Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 72 of 173
Found at i:22115006 original size:22 final size:22
Alignment explanation
Indices: 22114971--22115023 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
22114961 GAACGGTAAT
*
22114971 GATACCATCTATGAGAAATATC
1 GATACCATCCATGAGAAATATC
*
22114993 GATACTATCCATGAGAAATATC
1 GATACCATCCATGAGAAATATC
22115015 GATACCATC
1 GATACCATC
22115024 GAATGAGTAT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.40, C:0.21, G:0.13, T:0.26
Consensus pattern (22 bp):
GATACCATCCATGAGAAATATC
Found at i:22118795 original size:18 final size:17
Alignment explanation
Indices: 22118769--22118804 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
22118759 GGTGCTCATG
22118769 GGCCAGACGGCCCGGCCC
1 GGCCAGACGGCCC-GCCC
*
22118787 GGCCCGACGGCCCGCCC
1 GGCCAGACGGCCCGCCC
22118804 G
1 G
22118805 AAATATGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.08, C:0.53, G:0.39, T:0.00
Consensus pattern (17 bp):
GGCCAGACGGCCCGCCC
Found at i:22120607 original size:30 final size:31
Alignment explanation
Indices: 22120568--22120627 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 31
22120558 GGAGATGGGA
*
22120568 TGGGAAGGGAATAAAAGTTTTAGGGG-AAAAG
1 TGGGAAGGGAATAAAAATTTT-GGGGCAAAAG
*
22120599 TGGG-AGGGAGTAAAAATTTTGGGGCAAAA
1 TGGGAAGGGAATAAAAATTTTGGGGCAAAA
22120628 TAAATTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 4 0.15
30 18 0.69
31 4 0.15
ACGTcount: A:0.40, C:0.02, G:0.38, T:0.20
Consensus pattern (31 bp):
TGGGAAGGGAATAAAAATTTTGGGGCAAAAG
Found at i:22120937 original size:9 final size:9
Alignment explanation
Indices: 22120920--22120950 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22120910 TCGAGTTGAT
22120920 TCGAATAAC
1 TCGAATAAC
*
22120929 TCGATTAAC
1 TCGAATAAC
22120938 TCGAATAAC
1 TCGAATAAC
22120947 TCGA
1 TCGA
22120951 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:22123583 original size:18 final size:18
Alignment explanation
Indices: 22123568--22123603 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
22123558 GGTTTGAATT
22123568 ATTGGAACTTCATGAAGA
1 ATTGGAACTTCATGAAGA
22123586 ATTGGAACTTCATGAAGA
1 ATTGGAACTTCATGAAGA
22123604 CTTATTCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.22, T:0.28
Consensus pattern (18 bp):
ATTGGAACTTCATGAAGA
Found at i:22123587 original size:21 final size:21
Alignment explanation
Indices: 22123563--22123609 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 21
22123553 TTTTGGGTTT
22123563 GAATTATTGGAACTTCATGAA
1 GAATTATTGGAACTTCATGAA
22123584 G-A--ATTGGAACTTCATGAA
1 GAATTATTGGAACTTCATGAA
*
22123602 GACTTATT
1 GAATTATT
22123610 CTTTCAACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
18 17 0.77
20 1 0.05
21 4 0.18
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (21 bp):
GAATTATTGGAACTTCATGAA
Found at i:22130904 original size:26 final size:27
Alignment explanation
Indices: 22130863--22130920 Score: 109
Period size: 26 Copynumber: 2.2 Consensus size: 27
22130853 CCCCTTACCC
22130863 GTATTCCTTACCGGAACAGAGTATGAG
1 GTATTCCTTACCGGAACAGAGTATGAG
22130890 GTATTCC-TACCGGAACAGAGTATGAG
1 GTATTCCTTACCGGAACAGAGTATGAG
22130916 GTATT
1 GTATT
22130921 ACTAAATTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 24 0.77
27 7 0.23
ACGTcount: A:0.29, C:0.17, G:0.26, T:0.28
Consensus pattern (27 bp):
GTATTCCTTACCGGAACAGAGTATGAG
Found at i:22132145 original size:27 final size:27
Alignment explanation
Indices: 22132113--22132164 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
22132103 CCGCTGAATC
*
22132113 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACATAGCAACCCCTCG
22132140 GGGGAATCAGCACATAGCAACCCCT
1 GGGGAATCAGCACATAGCAACCCCT
22132165 TTCATTTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.25, T:0.13
Consensus pattern (27 bp):
GGGGAATCAGCACATAGCAACCCCTCG
Found at i:22132323 original size:105 final size:104
Alignment explanation
Indices: 22132079--22132445 Score: 602
Period size: 101 Copynumber: 3.6 Consensus size: 104
22132069 TAACCGTTAT
* ** *
22132079 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
22132144 AATCAGCACATAGCAA-CCCCTTT--CATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
22132180 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
22132245 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
22132285 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTC-GGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
22132349 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
* * **
22132388 TGGTGGATCA-CGCACATAGCACCACC-ATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCT
22132446 TTATATACAA
Statistics
Matches: 253, Mismatches: 8, Indels: 9
0.94 0.03 0.03
Matches are distributed among these distances:
101 77 0.30
102 33 0.13
103 44 0.17
104 26 0.10
105 73 0.29
ACGTcount: A:0.30, C:0.30, G:0.21, T:0.19
Consensus pattern (104 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATA
Found at i:22132348 original size:26 final size:26
Alignment explanation
Indices: 22132318--22132368 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22132308 ACCAATGAAC
*
22132318 CGGGGAATCAGCACTTAGCAACCCCT
1 CGGGGAATCAGCACATAGCAACCCCT
22132344 CGGGGAATCAGCACATAGCAACCCC
1 CGGGGAATCAGCACATAGCAACCCC
22132369 CTTTCACATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.35, G:0.24, T:0.12
Consensus pattern (26 bp):
CGGGGAATCAGCACATAGCAACCCCT
Found at i:22132806 original size:29 final size:29
Alignment explanation
Indices: 22132773--22132836 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
22132763 TAATCCACCA
22132773 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
22132802 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
22132832 CCCAA
1 CCCAA
22132837 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:22132810 original size:30 final size:30
Alignment explanation
Indices: 22132780--22132836 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22132770 CCACCCAACT
22132780 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
22132809 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
22132837 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:22139773 original size:27 final size:26
Alignment explanation
Indices: 22139694--22139777 Score: 89
Period size: 30 Copynumber: 3.0 Consensus size: 26
22139684 CACCACTGAA
* *
22139694 TCGGGGAATCATCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
22139720 TC-GGGAATCAGGCATGCACTTAGCAACCCC
1 TCGGGGAATCA-GCA--CA--TAGCAACCCC
22139750 TCGGGGGAATCAGCACATAGCAACCCC
1 TC-GGGGAATCAGCACATAGCAACCCC
22139777 T
1 T
22139778 TTCACATTTC
Statistics
Matches: 49, Mismatches: 2, Indels: 13
0.77 0.03 0.20
Matches are distributed among these distances:
25 8 0.16
26 4 0.08
27 11 0.22
28 1 0.02
29 2 0.04
30 12 0.24
31 3 0.06
32 8 0.16
ACGTcount: A:0.27, C:0.33, G:0.23, T:0.17
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:22139954 original size:26 final size:26
Alignment explanation
Indices: 22139924--22139975 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
22139914 CACCAATGAA
*
22139924 TCGGGGAATCAGCACTTAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
22139950 TCGGGGAATCAGCACATAGCAACCCC
1 TCGGGGAATCAGCACATAGCAACCCC
22139976 CTTTCACATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.35, G:0.23, T:0.13
Consensus pattern (26 bp):
TCGGGGAATCAGCACATAGCAACCCC
Found at i:22139965 original size:102 final size:102
Alignment explanation
Indices: 22139735--22140053 Score: 533
Period size: 102 Copynumber: 3.2 Consensus size: 102
22139725 AATCAGGCAT
22139735 GCACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAA-CCCCTTTCACATTTCAAAGATATGGT
1 GCACTTAGCAACCCCTC-GGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGT
*
22139799 GGATATCGCACTTAG---CACCAATGAA-C-CGGAATCA
65 GGATA-CGCACTTAGCACCACCAATGAATCGGGGAATCA
22139833 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
22139898 GATACGCACTTAGCACCACCAATGAATCGGGGAATCA
66 GATACGCACTTAGCACCACCAATGAATCGGGGAATCA
22139935 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
1 GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
*
22140000 GATCACGCACATAGCACCACCAATGAATCGGGGAATCA
66 GAT-ACGCACTTAGCACCACCAATGAATCGGGGAATCA
**
22140038 GCACACAGCAACCCCT
1 GCACTTAGCAACCCCT
22140054 TTATATACAA
Statistics
Matches: 210, Mismatches: 4, Indels: 9
0.94 0.02 0.04
Matches are distributed among these distances:
97 29 0.14
98 48 0.23
100 10 0.05
101 1 0.00
102 75 0.36
103 47 0.22
ACGTcount: A:0.32, C:0.30, G:0.19, T:0.19
Consensus pattern (102 bp):
GCACTTAGCAACCCCTCGGGGAATCAGCACATAGCAACCCCCTTTCACATTTCAAAGATATGGTG
GATACGCACTTAGCACCACCAATGAATCGGGGAATCA
Found at i:22140412 original size:29 final size:29
Alignment explanation
Indices: 22140379--22140442 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
22140369 TAATCCACCA
22140379 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
22140408 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
22140438 CCCAA
1 CCCAA
22140443 GCTGGAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:22140416 original size:30 final size:30
Alignment explanation
Indices: 22140386--22140442 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
22140376 CCACCCAACT
22140386 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
22140415 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
22140443 GCTGGAAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:22145692 original size:20 final size:21
Alignment explanation
Indices: 22145659--22145716 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
22145649 ATCTAATAAC
22145659 GAGCTC-AATGAGCTGAA-TT
1 GAGCTCGAATGAGCTGAACTT
**
22145678 GAGCTCGTGTGAGCT-AACTT
1 GAGCTCGAATGAGCTGAACTT
22145698 GAGCTCGAATGAGCTGAAC
1 GAGCTCGAATGAGCTGAAC
22145717 CACATGGAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 8 0.25
20 21 0.66
21 3 0.09
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (21 bp):
GAGCTCGAATGAGCTGAACTT
Found at i:22147515 original size:17 final size:18
Alignment explanation
Indices: 22147479--22147518 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
22147469 TATTCTTTCG
*
22147479 TTTCTTTTTCAATATCTT
1 TTTCTTTTCCAATATCTT
*
22147497 TTTCTTTTCCAAT-TTTT
1 TTTCTTTTCCAATATCTT
22147514 TTTCT
1 TTTCT
22147519 CAATCTCAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 8 0.40
18 12 0.60
ACGTcount: A:0.12, C:0.17, G:0.00, T:0.70
Consensus pattern (18 bp):
TTTCTTTTCCAATATCTT
Found at i:22147549 original size:18 final size:18
Alignment explanation
Indices: 22147528--22147662 Score: 59
Period size: 18 Copynumber: 7.4 Consensus size: 18
22147518 TCAATCTCAA
22147528 TTTCTTTTTCAATTTTCT
1 TTTCTTTTTCAATTTTCT
*
22147546 TTTCTTCGTTTTC-TTTTTCT
1 TTTC-T--TTTTCAATTTTCT
** * *
22147566 CTCACTTCTTCGA-TTTCT
1 -TTTCTTTTTCAATTTTCT
*
22147584 TGTTC-TTTTGAA-TTTCTT
1 T-TTCTTTTTCAATTTTC-T
22147602 TTTCTTTTTC-ATTTTCT
1 TTTCTTTTTCAATTTTCT
* *
22147619 ATTTC-TTTTCCACTTTCT
1 -TTTCTTTTTCAATTTTCT
*
22147637 ATTTCTTTTT-ATTTTTCTT
1 -TTTCTTTTTCAATTTTC-T
22147656 TTTCTTT
1 TTTCTTT
22147663 ATTTTCGTTT
Statistics
Matches: 89, Mismatches: 15, Indels: 26
0.68 0.12 0.20
Matches are distributed among these distances:
17 19 0.21
18 50 0.56
19 6 0.07
20 7 0.08
21 7 0.08
ACGTcount: A:0.08, C:0.19, G:0.03, T:0.70
Consensus pattern (18 bp):
TTTCTTTTTCAATTTTCT
Found at i:22147616 original size:7 final size:6
Alignment explanation
Indices: 22147596--22147662 Score: 71
