATCATCGTCGTTGTCGCA
* *** * *
21227506 CTGCCGCCGCACCGTTTCCATCGGCCACTGTTGATTTTCACCATTTTTCTTATTTTCTTCTCTTT
391 CAGCCGCCGCACCACCTCCATCGACCACTGTTGATTTTCACCATTTTTCTTATTTTCTCCTCTTT
* *
21227571 CCAAAAATCATCTCCGTAAATTCTTGAATTTGATTTTTAAATATTAAAATATCAAATTTTGTATT
456 CCAAAAATCATCTCCATAAATTCTTGAATTTGATTTTTAAATATTAAAATATCAAATTTCGTATT
** **
21227636 ATTTTCTCTAAACTCTTCTATTTTGTGTTTATAGTGTTGAATCCTCCACTTTAATCGGCTTTTCG
521 ATTTTCTCTAAACTCTTCTATTTTGCATTTATAGTGCCGAATCCTCCACTTTAATCGGCTTTTCG
21227701 AGATTTATCGT-TGAGCCTTTTTCCTCCGTTTTATCGTAGGTATGAAGGACTACTATTCA
586 AGATTTATCGTCT-AGCCTTTTTCCTCCGTTTTATCGTAGGTATGAAGGACTACTATTCA
*
21227760 CATTTTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
1 CATTCTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
21227825 TTTGTTTTGAATCAACTTACAATCCAAAG-CCCCTGTTTTACTCATGATCCACTTTTTACTCCCT
66 TTTGTTTTGAATCAACTTACAATCCAAAGCCCCCT-TTTTACTCATGATCCACTTTTTACTCCCT
* * *
21227889 TTGTCTCTAAACATACCATCTTTTCACCTTTGACTACACATGGCCGGTCCCAGCACCCCAAAAAC
130 TTGCCCCTAAACATACCATCTTTTCACCTTTGACTACACATGGCCGGTCACAGCACCCCAAAAAC
*
21227954 CCCACTTTTCATTTTATTTTTCTAGTTTTTCTCTCCTCTCCTCTCTTTACCGTCCACCACCCTTC
195 CCCACTTTTCATTTTATTTTTCTAGTTTTTCACTCCTCTCCTCTCTTTACCGTCCACCACCCTTC
*
21228019 TCCACAAGTTTTTCAGCTTTTTCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCCT
260 TCCACAAGATTTTCAGCTTTTTCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCCT
* * * *
21228084 CTTCCACTCCACCACCACACATGGCAATCGCACCACCACCTTACCTCCATCATCGTCGTTGTTGC
325 CTTCCACTCCACCACCACACACGACAATCACACCACCACCTTACCTCCATCATCGTCGTTGTCGC
* * *
21228149 ACAGCCGCCGCGCCACCTCCATTGACCACTGTTGATTTTCACCATTTTTCTTCTTTTCTCCTCTT
390 ACAGCCGCCGCACCACCTCCATCGACCACTGTTGATTTTCACCATTTTTCTTATTTTCTCCTCTT
* * **
21228214 TCCAAAAATCATCTCCATAAATTCTTGAATTTTATTTTTAAATATTAAAATATTAGCTTTCGTAT
455 TCCAAAAATCATCTCCATAAATTCTTGAATTTGATTTTTAAATATTAAAATATCAAATTTCGTAT
* * *
21228279 TATTTTCTCTAAACTCTTCTATTTTGCATTTATAGTGCCGACTCGTCCACTTTAATCGGCTTTTT
520 TATTTTCTCTAAACTCTTCTATTTTGCATTTATAGTGCCGAATCCTCCACTTTAATCGGCTTTTC
* *
21228344 GGGATTTATTGTCTAGCCTTTTTCCTC
585 GAGATTTATCGTCTAGCCTTTTTCCTC
21228371 TATTTTGTAA
Statistics
Matches: 565, Mismatches: 44, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
643 5 0.01
644 559 0.99
645 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.10, T:0.40
Consensus pattern (644 bp):
CATTCTAGAAGGTCAACCCTCATTATTGTCCAAGCTTTTCCATAAAAGGGGGAGATTCCTTTCCT
TTTGTTTTGAATCAACTTACAATCCAAAGCCCCCTTTTTACTCATGATCCACTTTTTACTCCCTT
TGCCCCTAAACATACCATCTTTTCACCTTTGACTACACATGGCCGGTCACAGCACCCCAAAAACC
CCACTTTTCATTTTATTTTTCTAGTTTTTCACTCCTCTCCTCTCTTTACCGTCCACCACCCTTCT
CCACAAGATTTTCAGCTTTTTCTTCTTTATTTTACCACCTTTGAAGCCATATTTCTTCATTCCTC
TTCCACTCCACCACCACACACGACAATCACACCACCACCTTACCTCCATCATCGTCGTTGTCGCA
CAGCCGCCGCACCACCTCCATCGACCACTGTTGATTTTCACCATTTTTCTTATTTTCTCCTCTTT
CCAAAAATCATCTCCATAAATTCTTGAATTTGATTTTTAAATATTAAAATATCAAATTTCGTATT
ATTTTCTCTAAACTCTTCTATTTTGCATTTATAGTGCCGAATCCTCCACTTTAATCGGCTTTTCG
AGATTTATCGTCTAGCCTTTTTCCTCCGTTTTATCGTAGGTATGAAGGACTACTATTCA
Found at i:21233921 original size:49 final size:48
Alignment explanation
Indices: 21233816--21234863 Score: 1623
Period size: 47 Copynumber: 21.9 Consensus size: 48
21233806 TAGTATGGCG
*
21233816 TAATGGCTGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
*
21233863 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
21233912 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
21233961 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
*
21234008 TAATGGCCGATGTGATGAATGTGAAAGTGTATATAAATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
*
21234057 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATATGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
21234106 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
*
21234153 TAATGGCCGAAGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
21234202 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
21234249 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
* *
21234298 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
* * * * * *
21234345 GAGTGGCC-A-ATGA-GTAT-TCGAATA-TGAAATGATA-GT-AT--GGCG
1 TAATGGCCGATGTGATGAATGT-GAA-AGTGATAT-ATATGTGATAAGGCC
*
21234387 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
21234436 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
21234485 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
21234532 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
21234579 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCC
21234628 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
