Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 77 of 173
Found at i:23807221 original size:14 final size:14
Alignment explanation
Indices: 23807193--23807221 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
23807183 GCTTAGTGGC
23807193 TTTTGACTTGATTT
1 TTTTGACTTGATTT
23807207 TTTTG-CTTGATTT
1 TTTTGACTTGATTT
23807220 TT
1 TT
23807222 AAACAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.10, C:0.07, G:0.14, T:0.69
Consensus pattern (14 bp):
TTTTGACTTGATTT
Found at i:23816807 original size:19 final size:20
Alignment explanation
Indices: 23816783--23816826 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
23816773 AGGCTTGTAG
*
23816783 AGGGGA-CAAATGAGAAAAA
1 AGGGGATCAAAGGAGAAAAA
**
23816802 AGGGGATCAAAGGAGTGAAA
1 AGGGGATCAAAGGAGAAAAA
23816822 AGGGG
1 AGGGG
23816827 GGGCTTAATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 6 0.29
20 15 0.71
ACGTcount: A:0.48, C:0.05, G:0.41, T:0.07
Consensus pattern (20 bp):
AGGGGATCAAAGGAGAAAAA
Found at i:23819256 original size:49 final size:50
Alignment explanation
Indices: 23819131--23819259 Score: 158
Period size: 48 Copynumber: 2.6 Consensus size: 50
23819121 ATTTTTGGAT
* * * * *
23819131 AAGCCACCACTGATTTGCATATAAACTACCACTGATAATACTTTTTGGAC
1 AAGCCACAACTGATTTGCAGATAAACTACCACTGATAAGACTTTGTGAAC
* *
23819181 AAGCCA-ACAC--ATATGCAGATATACTACCACTGA-AAGACTTTGTGAAC
1 AAGCCACA-ACTGATTTGCAGATAAACTACCACTGATAAGACTTTGTGAAC
23819228 AAGCCACAACTGATTTGCAGATAAACTACCAC
1 AAGCCACAACTGATTTGCAGATAAACTACCAC
23819260 ATACTTCCAC
Statistics
Matches: 66, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
47 19 0.29
48 21 0.32
49 18 0.27
50 8 0.12
ACGTcount: A:0.38, C:0.25, G:0.13, T:0.24
Consensus pattern (50 bp):
AAGCCACAACTGATTTGCAGATAAACTACCACTGATAAGACTTTGTGAAC
Found at i:23828955 original size:76 final size:76
Alignment explanation
Indices: 23828829--23828983 Score: 292
Period size: 76 Copynumber: 2.0 Consensus size: 76
23828819 CTGAATATTA
* *
23828829 CCATCTTCATTTCTTGCTTCAATTCAAGACAAGTGATCAGCCACTTGATTTTTTATCCCTTTCCT
1 CCATCTTCATTTCCTGCTTCAATTCAAGACAAGTGATCAGCCACTTGATTTTCTATCCCTTTCCT
23828894 ATCTCTAATTT
66 ATCTCTAATTT
23828905 CCATCTTCATTTCCTGCTTCAATTCAAGACAAGTGATCAGCCACTTGATTTTCTATCCCTTTCCT
1 CCATCTTCATTTCCTGCTTCAATTCAAGACAAGTGATCAGCCACTTGATTTTCTATCCCTTTCCT
23828970 ATCTCTAATTT
66 ATCTCTAATTT
23828981 CCA
1 CCA
23828984 AATCAAATTC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
76 77 1.00
ACGTcount: A:0.23, C:0.28, G:0.08, T:0.41
Consensus pattern (76 bp):
CCATCTTCATTTCCTGCTTCAATTCAAGACAAGTGATCAGCCACTTGATTTTCTATCCCTTTCCT
ATCTCTAATTT
Found at i:23832080 original size:79 final size:81
Alignment explanation
Indices: 23831944--23832128 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
23831934 TTGAATGATG
* *
23831944 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
23832008 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
23832023 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
23832085 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
23832103 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
23832129 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:23832142 original size:40 final size:40
Alignment explanation
Indices: 23831945--23832128 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
23831935 TGAATGATGT
* * * *
23831945 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
23831985 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
23832025 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
23832063 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
23832104 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
23832129 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:23832150 original size:79 final size:79
Alignment explanation
Indices: 23831997--23832161 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
23831987 GGACTAAGAT
* * **
23831997 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
23832062 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
23832076 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
23832139 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
23832155 CCGAAGG
1 CCGAAGG
23832162 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:23842432 original size:26 final size:26
Alignment explanation
Indices: 23842372--23842451 Score: 97
Period size: 26 Copynumber: 3.1 Consensus size: 26
23842362 GCCAACACAC
* * * *
23842372 CAATATCGCATCAAAGCTTCCAGAAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
* *
23842398 TAATGACGCAGCAAAGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
*
23842424 CAATAACGCAGCAAGGCTGCCAGTAA
1 CAATAACGCAGCAAAGCTGCCAGTAA
23842450 CA
1 CA
23842452 GTATATGTGA
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.40, C:0.26, G:0.19, T:0.15
Consensus pattern (26 bp):
CAATAACGCAGCAAAGCTGCCAGTAA
Found at i:23842685 original size:27 final size:27
Alignment explanation
Indices: 23842626--23842983 Score: 443
Period size: 27 Copynumber: 13.3 Consensus size: 27
23842616 GAGTATAACA
* * *
23842626 GTCATTTTACCCTATTGGGGGTATTTTG
1 GTCATTTTACCCT-TCGAGGGTATTTCG
*
23842654 ATCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
23842681 GTCATTTTACCCTTTGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
23842708 GTCATTTTACCCTTCAAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* *
23842735 GTCATTTTACCTTTCGAGGGTATTAT-A
1 GTCATTTTACCCTTCGAGGGTATT-TCG
23842762 GTCATTTTACCCTTCGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* * **
23842789 ATCAGTTTACCCTTCGAGGGTATTTTA
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
23842816 GTCATTTTACCCTTCGAGGGTATTTCA
1 GTCATTTTACCCTTCGAGGGTATTTCG