Period size: 6 Copynumber: 11.2 Consensus size: 6
22147586 TTCTTTTGAA
* * * ** *
22147596 TTTCTT TTTCTT TTTCAT TTTCTA TTTCTT TTCCAC TTTCTA TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
*
22147644 TTTATT TTTCTT TTTCTT T
1 TTTCTT TTTCTT TTTCTT T
22147663 ATTTTCGTTT
Statistics
Matches: 48, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
6 48 1.00
ACGTcount: A:0.07, C:0.18, G:0.00, T:0.75
Consensus pattern (6 bp):
TTTCTT
Found at i:22151038 original size:51 final size:51
Alignment explanation
Indices: 22150977--22151316 Score: 281
Period size: 51 Copynumber: 6.7 Consensus size: 51
22150967 CGATGAACAA
* *
22150977 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGTCAC
* * * * * * *
22151028 ATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-CAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTG-GTCAC
* * * *
22151079 GTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTA-TGGTTAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TATTGGTCAC
* * * * * *
22151130 ATGTGTGGTACTAAGTGAAGGCTGCTA--TGGATACTGA-AAAGCT-TTGGTAAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTAT-C-GATAAA--TATTGGTCAC
* * * *
22151181 GTATGTAGTACTATGTGAAGGCTACTACATG-AGCCG-TAAA-ACTTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTA-TCGATAAATA-TTGGTCAC
* * *
22151231 GTGTGTAGTACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAAATATTGGTCAC
22151280 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
22151317 ATGATAAAAA
Statistics
Matches: 231, Mismatches: 42, Indels: 33
0.75 0.14 0.11
Matches are distributed among these distances:
49 44 0.19
50 49 0.21
51 132 0.57
52 4 0.02
53 2 0.01
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.30
Consensus pattern (51 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGTCAC
Found at i:22151158 original size:102 final size:100
Alignment explanation
Indices: 22150977--22151315 Score: 366
Period size: 102 Copynumber: 3.4 Consensus size: 100
22150967 CGATGAACAA
* *
22150977 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTACTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACT-ATGGTCACATGTGTAGTACTA
*
22151041 AGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAGCAC
65 AGTGAAGGCTACTATGTGTACTGA-AAG-TTTGAGCAC
* * * *
22151079 GTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTACATGTGTGGTACTAA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTACTAA
* *
22151144 GTGAAGGCTGCTATG-GATACTGAAAAGCTTTG-GTAAC
66 GTGAAGGCTACTATGTG-TACTG-AAAG-TTTGAG-CAC
* * * * * *
22151181 GTATGTAGTACTATGTGAAGGCTACTACATG-AGCCGTAAAACT-TGATCACGTGTGTAGTACTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGT-AAACTATGGTCACATGTGTAGTACTA
* * * ** *
22151244 TGTGAAGGCTACTACGTGAACTGTAAA-ACTGATCAC
65 AGTGAAGGCTACTATGTGTACTG-AAAGTTTGAGCAC
22151280 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG
22151316 AATGATAAAA
Statistics
Matches: 198, Mismatches: 31, Indels: 18
0.80 0.13 0.07
Matches are distributed among these distances:
99 33 0.17
100 2 0.01
101 42 0.21
102 119 0.60
103 2 0.01
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.30
Consensus pattern (100 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTACTAA
GTGAAGGCTACTATGTGTACTGAAAGTTTGAGCAC
Found at i:22158654 original size:51 final size:50
Alignment explanation
Indices: 22158593--22158882 Score: 259
Period size: 51 Copynumber: 5.7 Consensus size: 50
22158583 CGATGAACAA
*
22158593 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-ATGGTCAC
* * * * * * *
22158644 ATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-CAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAA-ATATG-GTCAC
* * * *
22158695 GTGTGTAGTACTTTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TATGGTCAC
* * * * * * *
22158746 ATGTGTGGTACTAAGTGAAGGCTGCTATG-GATACCGA-AAAGCTTTGGTCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTG-TATCGATAAA--TATGGTCAC
* * *
22158797 GTATGTAGTACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTGATCAC
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAAATA-TGGTCAC
22158846 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
22158883 ATGATAAAAA
Statistics
Matches: 186, Mismatches: 41, Indels: 25
0.74 0.16 0.10
Matches are distributed among these distances:
49 37 0.20
50 9 0.05
51 137 0.74
52 3 0.02
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (50 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATGGTCAC
Found at i:22158774 original size:102 final size:102
Alignment explanation
Indices: 22158593--22158872 Score: 347
Period size: 102 Copynumber: 2.8 Consensus size: 102
22158583 CGATGAACAA
*
22158593 GTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAA
* *
22158658 GTGAAGGCTACTATGTG-TACCGAGAAGTTTTGAG-CAC
66 GTGAAGGCTACTATG-GATACCGAAAAGCTTTG-GTCAC
* * * * *
22158695 GTGTGTAGTACTTTGTGAAAGCTACTACGTGTATCGGTAAACT-ATGGTTACATGTGTGGTACTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTACTA
*
22158759 AGTGAAGGCTGCTATGGATACCGAAAAGCTTTGGTCAC
65 AGTGAAGGCTACTATGGATACCGAAAAGCTTTGGTCAC
* * * * *
22158797 GTATGTAGTACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTGATCACGTGTGTAGTACTA
1 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAAATAATGGTCACATGTGTAGTACTA
*
22158859 TGTGAAGGCTACTA
65 AGTGAAGGCTACTA
22158873 CGTGTATCGA
Statistics
Matches: 154, Mismatches: 19, Indels: 12
0.83 0.10 0.06
Matches are distributed among these distances:
100 28 0.18
101 8 0.05
102 117 0.76
103 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (102 bp):
GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAA
GTGAAGGCTACTATGGATACCGAAAAGCTTTGGTCAC
Found at i:22161405 original size:20 final size:20
Alignment explanation
Indices: 22161374--22161430 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
22161364 ATCTAATAAC
22161374 GAGCTC-AATGAGCTAAATT
1 GAGCTCGAATGAGCTAAATT
** * * *
22161393 GAGCTCGTGTGAGTTGACTT
1 GAGCTCGAATGAGCTAAATT
22161413 GAGCTCGAATGAGCTAAA
1 GAGCTCGAATGAGCTAAA
22161431 CCACATGGAA
Statistics
Matches: 27, Mismatches: 10, Indels: 1
0.71 0.26 0.03
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (20 bp):
GAGCTCGAATGAGCTAAATT
Found at i:22165198 original size:50 final size:50
Alignment explanation
Indices: 22165081--22165327 Score: 244
Period size: 50 Copynumber: 4.8 Consensus size: 50
22165071 GATAATAACA
* * * * ** * * * *
22165081 TGCCAAAGCTATGTCCCAAACATAGTCTTACATGGGATGTTTCTTGTA-C
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* * **
22165130 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* ** * *
22165180 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
* *
22165230 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--A-GG
22165286 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
22165328 TTACCCATAT
Statistics
Matches: 162, Mismatches: 29, Indels: 7
0.82 0.15 0.04
Matches are distributed among these distances:
49 37 0.23
50 82 0.51
53 1 0.01
56 42 0.26
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATAGG
Found at i:22165247 original size:100 final size:104
Alignment explanation
Indices: 22165130--22165327 Score: 269
Period size: 100 Copynumber: 1.9 Consensus size: 104
22165120 TTTCTTGTAC
* * ** * *
22165130 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCAT-A-T-A-GGTGCCCATGCCA
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAACTAATGATGCCAATGCCA
*
22165191 TGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
66 TGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
*
22165230 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGC
1 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAA-CT-AATGATGCCAATGC
*
22165295 CATGTCCCAGACATGGTCTTACATGGGACCTCT
64 CATGTCCCAGACATGGTCTTACAGGGGACCTCT
22165328 TTACCCATAT
Statistics
Matches: 83, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
100 40 0.48
101 1 0.01
103 1 0.01
105 1 0.01
106 40 0.48
ACGTcount: A:0.23, C:0.29, G:0.22, T:0.26
Consensus pattern (104 bp):
TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAACTAATGATGCCAATGCCA
TGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:22174849 original size:6 final size:6
Alignment explanation
Indices: 22174840--22174868 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
22174830 TTTTTCTTTT
22174840 TCTCAC TCTCAC TCTCAC TCTCAC TCTCA
1 TCTCAC TCTCAC TCTCAC TCTCAC TCTCA
22174869 TTTTCTTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.48, G:0.00, T:0.34
Consensus pattern (6 bp):
TCTCAC
Found at i:22183848 original size:25 final size:24
Alignment explanation
Indices: 22183791--22183866 Score: 66
Period size: 24 Copynumber: 3.1 Consensus size: 24
22183781 ATGGGCTATA
22183791 TAACGGGAAGCT-CATAAGAGCC-T
1 TAACGGGAAGCTCCA-AAGAGCCAT
* * * *
22183814 AAATCAGGAAGTTCACAAAGAGCCTT
1 TAA-CGGGAAGCTC-CAAAGAGCCAT
*
22183840 TAACGGGAAGCTCCGAAGAGCCAT
1 TAACGGGAAGCTCCAAAGAGCCAT
22183864 TAA
1 TAA
22183867 TCAGAGTTCC
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
23 2 0.05
24 19 0.46
25 15 0.37
26 5 0.12
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.17
Consensus pattern (24 bp):
TAACGGGAAGCTCCAAAGAGCCAT
Found at i:22183909 original size:25 final size:25
Alignment explanation
Indices: 22183881--22183935 Score: 92
Period size: 25 Copynumber: 2.2 Consensus size: 25
22183871 AGTTCCAGAT
*
22183881 AGCCATATATCGGGAAGTTCAAGCG
1 AGCCATATATCAGGAAGTTCAAGCG
*
22183906 AGCCATATATTAGGAAGTTCAAGCG
1 AGCCATATATCAGGAAGTTCAAGCG
22183931 AGCCA
1 AGCCA
22183936 AATCGAGAAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.20
Consensus pattern (25 bp):
AGCCATATATCAGGAAGTTCAAGCG
Found at i:22186618 original size:11 final size:11
Alignment explanation
Indices: 22186602--22186635 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
22186592 AGGCATAAAG
22186602 ATGTTCACACC
1 ATGTTCACACC
*
22186613 ATGTTCA-GCC
1 ATGTTCACACC
22186623 ATGTTCACACC
1 ATGTTCACACC
22186634 AT
1 AT
22186636 ATGGCTCTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.26, C:0.32, G:0.12, T:0.29
Consensus pattern (11 bp):
ATGTTCACACC
Found at i:22189398 original size:25 final size:24
Alignment explanation
Indices: 22189370--22189416 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
22189360 GCCTAAATTA
* *
22189370 GGAAGTTCACAAAGAGCCTTTAACG
1 GGAAGCTC-CAAAGAGCCATTAACG
*
22189395 GGAAGCTCCGAAGAGCCATTAA
1 GGAAGCTCCAAAGAGCCATTAA
22189417 TCAGAAGTTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 12 0.63
25 7 0.37
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.17
Consensus pattern (24 bp):
GGAAGCTCCAAAGAGCCATTAACG
Found at i:22189450 original size:25 final size:25
Alignment explanation
Indices: 22189420--22189489 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
22189410 CCATTAATCA
* *
22189420 GAAGTTCCAGATAGCCATATATCGG
1 GAAGTTCAAGAGAGCCATATATCGG
* *
22189445 GAAGTTCAAGCGAGCCATATATTGG
1 GAAGTTCAAGAGAGCCATATATCGG
*
22189470 GAAGTTCAAGCGAGCCATAT
1 GAAGTTCAAGAGAGCCATAT
22189490 CAAGAAGCTC
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.23
Consensus pattern (25 bp):
GAAGTTCAAGAGAGCCATATATCGG
Found at i:22200392 original size:22 final size:22
Alignment explanation
Indices: 22200364--22200406 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
22200354 CATCTTTTCC
**
22200364 TTTTATTTTTCAAGATATTTAA
1 TTTTATTTCCCAAGATATTTAA
22200386 TTTTATTTCCCAAGATATTTA
1 TTTTATTTCCCAAGATATTTA
22200407 GACAAAAGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.09, G:0.05, T:0.56
Consensus pattern (22 bp):
TTTTATTTCCCAAGATATTTAA