*
21234675 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAATGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG---ATATATATGTGATAAGGCC
21234726 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
* *
21234773 TAATGGCCGATGTGATGAATGTGAAAGTG-TATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
* * * * *
21234820 GAGTGGCCAATGTGATGGATGTGAAAGTG-TATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAG
21234864 TCCCGAAGGG
Statistics
Matches: 936, Mismatches: 37, Indels: 56
0.91 0.04 0.05
Matches are distributed among these distances:
42 8 0.01
43 2 0.00
44 13 0.01
45 19 0.02
46 10 0.01
47 430 0.46
49 408 0.44
51 46 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (48 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCC
Found at i:21233994 original size:96 final size:94
Alignment explanation
Indices: 21233816--21234863 Score: 1626
Period size: 96 Copynumber: 11.0 Consensus size: 94
21233806 TAGTATGGCG
* *
21233816 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
21233881 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
21233912 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
21233977 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
21234008 TAATGGCCGATGTGATGAATGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATAT--ATGTGATAAGGCCTAATGGCCGATGTGAT
*
21234073 GAATGTGAAAGTGTATATATATGTGATATGGCC
64 GAATGTGAAAGTG--TATATATGTGATAAGGCC
*
21234106 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAAGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
21234171 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
21234202 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
21234267 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
* * * * * *
21234298 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGAGTATT
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG-A-T
* *
21234363 CGAATATGAAA-TG---ATA-GT-AT--GGCG
64 -GAATGTGAAAGTGTATATATGTGATAAGGCC
*
21234387 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
21234452 GAATGTGAAAGTGTATATATATGTGATAAGGCC
64 GAATGTGAAAGTG--TATATATGTGATAAGGCC
21234485 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
21234550 ATGTGAAAGTGTATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
21234579 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
21234644 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
*
21234675 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAATGCCTAATGGCCGATGTG
1 TAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTG
21234740 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
62 ATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
21234773 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAATGTGATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
21234838 ATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGAAAGTGTATATATGTGATAAG
21234864 TCCCGAAGGG
Statistics
Matches: 894, Mismatches: 33, Indels: 52
0.91 0.03 0.05
Matches are distributed among these distances:
88 9 0.01
89 34 0.04
90 1 0.00
91 28 0.03
92 2 0.00
93 3 0.00
94 109 0.12
95 2 0.00
96 470 0.53
97 1 0.00
98 226 0.25
99 9 0.01
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:21234079 original size:145 final size:143
Alignment explanation
Indices: 21233816--21234863 Score: 1679
Period size: 145 Copynumber: 7.3 Consensus size: 143
21233806 TAGTATGGCG
* *
21233816 TAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
21233881 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
21233946 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
21233961 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
21234026 ATGTGAAAGTGTATATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TAT
*
21234091 ATATGTGATATGGCC
129 ATATGTGATAAGGCC
*
21234106 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAAGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
21234171 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
21234236 ATGTGATAAGGCC
131 ATGTGATAAGGCC
21234249 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
* * * * * * *
21234314 GAATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAATGAGTATTCGAATATGAAA-TG
64 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG-A-T-GAATGTGAAAGTG
*
21234376 ---ATA-GT-AT--GGCG
126 TATATATGTGATAAGGCC
*
21234387 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
21234452 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
64 GAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
21234517 ATATGTGATAAGGCC