* *
23842843 GTCAGTTTA-CCTTCAAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* *
23842869 ATCATTTTACCCTTCGGGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* * **
23842896 ATCATTTTACCCTTCGGGGGTATTTTA
1 GTCATTTTACCCTTCGAGGGTATTTCG
* *
23842923 GTTATTTTACCCTTTGAGGGTATTTCG
1 GTCATTTTACCCTTCGAGGGTATTTCG
* *
23842950 GTCATTTTACCCTTC-AGGATATTTCA
1 GTCATTTTACCCTTCGAGGGTATTTCG
*
23842976 TTCATTTT
1 GTCATTTT
23842984 GCCCACGAAT
Statistics
Matches: 287, Mismatches: 40, Indels: 8
0.86 0.12 0.02
Matches are distributed among these distances:
26 39 0.14
27 235 0.82
28 13 0.05
ACGTcount: A:0.18, C:0.19, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTTCGAGGGTATTTCG
Found at i:23843671 original size:40 final size:40
Alignment explanation
Indices: 23843627--23843704 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 40
23843617 AGAAGGACAT
*
23843627 TCGGCCAAAGAA-A-AAGAAGAGAAGAGAAAAGTGATTCGGC
1 TCGG-CAAAGAAGAGAAG-AGAGAAGAGAAAAGGGATTCGGC
* *
23843667 TCGGCAGAGAAGAGAAGAGTGAAGAGAAAAGGGATTCG
1 TCGGCAAAGAAGAGAAGAGAGAAGAGAAAAGGGATTCG
23843705 ACAAAGATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
39 6 0.18
40 24 0.73
41 3 0.09
ACGTcount: A:0.45, C:0.10, G:0.35, T:0.10
Consensus pattern (40 bp):
TCGGCAAAGAAGAGAAGAGAGAAGAGAAAAGGGATTCGGC
Found at i:23844860 original size:79 final size:79
Alignment explanation
Indices: 23844729--23844894 Score: 271
Period size: 79 Copynumber: 2.1 Consensus size: 79
23844719 ATACCATTTC
* *
23844729 CTTCTTTTAGGGTCCACCACAGAGGCATTGCCTTCAGATGGTTGCCACAAAGGTCATTCTTTAGA
1 CTTCTCTTAGGGTCCACCACAAAGGCATTGCCTTCAGATGGTTGCCACAAAGGTCATTCTTTAGA
*
23844794 GTGTGCCGAAAAGG
66 GTGCGCCGAAAAGG
* *
23844808 CTTCTCTTAGGGTCGACCACAAATGCATTGCCTTCAGATGGTTGCCACAAAGGTCATTCTTTAGA
1 CTTCTCTTAGGGTCCACCACAAAGGCATTGCCTTCAGATGGTTGCCACAAAGGTCATTCTTTAGA
*
23844873 GTGCGTCGAAAAGG
66 GTGCGCCGAAAAGG
23844887 CTTC-CTTA
1 CTTCTCTTA
23844895 TCATAGATCG
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
78 4 0.05
79 77 0.95
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.29
Consensus pattern (79 bp):
CTTCTCTTAGGGTCCACCACAAAGGCATTGCCTTCAGATGGTTGCCACAAAGGTCATTCTTTAGA
GTGCGCCGAAAAGG
Found at i:23844976 original size:27 final size:27
Alignment explanation
Indices: 23844919--23845003 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
23844909 AAAGGATTCC
* * * * * *
23844919 TTTTTATAGTTTTCCATAAATGCTTCC
1 TTTTCATAGATTTCCACAAAGGCATCA
23844946 TTTTCATAGATTTCCACAAAGGC-TCTA
1 TTTTCATAGATTTCCACAAAGGCATC-A
23844973 TTTTCATAGATTTCCACAAAGGCATCA
1 TTTTCATAGATTTCCACAAAGGCATCA
23845000 TTTT
1 TTTT
23845004 TCTAGCGTGT
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 2 0.04
27 47 0.92
28 2 0.04
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.44
Consensus pattern (27 bp):
TTTTCATAGATTTCCACAAAGGCATCA
Found at i:23845522 original size:61 final size:61
Alignment explanation
Indices: 23845447--23845573 Score: 220
Period size: 61 Copynumber: 2.1 Consensus size: 61
23845437 TGCAAAGTCC
23845447 ATCAAACATTCATGCAATAGCATAATCATCATACCATACTTTTCTAGTTTC-AGTTTCATAG
1 ATCAAACATTCATGCAATAGCATAATCATCATACCATACTTTTCTAGTTTCGA-TTTCATAG
* *
23845508 ATCAAACATTCATGCAATAGCATAATCATCATACTATGCTTTTCTAGTTTCGATTTCATAG
1 ATCAAACATTCATGCAATAGCATAATCATCATACCATACTTTTCTAGTTTCGATTTCATAG
23845569 ATCAA
1 ATCAA
23845574 TCACCTTCAT
Statistics
Matches: 63, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
61 62 0.98
62 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.09, T:0.36
Consensus pattern (61 bp):
ATCAAACATTCATGCAATAGCATAATCATCATACCATACTTTTCTAGTTTCGATTTCATAG
Found at i:23850776 original size:26 final size:26
Alignment explanation
Indices: 23850743--23850811 Score: 86
Period size: 26 Copynumber: 2.7 Consensus size: 26
23850733 TGCTAATACA
* *
23850743 ACACCAGCACAAAGCCTTCTAAATGT
1 ACACCAGCACAAAGCCTGCTAAATAT
* *
23850769 ACATCAGCTA-GAAGCCTGCTAAATAT
1 ACACCAGC-ACAAAGCCTGCTAAATAT
23850795 ACACCAGCACAAAGCCT
1 ACACCAGCACAAAGCCT
23850812 ACTACGCCCT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
25 1 0.03
26 33 0.94
27 1 0.03
ACGTcount: A:0.39, C:0.30, G:0.13, T:0.17
Consensus pattern (26 bp):
ACACCAGCACAAAGCCTGCTAAATAT
Found at i:23851437 original size:42 final size:42
Alignment explanation
Indices: 23851391--23851480 Score: 153
Period size: 42 Copynumber: 2.1 Consensus size: 42
23851381 AAAATTAACT
* *
23851391 AAAATCACTTTACAAAATAGTCCTATTTAACCATCAGGCTTA
1 AAAATCACTTTACAAAATAGTACTATTTAACCATCAAGCTTA
23851433 AAAATCACTTTACAAAATAGTACTATTTAACCATCAAGCTTA
1 AAAATCACTTTACAAAATAGTACTATTTAACCATCAAGCTTA
*
23851475 ATAATC
1 AAAATC
23851481 CATCATAAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.43, C:0.20, G:0.06, T:0.31
Consensus pattern (42 bp):
AAAATCACTTTACAAAATAGTACTATTTAACCATCAAGCTTA
Found at i:23867974 original size:16 final size:17
Alignment explanation
Indices: 23867947--23867981 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
23867937 AGAGACTTGA
23867947 GAGAGAGGATGAGAGAT
1 GAGAGAGGATGAGAGAT
*
23867964 GAGAG-GGATGAGGGAT
1 GAGAGAGGATGAGAGAT
23867980 GA
1 GA
23867982 TTGAAGAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.37, C:0.00, G:0.51, T:0.11
Consensus pattern (17 bp):
GAGAGAGGATGAGAGAT
Found at i:23872008 original size:20 final size:20
Alignment explanation
Indices: 23871983--23872022 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
23871973 ACCCCCTTTA
23871983 TTAACATAAA-AATTTAAATT
1 TTAACA-AAATAATTTAAATT
23872003 TTAACAAAATAATTTAAATT
1 TTAACAAAATAATTTAAATT
23872023 AGAAAAACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 3 0.16
20 16 0.84
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (20 bp):
TTAACAAAATAATTTAAATT