Found at i:22205475 original size:37 final size:37
Alignment explanation
Indices: 22205420--22205501 Score: 137
Period size: 37 Copynumber: 2.2 Consensus size: 37
22205410 ACACATAATT
22205420 CTATACTTAGCTAAGACAACACTTTACTTAATCATAC
1 CTATACTTAGCTAAGACAACACTTTACTTAATCATAC
* * *
22205457 CTATACTTAGCTATGACAACACTTTACTTACTCATAT
1 CTATACTTAGCTAAGACAACACTTTACTTAATCATAC
22205494 CTATACTT
1 CTATACTT
22205502 TGCCAAATGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.34, C:0.24, G:0.05, T:0.37
Consensus pattern (37 bp):
CTATACTTAGCTAAGACAACACTTTACTTAATCATAC
Found at i:22205484 original size:21 final size:21
Alignment explanation
Indices: 22205423--22205486 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
22205413 CATAATTCTA
*
22205423 TACTTAGCTAAGACAACACTT
1 TACTTAGCTATGACAACACTT
*
22205444 TACTTA---AT--CATAC-CTA
1 TACTTAGCTATGACA-ACACTT
22205460 TACTTAGCTATGACAACACTT
1 TACTTAGCTATGACAACACTT
22205481 TACTTA
1 TACTTA
22205487 CTCATATCTA
Statistics
Matches: 33, Mismatches: 3, Indels: 14
0.66 0.06 0.28
Matches are distributed among these distances:
16 10 0.30
17 2 0.06
18 1 0.03
19 2 0.06
20 2 0.06
21 16 0.48
ACGTcount: A:0.36, C:0.23, G:0.06, T:0.34
Consensus pattern (21 bp):
TACTTAGCTATGACAACACTT
Found at i:22214807 original size:57 final size:57
Alignment explanation
Indices: 22214719--22214835 Score: 198
Period size: 57 Copynumber: 2.1 Consensus size: 57
22214709 CACACGCTCA
* ***
22214719 TGTGCTTAAACCGTGTACAAATCGAAAATAGGGTCACATGGTCGTGTCCCTAGGCCG
1 TGTGCTGAAACCGTGTACAAATCGAAAATAGGGTCACATAACCGTGTCCCTAGGCCG
22214776 TGTGCTGAAACCGTGTACAAATCGAAAATAGGGTCACATAACCGTGTCCCTAGGCCG
1 TGTGCTGAAACCGTGTACAAATCGAAAATAGGGTCACATAACCGTGTCCCTAGGCCG
22214833 TGT
1 TGT
22214836 AACTAACTAT
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (57 bp):
TGTGCTGAAACCGTGTACAAATCGAAAATAGGGTCACATAACCGTGTCCCTAGGCCG
Found at i:22215880 original size:13 final size:13
Alignment explanation
Indices: 22215857--22215926 Score: 86
Period size: 13 Copynumber: 5.3 Consensus size: 13
22215847 TCATACATCT
22215857 ATTTCCATATAACC
1 ATTT-CATATAACC
*
22215871 ACTTCATATAACC
1 ATTTCATATAACC
** *
22215884 ATTTCATGCAATC
1 ATTTCATATAACC
22215897 ATTTCATATAACC
1 ATTTCATATAACC
*
22215910 ATTTCGTATAACC
1 ATTTCATATAACC
22215923 ATTT
1 ATTT
22215927 GATTTAAATA
Statistics
Matches: 47, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
13 44 0.94
14 3 0.06
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (13 bp):
ATTTCATATAACC
Found at i:22215940 original size:39 final size:38
Alignment explanation
Indices: 22215856--22215942 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 38
22215846 TTCATACATC
*
22215856 TATTTCCATATAACCACTTCATATAACCATTTCATGCAA
1 TATTT-CATATAACCACTTCATATAACCATTTCATGAAA
* * * *
22215895 TCATTTCATATAACCATTTCGTATAACCATTTGATTTAAA
1 T-ATTTCATATAACCACTTCATATAACCATTTCA-TGAAA
22215935 TATTTCAT
1 TATTTCAT
22215943 TTAAACAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 33 0.80
40 8 0.20
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.41
Consensus pattern (38 bp):
TATTTCATATAACCACTTCATATAACCATTTCATGAAA
Found at i:22216715 original size:13 final size:13
Alignment explanation
Indices: 22216697--22216721 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22216687 TTTTGGTTCT
22216697 AAAGATGAAAAAG
1 AAAGATGAAAAAG
22216710 AAAGATGAAAAA
1 AAAGATGAAAAA
22216722 ATGATGGTGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.00, G:0.20, T:0.08
Consensus pattern (13 bp):
AAAGATGAAAAAG
Found at i:22216764 original size:18 final size:18
Alignment explanation
Indices: 22216741--22216779 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
22216731 GCTTCATTAA
*
22216741 ATTTTT-AATGTTTTATTC
1 ATTTTTAAAT-TTTAATTC
22216759 ATTTTTAAATTTTAATTC
1 ATTTTTAAATTTTAATTC
22216777 ATT
1 ATT
22216780 AATAATAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 16 0.84
19 3 0.16
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.64
Consensus pattern (18 bp):
ATTTTTAAATTTTAATTC
Found at i:22217114 original size:14 final size:14
Alignment explanation
Indices: 22217095--22217132 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
22217085 TTTAGGGACA
22217095 AACCATTTGTACCT
1 AACCATTTGTACCT
22217109 AACCATTTGTACCT
1 AACCATTTGTACCT
*
22217123 AACTATTTGT
1 AACCATTTGT
22217133 TCACTTAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (14 bp):
AACCATTTGTACCT
Found at i:22218209 original size:28 final size:28
Alignment explanation
Indices: 22218167--22218236 Score: 95
Period size: 28 Copynumber: 2.5 Consensus size: 28
22218157 TAGTACAGTA
*
22218167 TGGGCCTTAGACCAAAACAATAACAATG
1 TGGGCCTTAGCCCAAAACAATAACAATG
* * * *
22218195 TGGGCCTTAGCCCAATACAGTAATAGTG
1 TGGGCCTTAGCCCAAAACAATAACAATG
22218223 TGGGCCTTAGCCCA
1 TGGGCCTTAGCCCA
22218237 GTACAGTACA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.21
Consensus pattern (28 bp):
TGGGCCTTAGCCCAAAACAATAACAATG
Found at i:22218637 original size:27 final size:27
Alignment explanation
Indices: 22218576--22218809 Score: 224
Period size: 27 Copynumber: 8.7 Consensus size: 27
22218566 TCATCTCCTA
** * *
22218576 GGGGTATAACAGTCATTTTACCTTATG
1 GGGGTATTTCAGTCATTTTACCCTCTG
** *
22218603 GGGGTATTTCAGTCATTTTACTTTTTG
1 GGGGTATTTCAGTCATTTTACCCTCTG
* *
22218630 GGGGTATTTC-GATCATTTTACCCTTTT
1 GGGGTATTTCAG-TCATTTTACCCTCTG
* * * *
22218657 AGGGTATTTCGGTCATTTTACCATCCG
1 GGGGTATTTCAGTCATTTTACCCTCTG
*
22218684 GGGGTATTTCAGTTATTTTACCCTAC-G
1 GGGGTATTTCAGTCATTTTACCCT-CTG
* * *
22218711 GGGGTATTTTAGTCATTTGACCCTCTA
1 GGGGTATTTCAGTCATTTTACCCTCTG
* *
22218738 GGGGTATTTCAATCATTTTACCCTCTA
1 GGGGTATTTCAGTCATTTTACCCTCTG
*
22218765 GGGGTATTTC-GATCATTTTACCCTCTC
1 GGGGTATTTCAG-TCATTTTACCCTCTG
*
22218792 AGGGTATTTCAGTC-TTTT
1 GGGGTATTTCAGTCATTTT
22218810 GCCCACAAAT
Statistics
Matches: 175, Mismatches: 26, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
26 6 0.03
27 166 0.95
28 3 0.02
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTCTG
Found at i:22221524 original size:43 final size:42
Alignment explanation
Indices: 22221478--22221729 Score: 288
Period size: 43 Copynumber: 5.9 Consensus size: 42
22221468 AGCTAAAAGT
* *
22221478 CATGACCTTTAGCGGTGCTTCTCCCACAAACGCCGCTATAGAT
1 CATGACCTTTAGCGGCGCTT-TCCCACAAACGCCGCTATAGAA
* *
22221521 CATGACTTTTAGCGGCGCCTTTCCCACAAACGCCGCTATAGAT
1 CATGACCTTTAGCGGCG-CTTTCCCACAAACGCCGCTATAGAA
* ***
22221564 CATGACTTTTAGCGATACTTTTCCCACAAACGCCGCTATAGAA
1 CATGACCTTTAGCGGCGC-TTTCCCACAAACGCCGCTATAGAA
* * *
22221607 CATGAGCTTTAGCGGCGCTTTACCACAAACGCCGCTAAAGAA
1 CATGACCTTTAGCGGCGCTTTCCCACAAACGCCGCTATAGAA
* * * *
22221649 CATGACATTTAGCGTCGCTTTACCAACAAACGCCGCTAAAGAA
1 CATGACCTTTAGCGGCGCTTT-CCCACAAACGCCGCTATAGAA
* * **
22221692 CATGATCTTTAGCGGCACTTTTATCACAAACGCCGCTA
1 CATGACCTTTAGCGGCGC-TTTCCCACAAACGCCGCTA
22221730 AAAGTATGGT
Statistics
Matches: 180, Mismatches: 25, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
42 41 0.23
43 133 0.74
44 6 0.03
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (42 bp):
CATGACCTTTAGCGGCGCTTTCCCACAAACGCCGCTATAGAA
Found at i:22221653 original size:128 final size:129
Alignment explanation
Indices: 22221478--22221729 Score: 339
Period size: 128 Copynumber: 2.0 Consensus size: 129
22221468 AGCTAAAAGT
* * * * *
22221478 CATGACCTTTAGCGGTGCTTCTCCCACAAACGCCGCTATAGATCATGACTTTTAGCGGCGCCTTT
1 CATGACCTTTAGCGGCGCTTCTACCACAAACGCCGCTAAAGAACATGACATTTAGCGGCG-CTTT
* * * * *
22221543 -CCCACAAACGCCGCTATAGATCATGA-CTTTTAGCGATACTTTTCCCACAAACGCCGCTATAGA
65 ACCAACAAACGCCGCTAAAGAACATGATC-TTTAGCGACACTTTTACCACAAACGCCGCTATAGA
22221606 A
129 A
* *
22221607 CATGAGCTTTAGCGGCGCTT-TACCACAAACGCCGCTAAAGAACATGACATTTAGCGTCGCTTTA
1 CATGACCTTTAGCGGCGCTTCTACCACAAACGCCGCTAAAGAACATGACATTTAGCGGCGCTTTA
* *
22221671 CCAACAAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTTATCACAAACGCCGCTA
66 CCAACAAACGCCGCTAAAGAACATGATCTTTAGCGACACTTTTACCACAAACGCCGCTA
22221730 AAAGTATGGT
Statistics
Matches: 107, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
127 4 0.04
128 84 0.79
129 19 0.18
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (129 bp):
CATGACCTTTAGCGGCGCTTCTACCACAAACGCCGCTAAAGAACATGACATTTAGCGGCGCTTTA
CCAACAAACGCCGCTAAAGAACATGATCTTTAGCGACACTTTTACCACAAACGCCGCTATAGAA
Found at i:22221682 original size:85 final size:82
Alignment explanation
Indices: 22221478--22221731 Score: 310
Period size: 85 Copynumber: 3.0 Consensus size: 82
22221468 AGCTAAAAGT
* *
22221478 CATGACCTTTAGCGGTGCTTCTCCCACAAACGCCGCTATAGATCATGACTTTTAGCGGCGCCTTT
1 CATGACATTTAGC-GTGCTT-TCCCACAAACGCCGCTATAGAACATGAC-TTTAGCGGCG-CTTT
* * *
22221543 CCCACAAACGCCGCTATAGAT
62 ACCACAAACGCCGCTAAAGAA
* *
22221564 CATGACTTTTAGCGATACTTTTCCCACAAACGCCGCTATAGAACATGAGCTTTAGCGGCGCTTTA
1 CATGACATTTAGCG-TGC-TTTCCCACAAACGCCGCTATAGAACATGA-CTTTAGCGGCGCTTTA
22221629 CCACAAACGCCGCTAAAGAA
63 CCACAAACGCCGCTAAAGAA
* * *
22221649 CATGACATTTAGCGTCGCTTTACCAACAAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTT
1 CATGACATTTAGCGT-GCTTT-CCCACAAACGCCGCTATAGAACATGA-CTTTAGCGGCGC-TTT
*
22221714 ATCACAAACGCCGCTAAA
62 ACCACAAACGCCGCTAAA
22221732 AGTATGGTTC
Statistics
Matches: 149, Mismatches: 13, Indels: 12
0.86 0.07 0.07
Matches are distributed among these distances:
84 4 0.03
85 72 0.48
86 70 0.47
87 3 0.02
ACGTcount: A:0.29, C:0.30, G:0.17, T:0.24
Consensus pattern (82 bp):
CATGACATTTAGCGTGCTTTCCCACAAACGCCGCTATAGAACATGACTTTAGCGGCGCTTTACCA
CAAACGCCGCTAAAGAA
Found at i:22223861 original size:87 final size:86
Alignment explanation
Indices: 22223754--22223974 Score: 216
Period size: 86 Copynumber: 2.6 Consensus size: 86
22223744 TCAATCTTAC
* * * * ***
22223754 AACAGTTTATGTGAAACAAATTAGCAAAAATCAACT-ATTCATAGTTCATATATTTACCGGCAA-
1 AACAATTTATATGCAACAAATTAGCAAAAATCAA-TGACTCA-AGTTCATATATTTACCAAAAAT
*
22223817 TAGGGCTAAATCTTT-AAT-TTCTAT
64 TA-GACT-AATCTTTCAATATT-TAT
* * * *
22223841 AACGATTTATATGCAACAAATTAACAAAAATCAATGGCTCAAGTTCATGTATTTACCAAAAATTA
1 AACAATTTATATGCAACAAATTAGCAAAAATCAATGACTCAAGTTCATATATTTACCAAAAATTA
*
22223906 GACTAATTTTTCAATATTTAT
66 GACTAATCTTTCAATATTTAT
* * **
22223927 AACAACTTATATGCAACAAATTAGCAAAAATAAATGGTTCAAGTTCAT
1 AACAATTTATATGCAACAAATTAGCAAAAATCAATGACTCAAGTTCAT
22223975 GCGTTTACCA
Statistics
Matches: 112, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
85 6 0.05
86 70 0.62
87 36 0.32
ACGTcount: A:0.43, C:0.14, G:0.10, T:0.33
Consensus pattern (86 bp):
AACAATTTATATGCAACAAATTAGCAAAAATCAATGACTCAAGTTCATATATTTACCAAAAATTA
GACTAATCTTTCAATATTTAT
Found at i:22223937 original size:86 final size:86
Alignment explanation
Indices: 22223822--22224006 Score: 239
Period size: 86 Copynumber: 2.2 Consensus size: 86
22223812 GGCAATAGGG
* * *
22223822 CTAAATCTTT-AAT-TTCTATAACGATTTATATGCAACAAATTAACAAAAATCAATGGCTCAAGT
1 CTAAAT-TTTCAATATT-TATAACAACTTATATGCAACAAATTAACAAAAATAAATGGCTCAAGT
* **
22223885 TCATGTATTTACCAAAAATTAGA
64 TCATGCATTTACCAAAAACCAGA
* * *
22223908 CTAATTTTTCAATATTTATAACAACTTATATGCAACAAATTAGCAAAAATAAATGGTTCAAGTTC
1 CTAAATTTTCAATATTTATAACAACTTATATGCAACAAATTAACAAAAATAAATGGCTCAAGTTC
* *
22223973 ATGCGTTTACCAACAACCAGA
66 ATGCATTTACCAAAAACCAGA
22223994 CTAAATTTTCAAT
1 CTAAATTTTCAAT
22224007 TTTCAATTTT
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
85 3 0.04
86 80 0.94
87 2 0.02
ACGTcount: A:0.42, C:0.16, G:0.08, T:0.34
Consensus pattern (86 bp):
CTAAATTTTCAATATTTATAACAACTTATATGCAACAAATTAACAAAAATAAATGGCTCAAGTTC
ATGCATTTACCAAAAACCAGA
Found at i:22224118 original size:30 final size:30