129 ATATGTGATAAGGCC
21234532 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
21234597 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
66 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
21234662 ATGTGATAAGGCC
131 ATGTGATAAGGCC
*
21234675 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGTGATAATGCCTAATGGCCGATGTG
1 TAATGGCCGATGTGATGAATGTGAAAGTG----TATATATGTGATAAGGCCTAATGGCCGATGTG
21234740 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
62 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
21234803 ATATATGTGACAGGGCC
127 ATATATGTGATAAGGCC
* * * * *
21234820 GAGTGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
21234864 TCCCGAAGGG
Statistics
Matches: 849, Mismatches: 35, Indels: 42
0.92 0.04 0.05
Matches are distributed among these distances:
137 9 0.01
138 83 0.10
139 1 0.00
140 28 0.03
141 18 0.02
142 5 0.01
143 217 0.26
144 1 0.00
145 432 0.51
146 9 0.01
147 46 0.05
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (143 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
ATGTGATAAGGCC
Found at i:21238476 original size:21 final size:19
Alignment explanation
Indices: 21238399--21238482 Score: 55
Period size: 21 Copynumber: 4.3 Consensus size: 19
21238389 TTTCATGTCA
21238399 TTATTAAGCTAACATAAAAAT
1 TTATTAA-CT-ACATAAAAAT
* * *
21238420 TTATTGAAATA-ATCAAACT
1 TTATT-AACTACATAAAAAT
* *
21238439 TTATTCA-TACTTAAAAAT
1 TTATTAACTACATAAAAAT
*
21238457 TTATTAAGCTAACATAAAAAA
1 TTATTAA-CT-ACATAAAAAT
21238478 TTATT
1 TTATT
21238483 GAAATAATCA
Statistics
Matches: 48, Mismatches: 10, Indels: 10
0.71 0.15 0.15
Matches are distributed among these distances:
17 2 0.04
18 12 0.25
19 11 0.23
20 2 0.04
21 19 0.40
22 2 0.04
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.38
Consensus pattern (19 bp):
TTATTAACTACATAAAAAT
Found at i:21238489 original size:58 final size:58
Alignment explanation
Indices: 21238399--21238511 Score: 217
Period size: 58 Copynumber: 1.9 Consensus size: 58
21238389 TTTCATGTCA
*
21238399 TTATTAAGCTAACATAAAAATTTATTGAAATAATCAAACTTTATTCATACTTAAAAAT
1 TTATTAAGCTAACATAAAAAATTATTGAAATAATCAAACTTTATTCATACTTAAAAAT
21238457 TTATTAAGCTAACATAAAAAATTATTGAAATAATCAAACTTTATTCATACTTAAA
1 TTATTAAGCTAACATAAAAAATTATTGAAATAATCAAACTTTATTCATACTTAAA
21238512 TTTAGTATAC
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.49, C:0.11, G:0.04, T:0.37
Consensus pattern (58 bp):
TTATTAAGCTAACATAAAAAATTATTGAAATAATCAAACTTTATTCATACTTAAAAAT
Found at i:21248824 original size:40 final size:40
Alignment explanation
Indices: 21248769--21248848 Score: 151
Period size: 40 Copynumber: 2.0 Consensus size: 40
21248759 TTAGAATAAG
21248769 TGTACCATTCGAATTTCAACATTAGTGAAACTTCTCCTCT
1 TGTACCATTCGAATTTCAACATTAGTGAAACTTCTCCTCT
*
21248809 TGTACCATTCGAATTTCAACATTAGTGACACTTCTCCTCT
1 TGTACCATTCGAATTTCAACATTAGTGAAACTTCTCCTCT
21248849 ACCGTTGTTT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.26, C:0.26, G:0.10, T:0.38
Consensus pattern (40 bp):
TGTACCATTCGAATTTCAACATTAGTGAAACTTCTCCTCT
Found at i:21254730 original size:15 final size:15
Alignment explanation
Indices: 21254710--21254742 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
21254700 TAGCTAGTTA
21254710 AATTATGCAAAATTT
1 AATTATGCAAAATTT
21254725 AATTATGCAAAATTT
1 AATTATGCAAAATTT
21254740 AAT
1 AAT
21254743 GCATAAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.39
Consensus pattern (15 bp):
AATTATGCAAAATTT
Found at i:21261936 original size:61 final size:61
Alignment explanation
Indices: 21261841--21261958 Score: 200
Period size: 61 Copynumber: 1.9 Consensus size: 61
21261831 ACATTAATAA
* *
21261841 TAAATTAATAAAATATTATATAGATAAATATTAAATTTAATTCCATATCTCATATTAGTAT
1 TAAATTAATAAAATACTATATAGATAAATATTAAATTTAATTCAATATCTCATATTAGTAT
* *
21261902 TAAATTAATAAAATACTATCTAGATAAATATTAAATTTAATTTAATATCTCATATTA
1 TAAATTAATAAAATACTATATAGATAAATATTAAATTTAATTCAATATCTCATATTA
21261959 ATATCTAGAA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 53 1.00
ACGTcount: A:0.48, C:0.07, G:0.03, T:0.42
Consensus pattern (61 bp):
TAAATTAATAAAATACTATATAGATAAATATTAAATTTAATTCAATATCTCATATTAGTAT
Found at i:21261942 original size:32 final size:30
Alignment explanation
Indices: 21261836--21261938 Score: 91
Period size: 31 Copynumber: 3.4 Consensus size: 30
21261826 TAATCACATT
* *
21261836 AATAATAAATTAATAAAATATTATATAGATA
1 AATATTAAATTAATAAAATA-TATCTAGATA
*** * * *
21261867 AATATTAAATTTAATTCCATATCTC-ATATT
1 AATATTAAA-TTAATAAAATATATCTAGATA
*
21261897 AGTATTAAATTAATAAAATACTATCTAGATA
1 AATATTAAATTAATAAAATA-TATCTAGATA