Found at i:23878265 original size:16 final size:16
Alignment explanation
Indices: 23878244--23878275 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
23878234 TGATTGAAAG
*
23878244 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
23878260 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
23878276 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:23883863 original size:45 final size:45
Alignment explanation
Indices: 23883782--23884001 Score: 254
Period size: 45 Copynumber: 5.0 Consensus size: 45
23883772 AACAATTACA
* * * *
23883782 CGGTGG-ATCAACACATAGC-ACCACCCTTATAATCAATTATATT
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATATC
* **
23883825 CGGTGGAATCAGCACATAACAACCACCTTTATTTTCAATGACT-T-
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGA-TATC
* * *
23883869 CGGTGGAGTCAGCACATAGCAACCACCTTTATAATCAA-AAGTACC
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGA-TATC
*
23883914 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGGTA-C
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATATC
**
23883958 CAAATGGAATCAGCACATAGCAACCACCTTTATAATCAATGATA
1 C-GGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATA
23884002 CTCAGTACAC
Statistics
Matches: 151, Mismatches: 19, Indels: 12
0.83 0.10 0.07
Matches are distributed among these distances:
43 8 0.05
44 47 0.31
45 95 0.63
46 1 0.01
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.25
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATATC
Found at i:23883952 original size:89 final size:88
Alignment explanation
Indices: 23883782--23884002 Score: 261
Period size: 89 Copynumber: 2.5 Consensus size: 88
23883772 AACAATTACA
* * * **
23883782 CGGTGGATCAACACATAGC-ACCACCCTTATAATCAATTATATTCGGTGGAATCAGCACATAACA
1 CGGTGGATCAGCACATAGCAACCACCTTTATAATCAATAATACCCGGTGGAATCAGCACATAACA
**
23883846 ACCACCTTTATTTTCAAT-G-AC
66 ACCACCTTTATAATCAATGGTAC
23883867 TTCGGTGGAGTCAGCACATAGCAACCACCTTTATAATCAA-AAGTACCCGGTGGAATCAGCACAT
1 --CGGTGGA-TCAGCACATAGCAACCACCTTTATAATCAATAA-TACCCGGTGGAATCAGCACAT
*
23883931 AGCAACCACCTTTATAATCAATGGTAC
62 AACAACCACCTTTATAATCAATGGTAC
** *
23883958 CAAATGGAATCAGCACATAGCAACCACCTTTATAATCAATGATAC
1 C-GGTGG-ATCAGCACATAGCAACCACCTTTATAATCAATAATAC
23884003 TCAGTACACG
Statistics
Matches: 115, Mismatches: 11, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
87 7 0.06
88 12 0.10
89 55 0.48
90 37 0.32
91 4 0.03
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.24
Consensus pattern (88 bp):
CGGTGGATCAGCACATAGCAACCACCTTTATAATCAATAATACCCGGTGGAATCAGCACATAACA
ACCACCTTTATAATCAATGGTAC
Found at i:23902258 original size:5 final size:5
Alignment explanation
Indices: 23902250--23902297 Score: 60
Period size: 5 Copynumber: 8.8 Consensus size: 5
23902240 GGGTTAGGGT
23902250 TTTTC TTTTC TTTTC TTTTCCC TTTTC TTTTC TTTTTC TTTTC ATTTT
1 TTTTC TTTTC TTTTC TTTT--C TTTTC TTTTC -TTTTC TTTTC -TTTT
23902298 TAGTTTAGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
5 25 0.64
6 9 0.23
7 5 0.13
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTTC
Found at i:23902278 original size:22 final size:23
Alignment explanation
Indices: 23902250--23902292 Score: 79
Period size: 22 Copynumber: 1.9 Consensus size: 23
23902240 GGGTTAGGGT
23902250 TTTTCTTTTC-TTTTCTTTTCCC
1 TTTTCTTTTCTTTTTCTTTTCCC
23902272 TTTTCTTTTCTTTTTCTTTTC
1 TTTTCTTTTCTTTTTCTTTTC
23902293 ATTTTTAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 10 0.50
23 10 0.50
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (23 bp):
TTTTCTTTTCTTTTTCTTTTCCC
Found at i:23902297 original size:17 final size:16
Alignment explanation
Indices: 23902249--23902297 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 16
23902239 AGGGTTAGGG
23902249 TTTTTCTTTTCTTTTC
1 TTTTTCTTTTCTTTTC
*
23902265 TTTTCCCTTTTCTTTTC
1 TTTT-TCTTTTCTTTTC
23902282 TTTTTCTTTTCATTTT
1 TTTTTCTTTTC-TTTT
23902298 TAGTTTAGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
16 10 0.34
17 19 0.66
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTTTCTTTTCTTTTC
Found at i:23902297 original size:22 final size:22
Alignment explanation
Indices: 23902250--23902297 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
23902240 GGGTTAGGGT
*
23902250 TTTTCTTTTCTTTTCTTTTCCC
1 TTTTCTTTTCTTTTCTTTTCCA
23902272 TTTTCTTTTCTTTTTCTTTT-CA
1 TTTTCTTTTC-TTTTCTTTTCCA
23902294 TTTT
1 TTTT
23902298 TAGTTTAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTCTTTTCTTTTCTTTTCCA
Found at i:23905768 original size:50 final size:50
Alignment explanation
Indices: 23905704--23905801 Score: 196
Period size: 50 Copynumber: 2.0 Consensus size: 50
23905694 AATACAATCA
23905704 CAAGATATAATTTCATAATTTAAACAAATCCAATACATTTACAAACATCT
1 CAAGATATAATTTCATAATTTAAACAAATCCAATACATTTACAAACATCT
23905754 CAAGATATAATTTCATAATTTAAACAAATCCAATACATTTACAAACAT
1 CAAGATATAATTTCATAATTTAAACAAATCCAATACATTTACAAACAT
23905802 AACTACAGCA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.49, C:0.17, G:0.02, T:0.32
Consensus pattern (50 bp):
CAAGATATAATTTCATAATTTAAACAAATCCAATACATTTACAAACATCT
Found at i:23926477 original size:24 final size:24
Alignment explanation
Indices: 23926450--23926535 Score: 109
Period size: 24 Copynumber: 3.5 Consensus size: 24
23926440 AATGACAAAT
* ** *
23926450 AATTAATATATTAAATTTTAGAAA
1 AATTAATATATTAATTTTTCTAGA
*
23926474 AATTTATATATTAATTTTTCTAGA
1 AATTAATATATTAATTTTTCTAGA
23926498 AATTAATATATATAATTTTTTCTAGA
1 AATTAATATAT-TAA-TTTTTCTAGA
23926524 AATTAATATATT
1 AATTAATATATT
23926536 TTGAAATTTA
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
24 29 0.54
25 4 0.07
26 21 0.39
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.49
Consensus pattern (24 bp):
AATTAATATATTAATTTTTCTAGA