Alignment explanation
Indices: 22224083--22224149 Score: 116
Period size: 30 Copynumber: 2.2 Consensus size: 30
22224073 TAAGGAGGTA
*
22224083 AAAAAATCATCATTTCAACAATTTACATAT
1 AAAAAATCATCATTTCAACAATTTACATAC
*
22224113 AAAAAATCATCATTTCAACAATTTACATGC
1 AAAAAATCATCATTTCAACAATTTACATAC
22224143 AAAAAAT
1 AAAAAAT
22224150 TAGCAAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.52, C:0.16, G:0.01, T:0.30
Consensus pattern (30 bp):
AAAAAATCATCATTTCAACAATTTACATAC
Found at i:22224514 original size:168 final size:168
Alignment explanation
Indices: 22224236--22224557 Score: 441
Period size: 168 Copynumber: 1.9 Consensus size: 168
22224226 TTTTAAATGC
* ** * * *
22224236 AACAAATTAGCACAAATTAACAATTCAAGTTCATATATTCACCAAAAACCAGACTAAATTTTCAA
1 AACAAATTAGCAAAAACCAACAATTCAAGTGCATATATGCACCAAAAACCAGACTAAATTTCCAA
* * ** * *
22224301 TTTTTATAAAATAAGAGGATGGAAGTCTAACAAATTAAAGTTTCCAATGAAACTCAGACTTACAC
66 TTTTTACAAAATAAGAGAATCAAAGTCTAACAAATTAAAGTTTCCAATGAAACTCAAAATTACAC
22224366 CATTAAGTAAATAAGAGTTTTAAACTATTGAAGATCAA
131 CATTAAGTAAATAAGAGTTTTAAACTATTGAAGATCAA
** *
22224404 AACAAATTAGCAAAAACCAACTGTTCAAGTGCATGTATGCACCAAAAA-CAGGA-TCAAATTTCC
1 AACAAATTAGCAAAAACCAACAATTCAAGTGCATATATGCACCAAAAACCA-GACT-AAATTTCC
* * * *
22224467 AATTTTTGCAAATTAAGAGAATCAAATTCTAACAAATTAAAGTTTCCAATGAAATTCAAAATTAC
64 AATTTTTACAAAATAAGAGAATCAAAGTCTAACAAATTAAAGTTTCCAATGAAACTCAAAATTAC
22224532 ACCATTAAGTAAATAAGAGTTTTAAA
129 ACCATTAAGTAAATAAGAGTTTTAAA
22224558 TTACCTGAGA
Statistics
Matches: 133, Mismatches: 19, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
167 3 0.02
168 130 0.98
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.28
Consensus pattern (168 bp):
AACAAATTAGCAAAAACCAACAATTCAAGTGCATATATGCACCAAAAACCAGACTAAATTTCCAA
TTTTTACAAAATAAGAGAATCAAAGTCTAACAAATTAAAGTTTCCAATGAAACTCAAAATTACAC
CATTAAGTAAATAAGAGTTTTAAACTATTGAAGATCAA
Found at i:22226780 original size:28 final size:28
Alignment explanation
Indices: 22226731--22226787 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
22226721 CTAATTAATT
* *
22226731 TAAACCCTAAACCCCTAACCCCTATCCC
1 TAAACCCTAAACCCATAACCCCTAACCC
*
22226759 TAAACCCTAAA-TCATAAGCCCCTAACCC
1 TAAACCCTAAACCCATAA-CCCCTAACCC
22226787 T
1 T
22226788 TAAGTACCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 4 0.16
28 21 0.84
ACGTcount: A:0.35, C:0.44, G:0.02, T:0.19
Consensus pattern (28 bp):
TAAACCCTAAACCCATAACCCCTAACCC
Found at i:22226855 original size:15 final size:15
Alignment explanation
Indices: 22226830--22226867 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
22226820 AACCCTTGAA
22226830 CCATAAA-CCATAAT
1 CCATAAACCCATAAT
*
22226844 CCCTAAACCCATAAT
1 CCATAAACCCATAAT
22226859 CCATAAACC
1 CCATAAACC
22226868 TTAAGATAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 6 0.29
15 15 0.71
ACGTcount: A:0.45, C:0.37, G:0.00, T:0.18
Consensus pattern (15 bp):
CCATAAACCCATAAT
Found at i:22227110 original size:15 final size:15
Alignment explanation
Indices: 22227075--22227122 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
22227065 CTTAAACCCC
* *
22227075 AACCCTTAAACCATA
1 AACCCATAATCCATA
*
22227090 AA-CCATAATCCCTA
1 AACCCATAATCCATA
*
22227104 AACCCATGATCCATA
1 AACCCATAATCCATA
22227119 AACC
1 AACC
22227123 TTAAGATAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
14 11 0.41
15 16 0.59
ACGTcount: A:0.44, C:0.35, G:0.02, T:0.19
Consensus pattern (15 bp):
AACCCATAATCCATA
Found at i:22227523 original size:41 final size:41
Alignment explanation
Indices: 22227477--22227744 Score: 329
Period size: 41 Copynumber: 6.5 Consensus size: 41
22227467 GAGCTTTTTT
* * *
22227477 AAAAACGCCGATAAAGCCCCGAGAATTAGCGGCGCTTCTTC
1 AAAAACGCCGCTAAAGCACCGAGCATTAGCGGCGCTTCTTC
* *
22227518 AAAAACGTCGCTAAAGCACCGAGCATTAGCGACGCTTCTTC
1 AAAAACGCCGCTAAAGCACCGAGCATTAGCGGCGCTTCTTC
* *
22227559 AAAAAAGCCGCTAAAGCACCGAGCATTCGCGGCGCTTCTTC
1 AAAAACGCCGCTAAAGCACCGAGCATTAGCGGCGCTTCTTC
* * * *
22227600 GAAAATGCTGCTAAAGCATCGAGCATTAGCGGCGCTTCTTC
1 AAAAACGCCGCTAAAGCACCGAGCATTAGCGGCGCTTCTTC
* * * *
22227641 AAAAACGTCGCTAAAGTATCGAGCATTAGCGGCGCTTTTTC
1 AAAAACGCCGCTAAAGCACCGAGCATTAGCGGCGCTTCTTC
* * * ** *
22227682 AAAAATGCCCCTAAAGTACCGAGCATTAGCGGTACTTTTTC
1 AAAAACGCCGCTAAAGCACCGAGCATTAGCGGCGCTTCTTC
* *
22227723 AAAAATGCCGCTAAAGCCCCGA
1 AAAAACGCCGCTAAAGCACCGA
22227745 AAGGTAAGAA
Statistics
Matches: 198, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 198 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (41 bp):
AAAAACGCCGCTAAAGCACCGAGCATTAGCGGCGCTTCTTC
Found at i:22227707 original size:123 final size:123
Alignment explanation
Indices: 22227477--22227739 Score: 364
Period size: 123 Copynumber: 2.1 Consensus size: 123
22227467 GAGCTTTTTT
* * **
22227477 AAAAACGCCGATAAAGCCCCGAGAATTAGCGGCGCTTCTTCAAAAACGTCGCTAAAGCACCGAGC
1 AAAAATGCCGCTAAAGCATCGAGAATTAGCGGCGCTTCTTCAAAAACGTCGCTAAAGCACCGAGC
* * *
22227542 ATTAGCGACGCTTCTTCAAAAAAGCCGCTAAAGCACCGAGCATTCGCGGCGCTTCTTC
66 ATTAGCGACGCTTCTTCAAAAAAGCCCCTAAAGCACCGAGCATTAGCGGCACTTCTTC
* * * * *
22227600 GAAAATGCTGCTAAAGCATCGAGCATTAGCGGCGCTTCTTCAAAAACGTCGCTAAAGTATCGAGC
1 AAAAATGCCGCTAAAGCATCGAGAATTAGCGGCGCTTCTTCAAAAACGTCGCTAAAGCACCGAGC
* * * * * *
22227665 ATTAGCGGCGCTTTTTCAAAAATGCCCCTAAAGTACCGAGCATTAGCGGTACTTTTTC
66 ATTAGCGACGCTTCTTCAAAAAAGCCCCTAAAGCACCGAGCATTAGCGGCACTTCTTC
22227723 AAAAATGCCGCTAAAGC
1 AAAAATGCCGCTAAAGC
22227740 CCCGAAAGGT
Statistics
Matches: 120, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
123 120 1.00
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (123 bp):
AAAAATGCCGCTAAAGCATCGAGAATTAGCGGCGCTTCTTCAAAAACGTCGCTAAAGCACCGAGC
ATTAGCGACGCTTCTTCAAAAAAGCCCCTAAAGCACCGAGCATTAGCGGCACTTCTTC
Found at i:22227867 original size:40 final size:39
Alignment explanation
Indices: 22227800--22227907 Score: 105
Period size: 40 Copynumber: 2.7 Consensus size: 39
22227790 TTTGAAAAAA
* *
22227800 TGCCGTTAATGCTC-ATTTTCAGTGGCGTGTTCCGA-AAAG
1 TGCCGATAATGCTCGATTTT-AGCGGCGTGTTCC-ATAAAG
*
22227839 TGCC-ATAAATGCTCGATCTTTAGCGGCGTTTTCCATAAAG
1 TGCCGAT-AATGCTCGAT-TTTAGCGGCGTGTTCCATAAAG
* *
22227879 TGCCGCTAATGCTTGATTTTTAGCGGCGT
1 TGCCGATAATGCTCGA-TTTTAGCGGCGT
22227908 TTTTTGTCCA
Statistics
Matches: 58, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
38 1 0.02
39 12 0.21
40 40 0.69
41 5 0.09
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.34
Consensus pattern (39 bp):
TGCCGATAATGCTCGATTTTAGCGGCGTGTTCCATAAAG
Found at i:22238795 original size:12 final size:10
Alignment explanation
Indices: 22238767--22238807 Score: 55
Period size: 10 Copynumber: 3.9 Consensus size: 10
22238757 TATGAACATG
22238767 ATTAATTTTA
1 ATTAATTTTA
22238777 ATTAATTTTA
1 ATTAATTTTA
*
22238787 TAGTTAATTTTG
1 -A-TTAATTTTA
22238799 ATTAATTTT
1 ATTAATTTT
22238808 GACTATTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
10 18 0.64
11 2 0.07
12 8 0.29
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (10 bp):
ATTAATTTTA
Found at i:22244921 original size:28 final size:28
Alignment explanation
Indices: 22244889--22244955 Score: 107
Period size: 28 Copynumber: 2.4 Consensus size: 28
22244879 AACAGTACAG
22244889 TGTGGGCCTTAGCCCAAAATAGTAACAA
1 TGTGGGCCTTAGCCCAAAATAGTAACAA
* * *
22244917 TGTGGGCCTTAGCCCAATATAGTAATAG
1 TGTGGGCCTTAGCCCAAAATAGTAACAA
22244945 TGTGGGCCTTA
1 TGTGGGCCTTA
22244956 CCCTAGTACA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.27
Consensus pattern (28 bp):
TGTGGGCCTTAGCCCAAAATAGTAACAA
Found at i:22245346 original size:27 final size:27
Alignment explanation
Indices: 22245316--22245375 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
22245306 TACCAATCAT
*
22245316 TTTACTCGATGAGGGTATTTCAGTCAA
1 TTTACCCGATGAGGGTATTTCAGTCAA
** *
22245343 TTTACCCTTTGAGGGTATTTCAGTCAT
1 TTTACCCGATGAGGGTATTTCAGTCAA
22245370 TTTACC
1 TTTACC
22245376 ATTCGGGGGT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.42
Consensus pattern (27 bp):
TTTACCCGATGAGGGTATTTCAGTCAA
Found at i:22245385 original size:27 final size:27
Alignment explanation
Indices: 22245328--22245560 Score: 204
Period size: 27 Copynumber: 8.6 Consensus size: 27
22245318 TACTCGATGA
* * *
22245328 GGGTATTTCAGTCAATTTACCCTTTGA
1 GGGTATTTCAGTCATTTTACCCTTCGG
*
22245355 GGGTATTTCAGTCATTTTACCATTCGG
1 GGGTATTTCAGTCATTTTACCCTTCGG
* * *
22245382 GGGTATTTCAATCATTTTACCC-ACTAG
1 GGGTATTTCAGTCATTTTACCCTTC-GG
** ***
22245409 GGGTATTTTGGTCATTTTACCCTTTAA
1 GGGTATTTCAGTCATTTTACCCTTCGG
* * *
22245436 GGGTATTTC-GATAATTTTACCCTCCAG
1 GGGTATTTCAG-TCATTTTACCCTTCGG
*
22245463 GGGTATTTCAGTCATTTTACCCTACGG
1 GGGTATTTCAGTCATTTTACCCTTCGG
*
22245490 AGGTATTTCAGTCATTTT-CCCTTGCGG
1 GGGTATTTCAGTCATTTTACCCTT-CGG
* * * * *
22245517 GGGCATTT-TGATCATTTTACTCTCCGA
1 GGGTATTTCAG-TCATTTTACCCTTCGG
22245544 GGGTATTTCAGTCATTT
1 GGGTATTTCAGTCATTT
22245561 GCCCACGAAT
Statistics
Matches: 166, Mismatches: 32, Indels: 16
0.78 0.15 0.07
Matches are distributed among these distances:
26 7 0.04
27 154 0.93
28 5 0.03
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (27 bp):
GGGTATTTCAGTCATTTTACCCTTCGG
Found at i:22245534 original size:81 final size:79
Alignment explanation
Indices: 22245328--22245560 Score: 229
Period size: 81 Copynumber: 2.9 Consensus size: 79
22245318 TACTCGATGA
* ** * * *
22245328 GGGTATTTCAGTCAATTTACCCTTTGAGGGTATTTC-AGTCATTTTACCATTCGGGGGTATTTCA
1 GGGTATTTCAGTCATTTTACCCTTCAAGGGCATTTCGA-TCATTTTACC-CTCCGGGGTATTTCA
*
22245392 ATCATTTTACCCACTAG
64 GTCATTTTACCCAC-AG
** * * *
22245409 GGGTATTTTGGTCATTTTACCCTTTAAGGGTATTTCGATAATTTTACCCTCCAGGGGTATTTCAG
1 GGGTATTTCAGTCATTTTACCCTTCAAGGGCATTTCGATCATTTTACCCTCC-GGGGTATTTCAG
22245474 TCATTTTACCCTAC-G
65 TCATTTTACCC-ACAG
** * *
22245489 GAGGTATTTCAGTCATTTT-CCCTTGCGGGGGCATTTTGATCATTTTACTCTCCGAGGGTATTTC
1 G-GGTATTTCAGTCATTTTACCCTT-CAAGGGCATTTCGATCATTTTACCCTCCG-GGGTATTTC
22245553 AGTCATTT
63 AGTCATTT
22245561 GCCCACGAAT
Statistics
Matches: 129, Mismatches: 17, Indels: 12
0.82 0.11 0.08
Matches are distributed among these distances:
80 10 0.08
81 116 0.90
82 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.20, T:0.41
Consensus pattern (79 bp):
GGGTATTTCAGTCATTTTACCCTTCAAGGGCATTTCGATCATTTTACCCTCCGGGGTATTTCAGT
CATTTTACCCACAG
Found at i:22247116 original size:24 final size:24
Alignment explanation
Indices: 22247057--22247117 Score: 68
Period size: 24 Copynumber: 2.5 Consensus size: 24
22247047 CATTCTATTA
* * *
22247057 GCCTTTATGGCATATTTTTATTTG
1 GCCTTTATGGCATATTCTGATTGG
* *
22247081 ACCTTTAGGGCATATTCTGATTGG
1 GCCTTTATGGCATATTCTGATTGG
*
22247105 GCCTTCATGGCAT
1 GCCTTTATGGCAT
22247118 TTTGTTAGCC
Statistics
Matches: 29, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.43
Consensus pattern (24 bp):
GCCTTTATGGCATATTCTGATTGG
Found at i:22247175 original size:19 final size:20
Alignment explanation
Indices: 22247112--22247175 Score: 62
Period size: 19 Copynumber: 3.3 Consensus size: 20
22247102 TGGGCCTTCA
*
22247112 TGGCATTTTGTTAGCCTTTG
1 TGGCATTATGTTAGCCTTTG
* * *
22247132 TGGAAATCT-TTAGCCGTTT-
1 TGGCATTATGTTAGCC-TTTG
22247151 TGGCATTATGTT-GCCTTTG
1 TGGCATTATGTTAGCCTTTG
22247170 TGGCAT
1 TGGCAT
22247176 ACTCTGTATA
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
18 3 0.09
19 21 0.60
20 11 0.31
ACGTcount: A:0.14, C:0.16, G:0.25, T:0.45
Consensus pattern (20 bp):
TGGCATTATGTTAGCCTTTG
Found at i:22254079 original size:20 final size:20
Alignment explanation
Indices: 22254054--22254094 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
22254044 ATTTAACCTT
*
22254054 AGTTTATAACTTTAAAAATC
1 AGTTTATAAATTTAAAAATC