21261928 AATATTAAATT
1 AATATTAAATT
21261939 TAATTTAATA
Statistics
Matches: 53, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
29 8 0.15
30 14 0.26
31 23 0.43
32 8 0.15
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (30 bp):
AATATTAAATTAATAAAATATATCTAGATA
Found at i:21263575 original size:23 final size:23
Alignment explanation
Indices: 21263547--21263598 Score: 104
Period size: 23 Copynumber: 2.3 Consensus size: 23
21263537 AAATTAACTT
21263547 AATAAATAATGTTTATTTTGAGA
1 AATAAATAATGTTTATTTTGAGA
21263570 AATAAATAATGTTTATTTTGAGA
1 AATAAATAATGTTTATTTTGAGA
21263593 AATAAA
1 AATAAA
21263599 AAAACATGTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.12, T:0.40
Consensus pattern (23 bp):
AATAAATAATGTTTATTTTGAGA
Found at i:21275452 original size:18 final size:17
Alignment explanation
Indices: 21275424--21275458 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
21275414 ATTATTAAGA
*
21275424 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
21275441 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
21275459 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:21275707 original size:45 final size:44
Alignment explanation
Indices: 21275618--21275712 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
21275608 TTACACCTCT
*
21275618 ATTACATTCAACCAAACACAGGATTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACACAGGATTACTATTACACCTCTATTCC
*** *
21275662 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACACAGGA-TTACTATTACACCTCTATTCC
21275707 ATTACA
1 ATTACA
21275713 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 20 0.44
45 25 0.56
ACGTcount: A:0.34, C:0.27, G:0.06, T:0.33
Consensus pattern (44 bp):
ATTACATTCAACCAAACACAGGATTACTATTACACCTCTATTCC
Found at i:21275712 original size:16 final size:16
Alignment explanation
Indices: 21275693--21275744 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
21275683 GATTTGCTAT
* *
21275693 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
21275709 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21275725 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
21275741 TACA
1 TACA
21275745 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.35, C:0.37, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:21278656 original size:8 final size:8
Alignment explanation
Indices: 21278643--21278669 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
21278633 TTAATGCTTA
21278643 AAAATATT
1 AAAATATT
21278651 AAAATATT
1 AAAATATT
21278659 AAAATATT
1 AAAATATT
21278667 AAA
1 AAA
21278670 TTTTAATAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (8 bp):
AAAATATT
Found at i:21280362 original size:32 final size:31
Alignment explanation
Indices: 21280315--21280385 Score: 106
Period size: 32 Copynumber: 2.3 Consensus size: 31
21280305 AAATTACTCT
* * *
21280315 TCCCCTAACTTATTACAAGTTGTTATTTTTC
1 TCCCCTAACTCATTACAAGTTATTATTTCTC
21280346 TCCCTCTAACTCATTACAAGTTATTATTTCTC
1 TCCC-CTAACTCATTACAAGTTATTATTTCTC
21280378 TCCCCTAA
1 TCCCCTAA
21280386 TGTCGAAAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
31 8 0.22
32 28 0.78
ACGTcount: A:0.24, C:0.28, G:0.04, T:0.44
Consensus pattern (31 bp):
TCCCCTAACTCATTACAAGTTATTATTTCTC
Found at i:21285089 original size:40 final size:41
Alignment explanation
Indices: 21285005--21285089 Score: 109
Period size: 40 Copynumber: 2.1 Consensus size: 41
21284995 AATTATAGAA
* * * *
21285005 TACTGAATATTGTTTTTGAGTACTGAATTGAATTGTGAAGT
1 TACTGAATATTGTTTATGAGTACTGAATTGAACTGTAAAAT
* *
21285046 TACTGAATATTG-TTATGTGTACTGCATTGAACTGTAAAAT
1 TACTGAATATTGTTTATGAGTACTGAATTGAACTGTAAAAT
21285086 TACT
1 TACT
21285090 AAAGTAATGA
Statistics
Matches: 38, Mismatches: 6, Indels: 1
0.84 0.13 0.02
Matches are distributed among these distances:
40 26 0.68
41 12 0.32
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (41 bp):
TACTGAATATTGTTTATGAGTACTGAATTGAACTGTAAAAT
Found at i:21292605 original size:17 final size:17
Alignment explanation
Indices: 21292557--21292595 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
21292547 GAAAGAAGAT
* *
21292557 ATTTCGTTTAAGTTTTA
1 ATTTTGTTTAATTTTTA
21292574 ATTTTGTTTAATTTTTA
1 ATTTTGTTTAATTTTTA
21292591 ATTTT
1 ATTTT
21292596 TTATGATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.23, C:0.03, G:0.08, T:0.67
Consensus pattern (17 bp):
ATTTTGTTTAATTTTTA
Found at i:21293973 original size:140 final size:140
Alignment explanation
Indices: 21293762--21294190 Score: 655
Period size: 140 Copynumber: 3.1 Consensus size: 140
21293752 AATCATAAGA