Found at i:23926865 original size:11 final size:11
Alignment explanation
Indices: 23926850--23926909 Score: 65
Period size: 11 Copynumber: 5.6 Consensus size: 11
23926840 AAAATAAAAA
23926850 AAAAAGTATTTT
1 AAAAA-TATTTT
23926862 AAAAATATTTT
1 AAAAATATTTT
*
23926873 AAAAATA---A
1 AAAAATATTTT
23926881 AAAAATATTTT
1 AAAAATATTTT
23926892 -AAAATATTTTT
1 AAAAATA-TTTT
23926903 AAAAATA
1 AAAAATA
23926910 AAAAATATAT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 7 0.17
10 6 0.15
11 17 0.41
12 11 0.27
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:23926890 original size:30 final size:31
Alignment explanation
Indices: 23926848--23926924 Score: 113
Period size: 30 Copynumber: 2.5 Consensus size: 31
23926838 AGAAAATAAA
23926848 AAAAAAAGTATTTTAAAAATA-TTTTAAAAAT
1 AAAAAAA-TATTTTAAAAATATTTTTAAAAAT
23926879 AAAAAAATATTTT-AAAATATTTTTAAAAAT
1 AAAAAAATATTTTAAAAATATTTTTAAAAAT
23926909 AAAAAATATATATTTA
1 AAAAAA-ATAT-TTTA
23926925 TTATATTCGG
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
29 6 0.14
30 22 0.52
31 11 0.26
32 3 0.07
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (31 bp):
AAAAAAATATTTTAAAAATATTTTTAAAAAT
Found at i:23934963 original size:11 final size:13
Alignment explanation
Indices: 23934947--23934980 Score: 54
Period size: 11 Copynumber: 2.8 Consensus size: 13
23934937 AATTCCACGA
23934947 AAAAATTTCG-T-
1 AAAAATTTCGTTC
23934958 AAAAATTTCGTTC
1 AAAAATTTCGTTC
23934971 AAAAATTTCG
1 AAAAATTTCG
23934981 ATGTTTGGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 10 0.48
12 1 0.05
13 10 0.48
ACGTcount: A:0.44, C:0.12, G:0.09, T:0.35
Consensus pattern (13 bp):
AAAAATTTCGTTC
Found at i:23936112 original size:51 final size:51
Alignment explanation
Indices: 23936036--23936374 Score: 257
Period size: 51 Copynumber: 6.7 Consensus size: 51
23936026 GATGAACACG
* * *
23936036 TGTGTAGTATTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGTCACA
* * * * * * * *
23936087 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCAAGAAGTTTTGAG-CACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTG-GTCACA
* * * * *
23936138 TGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTACACTA-TGGTTACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATA-AATATTGGTCACA
* * * * *
23936189 TGTGTGGTACTAAGTGAAGGCTACTATG-GATAACAGA-AAGCT-TTGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTG-TATC-GATAA-ATATTGGTCACA
* * * * *
23936240 TATGTAGTACTATGTGAAGGCTACTACGTG-AGCCATAAA-ACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-TTGGTCACA
* * * * *
23936290 TGTGTAGTACTATGTGAAGGCTACTAGGTG-AACTG-TAAA-ACTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAAATATTGGTCACA
*
23936339 TGTGTAGTACTATGTGAATGCTACTACGTGTATCGA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
23936375 ATGATAAAAA
Statistics
Matches: 226, Mismatches: 48, Indels: 29
0.75 0.16 0.10
Matches are distributed among these distances:
49 38 0.17
50 51 0.23
51 132 0.58
52 5 0.02
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGTCACA
Found at i:23936208 original size:102 final size:102
Alignment explanation
Indices: 23936032--23936374 Score: 355
Period size: 102 Copynumber: 3.4 Consensus size: 102
23936022 TATCGATGAA
*
23936032 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
* *
23936097 TAAGTGAAGGCTACTATGTG-TACCA-AGAAGTTTTGAG-
66 TAAGTGAAGGCTACTATG-GATAACAGA-AAGCTTTG-GT
* * * * *
23936134 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTACACT-ATGGTTACATGTGTGGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATA-AATAATGGTCACATGTGTAGTA
23936198 CTAAGTGAAGGCTACTATGGATAACAGAAAGCTTTGGT
65 CTAAGTGAAGGCTACTATGGATAACAGAAAGCTTTGGT
* * * * * * * *
23936236 CACATATGTAGTACTATGTGAAGGCTACTACGTG-AGCCATAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA-ATGGTCACATGTGTAGTA
* * * *
23936299 CTATGTGAAGGCTACTA-GG-TGAACTGTAAAAC--TGAT
65 CTAAGTGAAGGCTACTATGGAT-AACAG-AAAGCTTTGGT
* *
23936335 CACGTGTGTAGTACTATGTGAATGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGA
23936375 ATGATAAAAA
Statistics
Matches: 202, Mismatches: 30, Indels: 20
0.80 0.12 0.08
Matches are distributed among these distances:
99 35 0.17
100 10 0.05
101 39 0.19
102 115 0.57
103 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGGATAACAGAAAGCTTTGGT
Found at i:23939889 original size:114 final size:114
Alignment explanation
Indices: 23939706--23940038 Score: 558
Period size: 114 Copynumber: 2.9 Consensus size: 114
23939696 AAACTTAAGC
* * * *
23939706 CCAACGACGCCGTTTTCTGAGCTTTCAAGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGT
1 CCAACGACGCCGTTTTATGAGCTTTCGAGGATTTAGCGGCGTTTTTATGAAAGCGCCGCTAATGC
23939771 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAATCACCTCAGT
66 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAATCACCTCAGT
* * *
23939820 CCAACGACGCCATTTTTTGAGCTTTCGGGGATTTAGCGGCGTTTTTATGAAAGCGCCGCTAATGC
1 CCAACGACGCCGTTTTATGAGCTTTCGAGGATTTAGCGGCGTTTTTATGAAAGCGCCGCTAATGC
*
23939885 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCTGCAAAATCACCTCAGT
66 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAATCACCTCAGT
23939934 CCAACGACGCCGTTTTATGAGCTTTCGAGGATTTAGCGGCGTTTTTATGAAAGCGCCGCTAATGC
1 CCAACGACGCCGTTTTATGAGCTTTCGAGGATTTAGCGGCGTTTTTATGAAAGCGCCGCTAATGC
* * *
23939999 ACAGGTCTTTAGCGGCGTTTTTCGGAAAGCGCCGCTAAAA
66 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGC-AAAA
23940039 ATATTTTATC
Statistics
Matches: 204, Mismatches: 14, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
114 200 0.98
115 4 0.02
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.28
Consensus pattern (114 bp):
CCAACGACGCCGTTTTATGAGCTTTCGAGGATTTAGCGGCGTTTTTATGAAAGCGCCGCTAATGC
TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAATCACCTCAGT
Found at i:23940337 original size:8 final size:7
Alignment explanation
Indices: 23940322--23940355 Score: 50
Period size: 8 Copynumber: 4.6 Consensus size: 7
23940312 TATTTAAGGT
23940322 TTAGGGG
1 TTAGGGG
23940329 TTAGAGGG
1 TTAG-GGG
23940337 TTAGGGG
1 TTAGGGG
23940344 TTTAGGGG
1 -TTAGGGG
23940352 TTAG
1 TTAG
23940356 ACGTGCTAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (7 bp):
TTAGGGG
Found at i:23940342 original size:15 final size:15
Alignment explanation
Indices: 23940322--23940355 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
23940312 TATTTAAGGT
23940322 TTAGGGG-TTAGAGGG
1 TTAGGGGTTTAG-GGG
23940337 TTAGGGGTTTAGGGG
1 TTAGGGGTTTAGGGG
23940352 TTAG
1 TTAG
23940356 ACGTGCTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 14 0.78
16 4 0.22
ACGTcount: A:0.18, C:0.00, G:0.50, T:0.32
Consensus pattern (15 bp):
TTAGGGGTTTAGGGG
Found at i:23940571 original size:15 final size:14
Alignment explanation
Indices: 23940553--23940591 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
23940543 AATATTTTAA
23940553 GATTTAGGGAGTAT
1 GATTTAGGGAGTAT
*
23940567 GGATTTAGGGATTAT
1 -GATTTAGGGAGTAT
*
23940582 GAATTAGGGA
1 GATTTAGGGA
23940592 TCATGGTTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.31, C:0.00, G:0.36, T:0.33
Consensus pattern (14 bp):
GATTTAGGGAGTAT
Found at i:23940590 original size:14 final size:15
Alignment explanation
Indices: 23940556--23940597 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
23940546 ATTTTAAGAT
* *
23940556 TTAGGGAGTATGGAT
1 TTAGGGATTATGGAA
23940571 TTAGGGATTAT-GAA
1 TTAGGGATTATGGAA
*
23940585 TTAGGGATCATGG
1 TTAGGGATTATGG
23940598 TTTAAGGGTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.29, C:0.02, G:0.36, T:0.33
Consensus pattern (15 bp):
TTAGGGATTATGGAA
Found at i:23940645 original size:14 final size:14
Alignment explanation
Indices: 23940620--23940660 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
23940610 GATTTAATGT
*
23940620 TTAAGGGTTAGGGG
1 TTAAGAGTTAGGGG
23940634 TT-AGATGTTAGGGG
1 TTAAGA-GTTAGGGG
23940648 TTAAGAGTTAGGG
1 TTAAGAGTTAGGG
23940661 ATTTAAGGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 2 0.08
14 19 0.79
15 3 0.12
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32
Consensus pattern (14 bp):
TTAAGAGTTAGGGG
Found at i:23941465 original size:106 final size:106
Alignment explanation
Indices: 23941276--23941520 Score: 354
Period size: 106 Copynumber: 2.3 Consensus size: 106
23941266 AAACCAAAAC
* * *
23941276 AGCAAAACGGCGTCACTTTGTTCAAAATGAAATAACGGCGTTTTTAATAAAAACGCCGCAAAAAA
1 AGCAAAACGGCGTCAATTTGTTCAAAATAAAATAACGGCGTTTTTAATAAAAACGACGCAAAAAA
*
23941341 TAAATCAATATATAAAAAAATA-A-AATAAAAGATTTTAGCAA-
66 TAAATCAATATATAAAAAAACAGATAA-AAAA-ATTTTAG-AAT
* *
23941382 AGCAAAACGGCGTCAATTTGTTCAAAATAAAATAGCGGCGTTTTTTTATAAAAACGACGCAAAAA
1 AGCAAAACGGCGTCAATTTGTTCAAAATAAAATAACGGCG-TTTTTAATAAAAACGACGCAAAAA
23941447 ATAAATCAATATAT-AAAAAACAGATAAAAAAATTTTAGAAT
65 ATAAATCAATATATAAAAAAACAGATAAAAAAATTTTAGAAT
*
23941488 AGCAAAACGGCGTCATTTTGTTCAAAATGAAAA
1 AGCAAAACGGCGTCAATTTGTTCAAAAT-AAAA
23941521 AATTTTGCGG
Statistics
Matches: 127, Mismatches: 7, Indels: 9
0.89 0.05 0.06
Matches are distributed among these distances:
105 2 0.02
106 78 0.61
107 45 0.35
108 2 0.02
ACGTcount: A:0.50, C:0.13, G:0.13, T:0.24
Consensus pattern (106 bp):
AGCAAAACGGCGTCAATTTGTTCAAAATAAAATAACGGCGTTTTTAATAAAAACGACGCAAAAAA
TAAATCAATATATAAAAAAACAGATAAAAAAATTTTAGAAT
Found at i:23941796 original size:154 final size:149
Alignment explanation
Indices: 23941412--23941823 Score: 528
Period size: 148 Copynumber: 2.7 Consensus size: 149
23941402 TTCAAAATAA
* * * * *
23941412 AATAGCGGCGTTTTTTTATAAAAACGACGCAAAAAATAAATCAATATAT-AAAAAA-CAGATAAA
1 AATAGCGGCGTTTTTATA-AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAT-AA
* *
23941475 AAAATTTTAGAATAGCAAAACGGCGTCATTTTGTTCAAAATGAAA-AAATTTTGCGGCGTTTTTG
64 AAAATTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAATGAAATAAATTTTGCAGCGTTTTTG
23941539 AGAAAAACACTAAAGGTAAGC
129 AGAAAAACACTAAAGGTAAGC
* * * *
23941560 AATAGTGGCGCTTTTAT-AAAAGCGCCGCAAAAAATAAATCAATTTATAAAAAATTAAAATAAAA
1 AATAGCGGCGTTTTTATAAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAA
* ***
23941624 AATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCCAAATGAAATTTTTTTTGCAGCGTTTTTTT
66 AA-TTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAATGAAATAAATTTTGCAGCG--TTTTT
* * *
23941689 G-GAAAACGCCGCTAAAGGTGAGC
128 GAGAAAA--ACACTAAAGGTAAGC
23941712 AATAGCGGCGTTTTTATAAAAAACGCCGCAAAAAATAAATCAATTTATTAAAAAAATAAAATAAA
1 AATAGCGGCGTTTTTATAAAAAACGCCGCAAAAAATAAATCAATTTA-TAAAAAAATAAAATAAA
* *
23941777 AAATTTTAAGCATAGCAAAACGGCGTCAATTTGTTCAAAATAAAATA
65 AAATTTT-AGCATAGCAAAACGGCGTCATTTTGTTCAAAATGAAATA
23941824 GCTTTAAAAA
Statistics
Matches: 227, Mismatches: 26, Indels: 16
0.84 0.10 0.06
Matches are distributed among these distances:
146 27 0.12
147 11 0.05
148 56 0.25
149 9 0.04
150 5 0.02
151 6 0.03
152 27 0.12
153 32 0.14
154 54 0.24
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.28
Consensus pattern (149 bp):
AATAGCGGCGTTTTTATAAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAATAAAA
AATTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAATGAAATAAATTTTGCAGCGTTTTTGAG
AAAAACACTAAAGGTAAGC
Found at i:23941953 original size:105 final size:106
Alignment explanation
Indices: 23941826--23942241 Score: 423
Period size: 100 Copynumber: 4.0 Consensus size: 106
23941816 ATAAAATAGC
* *
23941826 TTTAAAAACGCCGCAAAAAATAAATCAATATATAAAAAA-T-AGATAAAAAATTTTTAGAATAGC
1 TTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAACTAAAATAAAAAATTTTTAGAATAGC
* *