22254074 AGTTTATAAATTTAAAAATC
1 AGTTTATAAATTTAAAAATC
22254094 A
1 A
22254095 CTTAAACTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.07, G:0.05, T:0.39
Consensus pattern (20 bp):
AGTTTATAAATTTAAAAATC
Found at i:22257567 original size:50 final size:48
Alignment explanation
Indices: 22257489--22257614 Score: 139
Period size: 50 Copynumber: 2.6 Consensus size: 48
22257479 TACATGTATT
* ** *
22257489 CTTATACGAGCT-ATGAATCGATATGCTCTCACGAGCTGGAAATCGGTAAG
1 CTTATACGAGCTGA-GAATCG-TAAGCTCTCAAAAGCT-AAAATCGGTAAG
22257539 CTTATACGAGCTGAGAATCAGTAAGCTCTCAAAAGCTAAAATCGGTAAG
1 CTTATACGAGCTGAGAATC-GTAAGCTCTCAAAAGCTAAAATCGGTAAG
* *
22257588 ATCATACGAGCTGA-AATCGGTAAGCTC
1 CTTATACGAGCTGAGAATC-GTAAGCTC
22257615 ATACAAGCTG
Statistics
Matches: 67, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
48 12 0.18
49 23 0.34
50 30 0.45
51 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (48 bp):
CTTATACGAGCTGAGAATCGTAAGCTCTCAAAAGCTAAAATCGGTAAG
Found at i:22257624 original size:24 final size:24
Alignment explanation
Indices: 22257522--22257624 Score: 109
Period size: 24 Copynumber: 4.2 Consensus size: 24
22257512 TGCTCTCACG
* *
22257522 AGCTGGAAATCGGTAAGCTTATACG
1 AGCT-GAAATCGGTAAGCTCATACA
* *
22257547 AGCTGAGAATCAGTAAGCTC-TCAAA
1 AGCTGA-AATCGGTAAGCTCAT-ACA
* * *
22257572 AGCTAAAATCGGTAAGATCATACG
1 AGCTGAAATCGGTAAGCTCATACA
22257596 AGCTGAAATCGGTAAGCTCATACA
1 AGCTGAAATCGGTAAGCTCATACA
22257620 AGCTG
1 AGCTG
22257625 TGGTGTGTCC
Statistics
Matches: 63, Mismatches: 12, Indels: 7
0.77 0.15 0.09
Matches are distributed among these distances:
24 41 0.65
25 22 0.35
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.21
Consensus pattern (24 bp):
AGCTGAAATCGGTAAGCTCATACA
Found at i:22266548 original size:6 final size:6
Alignment explanation
Indices: 22266520--22266715 Score: 85
Period size: 6 Copynumber: 30.5 Consensus size: 6
22266510 TCCTTCTTTG
* * *
22266520 TTATAT ATTATTT TTATATT TTATAT TTATAT ATTAT-T ATTATAT ATATTT
1 TTATAT -TTATAT TTATA-T TTATAT TTATAT -TTATAT -TTATAT TTATAT
*
22266571 TTATAT TTATATTT TTATAT TTATAT ATTAT-T ATTATA- -TATAT TTTTAT
1 TTATAT TTATA--T TTATAT TTATAT -TTATAT -TTATAT TTATAT TTATAT
* * * * * *
22266620 ATATAT TATATAT TTTTAT TTCTAT TTAGTTAT TATTTAT TTTTAT TTCTATT
1 TTATAT T-TATAT TTATAT TTATAT TTA--TAT T-TATAT TTATAT TTATA-T
* * * *
22266673 TTTTAT TTCTAT TTAGTTAT TATTTAG TTATTAT TTATAT TTA
1 TTATAT TTATAT TTA--TAT T-TATAT TTA-TAT TTATAT TTA
22266716 GTATATTTAG
Statistics
Matches: 149, Mismatches: 22, Indels: 37
0.72 0.11 0.18
Matches are distributed among these distances:
4 4 0.03
6 86 0.58
7 43 0.29
8 14 0.09
9 2 0.01
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (6 bp):
TTATAT
Found at i:22266565 original size:2 final size:2
Alignment explanation
Indices: 22266541--22266632 Score: 54
Period size: 2 Copynumber: 49.5 Consensus size: 2
22266531 TTTTATATTT
* * * *
22266541 TA TA TT TA TA TA T- TA T- TA T- TA TA TA TA TT TT TA TA TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
22266580 TA TT TT TA TA TT TA TA TA T- TA T- TA T- TA TA TA TA TT TT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22266619 TA TA TA T- TA TA TA T
1 TA TA TA TA TA TA TA T
22266633 TTTTATTTCT
Statistics
Matches: 71, Mismatches: 12, Indels: 14
0.73 0.12 0.14
Matches are distributed among these distances:
1 7 0.10
2 64 0.90
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (2 bp):
TA
Found at i:22266576 original size:31 final size:31
Alignment explanation
Indices: 22266521--22266665 Score: 121
Period size: 30 Copynumber: 4.8 Consensus size: 31
22266511 CCTTCTTTGT
*
22266521 TATA-TATTATT-TTTATA-TTTTATATTTA
1 TATATTATTATTATATATATTTTTATATTTA
22266549 TATATTATTATTATATATATTTTTATATTTA
1 TATATTATTATTATATATATTTTTATATTTA
* * *
22266580 TAT-TT-TTATATTTATATATTATTAT-TATA
1 TATATTATTAT-TATATATATTTTTATATTTA
* *
22266609 TATATTTTTATATATATTATATATTTT-TATTTC
1 TATATTATTAT-TATA-TATAT-TTTTATATTTA
22266642 TAT-TTAGTTATTAT-T-TATTTTTAT
1 TATATTA-TTATTATATATATTTTTAT
22266666 TTCTATTTTT
Statistics
Matches: 97, Mismatches: 9, Indels: 21
0.76 0.07 0.17
Matches are distributed among these distances:
28 8 0.08
29 21 0.22
30 23 0.24
31 22 0.23
32 11 0.11
33 12 0.12
ACGTcount: A:0.32, C:0.01, G:0.01, T:0.67
Consensus pattern (31 bp):
TATATTATTATTATATATATTTTTATATTTA
Found at i:22266592 original size:45 final size:44
Alignment explanation
Indices: 22266527--22266739 Score: 190
Period size: 45 Copynumber: 4.7 Consensus size: 44
22266517 TTGTTATATA
*
22266527 TTATTTTTATA-TTTTATATTTATATATTATTATTATATATATTT
1 TTATATTTATATTTTTATATTTATATATTATTATTATAT-TATTT
22266571 TTATATTTATATTTTTATATTTATATATTATTATTATATATATTTT
1 TTATATTTATATTTTTATATTTATATATTATTATTATAT-TA-TTT
*
22266617 TATATATATTATATATTTT-TATTTCTAT-TTAGTTATTAT-TTATTT
1 T-TATAT-TTATAT-TTTTATATTTATATATTA-TTATTATATTATTT
*
22266662 TTAT-TTCTAT-TTTTTAT-TTCTATTTAGTTATTATT-TAGTTATTAT
1 TTATATT-TATATTTTTATATT-TATATA-TTATTATTATA-TTATT-T
*
22266707 TTATATTTAGTATATTTAGATATTTAGTATATT
1 TTATATTTA-TAT-TTT-TATATTTA-TATATT
22266740 TAGAATTTAT
Statistics
Matches: 142, Mismatches: 6, Indels: 37
0.77 0.03 0.20
Matches are distributed among these distances:
41 6 0.04
42 7 0.05
43 9 0.06
44 21 0.15
45 41 0.29
46 9 0.06
47 10 0.07
48 24 0.17
49 10 0.07
50 5 0.04
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (44 bp):
TTATATTTATATTTTTATATTTATATATTATTATTATATTATTT
Found at i:22266645 original size:19 final size:18
Alignment explanation
Indices: 22266570--22266714 Score: 80
Period size: 19 Copynumber: 7.5 Consensus size: 18
22266560 TATATATATT
* *
22266570 TTTATATTTATATTTTTA
1 TTTATATTTTTATTTCTA
*
22266588 TATT-TATATATTATTAT-TA
1 T-TTATAT-TTTTATT-TCTA
* * *
22266607 TATATATTTTTATATATA
1 TTTATATTTTTATTTCTA
22266625 TTATATATTTTTATTTCTA
1 TT-TATATTTTTATTTCTA
*
22266644 TTTAGTTATTATTTATTTTTA
1 TTTA--TATT-TTTATTTCTA
*
22266665 TTTCTATTTTTTATTTCTA
1 TTTATA-TTTTTATTTCTA
22266684 TTTAGTTATTATTTAGTTAT-TA
1 TTTA--TATT-TTTA-TT-TCTA
22266706 TTTATATTT
1 TTTATATTT
22266715 AGTATATTTA
Statistics
Matches: 100, Mismatches: 12, Indels: 29
0.71 0.09 0.21
Matches are distributed among these distances:
17 1 0.01
18 15 0.15
19 44 0.44
20 13 0.13
21 18 0.18
22 8 0.08
23 1 0.01
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (18 bp):
TTTATATTTTTATTTCTA
Found at i:22266653 original size:27 final size:26
Alignment explanation
Indices: 22266524--22266671 Score: 97
Period size: 27 Copynumber: 6.0 Consensus size: 26
22266514 TCTTTGTTAT
*
22266524 ATATTATT-TTTATATTTTATATT-TAT
1 ATATTATTATATAT-TTTTAT-TTCTAT
* *
22266550 ATATTATTAT-TATATATATTT-T-T
1 ATATTATTATATATTTTTATTTCTAT
*
22266573 ATA-T-TTATAT-TTTTATATTTATAT
1 ATATTATTATATATTTT-TATTTCTAT
*
22266597 ATTATTATTATATA----TATTTTTAT
1 A-TATTATTATATATTTTTATTTCTAT
22266620 ATA-TATTATATATTTTTATTTCTAT
1 ATATTATTATATATTTTTATTTCTAT
* *
22266645 TTAGTTATTATTTATTTTTATTTCTAT
1 ATA-TTATTATATATTTTTATTTCTAT
22266672 TTTTTATTTC
Statistics
Matches: 99, Mismatches: 8, Indels: 29
0.73 0.06 0.21
Matches are distributed among these distances:
21 15 0.15
22 9 0.09
23 14 0.14
24 5 0.05
25 16 0.16
26 12 0.12
27 28 0.28
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.67
Consensus pattern (26 bp):
ATATTATTATATATTTTTATTTCTAT
Found at i:22266659 original size:40 final size:38
Alignment explanation
Indices: 22266580--22266714 Score: 129
Period size: 40 Copynumber: 3.5 Consensus size: 38
22266570 TTTATATTTA
* *
22266580 TATTT-TTATATTTATA-TATTATTAT-TATATA--TAT
1 TATTTATTATATTTATATTTTTATT-TCTATTTAGTTAT
22266614 T-TTTATATATATTATATATTTTTATTTCTATTTAGTTAT
1 TATTTAT-TATATT-TATATTTTTATTTCTATTTAGTTAT
* *
22266653 TATTTATTTTTATTTCTATTTTTTATTTCTATTTAGTTAT
1 TATTTA-TTATATTTATA-TTTTTATTTCTATTTAGTTAT
22266693 TATTTAGTTATTATTTATATTT
1 TATTTA-TTA-TATTTATATTT
22266715 AGTATATTTA
Statistics
Matches: 83, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
33 3 0.04
34 2 0.02
35 6 0.07
36 5 0.06
37 11 0.13
39 7 0.08
40 41 0.49
41 8 0.10
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.68
Consensus pattern (38 bp):
TATTTATTATATTTATATTTTTATTTCTATTTAGTTAT
Found at i:22266672 original size:27 final size:27
Alignment explanation
Indices: 22266598--22266715 Score: 99
Period size: 27 Copynumber: 4.6 Consensus size: 27
22266588 TATTTATATA
* * *
22266598 TTATTA-TTATATATATTTTTATATA-
1 TTATTATTTATATTTATTTCTATTTAG
* *
22266623 -TATTATATATTTTTATTTCTATTTAG
1 TTATTATTTATATTTATTTCTATTTAG
*
22266649 TTATTATTTATTTTTATTTCTA-TT--
1 TTATTATTTATATTTATTTCTATTTAG
*
22266673 TT-TTATTTCTATTTAGTTAT-TATTTAG
1 TTATTATTTATATTTA-TT-TCTATTTAG
22266700 TTATTATTTATATTTA
1 TTATTATTTATATTTA
22266716 GTATATTTAG
Statistics
Matches: 75, Mismatches: 9, Indels: 15
0.76 0.09 0.15
Matches are distributed among these distances:
23 11 0.15
24 11 0.15
25 17 0.23
26 2 0.03
27 22 0.29
28 12 0.16
ACGTcount: A:0.27, C:0.03, G:0.03, T:0.68
Consensus pattern (27 bp):
TTATTATTTATATTTATTTCTATTTAG
Found at i:22266697 original size:17 final size:13
Alignment explanation
Indices: 22266632--22266686 Score: 67
Period size: 13 Copynumber: 4.2 Consensus size: 13
22266622 ATATTATATA
22266632 TTTTTATTTCTAT
1 TTTTTATTTCTAT
* *
22266645 TTAGTTATTATTTA-
1 TT-TTTATT-TCTAT
22266659 TTTTTATTTCTAT
1 TTTTTATTTCTAT
22266672 TTTTTATTTCTAT
1 TTTTTATTTCTAT
22266685 TT
1 TT
22266687 AGTTATTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
12 3 0.09
13 22 0.63
14 7 0.20
15 3 0.09
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (13 bp):
TTTTTATTTCTAT
Found at i:22266698 original size:11 final size:10
Alignment explanation
Indices: 22266520--22266710 Score: 92
Period size: 10 Copynumber: 19.4 Consensus size: 10
22266510 TCCTTCTTTG
22266520 TTATATATTAT
1 TTAT-TATTAT
22266531 TT-TTA-TA-
1 TTATTATTAT
22266538 TT-TTA-TAT
1 TTATTATTAT
22266546 TTATATATTA-
1 TTAT-TATTAT
22266556 TTATTATATAT
1 TTATTAT-TAT
*
22266567 ATTTTTA-TAT
1 -TTATTATTAT
22266577 TTA-TATT-T
1 TTATTATTAT
22266585 TTA-TATTTAT
1 TTATTA-TTAT
*
22266595 ATATTATTA-
1 TTATTATTAT
22266604 TTA-TATATAT
1 TTATTAT-TAT
22266614 TT-TTATATAT
1 TTATTAT-TAT
22266624 ATTATATATT-T
1 -TTAT-TATTAT
22266635 TTATT-TCTAT
1 TTATTAT-TAT
22266645 TTAGTTATTAT
1 TTA-TTATTAT
*
22266656 TTATTTTTAT
1 TTATTATTAT
* *
22266666 TT-CTATTTT
1 TTATTATTAT
22266675 TTATT-TCTAT
1 TTATTAT-TAT
22266685 TTAGTTATTAT
1 TTA-TTATTAT
22266696 TTAGTTATTAT
1 TTA-TTATTAT
22266707 TTAT
1 TTAT
22266711 ATTTAGTATA
Statistics
Matches: 145, Mismatches: 10, Indels: 51
0.70 0.05 0.25
Matches are distributed among these distances:
7 7 0.05
8 16 0.11
9 24 0.17
10 50 0.34
11 36 0.25
12 9 0.06
13 3 0.02
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.68
Consensus pattern (10 bp):
TTATTATTAT
Found at i:22266713 original size:17 final size:16
Alignment explanation
Indices: 22266525--22266753 Score: 137
Period size: 17 Copynumber: 14.4 Consensus size: 16
22266515 CTTTGTTATA
22266525 TATTATT-TTTATA-T
1 TATTATTATTTATATT
22266539 T-TTA-TATTTATATAT
1 TATTATTATTTATAT-T
*
22266554 TATTATTATATATATT
1 TATTATTATTTATATT
22266570 T-TTA-TATTTATATT
1 TATTATTATTTATATT
22266584 T-TTA-TATTTATATAT
1 TATTATTATTTATAT-T
*
22266599 TATTATTATATATATT
1 TATTATTATTTATATT
22266615 T-TTATATATATTATA--
1 TATTAT-TAT-TTATATT
* *
22266630 TATTTTTATTTCTATT
1 TATTATTATTTATATT
*
22266646 TAGTTATTATTTATTTT
1 TA-TTATTATTTATATT
*
22266663 TATT-TCTATTTTTTATT
1 TATTAT-TA-TTTATATT
* *
22266680 T-CTATTTAGTTATTATT
1 TATTA-TTATTTA-TATT
22266697 TAGTTATTATTTATATT