** * * * *
21293762 TGACACTTTTGGGGTGACACTTTCCTAAGTGTTGGGATAAACTTGCCAACATATGCTTTGGTCAA
1 TGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAA
* **
21293827 GTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATATTAGTTGGCTTTGTTC
66 CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTTC
*
21293892 GACACTATGC
131 AACACTATGC
* * * *
21293902 CGATACTTTTGGGCCGACACTTTCCTAAGTGTTGGTATAGATTTGCCGACATACGCTTTGGCCAA
1 TGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAA
* *
21293967 CCCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTCGGCTTTG-TC
66 CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTTC
21294031 TAACACTATGC
131 -AACACTATGC
*
21294042 TGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGTCGACATACGCTTTGGCCAA
1 TGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAA
* *
21294107 CTCTTTGTATAAGGGTTGGGATATGCATGCCT-AGGATAACGCTTAAATAAGAGTTGGCTTTGTC
66 CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGG-CAACGCTTAAATAAGAGTTGGCTTTGTT
21294171 CAACACTATGC
130 CAACACTATGC
21294182 TGACACTTT
1 TGACACTTT
21294191 CCTAAGTGTT
Statistics
Matches: 261, Mismatches: 25, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
139 5 0.02
140 255 0.98
141 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (140 bp):
TGACACTTTTGGGCCGACACTTTCCTAAGTGTTGGGATAGACTTGCCGACATACGCTTTGGCCAA
CTCTTTGTATAAGGGTTGGGATATGCATGCCTAAGGCAACGCTTAAATAAGAGTTGGCTTTGTTC
AACACTATGC
Found at i:21298251 original size:14 final size:14
Alignment explanation
Indices: 21298206--21298263 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
21298196 ATATTTAATA
*
21298206 TTAAGAATT-TTAT
1 TTAATAATTATTAT
* *
21298219 TAAATTATATATT-T
1 TTAATAAT-TATTAT
21298233 TTAATAAATTA-TAT
1 TTAAT-AATTATTAT
21298247 TTAATAATTATTAT
1 TTAATAATTATTAT
21298261 TTA
1 TTA
21298264 TAGTATTATA
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
13 11 0.31
14 20 0.57
15 4 0.11
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TTAATAATTATTAT
Found at i:21298325 original size:107 final size:108
Alignment explanation
Indices: 21298105--21298481 Score: 519
Period size: 107 Copynumber: 3.4 Consensus size: 108
21298095 AAAGTGGGGG
*
21298105 AAATTATATATTTTTATTAAATTATATCTAATAATAATTATTTTAAATTATATAGTATTATATAT
1 AAATTATATA-TTTTAATAAATTATAT-T-ATAATAATTA-TTT--ATT-TATAGTATTATATAT
21298170 TATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
59 TATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
21298220 AAATTATATATTTTTAATAAATTATATT-TAATAATTA-TTATTTATAGTATTATATATTATGAT
1 AAATTATATA-TTTTAATAAATTATATTATAATAATTATTTATTTATAGTATTATATATTATGAT
21298283 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
65 TTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
* *
21298327 AAATTATATATTTTAAT-AA-TATATTTAATAATAATTATTTTAAATATATTTTATTATTATATA
1 AAATTATATATTTTAATAAATTATA-TT-ATAATAATTA--TT---TAT-TTATAGTATTATATA
21298390 TTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
58 TTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
*
21298441 AAATTATATATTTTAATTAAAATATATTTACTAATAATTAT
1 AAATTATATATTTTAA-TAAATTATA-TTA-TAATAATTAT
21298482 GTTAAAATAT
Statistics
Matches: 245, Mismatches: 3, Indels: 28
0.89 0.01 0.10
Matches are distributed among these distances:
104 4 0.02
105 4 0.02
106 7 0.03
107 84 0.34
108 3 0.01
110 3 0.01
112 9 0.04
113 3 0.01
114 81 0.33
115 28 0.11
116 3 0.01
117 16 0.07
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (108 bp):
AAATTATATATTTTAATAAATTATATTATAATAATTATTTATTTATAGTATTATATATTATGATT
TTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATT
Found at i:21298358 original size:15 final size:13
Alignment explanation
Indices: 21298332--21298379 Score: 57
Period size: 12 Copynumber: 3.8 Consensus size: 13
21298322 TTATTAAATT
21298332 ATATATTTTAATA
1 ATATATTTTAATA
21298345 ATATA-TTTAATA
1 ATATATTTTAATA
21298357 ATAATTATTTT-A-A
1 AT-A-TATTTTAATA
21298370 ATATATTTTA
1 ATATATTTTA
21298380 TTATTATATA
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
11 6 0.19
12 10 0.32
13 9 0.29
14 3 0.10
15 3 0.10
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATATTTTAATA
Found at i:21298378 original size:55 final size:54
Alignment explanation
Indices: 21298105--21298507 Score: 177
Period size: 55 Copynumber: 7.2 Consensus size: 54
21298095 AAAGTGGGGG
* * * **
21298105 AAATTATATATTTTTATTAAATTATATCTAATAATAATTATTTTAAATTATATAGTATT
1 AAATTATATA-TTTTAAT-AA-TATATTTAATAATAATTATATTAAA--ATATTTTATT
* * * * * *
21298164 ATATATTAT-GATTTTAGTAA-ATTCATATAAGAATATTTAATATTAAGA-ATTTTATT
1 A-A-ATTATATATTTTAATAATA-T-ATTTAATAATAATT-ATATTAAAATATTTTATT