23941889 AAAACGGCGTCATTTCGTTCAAAATGAAAAAATTTTGCGGCG
66 AAAACGGCATCATTTTGTTCAAAATG-AAAAATTTTGCGGCG
* * * *
23941931 TTTAAAAGCGCCGCAAAAAATAAATCAATTTATAAAAAATTAAAATAAAAAATTTTTAGCATAGA
1 TTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAACTAAAATAAAAAATTTTTAGAATAGC
* *
23941996 AAAACGACATCATTTTGTTCCAAATGAAAAATTTT------
66 AAAACGGCATCATTTTGTTCAAAATGAAAAATTTTGCGGCG
* * * * *
23942031 ATAAAAAACGCCGCAAAAAATAAATCAATTTATTAAAAAA-TAAAATAAAAAATTTTAAGCATAA
1 TTTAAAAACGCCGCAAAAAATAAATCAATTTA-TAAAAAACTAAAATAAAAAATTTTTAGAATAG
* * * *
23942095 CAAAACGGTATCATTTTGTTTAAAGTG--AAA--TAGCGGCGG
65 CAAAACGGCATCATTTTGTTCAAAATGAAAAATTTTGCGGC-G
**
23942134 TTTTAAAAAAAACGCCGC-AAAAATAAATCAATTTATAAAAAAC-AAAATAAAAAA-AATTAGAA
1 -TTT---AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAACTAAAATAAAAAATTTTTAGAA
* * *
23942196 TAGTAAAACGGCGTCATTTTATTCAAAATGAAAAATCATTTGCGGC
62 TAGCAAAACGGCATCATTTTGTTCAAAATGAAAAAT--TTTGCGGC
23942242 ATTTTTATAA
Statistics
Matches: 255, Mismatches: 35, Indels: 37
0.78 0.11 0.11
Matches are distributed among these distances:
96 1 0.00
98 3 0.01
100 72 0.28
101 7 0.03
104 28 0.11
105 55 0.22
106 30 0.12
107 53 0.21
110 6 0.02
ACGTcount: A:0.51, C:0.12, G:0.11, T:0.26
Consensus pattern (106 bp):
TTTAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAACTAAAATAAAAAATTTTTAGAATAGC
AAAACGGCATCATTTTGTTCAAAATGAAAAATTTTGCGGCG
Found at i:23945396 original size:43 final size:43
Alignment explanation
Indices: 23945335--23945419 Score: 125
Period size: 43 Copynumber: 2.0 Consensus size: 43
23945325 CAATGATGTA
* * *
23945335 CAAGATTTTCTTGATTAAGTAAATGTATTATATCTTTTATTAC
1 CAAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTAC
* *
23945378 CAAGATTTACTTGATTAAGAAAATGCATTTTATGTTTTATTA
1 CAAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTA
23945420 TCTTGCATAT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.34, C:0.08, G:0.11, T:0.47
Consensus pattern (43 bp):
CAAGATTTACTTGATTAAGAAAATGCATTATATCTTTTATTAC
Found at i:23945729 original size:43 final size:43
Alignment explanation
Indices: 23945682--23945950 Score: 315
Period size: 43 Copynumber: 6.3 Consensus size: 43
23945672 GATATGTTTT
*
23945682 TAGCGGCGTTTGTGTAAAAAGTGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGTAAAAAGCGCCGCTAAAGGTCTTGATCTA
* *
23945725 TAGCGGCGTTTGTAG-AGAAAGCGCCGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGT-GTAAAAAGCGCCGCTAAAGGTCTTGATCTA
* ** * *
23945768 TAGCGGTGTTTGTGTGGAAAGCGCCGCTAAAGTTATTGATCTA
1 TAGCGGCGTTTGTGTAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
23945811 TAGCGGCGTTTGTGTGAAAAGCGCCGCTAAATGTATTGATTTA
1 TAGCGGCGTTTGTGTAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * * * *
23945854 TTGTGGCATTTGTGGAAAAATCGCCGCTAAAGGTCCTGATCTA
1 TAGCGGCGTTTGTGTAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * * *
23945897 TAGCGGCGTTTGTGGAAAAAGCGCCACAAAAGATCATGATCTA
1 TAGCGGCGTTTGTGTAAAAAGCGCCGCTAAAGGTCTTGATCTA
23945940 TAGCGGCGTTT
1 TAGCGGCGTTT
23945951 ATAGAAATAA
Statistics
Matches: 193, Mismatches: 31, Indels: 4
0.85 0.14 0.02
Matches are distributed among these distances:
42 1 0.01
43 191 0.99
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
TAGCGGCGTTTGTGTAAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:23946369 original size:51 final size:51
Alignment explanation
Indices: 23946309--23946643 Score: 287
Period size: 51 Copynumber: 6.6 Consensus size: 51
23946299 GATGAACACG
* * *
23946309 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTGGTCACA
* * * *
23946360 TGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGTTTTGAG-CACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA-TATTG-GTCACA
* * * * *
23946411 TGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTA-TGGTTACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA-TATTGGTCACA
* * * * * *
23946462 TATGTGGTACTAAGTGAAGGCTACTATG-GATACCGGA-AAGCT-TTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTG-TACC-GATAA-ATATTGGTCACA
* *
23946513 TATGTAGTACTATGTGAAGGCTACTACGTG-AGCCG-TAAA-ACTTGATCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGATAAATA-TTGGTCACA
* * * * *
23946563 TGTGTAGTACTATGTGAAGGCTACTACGTGAACTG-TAAA-ACTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTGGTCACA
*
23946612 TGTGTAGTATTATGTGAAGGCTACTACGTGTA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTA
23946644 TCGAATGATA
Statistics
Matches: 230, Mismatches: 40, Indels: 30
0.77 0.13 0.10
Matches are distributed among these distances:
49 37 0.16
50 52 0.23
51 134 0.58
52 7 0.03
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTGGTCACA
Found at i:23946481 original size:102 final size:101
Alignment explanation
Indices: 23946305--23946646 Score: 401
Period size: 102 Copynumber: 3.4 Consensus size: 101
23946295 TATCGATGAA
* *
23946305 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACT-ATGGTCACATGTGTAGTA
23946369 CTAAGTGAAGGCTACTATGTGTACCGAAAAGTTTTGAG
65 CTAAGTGAAGGCTACTATGTGTACCGAAAAG-TTTGAG
* * * * *
23946407 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTACATATGTGGTAC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
*
23946472 TAAGTGAAGGCTACTATG-GATACCGGAAAGCTTTG-G
66 TAAGTGAAGGCTACTATGTG-TACCGAAAAG-TTTGAG
* * * *
23946508 TCACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACT-TGATCACATGTGTAGT
1 -CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGT-AAACTATGGTCACATGTGTAGT
* * * * * *
23946571 ACTATGTGAAGGCTACTACGTGAACTGTAAAA--CTGAT
64 ACTAAGTGAAGGCTACTATGTGTACCG-AAAAGTTTGAG
*
23946608 CACGTGTGTAGTATTATGTGAAGGCTACTACGTGTATCG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCG
23946647 AATGATAAAA
Statistics
Matches: 205, Mismatches: 27, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