1 TA-TTATTATTTATATT
*
22266714 TAGTA-TATTTAGATATT
1 TATTATTATTT--ATATT
* *
22266731 TAGTA-TATTTAGAATT
1 TATTATTATTTA-TATT
22266747 TATTATT
1 TATTATT
22266754 TAGCTTCTGA
Statistics
Matches: 171, Mismatches: 19, Indels: 47
0.72 0.08 0.20
Matches are distributed among these distances:
12 1 0.01
13 9 0.05
14 27 0.16
15 22 0.13
16 34 0.20
17 69 0.40
18 7 0.04
19 2 0.01
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (16 bp):
TATTATTATTTATATT
Found at i:22266737 original size:26 final size:28
Alignment explanation
Indices: 22266682--22266756 Score: 75
Period size: 26 Copynumber: 2.6 Consensus size: 28
22266672 TTTTTATTTC
* *
22266682 TATTTAGTTATTATTTAGTTATTATTTA
1 TATTTAGTTATTATTTAGATATTATGTA
22266710 TATTTAG-TA-TATTTAGATATT-TAGTA
1 TATTTAGTTATTATTTAGATATTAT-GTA
22266736 TATTTAGAATTTATTATTTAG
1 TATTTAG---TTATTATTTAG
22266757 CTTCTGATCC
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
25 1 0.03
26 20 0.51
27 2 0.05
28 7 0.18
30 2 0.05
31 7 0.18
ACGTcount: A:0.32, C:0.00, G:0.09, T:0.59
Consensus pattern (28 bp):
TATTTAGTTATTATTTAGATATTATGTA
Found at i:22274223 original size:19 final size:22
Alignment explanation
Indices: 22274197--22274246 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
22274187 GAACTAGATT
22274197 AGGTTAAAA-GGG-TG-TTTTA
1 AGGTTAAAAGGGGATGTTTTTA
*
22274216 ATGTTAAAAGGGGATGTTTTTA
1 AGGTTAAAAGGGGATGTTTTTA
22274238 AGGTTAAAA
1 AGGTTAAAA
22274247 ATCGAGCATA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 8 0.31
20 3 0.12
21 2 0.08
22 13 0.50
ACGTcount: A:0.36, C:0.00, G:0.28, T:0.36
Consensus pattern (22 bp):
AGGTTAAAAGGGGATGTTTTTA
Found at i:22298237 original size:51 final size:52
Alignment explanation
Indices: 22298069--22298249 Score: 285
Period size: 52 Copynumber: 3.5 Consensus size: 52
22298059 ACTAATGACT
*
22298069 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGTTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
* *
22298121 CCAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAATATAGCTTTGGTCA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
*
22298173 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAG-AAGGTAGCTTTGG-CTA
1 CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTC-A
* *
22298224 CAAGGGTGGTACTATGTGCAGGCCAC
1 CAAGTGTGGTACTATGTGAAGGCCAC
22298250 CGGGTATCTG
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
50 1 0.01
51 36 0.30
52 83 0.69
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.29
Consensus pattern (52 bp):
CAAGTGTGGTACTATGTGAAGGCCACTTTGTGAAGAAAGATAGCTTTGGTCA
Found at i:22309309 original size:29 final size:28
Alignment explanation
Indices: 22309226--22309309 Score: 73
Period size: 28 Copynumber: 2.9 Consensus size: 28
22309216 CTTGAAACGA
* *
22309226 TAACCACTGGCATAAAGTGCCTGGAACTG
1 TAACCACCGACAT-AAGTGCCTGGAACTG
* * *
22309255 -AAACACCGATACATAA-TACCTAGAACTG
1 TAACCACCG--ACATAAGTGCCTGGAACTG
22309283 TAACCACCGACATAGAGTGCCTGGAAC
1 TAACCACCGACATA-AGTGCCTGGAAC
22309310 ACCTTAATGA
Statistics
Matches: 42, Mismatches: 8, Indels: 10
0.70 0.13 0.17
Matches are distributed among these distances:
27 5 0.12
28 17 0.40
29 17 0.40
30 3 0.07
ACGTcount: A:0.37, C:0.26, G:0.19, T:0.18
Consensus pattern (28 bp):
TAACCACCGACATAAGTGCCTGGAACTG
Found at i:22318750 original size:20 final size:20
Alignment explanation
Indices: 22318727--22318793 Score: 62
Period size: 20 Copynumber: 3.4 Consensus size: 20
22318717 TACTTTCATA
22318727 CTCCTGATAACACTACGGTG
1 CTCCTGATAACACTACGGTG
* * *** *
22318747 CTCCTGACAATACTTTTGTA
1 CTCCTGATAACACTACGGTG
* *
22318767 CTCTTGATAGCACTACGGTG
1 CTCCTGATAACACTACGGTG
22318787 CTCCTGA
1 CTCCTGA
22318794 CAGTAGTTTC
Statistics
Matches: 32, Mismatches: 15, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.22, C:0.28, G:0.18, T:0.31
Consensus pattern (20 bp):
CTCCTGATAACACTACGGTG
Found at i:22318910 original size:40 final size:40
Alignment explanation
Indices: 22318687--22318945 Score: 250
Period size: 40 Copynumber: 6.5 Consensus size: 40
22318677 TGAATAAGTG
* * *
22318687 CTCCTGGTAGTACTACGGTGCTCCTGGA-AATACTTTCATA
1 CTCCTGATAGCACTACGGTGCTCCT-GATAGTACTTTCATA
* * * **
22318727 CTCCTGATAACACTACGGTGCTCCTGACAATACTTTTGTA
1 CTCCTGATAGCACTACGGTGCTCCTGATAGTACTTTCATA
* * * *
22318767 CTCTTGATAGCACTACGGTGCTCCTGACAGTAGTTTCATC
1 CTCCTGATAGCACTACGGTGCTCCTGATAGTACTTTCATA
* * * * *
22318807 CTCCTGATGGCACTATGGTGCTCCTAATAGTTCTTTCGTA
1 CTCCTGATAGCACTACGGTGCTCCTGATAGTACTTTCATA
* * *
22318847 CTCCTAATAGCACTACGGTGCTCTTGATAGTACTTTCGTA
1 CTCCTGATAGCACTACGGTGCTCCTGATAGTACTTTCATA
* * * ** *
22318887 CTCCTGTTAGCACTACGGTGCTCTTGATAGCAGATTCATG
1 CTCCTGATAGCACTACGGTGCTCCTGATAGTACTTTCATA
* *
22318927 CTCCTGTTTGCACTACGGT
1 CTCCTGATAGCACTACGGT
22318946 ACCCCTAATT
Statistics
Matches: 183, Mismatches: 35, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
39 2 0.01
40 181 0.99
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.34
Consensus pattern (40 bp):
CTCCTGATAGCACTACGGTGCTCCTGATAGTACTTTCATA
Found at i:22318953 original size:120 final size:120
Alignment explanation
Indices: 22318719--22318954 Score: 301
Period size: 120 Copynumber: 2.0 Consensus size: 120
22318709 CCTGGAAATA
* * *
22318719 CTTTCATACTCCTGATAACACTACGGTGCTCCTGACAATACTTTTGTACTCTTGATAGCACTACG
1 CTTTCATACTCCTAATAACACTACGGTGCTCCTGACAATACTTTCGTACTCCTGATAGCACTACG
* * * * *
22318784 GTGCTCCTGACAGTAGTTTCATCCTCCTGATGGCACTATGGTGCTCCTAATAGTT
66 GTGCTCCTGACAGCAGATTCATCCTCCTGATGGCACTACGGTACCCCTAATAGTT
* * * * * *
22318839 CTTTCGTACTCCTAATAGCACTACGGTGCTCTTGATAGTACTTTCGTACTCCTGTTAGCACTACG
1 CTTTCATACTCCTAATAACACTACGGTGCTCCTGACAATACTTTCGTACTCCTGATAGCACTACG
* * * * *
22318904 GTGCTCTTGATAGCAGATTCATGCTCCTGTTTGCACTACGGTACCCCTAAT
66 GTGCTCCTGACAGCAGATTCATCCTCCTGATGGCACTACGGTACCCCTAAT
22318955 TGCACTATGG
Statistics
Matches: 97, Mismatches: 19, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
120 97 1.00
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (120 bp):
CTTTCATACTCCTAATAACACTACGGTGCTCCTGACAATACTTTCGTACTCCTGATAGCACTACG
GTGCTCCTGACAGCAGATTCATCCTCCTGATGGCACTACGGTACCCCTAATAGTT
Found at i:22319814 original size:3 final size:3
Alignment explanation
Indices: 22319806--22319832 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
22319796 TTTGGTCTAT
22319806 TGA TGA TGA TGA TGA TGA TGA TGA TGA
1 TGA TGA TGA TGA TGA TGA TGA TGA TGA
22319833 ATTTTGATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
TGA
Found at i:22320779 original size:26 final size:24
Alignment explanation
Indices: 22320714--22320779 Score: 60
Period size: 26 Copynumber: 2.5 Consensus size: 24
22320704 CAGTTTCACT
*
22320714 GTGAGGCAGGTTCGCTAATGTGTTG
1 GTGA-GCAGGTTCGCCAATGTGTTG
* *
22320739 GTGAGCTGGGGTTCGCCAATTTGTCTG
1 GTGAGC--AGGTTCGCCAATGTGT-TG
22320766 GTGAGCAGGATTCG
1 GTGAGCAGG-TTCG
22320780 TCATGTAAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
24 2 0.06
25 6 0.18
26 17 0.52
27 8 0.24
ACGTcount: A:0.15, C:0.15, G:0.39, T:0.30
Consensus pattern (24 bp):
GTGAGCAGGTTCGCCAATGTGTTG
Found at i:22329042 original size:55 final size:56
Alignment explanation
Indices: 22328914--22329049 Score: 143
Period size: 57 Copynumber: 2.4 Consensus size: 56
22328904 CTCCTTTCCC
* * * *
22328914 AAGATAGCCACAGAGGCTTTCTTTTCAGAGTTTCACCACAAAGGCTTCCTTTTAAA
1 AAGATAGCCACAAAGGCTTCCTTTTCAGAGTATCACCACAAAGACTTCCTTTTAAA
* * * *
22328970 ATAGATCGCCACAAAGGCTTCCTTTTAACAGAG-ATCGCCACAAAGACTTTC-TTT-CA
1 A-AGATAGCCACAAAGGCTTCCTTTT--CAGAGTATCACCACAAAGACTTCCTTTTAAA
*
22329026 AAGATAGCCACAAAGGCGTCCTTT
1 AAGATAGCCACAAAGGCTTCCTTT
22329050 CACAAAAATT
Statistics
Matches: 67, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
55 21 0.31
56 3 0.04
57 24 0.36
58 14 0.21
59 5 0.07
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (56 bp):
AAGATAGCCACAAAGGCTTCCTTTTCAGAGTATCACCACAAAGACTTCCTTTTAAA
Found at i:22329049 original size:26 final size:28
Alignment explanation
Indices: 22328891--22329055 Score: 122
Period size: 29 Copynumber: 5.9 Consensus size: 28
22328881 CTTCAGATTA
* * *
22328891 CGCCACAAAGGCACTCC-TTTCCCAAGAT
1 CGCCACAAAGGC-TTCCTTTTACAAAGAT
* * * * *
22328919 AGCCACAGAGGCTTTCTTTT-CAGAGTTT
1 CGCCACAAAGGCTTCCTTTTACAAAG-AT
* *
22328947 CACCACAAAGGCTTCCTTTTAAAATAGAT
1 CGCCACAAAGGCTTCCTTTTACAA-AGAT
*
22328976 CGCCACAAAGGCTTCCTTTTAACAGAGAT
1 CGCCACAAAGGCTTCCTTTT-ACAAAGAT
* *
22329005 CGCCACAAAGACTTTC-TTT-CAAAGAT
1 CGCCACAAAGGCTTCCTTTTACAAAGAT
* * *
22329031 AGCCACAAAGGCGTCCTTTCACAAA
1 CGCCACAAAGGCTTCCTTTTACAAA
22329056 AATTGGTGTT
Statistics
Matches: 105, Mismatches: 25, Indels: 14
0.73 0.17 0.10
Matches are distributed among these distances:
26 18 0.17
27 7 0.07
28 37 0.35
29 39 0.37
30 4 0.04
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (28 bp):
CGCCACAAAGGCTTCCTTTTACAAAGAT
Found at i:22335666 original size:14 final size:14
Alignment explanation
Indices: 22335649--22335675 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22335639 GCCAAAAAAT
22335649 CGTGGCGAAATCAC
1 CGTGGCGAAATCAC
22335663 CGTGGCGAAATCA
1 CGTGGCGAAATCA
22335676 ATGGCCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.26, G:0.30, T:0.15
Consensus pattern (14 bp):
CGTGGCGAAATCAC
Found at i:22340652 original size:40 final size:40
Alignment explanation
Indices: 22340547--22340692 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
22340537 GCTACTCGTT
*
22340547 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
22340587 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
22340627 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
22340668 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22340693 CATCATTCAA
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 3 0.03
40 75 0.82
41 13 0.14
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:22351786 original size:9 final size:9
Alignment explanation
Indices: 22351772--22351797 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
22351762 ATTCATTAAT
22351772 TTTTAGTTA
1 TTTTAGTTA
22351781 TTTTAGTTA
1 TTTTAGTTA
22351790 TTTTAGTT
1 TTTTAGTT
22351798 TGTGTTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.12, T:0.69
Consensus pattern (9 bp):
TTTTAGTTA
Found at i:22351912 original size:33 final size:33
Alignment explanation
Indices: 22351875--22351970 Score: 93
Period size: 33 Copynumber: 3.2 Consensus size: 33
22351865 TATGTAACTT
*
22351875 TCATGTTAGTTGAGTTTGCATCATTAAATTAAG
1 TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
* *
22351908 TCATGTTAGTTTAA--TT--AT--GTAACTT---
1 TCATGTTAG-TTAAGTTTGCATCATTAAATTAAG
22351933 TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
1 TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
22351966 TCATG
1 TCATG
22351971 CATTAACTCA
Statistics
Matches: 48, Mismatches: 5, Indels: 20
0.66 0.07 0.27
Matches are distributed among these distances:
24 4 0.08
25 9 0.19
26 2 0.04
28 7 0.15
30 7 0.15
32 2 0.04
33 14 0.29
34 3 0.06
ACGTcount: A:0.30, C:0.09, G:0.16, T:0.45
Consensus pattern (33 bp):
TCATGTTAGTTAAGTTTGCATCATTAAATTAAG
Found at i:22359367 original size:7 final size:7
Alignment explanation
Indices: 22359355--22359379 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22359345 TAAAAGAAAT
22359355 ATATTAA
1 ATATTAA
22359362 ATATTAA
1 ATATTAA
22359369 ATATTAA
1 ATATTAA
22359376 ATAT
1 ATAT
22359380 CTTAATTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
ATATTAA
Found at i:22367673 original size:9 final size:9
Alignment explanation
Indices: 22367659--22367721 Score: 65