* * *
21298220 AAATTATATATTTTTAATAAATTATATTTAATAATTATTAT-TTATAGTA--TTA-T
1 AAATTATATA-TTTTAAT-AA-TATATTTAATAATAATTATATTAAAATATTTTATT
* * * * * * *
21298273 ATATTAT-GATTTTAGTAA-ATTCATATAAGAATATTTAATATTAAGA-ATTTTATT
1 AAATTATATATTTTAATAATA-T-ATTTAATAATAATT-ATATTAAAATATTTTATT
*
21298327 AAATTATATATTTTAATAATATATTTAATAATAATTATTTTAAATATATTTTATT
1 AAATTATATATTTTAATAATATATTTAATAATAATTATATTAAA-ATATTTTATT
* * * * * *
21298382 ATTATATATTATGATTTTAGTAA-ATTCATATAAGAATATTTAATATTAAGA-ATTTTATT
1 A-AAT-TA-TAT-ATTTTAATAATA-T-ATTTAATAATAATT-ATATTAAAATATTTTATT
* * *
21298441 AAATTATATATTTTAATTAAAATATATTTACTAATAATTATGTTAAAATA--TCATT
1 AAATTATATATTTTAA-T--AATATATTTAATAATAATTATATTAAAATATTTTATT
*
21298496 AAATTATTTATT
1 AAATTATATATT
21298508 ATTGATATTA
Statistics
Matches: 257, Mismatches: 53, Indels: 72
0.67 0.14 0.19
Matches are distributed among these distances:
48 1 0.00
49 1 0.00
50 12 0.05
51 9 0.04
52 4 0.02
53 16 0.06
54 27 0.11
55 45 0.18
56 31 0.12
57 29 0.11
58 23 0.09
59 34 0.13
60 14 0.05
61 11 0.04
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.51
Consensus pattern (54 bp):
AAATTATATATTTTAATAATATATTTAATAATAATTATATTAAAATATTTTATT
Found at i:21298420 original size:114 final size:116
Alignment explanation
Indices: 21298258--21298491 Score: 402
Period size: 114 Copynumber: 2.0 Consensus size: 116
21298248 TAATAATTAT
21298258 TATTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
1 TATTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
*
21298323 TATTAAATTATATATTTTAA-T-AATATATTTAATAATAATTATTTTAAATA
66 TATTAAATTATATATTTTAATTAAATATATTTAATAATAATTATGTTAAA-A
*
21298373 TATTT-TATTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
1 TATTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
*
21298437 TATTAAATTATATATTTTAATTAAAATATATTTACTAATAATTATGTTAAAA
66 TATTAAATTATATATTTTAATT-AAATATATTTAATAATAATTATGTTAAAA
21298489 TAT
1 TAT
21298492 CATTAAATTA
Statistics
Matches: 113, Mismatches: 3, Indels: 5
0.93 0.02 0.04
Matches are distributed among these distances:
114 78 0.69
115 6 0.05
116 4 0.04
117 25 0.22
ACGTcount: A:0.44, C:0.01, G:0.04, T:0.50
Consensus pattern (116 bp):
TATTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTT
TATTAAATTATATATTTTAATTAAATATATTTAATAATAATTATGTTAAAA
Found at i:21298459 original size:18 final size:17
Alignment explanation
Indices: 21298433--21298467 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
21298423 AATATTAAGA
*
21298433 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
21298450 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
21298468 TTACTAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:21298465 original size:38 final size:38
Alignment explanation
Indices: 21298309--21298465 Score: 103
Period size: 38 Copynumber: 4.1 Consensus size: 38
21298299 AAGAATATTT
21298309 AATATTAAGAATTTTATTAAATTATATATTTTAA-TAA
1 AATATTAAGAATTTTATTAAATTATATATTTTAATTAA
* * * *
21298346 TATATTTAATAATAATTATTTTAA--ATATATTTT-ATTATTA
1 AATA-TTAAGAAT-TTTA-TTAAATTATATATTTTAATTA--A
* * * ** **
21298386 TATATTATG-ATTTTAGTAAATTCATATA--AGAATATTT
1 AATATTAAGAATTTTATTAAATT-ATATATTTTAAT-TAA
21298423 AATATTAAGAATTTTATTAAATTATATATTTTAATTAA
1 AATATTAAGAATTTTATTAAATTATATATTTTAATTAA
21298461 AATAT
1 AATAT
21298466 ATTTACTAAT
Statistics
Matches: 86, Mismatches: 20, Indels: 27
0.65 0.15 0.20
Matches are distributed among these distances:
36 3 0.03
37 19 0.22
38 40 0.47
39 15 0.17
40 9 0.10
ACGTcount: A:0.45, C:0.01, G:0.03, T:0.51
Consensus pattern (38 bp):
AATATTAAGAATTTTATTAAATTATATATTTTAATTAA
Found at i:21298717 original size:45 final size:44
Alignment explanation
Indices: 21298624--21298721 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 44
21298614 CTATTACACC
*
21298624 TCCATTTCATTCAACCAAACACAAGAATACTATTACGCCTCTAT
1 TCCATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAT
* *
21298668 TCCATTACATTCAACCAAACA-ATTA-AATTGCTATTATGCCTCTAT
1 TCCATTACATTCAACCAAACACA--AGAA-TACTATTACGCCTCTAT
21298713 TCCATTACA
1 TCCATTACA
21298722 CCTCTATTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
43 1 0.02
44 22 0.46
45 25 0.52
ACGTcount: A:0.36, C:0.28, G:0.04, T:0.33
Consensus pattern (44 bp):
TCCATTACATTCAACCAAACACAAGAATACTATTACGCCTCTAT
Found at i:21299846 original size:125 final size:123
Alignment explanation
Indices: 21299523--21299866 Score: 589
Period size: 123 Copynumber: 2.8 Consensus size: 123
21299513 CGAGTTGATG
*
21299523 TTTCTGAGCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
1 TTTCTGACCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