99 34 0.17
100 2 0.01
101 39 0.19
102 129 0.63
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACCGAAAAGTTTGAG
Found at i:23954006 original size:51 final size:51
Alignment explanation
Indices: 23953926--23954264 Score: 302
Period size: 51 Copynumber: 6.7 Consensus size: 51
23953916 TATCGATGAA
* * *
23953926 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTGGT
* * * * * *
23953977 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGAGAAGTTTTGAG-
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTG-GT
* * * * *
23954028 CACGTGCGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTA-TGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAA-TATTGGT
* * * * * *
23954079 TACATATGTGGTACTATGTGAAGGCTACTATG-GATACCGGA-AAGCT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-TACC-GATAA-ATATTGGT
* *
23954130 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCG-TAAA-ACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCGATAAATA-TTGGT
* * * *
23954180 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTG-TAAA-ACTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTGGT
*
23954229 CACGTGTGTGGTACTATGTGAAGGCTACTACGTGTA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA
23954265 TCGAATGATA
Statistics
Matches: 233, Mismatches: 42, Indels: 28
0.77 0.14 0.09
Matches are distributed among these distances:
49 38 0.16
50 50 0.21
51 141 0.61
52 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGATAAATATTGGT
Found at i:23954102 original size:102 final size:102
Alignment explanation
Indices: 23953926--23954267 Score: 378
Period size: 102 Copynumber: 3.4 Consensus size: 102
23953916 TATCGATGAA
*
23953926 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACT-ATGGTCACATGTGTAGTA
* *
23953990 CTAAGTGAAGGCTACTATGTG-TACC-GAGAAGTTTTGAG-
65 CTATGTGAAGGCTACTATG-GATACCGGA-AAGCTTTG-GT
* * * * *
23954028 CACGTGCGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTATGGTTACATATGTGGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
23954093 TATGTGAAGGCTACTATGGATACCGGAAAGCTTTGGT
66 TATGTGAAGGCTACTATGGATACCGGAAAGCTTTGGT
* * * * * *
23954130 CACGTATGTAGTACTATGTGAAGGCTACTACGTG-AGCCGTAAAACT-TGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGT-AAACTATGGTCACATGTGTAGTA
* * * * *
23954193 CTATGTGAAGGCTACTACGTGA-ACTGTAAAAC--TGAT
65 CTATGTGAAGGCTACTATG-GATACCGGAAAGCTTTGGT
* *
23954229 CACGTGTGTGGTACTATGTGAAGGCTACTACGTGTATCG
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCG
23954268 AATGATAAAA
Statistics
Matches: 205, Mismatches: 28, Indels: 16
0.82 0.11 0.06
Matches are distributed among these distances:
99 35 0.17
100 2 0.01
101 43 0.21
102 122 0.60
103 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGGTAAACTATGGTCACATGTGTAGTAC
TATGTGAAGGCTACTATGGATACCGGAAAGCTTTGGT
Found at i:23956413 original size:357 final size:357
Alignment explanation
Indices: 23955758--23956491 Score: 1105
Period size: 357 Copynumber: 2.1 Consensus size: 357
23955748 AACCTCAAGT
* ** * *
23955758 TCCTTTTTAAATCCGTATATGATTTCTTTCAGTCCTGTGTAGTTTTTAATTGACTATGGATGATG
1 TCCTTTTTAAATCTGTATATGATTTCCGTCAGTCCTGTGCAGTTTTTAAGTGACTATGGATGATG
* ** *
23955823 GCAAATTTCTCTTCTATTTCACGTACCAAGTTTGGACCCACTATCTTTTTTTGCTTAATTACATC
66 GCAAATTTCTCCTCTATTTCACGTACCAAGTTTGGACCCACTATCTTTTTTCACTCAATTACATC
*
23955888 CAACAGGTCGGTATCCTACACCTTCTACCATACAAGGCTTCGAATGGAGACATCTTGAGGCTGAC
131 CAACAGGTCGGTATCCTACACCTTCTACCATACAAGGCTTCGAATGGAGACATCTTCAGGCTGAC
*
23955953 GTGGTAACTATTATTATAGGAGAATTCAACCAGAGGGACATACTTCTCCTAGGTTATTCCAAAAT
196 GTGGTAACTATTATTATAGGAGAATTCAACCAGAGGGACATACTTCTCCCAGGTTATTCCAAAAT
* *
23956018 CACTCACAGAGAAACGCATTATATCCTCTAAGACCTGAATAACCTTTTCTGATTGGCCATCAGTA
261 CAATCACACAGAAACGCATTATATCCTCTAAGACCTGAATAACCTTTTCTGATTGGCCATCAGTA
*
23956083 GAGGGTGAAA-TGCAATGCTAAAATTTTATTGG
326 GAGGGTGAAACT-CAATGCTAAAATTTTATCGG
* *
23956115 TCCTTTTTAAATCTATATATGATTTCCGTCGGTCCTGTGCA-TTTTTAAGTGACTATGGATGATG
1 TCCTTTTTAAATCTGTATATGATTTCCGTCAGTCCTGTGCAGTTTTTAAGTGACTATGGATGATG
* *
23956179 GCAACTTTCTCCTCTGTTTCACGTACCAAGTTTGGACCCACTATCTTTCTTTCACTCAATTACAT
66 GCAAATTTCTCCTCTATTTCACGTACCAAGTTTGGACCCACTATCTTT-TTTCACTCAATTACAT
* *
23956244 CCAGCAGG-CAGGTGTCCTACACCTTCTACCATACAAGGCTTCGAATGGAGACATCTTCAGGCTG
130 CCAACAGGTC-GGTATCCTACACCTTCTACCATACAAGGCTTCGAATGGAGACATCTTCAGGCTG
* * * * * *
23956308 ATGTGGTAACTATTATTATAGGAGAATTCAACTAGAGGGACTTTCTTTTCCCAGTTTATTCCAAA
194 ACGTGGTAACTATTATTATAGGAGAATTCAACCAGAGGGACATACTTCTCCCAGGTTATTCCAAA
* * * * *
23956373 ATCAATCATACAGAAACGCATTATATCTTCTAAGACCTGAATAACTTTTTTTGATTGGCCATTAG
259 ATCAATCACACAGAAACGCATTATATCCTCTAAGACCTGAATAACCTTTTCTGATTGGCCATCAG
* * * *
23956438 TCGAGGGTGAAACTCAGTGCTAAATTTTTGTCGG
324 TAGAGGGTGAAACTCAATGCTAAAATTTTATCGG
23956472 TCCTTTTTAAATCTGTATAT
1 TCCTTTTTAAATCTGTATAT
23956492 TATTGAACCA
Statistics
Matches: 338, Mismatches: 36, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
356 68 0.20
357 269 0.80
358 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (357 bp):
TCCTTTTTAAATCTGTATATGATTTCCGTCAGTCCTGTGCAGTTTTTAAGTGACTATGGATGATG
GCAAATTTCTCCTCTATTTCACGTACCAAGTTTGGACCCACTATCTTTTTTCACTCAATTACATC
CAACAGGTCGGTATCCTACACCTTCTACCATACAAGGCTTCGAATGGAGACATCTTCAGGCTGAC
GTGGTAACTATTATTATAGGAGAATTCAACCAGAGGGACATACTTCTCCCAGGTTATTCCAAAAT
CAATCACACAGAAACGCATTATATCCTCTAAGACCTGAATAACCTTTTCTGATTGGCCATCAGTA
GAGGGTGAAACTCAATGCTAAAATTTTATCGG
Found at i:23958349 original size:18 final size:18
Alignment explanation
Indices: 23958328--23958373 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
23958318 TTTATAAGTT
23958328 GTTTAAATTTGATTTTTA
1 GTTTAAATTTGATTTTTA
23958346 GTTTAAATTTGATTTTTA
1 GTTTAAATTTGATTTTTA
*
23958364 GTTTATATTT
1 GTTTAAATTT