Period size: 9 Copynumber: 6.8 Consensus size: 9
22367649 TTATTAGAAA
22367659 TGAGAGACT
1 TGAGAGACT
22367668 TGAGAGACT
1 TGAGAGACT
22367677 TGAGAGGGA-T
1 TGAGA--GACT
*
22367687 TGAGAGAATT
1 TGAGAG-ACT
*
22367697 TGAGAGAAT
1 TGAGAGACT
*
22367706 TGAGAGAGT
1 TGAGAGACT
22367715 TGAGAGA
1 TGAGAGA
22367722 AGGATGTGAA
Statistics
Matches: 48, Mismatches: 2, Indels: 8
0.83 0.03 0.14
Matches are distributed among these distances:
8 1 0.02
9 32 0.67
10 13 0.27
11 2 0.04
ACGTcount: A:0.37, C:0.03, G:0.38, T:0.22
Consensus pattern (9 bp):
TGAGAGACT
Found at i:22367691 original size:19 final size:19
Alignment explanation
Indices: 22367667--22367720 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
22367657 AATGAGAGAC
*
22367667 TTGAGAGACTTGAGAGGGA
1 TTGAGAGACTTGAGAGGAA
*
22367686 TTGAGAGAATTTGAGA-GAA
1 TTGAGAG-ACTTGAGAGGAA
*
22367705 TTGAGAGAGTTGAGAG
1 TTGAGAGACTTGAGAG
22367721 AAGGATGTGA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 7 0.23
19 16 0.53
20 7 0.23
ACGTcount: A:0.35, C:0.02, G:0.39, T:0.24
Consensus pattern (19 bp):
TTGAGAGACTTGAGAGGAA
Found at i:22368204 original size:33 final size:33
Alignment explanation
Indices: 22368167--22368233 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
22368157 AAAATATTTC
22368167 CTAGAAAGATTTCGTTGAAGAAATTTATTTTAT
1 CTAGAAAGATTTCGTTGAAGAAATTTATTTTAT
22368200 CTAGAAAGATTTCGTTGAAGAAATTTATTTTAT
1 CTAGAAAGATTTCGTTGAAGAAATTTATTTTAT
22368233 C
1 C
22368234 GGAAATAATA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.07, G:0.15, T:0.42
Consensus pattern (33 bp):
CTAGAAAGATTTCGTTGAAGAAATTTATTTTAT
Found at i:22369702 original size:31 final size:31
Alignment explanation
Indices: 22369652--22369720 Score: 84
Period size: 31 Copynumber: 2.2 Consensus size: 31
22369642 TTTTACTCAT
* * *
22369652 TTCAGTCTCTAATATTATTAGACCTTTCTAA
1 TTCAATCTCTAACACTATTAGACCTTTCTAA
* * *
22369683 TTTAATCTCTAACACTATTAGACGTTTTTAA
1 TTCAATCTCTAACACTATTAGACCTTTCTAA
22369714 TTCAATC
1 TTCAATC
22369721 CTTTAAATGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.30, C:0.19, G:0.06, T:0.45
Consensus pattern (31 bp):
TTCAATCTCTAACACTATTAGACCTTTCTAA
Found at i:22369879 original size:20 final size:20
Alignment explanation
Indices: 22369856--22369894 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
22369846 TATATATAAT
*
22369856 TGTTTGAAAATTTAAAAATA
1 TGTTAGAAAATTTAAAAATA
**
22369876 TGTTAGAATTTTTAAAAAT
1 TGTTAGAAAATTTAAAAAT
22369895 TGTCAAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (20 bp):
TGTTAGAAAATTTAAAAATA
Found at i:22369931 original size:18 final size:19
Alignment explanation
Indices: 22369888--22369999 Score: 88
Period size: 20 Copynumber: 5.9 Consensus size: 19
22369878 TTAGAATTTT
* * *
22369888 TAAAAATTGTCAAAAATAA
1 TAAAAATTATAAAAAATTA
22369907 TTAAAAATTATAAAAAATTA
1 -TAAAAATTATAAAAAATTA
* *
22369927 TAAAAA--ACT-AGAAATTG
1 TAAAAATTA-TAAAAAATTA
*
22369944 TAAAAATCAT-AAAAATTA
1 TAAAAATTATAAAAAATTA
*
22369962 TAAAAATTATAAAAAAATTG
1 TAAAAATTAT-AAAAAATTA
*
22369982 TAAAAGATTGTAAAAAAT
1 TAAAA-ATTATAAAAAAT
22370000 AATTAAAAAA
Statistics
Matches: 76, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
17 13 0.17
18 17 0.22
19 7 0.09
20 35 0.46
21 4 0.05
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (19 bp):
TAAAAATTATAAAAAATTA
Found at i:22369967 original size:10 final size:10
Alignment explanation
Indices: 22369945--22370009 Score: 53
Period size: 9 Copynumber: 6.5 Consensus size: 10
22369935 TAGAAATTGT
*
22369945 AAAAATCAT-
1 AAAAATTATA
22369954 AAAAATTAT-
1 AAAAATTATA
22369963 AAAAATTATAA
1 AAAAATTAT-A
*
22369974 AAAAATTGTA
1 AAAAATTATA
* *
22369984 AAAGATTGTA
1 AAAAATTATA
*
22369994 AAAAATAATTA
1 AAAAATTA-TA
22370005 AAAAA
1 AAAAA
22370010 CAAAAAAAAA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
9 17 0.36
10 15 0.32
11 15 0.32
ACGTcount: A:0.68, C:0.02, G:0.05, T:0.26
Consensus pattern (10 bp):
AAAAATTATA
Found at i:22369986 original size:9 final size:9
Alignment explanation
Indices: 22369888--22369976 Score: 83
Period size: 9 Copynumber: 9.7 Consensus size: 9
22369878 TTAGAATTTT
*
22369888 TAAAAATTG
1 TAAAAATTA
*
22369897 TCAAAAATAA
1 T-AAAAATTA
22369907 TTAAAAATTA
1 -TAAAAATTA
22369917 TAAAAAATTA
1 T-AAAAATTA
22369927 TAAAAA--A
1 TAAAAATTA
* *
22369934 CTAGAAATTG
1 -TAAAAATTA
*
22369944 TAAAAATCA
1 TAAAAATTA
22369953 TAAAAATTA
1 TAAAAATTA
22369962 TAAAAATTA
1 TAAAAATTA
22369971 TAAAAA
1 TAAAAA
22369977 AATTGTAAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
7 1 0.02
8 5 0.08
9 36 0.55
10 22 0.34
11 1 0.02
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (9 bp):
TAAAAATTA
Found at i:22370629 original size:17 final size:17
Alignment explanation
Indices: 22370615--22370649 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
22370605 TTTATAATCT
22370615 TCCTATTTTTTTAATAA
1 TCCTATTTTTTTAATAA
*
22370632 TCCTATTTTTTAAATAA
1 TCCTATTTTTTTAATAA
22370649 T
1 T
22370650 TTTGTAAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.00, T:0.57
Consensus pattern (17 bp):
TCCTATTTTTTTAATAA
Found at i:22371274 original size:20 final size:20
Alignment explanation
Indices: 22371249--22371288 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
22371239 CGCAAAATGA
*
22371249 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
22371269 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
22371289 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:22371304 original size:14 final size:15
Alignment explanation
Indices: 22371228--22371304 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
22371218 GATTGGCAGT
* *
22371228 AAAATG-TTTTCCGC
1 AAAATGATTTTCTGG
22371242 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
22371256 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
22371276 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
22371291 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
22371305 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 25 0.50
15 11 0.22
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:22372622 original size:3 final size:3
Alignment explanation
Indices: 22372614--22372683 Score: 63
Period size: 3 Copynumber: 23.0 Consensus size: 3
22372604 TATTTAATTA
*
22372614 ATT ATT ATT ATT A-T ATT A-T ACTT GTTT ATT ATT ATT ATT ATTT ATT
1 ATT ATT ATT ATT ATT ATT ATT A-TT -ATT ATT ATT ATT ATT A-TT ATT
* * *
22372660 ATT ATT AAT ATT GTA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT
22372684 TTCGTGTACA
Statistics
Matches: 54, Mismatches: 8, Indels: 10
0.75 0.11 0.14
Matches are distributed among these distances:
2 4 0.07
3 44 0.81
4 6 0.11
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:22372648 original size:16 final size:15
Alignment explanation
Indices: 22372604--22372664 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 15
22372594 ACTATTTTAC
22372604 TATTTAATTAATTATTAT
1 TATTT-ATT-ATTA-TAT
22372622 TA-TTA-TATTATACT
1 TATTTATTATTATA-T
*
22372636 TGTTTATTATTATTAT
1 TATTTATTATTA-TAT
22372652 TATTTATTATTAT
1 TATTTATTATTAT
22372665 TAATATTGTA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
13 2 0.05
14 6 0.16
15 5 0.14
16 18 0.49
17 4 0.11
18 2 0.05
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.64
Consensus pattern (15 bp):
TATTTATTATTATAT
Found at i:22372658 original size:13 final size:14
Alignment explanation
Indices: 22372610--22372682 Score: 73
Period size: 13 Copynumber: 5.4 Consensus size: 14
22372600 TTACTATTTA
22372610 ATTA-ATTATTATT
1 ATTATATTATTATT
22372623 ATTATATTA-TACTT
1 ATTATATTATTA-TT
*
22372637 GTT-TATTATTATT
1 ATTATATTATTATT
22372650 ATTAT-TTATTATT
1 ATTATATTATTATT
* *
22372663 ATTAATATTGTAATT
1 ATT-ATATTATTATT
22372678 ATTAT
1 ATTAT
22372683 TTTCGTGTAC
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
13 26 0.52
14 15 0.30
15 9 0.18
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (14 bp):
ATTATATTATTATT
Found at i:22374668 original size:13 final size:13
Alignment explanation
Indices: 22374650--22374675 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22374640 AAAGAGAATT
22374650 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
22374663 GTTTTCTAGTAAA
1 GTTTTCTAGTAAA
22374676 AAATTGAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTAGTAAA
Found at i:22376668 original size:20 final size:20
Alignment explanation
Indices: 22376643--22376681 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22376633 AATGTTCTTT
22376643 CATTCTTTACGATTTTTTCC
1 CATTCTTTACGATTTTTTCC
**
22376663 CATTCTTTTGGATTTTTTC
1 CATTCTTTACGATTTTTTC
22376682 TGCCAAACCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.13, C:0.21, G:0.08, T:0.59
Consensus pattern (20 bp):
CATTCTTTACGATTTTTTCC
Found at i:22377593 original size:7 final size:7
Alignment explanation
Indices: 22377581--22377632 Score: 61
Period size: 7 Copynumber: 7.4 Consensus size: 7
22377571 AAATGACGAG
22377581 ATGAAAA
1 ATGAAAA
22377588 ATGAAAA
1 ATGAAAA
22377595 AGTG-AAA
1 A-TGAAAA
22377602 ATGAAAA
1 ATGAAAA
* *
22377609 CTAAAAA
1 ATGAAAA
22377616 ATGAAAA
1 ATGAAAA
*
22377623 AGGAAAA
1 ATGAAAA
22377630 ATG
1 ATG
22377633 GAGAGGCTAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
6 2 0.05
7 33 0.89
8 2 0.05
ACGTcount: A:0.67, C:0.02, G:0.17, T:0.13
Consensus pattern (7 bp):
ATGAAAA
Found at i:22379148 original size:43 final size:43
Alignment explanation
Indices: 22378968--22379291 Score: 127
Period size: 44 Copynumber: 7.4 Consensus size: 43
22378958 CTGAAGTTAT
* * *
22378968 AGTGGAGTACATTGAAGCCAGTAATTCTATCTCTCTGGGCAGC
1 AGTGGAGTAGATTGAAGCCAGTAATTCTACCTCCCTGGGCAGC
* ** * ** *
22379011 AGTGGAATAGATTGAAGATTA-TAGATTTTACCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAG-CCAGTA-ATTCTACCTCCCTGGGCAGC
* ** *** * * **
22379055 AGTGGAGCAGATCAAAGATGGTGGATTTTACCTCCCTAAGGTTA-C
1 AGTGGAGTAGATTGAAGCCAGT-AATTCTACCTCCCT--GGGCAGC
* *
22379100 AGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGC
1 AGTGGAGTAGATTGAAGCCAGTAATTCTACCTCCCTGGGCAGC
* * * ** *
22379143 AGTGGAATAGATTGAAG--ATTACAGATCTTACCTCCCTAAGCAGT
1 AGTGGAGTAGATTGAAGCCAGTA-A-TTC-TACCTCCCTGGGCAGC
* * *** ** * * *
22379187 AGTGGAGCAGATCGAAGATGGCGGATTTTACCTTCCTGAGGTTA-C
1 AGTGGAGTAGATTGAAGCCAG-TAATTCTACCTCCCTG-GG-CAGC
* * **
22379232 AGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCCAGGCAGC
1 AGTGGAGTAGATTGAAGCCAGTAATTCTACCTCCCTGGGCAGC
*
22379275 AGTGGAATAGATTGAAG
1 AGTGGAGTAGATTGAAG
22379292 ATTTCAGATA
Statistics
Matches: 193, Mismatches: 72, Indels: 32
0.65 0.24 0.11
Matches are distributed among these distances:
41 3 0.02
42 5 0.03
43 54 0.28
44 96 0.50
45 32 0.17
46 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (43 bp):
AGTGGAGTAGATTGAAGCCAGTAATTCTACCTCCCTGGGCAGC
Found at i:22379719 original size:44 final size:44
Alignment explanation
Indices: 22379667--22380015 Score: 135
Period size: 44 Copynumber: 7.9 Consensus size: 44
22379657 CTTCCCTGGT
22379667 CAGTAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTAAG
1 CAGTAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTAAG
** * * * * *
22379711 CAGTAGTGGAGCAGA-TCAAGGATGGCAGATTTTACCTCCTTGAG
1 CAGTAGTGGAATAGATTGAA-GATTGCAGATCTTACCTCCCTAAG
* * * * **
22379755 --GTTACAGTGGAGTACATTGAAGCCAAT--A-AT-TCTATCTCCCTGGG
1 CAG-T--AGTGGAATAGATTGAAG--ATTGCAGATCT-TACCTCCCTAAG
* * *
22379799 CAGCAGTGGAATAGATTAAAGATTACAGATCTTACCTCCCTAAG
1 CAGTAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTAAG
* ** * ** *
22379843 CAGTAGTGGAACAGATCAAAGATGGTGGATTTTACCTCCCTAAG