21299588 CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATATAAGAAATAATTTTTTTGACT
66 CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATATAAGAAATAATTTTTTTGACT
* *
21299646 TTTCTGACAAAATAGTATAAAATCACTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
1 TTTCTGACCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
* *
21299711 CGGCCTCGTGGACTCGCTTTTGCTATAGTAGGTCATGTAAGAAATAATTTTTTTTTGACT
66 CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATATAAGAAATAA--TTTTTTTGACT
* *
21299771 TTTCTGACCAAATAGTATAAAATCGCTTCTAGCAGGATGCTATTTGAGAAGAATGTGTGAAATCG
1 TTTCTGACCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
* *
21299836 CGGCCTCGTGGGCGCGCTTTTGCTACAGTAG
66 CGGCCTCGTGGACGCGCTTTTGCTATAGTAG
21299867 CATGTTTGGG
Statistics
Matches: 207, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
123 107 0.52
125 100 0.48
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.34
Consensus pattern (123 bp):
TTTCTGACCAAATAGTATAAAATCGCTTTTAGCAGGATGCTATTTGAGAAGAATTTGTGAAATCG
CGGCCTCGTGGACGCGCTTTTGCTATAGTAGGTCATATAAGAAATAATTTTTTTGACT
Found at i:21300258 original size:19 final size:18
Alignment explanation
Indices: 21300234--21300377 Score: 113
Period size: 19 Copynumber: 7.7 Consensus size: 18
21300224 TCAAATTATA
*
21300234 TAAAATTATATATGGTTAG
1 TAAAATTATAAAT-GTTAG
21300253 TAAAATTATCAAAT-TATA-
1 TAAAATTAT-AAATGT-TAG
21300271 TAAAATTATTAAA-GTTTAG
1 TAAAATTA-TAAATG-TTAG
21300290 TAAAATTATCAAAT-TATA-
1 TAAAATTAT-AAATGT-TAG
*
21300308 TAAAATTATTAAAGGTTAG
1 TAAAATTA-TAAATGTTAG
21300327 TAAAATTATCAAAT-TATA-
1 TAAAATTAT-AAATGT-TAG
21300345 TAAAATTATAAATGGTTAG
1 TAAAATTATAAAT-GTTAG
21300364 TAAAATTATTAAAT
1 TAAAATTA-TAAAT
21300378 TATATAAAAT
Statistics
Matches: 104, Mismatches: 3, Indels: 35
0.73 0.02 0.25
Matches are distributed among these distances:
17 4 0.04
18 42 0.40
19 50 0.48
20 8 0.08
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.40
Consensus pattern (18 bp):
TAAAATTATAAATGTTAG
Found at i:21300266 original size:37 final size:37
Alignment explanation
Indices: 21300224--21300388 Score: 271
Period size: 37 Copynumber: 4.5 Consensus size: 37
21300214 TTGTATTAAC
*
21300224 TCAAATTATATAAAATTA-TATATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATTA-AAGGTTAGTAAAATTA
*
21300261 TCAAATTATATAAAATTATTAAAGTTTAGTAAAATTA
1 TCAAATTATATAAAATTATTAAAGGTTAGTAAAATTA
21300298 TCAAATTATATAAAATTATTAAAGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATTAAAGGTTAGTAAAATTA
21300335 TCAAATTATATAAAATTA-TAAATGGTTAGTAAAATTA
1 TCAAATTATATAAAATTATTAAA-GGTTAGTAAAATTA
*
21300372 TTAAATTATATAAAATT
1 TCAAATTATATAAAATT
21300389 GGGTTAGGGT
Statistics
Matches: 122, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
36 4 0.03
37 116 0.95
38 2 0.02
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.40
Consensus pattern (37 bp):
TCAAATTATATAAAATTATTAAAGGTTAGTAAAATTA
Found at i:21300380 original size:27 final size:25
Alignment explanation
Indices: 21300255--21300356 Score: 55
Period size: 27 Copynumber: 3.8 Consensus size: 25
21300245 ATGGTTAGTA
21300255 AAATTATCAAAT-TATATAAAATTATT
1 AAATTAT-AAATAT-TATAAAATTATT
*
21300281 AAAGTTTAGTAAA-ATTATCAAATTATAT
1 AAA--TTA-TAAATATTATAAAATTAT-T
** *
21300309 AAAATTATTAAAGGTTAGTAAAATTATC
1 -AAATTA-TAAATATTA-TAAAATTATT
*
21300337 AAATTATATAAAATTATAAA
1 AAATTATA-AATATTATAAA
21300357 TGGTTAGTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 18
0.71 0.08 0.21
Matches are distributed among these distances:
26 9 0.15
27 28 0.47
28 11 0.18
29 12 0.20
ACGTcount: A:0.54, C:0.03, G:0.05, T:0.38
Consensus pattern (25 bp):
AAATTATAAATATTATAAAATTATT
Found at i:21300424 original size:29 final size:28
Alignment explanation
Indices: 21300385--21301149 Score: 946
Period size: 29 Copynumber: 26.6 Consensus size: 28
21300375 AATTATATAA
21300385 AATTGGGTTAGGGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
*
21300413 AAGTTTGGTTAGGGTTAGGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
21300442 GAATTGGGTTAGGGTTAGGGTTAGGGTTTTTAATT
1 -AA-----TT-GGGTTAGGGTTAGGGTTTTTAATT
*
21300477 AAGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
*
21300506 AAGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
21300535 AAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
21300564 GAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
21300593 AA----GTTA-GGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
21300616 GAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
21300645 AA----ATTA-GGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
* * *
21300668 AAGTTAGGTTAGGGTAAAGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
21300697 GAATTGGGTTAGGGTTAGGGTTAAGGTTT--TT
1 -AATTGGGTTAGGGTTAGGGTT----TTTAATT
***
21300728 AATTAAATT-GGGTTAGGGTTTTTAATT
1 AATTGGGTTAGGGTTAGGGTTTTTAATT
*
21300755 GAATTGGGTTAGGGTTAAGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
21300784 AAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
* *
21300813 AAGTTAGGTTAGGGTTAGGGCTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
*
21300842 GAATTGGGTTAGGGTTAGAGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
21300871 AAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
21300900 GAATTGGGTTAGGGTTAGAGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
21300929 AAATTGGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
21300958 AAGTTAGGTTAGGGTTAGGG-TTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
*
21300986 GAATTGGGTTAGAGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
21301015 AAATTTGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
21301044 GAATTGGGTTACGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
*
21301073 AAGTTAGGTTAGGGTTAGGGTTTTTAATT
1 AA-TTGGGTTAGGGTTAGGGTTTTTAATT
*
21301102 GAATTAGGTTAGGGTTAGGGTTTTTAATT
1 -AATTGGGTTAGGGTTAGGGTTTTTAATT
21301131 AAATTGGGTTAGGGTTAGG
1 -AATTGGGTTAGGGTTAGG
21301150 AATAAACTTC
Statistics
Matches: 656, Mismatches: 45, Indels: 71
0.85 0.06 0.09
Matches are distributed among these distances:
23 36 0.05
24 9 0.01
25 3 0.00
27 2 0.00
28 48 0.07
29 506 0.77
30 19 0.03
31 2 0.00
33 3 0.00
34 5 0.01
35 23 0.04
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (28 bp):
AATTGGGTTAGGGTTAGGGTTTTTAATT
Found at i:21300740 original size:23 final size:23
Alignment explanation
Indices: 21300714--21300799 Score: 91
Period size: 23 Copynumber: 3.5 Consensus size: 23
21300704 GTTAGGGTTA
21300714 GGGTTAAGGTTTTTAATTAAATT
1 GGGTTAAGGTTTTTAATTAAATT
* *
21300737 GGGTTAGGGTTTTTAATTGAATTGGGTT
1 GGGTTAAGGTTTTTAATT-AA----ATT
21300765 AGGGTTAAGGTTTTTAATTAAATT
1 -GGGTTAAGGTTTTTAATTAAATT
*
21300789 GGGTTAGGGTT
1 GGGTTAAGGTT
21300800 AGGGTTTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
23 27 0.52
24 4 0.08
28 4 0.08
29 17 0.33
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.45
Consensus pattern (23 bp):
GGGTTAAGGTTTTTAATTAAATT
Found at i:21303568 original size:22 final size:22
Alignment explanation
Indices: 21303537--21303683 Score: 109
Period size: 22 Copynumber: 6.4 Consensus size: 22
21303527 AAATATGGAT
21303537 TTGAGAGAATTTTAGAAGGAAA
1 TTGAGAGAATTTTAGAAGGAAA
* *
21303559 TTAAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTAGAAGGAAA
* * * *
21303581 TTGAGAGGAAATTGAAATTAAATATGGAT
1 TTGAGA-G-AATT----TTAGA-AGGAAA
21303610 TTGAGAGAATTTTAGAAGGAAA
1 TTGAGAGAATTTTAGAAGGAAA
* * *
21303632 TTAAGAGAATTTTGGAAAGAAA
1 TTGAGAGAATTTTAGAAGGAAA
*
21303654 TTGAGAGGAA-TTGAG-AGGAAA
1 TTGAGA-GAATTTTAGAAGGAAA
21303675 TCTGAGAGA
1 T-TGAGAGA
21303684 GGATTTGTTT
Statistics
Matches: 97, Mismatches: 19, Indels: 19
0.72 0.14 0.14
Matches are distributed among these distances:
21 8 0.08
22 60 0.62
23 8 0.08
24 4 0.04
27 4 0.04
28 4 0.04
29 9 0.09
ACGTcount: A:0.45, C:0.01, G:0.28, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTTAGAAGGAAA
Found at i:21303578 original size:73 final size:73
Alignment explanation
Indices: 21303501--21303667 Score: 309
Period size: 73 Copynumber: 2.3 Consensus size: 73
21303491 TATTTTAAAA
21303501 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
21303566 AATTTTGG
66 AATTTTGG
*
21303574 AAGGAAATTGAGAGGAAATTGAAATTAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
1 AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
21303639 AATTTTGG
66 AATTTTGG
*
21303647 AAAGAAATTGAGAGG-AATTGA
1 AAGGAAATTGAGAGGAAATTGA
21303668 GAGGAAATCT
Statistics
Matches: 92, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
72 6 0.07
73 86 0.93
ACGTcount: A:0.46, C:0.01, G:0.26, T:0.27
Consensus pattern (73 bp):
AAGGAAATTGAGAGGAAATTGAAATCAAATATGGATTTGAGAGAATTTTAGAAGGAAATTAAGAG
AATTTTGG
Found at i:21303682 original size:12 final size:11
Alignment explanation
Indices: 21303650--21303682 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
21303640 ATTTTGGAAA
21303650 GAAATTGAGAG
1 GAAATTGAGAG
21303661 G-AATTGAGAG
1 GAAATTGAGAG
21303671 GAAATCTGAGAG
1 GAAAT-TGAGAG
21303683 AGGATTTGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 4 0.20
12 6 0.30
ACGTcount: A:0.42, C:0.03, G:0.36, T:0.18
Consensus pattern (11 bp):
GAAATTGAGAG
Done.