1 CAGTAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTAAG
* * *** * * * * **
22379887 --GTTACAGTGGAGTATATTGAAGCCAGTA-AT-TCTATCTTCATGGG
1 CAG-T--AGTGGAATAGATTGAAGATTGCAGATCT-TACCTCCCTAAG
* *
22379931 AAGTAGTGGAATAGATTGAAGATTACAGATCTTACCTCCCTAAG
1 CAGTAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTAAG
* ** * * * *
22379975 CAGTAGTAGAGCAGATCGAAGATGGCGGATTTTACCTCCCT
1 CAGTAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCT
22380016 GAGGTTACAG
Statistics
Matches: 217, Mismatches: 66, Indels: 44
0.66 0.20 0.13
Matches are distributed among these distances:
41 2 0.01
42 2 0.01
43 38 0.18
44 141 0.65
45 28 0.13
46 5 0.02
47 1 0.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
CAGTAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTAAG
Found at i:22380379 original size:44 final size:44
Alignment explanation
Indices: 22380326--22380657 Score: 137
Period size: 44 Copynumber: 7.5 Consensus size: 44
22380316 ACTTCCCTGG
* *
22380326 GCAGCAGTGGAATAGATTGAAGATTACAGATCTTACCTCCCTAA
1 GCAGTAGTGGAGTAGATTGAAGATTACAGATCTTACCTCCCTAA
* * * * *
22380370 GCAGTAGTGGAGCAGA-TCAAGGATGACAGATTTTACCTCCCTGA
1 GCAGTAGTGGAGTAGATTGAA-GATTACAGATCTTACCTCCCTAA
* * * * **
22380414 G--GTTACAGTGGAGTACATTGAAGCCAGTA-A-TTC-TATCTCCCTGG
1 GCAG-T--AGTGGAGTAGATTGAAG--ATTACAGATCTTACCTCCCTAA
** * *
22380458 GCAACAGTGGAATAGATTGAAGATTACAGATCTTACCTCCTTAA
1 GCAGTAGTGGAGTAGATTGAAGATTACAGATCTTACCTCCCTAA
** **** * *
22380502 GCAGTAGTGGAGTAGATCAAAGATGGTGGATTTTACCTCCCTGA
1 GCAGTAGTGGAGTAGATTGAAGATTACAGATCTTACCTCCCTAA
* * * * ** **
22380546 G--GTTACAGTGGAGTACATTGAAGCCAGTA-A-TTC-TATCTCATTTG
1 GCAG-T--AGTGGAGTAGATTGAAG--ATTACAGATCTTACCTCCCTAA
* * *
22380590 GCAGCAGTGGAATAGATTGAAGGTTACAGATCTTACCTCCCTAA
1 GCAGTAGTGGAGTAGATTGAAGATTACAGATCTTACCTCCCTAA
* * *
22380634 GCAGTAATGGAGCAGATCGAAGAT
1 GCAGTAGTGGAGTAGATTGAAGAT
22380658 GGCGGATTTT
Statistics
Matches: 197, Mismatches: 69, Indels: 44
0.64 0.22 0.14
Matches are distributed among these distances:
41 5 0.03
42 4 0.02
43 39 0.20
44 115 0.58
45 26 0.13
46 5 0.03
47 3 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (44 bp):
GCAGTAGTGGAGTAGATTGAAGATTACAGATCTTACCTCCCTAA
Found at i:22381547 original size:132 final size:132
Alignment explanation
Indices: 22378947--22381536 Score: 3521
Period size: 132 Copynumber: 19.6 Consensus size: 132
22378937 TTGATGGCAT
* * *
22378947 ATTTTACCTCCCTGAAGTTATAGTGGAGTACATTGAAGCCAGTAATTCTATCTCTCTGGGCAGCA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* *
22379012 GTGGAATAGATTGAAGATTAT-AGATTTTACCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
66 GTGGAATAGATTGAAGATT-TCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
*
22379076 TGG
130 CGG
*
22379079 ATTTTACCTCCCTAAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * *
22379144 GTGGAATAGATTGAAGATTACAGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGC
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
22379209 GG
131 GG
* **
22379211 ATTTTACCTTCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCCAGGCAGCA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * * *
22379276 GTGGAATAGATTGAAGATTTCAGATATTGTCTCCCTAAGCAGTAGCGGAGCAGGTCAAAGATGGT
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
22379341 GG
131 GG
* * *
22379343 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTA-CTTCCCTGGGCAAC
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGC
** * * * *
22379407 AGTGGAATAGATTGAAGATTTTGGATCTTGTCTCCCTAAACAGTAGTAGAGCAGGTCAAAGATGG
65 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
22379472 CGG
130 CGG
* * ** *
22379475 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTA-CTTCCCTAAGCAGT
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGC
* * * * *
22379539 AGTGGAATAGATTGAGGATTTTAGATATTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGG
65 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
* *
22379604 TGA
130 CGG
** *
22379607 ATTTTACCTCCCT-ATGGTTGTAGTGGAGTACATTGAAGCCAGTAATTCTA-CTTCCCTGGTCAG
1 ATTTTACCTCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAG
* * * *
22379670 TAGTGGAATAGATTGAAGATTGCAGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATG
64 CAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATG
*
22379735 GCAG
129 GCGG
* *
22379739 ATTTTACCTCCTTGAGGTTACAGTGGAGTACATTGAAGCCAATAATTCTATCTCCCTGGGCAGCA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * * *
22379804 GTGGAATAGATTAAAGATTACAGATCTTACCTCCCTAAGCAGTAGTGGAACAGATCAAAGATGGT
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
22379869 GG
131 GG
* * * * * *
22379871 ATTTTACCTCCCTAAGGTTACAGTGGAGTATATTGAAGCCAGTAATTCTATCTTCATGGGAAGTA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * *
22379936 GTGGAATAGATTGAAGATTACAGATCTTACCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGC
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
22380001 GG
131 GG
* *
22380003 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTAGGCAACA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * * *
22380068 GTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCAGTAGCGGAGCAGGTTAAAGATGGC
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
22380133 GG
131 GG
* * * * *
22380135 ATTTTACCTCCCTGTGGTTACAGTAGAGTATATTGAAGCCAATAATTCTA-CTTCCTTGGGCAGC
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGC
** * * *
22380199 AGTGGAATAGATTGAAGATTTTGGATCTTGTCTCCCTAAACAGTAGTGGAGCAGGTCAAAGATGG
65 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
22380264 CGG
130 CGG
* *
22380267 ATTTTACCTCCCT-ATGGTTGCAGTGGAGTACATTGAAGCCATTAATTCTA-CTTCCCTGGGCAG
1 ATTTTACCTCCCTGA-GGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAG
* * *
22380330 CAGTGGAATAGATTGAAGATTACAGATCTTACCTCCCTAAGCAGTAGTGGAGCAGATCAAGGATG
64 CAGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATG
* *
22380395 ACAG
129 GCGG
*
22380399 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAACA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * * *
22380464 GTGGAATAGATTGAAGATTACAGATCTTACCTCCTTAAGCAGTAGTGGAGTAGATCAAAGATGGT
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
22380529 GG
131 GG
** *
22380531 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCATTTGGCAGCA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * * *
22380596 GTGGAATAGATTGAAGGTTACAGATCTTACCTCCCTAAGCAGTAATGGAGCAGATCGAAGATGGC
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
22380661 GG
131 GG
* * *
22380663 ATTTTACTTCCCTGAGGTTACAGTGGAGTACATTAAAGCCAGTAATTCTATCTCCCTGGGCAGTA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * * * *
22380728 GTGGAATAGATTGAAGGTTTCAGATCTTGTCTCCCCAAGTAGTAGCGGAGCATG-TCAAAGATGA
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCA-GATCAAAGATGG
22380792 CGG
130 CGG
* * *
22380795 ATTTTACCTCCCTGTGGTTACAATGGAGTACATTGAAGCCAATAATTCTA-CTTCCCTGGGCAGC
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGC
** * * * * *
22380859 AGTGGAATAGATTGAAGATTTTGGATCTTGTCTCCTTAAACAGTAGTGGAGCAGGTCAAAGATAG
65 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
*
22380924 CAG
130 CGG
* * * *
22380927 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAATAATTCTA-CTTCCCTGAGCAGT
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGC
* * * * *
22380991 AGTGGAATAGATTGAGGATTTTAGATCTTATCTCCCCAAGCAGTAGTGGAACAGATCAAAAATGG
65 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
* *
22381056 TGA
130 CGG
* * * * *
22381059 ATTTTACCTCCCTGTGGTTGCAGTGGAGTACATTGAATCTAGTAATTCTA-CTTTCCTGGGCAGC
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATC-TCCCTGGGCAGC
* * * *
22381123 AGTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCAATAGTGGAGCAGATCAAAGATGA
65 AGTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGG
* *
22381188 TGA
130 CGG
* * *
22381191 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGTGCAACA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * *
22381256 GTGGAATAGATTGAAGATTTCAGATCTTGTCTCCCCAAGCAGTAGTGGAGCAGATCAAAGATGGT
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
*
22381321 GA
131 GG
* *
22381323 ATTTTACCTCCCTGTGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCTCTGGGCAGCA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
* * * *
22381388 GTGGAATAGATTGAAGATTACAGATCTTATCTTCCTAGGCAGTAGTGGAGCAGATCGAAGATGGC
66 GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
*
22381453 AG
131 GG
* * * *
22381455 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCTCTAGTCGGCA
1 ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
*
22381520 GTGGAATCGATTGAAGA
66 GTGGAATAGATTGAAGA
22381537 AAGCAGATCT
Statistics
Matches: 2204, Mismatches: 241, Indels: 26
0.89 0.10 0.01
Matches are distributed among these distances:
131 4 0.00
132 2194 1.00
133 6 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (132 bp):
ATTTTACCTCCCTGAGGTTACAGTGGAGTACATTGAAGCCAGTAATTCTATCTCCCTGGGCAGCA
GTGGAATAGATTGAAGATTTCAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGATGGC
GG
Found at i:22383156 original size:3 final size:3
Alignment explanation
Indices: 22383143--22383213 Score: 56
Period size: 3 Copynumber: 23.0 Consensus size: 3
22383133 TTACTATTTA
*
22383143 ATT ATTT ATT ATT A-T ATT A-T ACTT GTTT ATT ATT ATT ATT ATTT ATT
1 ATT A-TT ATT ATT ATT ATT ATT A-TT -ATT ATT ATT ATT ATT A-TT ATT
* * *
22383190 ATT ATT AAT ATT GTA ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT
22383214 TTCGTGTACA
Statistics
Matches: 54, Mismatches: 8, Indels: 12
0.73 0.11 0.16
Matches are distributed among these distances:
2 4 0.07
3 41 0.76
4 9 0.17
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:22383178 original size:16 final size:15
Alignment explanation
Indices: 22383137--22383194 Score: 59
Period size: 16 Copynumber: 3.9 Consensus size: 15
22383127 ACTATTTTAC
22383137 TATTTAATTATT-TAT
1 TATTT-ATTATTATAT
22383152 TA-TTA-TATTATACT
1 TATTTATTATTATA-T
*
22383166 TGTTTATTATTATTAT
1 TATTTATTATTA-TAT
22383182 TATTTATTATTAT
1 TATTTATTATTAT
22383195 TAATATTGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
12 4 0.11
13 3 0.08
14 4 0.11
15 6 0.17
16 17 0.47
17 2 0.06
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (15 bp):
TATTTATTATTATAT
Found at i:22383188 original size:10 final size:10
Alignment explanation
Indices: 22383143--22383195 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
22383133 TTACTATTTA
22383143 ATTATTTATT
1 ATTATTTATT
22383153 ATTA--TATT
1 ATTATTTATT
22383161 A-TACTTGT-TT
1 ATTA-TT-TATT
22383171 ATTA-TTATT
1 ATTATTTATT
22383180 ATTATTTATT
1 ATTATTTATT
22383190 ATTATT
1 ATTATT
22383196 AATATTGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 14
0.72 0.00 0.28
Matches are distributed among these distances:
7 2 0.06
8 6 0.17
9 7 0.19
10 18 0.50
11 3 0.08
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.66
Consensus pattern (10 bp):
ATTATTTATT
Found at i:22383188 original size:13 final size:13
Alignment explanation
Indices: 22383143--22383196 Score: 53
Period size: 13 Copynumber: 4.3 Consensus size: 13
22383133 TTACTATTTA
22383143 ATTATTTATTATT
1 ATTATTTATTATT
22383156 A-TA-TTA-TACTT
1 ATTATTTATTA-TT
*
22383167 GTT-TATTATTATT
1 ATTAT-TTATTATT
22383180 ATTATTTATTATT
1 ATTATTTATTATT
22383193 ATTA
1 ATTA
22383197 ATATTGTAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 12
0.70 0.04 0.26
Matches are distributed among these distances:
10 2 0.06
11 5 0.15
12 3 0.09
13 20 0.61
14 3 0.09
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (13 bp):
ATTATTTATTATT
Done.