23958374 TTTAGGAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.26, C:0.00, G:0.11, T:0.63
Consensus pattern (18 bp):
GTTTAAATTTGATTTTTA
Found at i:23959628 original size:35 final size:35
Alignment explanation
Indices: 23959583--23959719 Score: 166
Period size: 35 Copynumber: 3.9 Consensus size: 35
23959573 TAGCACAGTG
* * * * * *
23959583 GCATGTTTAACATGCGAATCAGAATCAGATTTATG
1 GCATGCTTAACATGCGAATCATAAGCAGAATAATA
* *
23959618 GCATGCTTAACATGCGAATCATAGGCAGAACAATA
1 GCATGCTTAACATGCGAATCATAAGCAGAATAATA
*
23959653 GCATGCTTAACATGTGAATCATAAGCAGAATAATA
1 GCATGCTTAACATGCGAATCATAAGCAGAATAATA
* * *
23959688 ACACGCTTAACATGCGAATCATAATCAGAATA
1 GCATGCTTAACATGCGAATCATAAGCAGAATA
23959720 TTCATAATCA
Statistics
Matches: 87, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 87 1.00
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.25
Consensus pattern (35 bp):
GCATGCTTAACATGCGAATCATAAGCAGAATAATA
Found at i:23967827 original size:18 final size:17
Alignment explanation
Indices: 23967758--23967832 Score: 69
Period size: 18 Copynumber: 4.2 Consensus size: 17
23967748 AAGTCATTCC
*
23967758 AAATTAAAAATTAATATA
1 AAATTAAATATTAATA-A
* *
23967776 AAGATAATAATATCAATAA
1 AA-ATTA-AATATTAATAA
* *
23967795 AAATTTAACATTAATAA
1 AAATTAAATATTAATAA
23967812 AACATTAAATATTAATAA
1 AA-ATTAAATATTAATAA
23967830 AAA
1 AAA
23967833 ACTAAAAGTA
Statistics
Matches: 45, Mismatches: 9, Indels: 7
0.74 0.15 0.11
Matches are distributed among these distances:
17 12 0.27
18 19 0.42
19 6 0.13
20 8 0.18
ACGTcount: A:0.64, C:0.04, G:0.01, T:0.31
Consensus pattern (17 bp):
AAATTAAATATTAATAA
Found at i:23967838 original size:18 final size:18
Alignment explanation
Indices: 23967804--23967838 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23967794 AAAATTTAAC
* *
23967804 ATTAATAAAACATTAAAT
1 ATTAATAAAAAACTAAAT
23967822 ATTAATAAAAAACTAAA
1 ATTAATAAAAAACTAAA
23967839 AGTAGAACCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.29
Consensus pattern (18 bp):
ATTAATAAAAAACTAAAT
Found at i:23968375 original size:18 final size:18
Alignment explanation
Indices: 23968338--23968391 Score: 65
Period size: 19 Copynumber: 2.9 Consensus size: 18
23968328 ATTACAAAAT
* *
23968338 AATTCAAAATAATTTTTAA
1 AATTCTAAAT-ATTTATAA
23968357 AATTCTAAATATTTATAAA
1 AATTCTAAATATTTAT-AA
23968376 AATTCTAAA-ATTTATA
1 AATTCTAAATATTTATA
23968392 TTTTTTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
17 1 0.03
18 11 0.34
19 20 0.62
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.43
Consensus pattern (18 bp):
AATTCTAAATATTTATAA
Found at i:23972275 original size:15 final size:15
Alignment explanation
Indices: 23972255--23972289 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
23972245 TTCTTTTAAC
23972255 GCAAATATCTAGAAT
1 GCAAATATCTAGAAT
*
23972270 GCAAATATCTATAAT
1 GCAAATATCTAGAAT
23972285 GCAAA
1 GCAAA
23972290 GTTTGCAGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (15 bp):
GCAAATATCTAGAAT
Found at i:23980707 original size:27 final size:27
Alignment explanation
Indices: 23980657--23980708 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
23980647 TATATAAAAA
* *
23980657 ATTTAAATTTTATAAAAATGAAAAAGT
1 ATTTAAATTTTAGAAAAATAAAAAAGT
*
23980684 ATTTAAATTTTAGAAAATTAAAAAA
1 ATTTAAATTTTAGAAAAATAAAAAA
23980709 ATTCCATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.37
Consensus pattern (27 bp):
ATTTAAATTTTAGAAAAATAAAAAAGT
Found at i:23981659 original size:330 final size:331
Alignment explanation
Indices: 23981057--23981720 Score: 1312
Period size: 330 Copynumber: 2.0 Consensus size: 331
23981047 GATGTTCTTG
23981057 AAACTTTTTAGATGTTAATGCTTTGGTTTAAAGTTTGATGATGAAATAGAACTATTTTGTAAAGT
1 AAACTTTTTAGATGTTAATGCTTTGGTTTAAAGTTTGATGATGAAATAGAACTATTTTGTAAAGT
23981122 GATTTTTTATTAGTTTTGAGTTTAGGGAATAAAATGATAAAATGTTGAAATTATCTTAAATTTTT
66 GATTTTTTATTAGTTTTGAGTTTAGGGAATAAAATGATAAAATGTTGAAATTATCTTAAATTTTT
*
23981187 TTGTAAGTTTTCGTAATTGAGGATTGTATAGGGATGTTAACAAATTCGGCATGTTAGTCTAGGGC
131 TTGTAAGTTTTCGTAATTGAGGATTGTATAGGGATGTTAACAAATCCGGCATGTTAGTCTAGGGC
23981252 TTAATTGTGAAAAATAAGCTTCTTTTAGTTTTAGGGGCTAAATTGAACAAAGTGCAAAACTTTAA
196 TTAATTGTGAAAAATAAGCTTCTTTTAGTTTTAGGGGCTAAATTGAACAAAGTGCAAAACTTTAA
23981317 GGAAATAGTAAAAAATGTTAATATGAGGTCATGTGCATTAAATTAAATGTTATAGTGTAATTGGA
261 GGAAATAGTAAAAAATGTTAATATGAGGTCATGTGCATTAAATTAAATGTTATAGTGTAATTGGA
23981382 ACGGAT
326 ACGGAT
23981388 AAACTTTTTAGATGTTAATGCTTTGGTTTAAAGTTTGATGATG-AATAGAACTATTTTGTAAAGT
1 AAACTTTTTAGATGTTAATGCTTTGGTTTAAAGTTTGATGATGAAATAGAACTATTTTGTAAAGT
23981452 GATTTTTTATTAGTTTTGAGTTTAGGGAATAAAATGATAAAATGTTGAAATTATCTTAAATTTTT
66 GATTTTTTATTAGTTTTGAGTTTAGGGAATAAAATGATAAAATGTTGAAATTATCTTAAATTTTT
23981517 TTGTAAGTTTTCGTAATTGAGGATTGTATAGGGATGTTAACAAATCCGGCATGTTAGTCTAGGGC
131 TTGTAAGTTTTCGTAATTGAGGATTGTATAGGGATGTTAACAAATCCGGCATGTTAGTCTAGGGC
23981582 TTAATTGTGAAAAATAAGCTTCTTTTAGTTTTAGGGGCTAAATTGAACAAAGTGCAAAACTTTAA
196 TTAATTGTGAAAAATAAGCTTCTTTTAGTTTTAGGGGCTAAATTGAACAAAGTGCAAAACTTTAA
23981647 GGAAATAGTAAAAAATGTTAATATGAGGTCATGTGCATTAAATTAAATGTTATAGTGTAATTGGA
261 GGAAATAGTAAAAAATGTTAATATGAGGTCATGTGCATTAAATTAAATGTTATAGTGTAATTGGA
23981712 ACGGAT
326 ACGGAT
23981718 AAA
1 AAA
23981721 TTGAAATAAA
Statistics
Matches: 332, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
330 289 0.87
331 43 0.13
ACGTcount: A:0.35, C:0.06, G:0.20, T:0.39
Consensus pattern (331 bp):
AAACTTTTTAGATGTTAATGCTTTGGTTTAAAGTTTGATGATGAAATAGAACTATTTTGTAAAGT
GATTTTTTATTAGTTTTGAGTTTAGGGAATAAAATGATAAAATGTTGAAATTATCTTAAATTTTT
TTGTAAGTTTTCGTAATTGAGGATTGTATAGGGATGTTAACAAATCCGGCATGTTAGTCTAGGGC
TTAATTGTGAAAAATAAGCTTCTTTTAGTTTTAGGGGCTAAATTGAACAAAGTGCAAAACTTTAA
GGAAATAGTAAAAAATGTTAATATGAGGTCATGTGCATTAAATTAAATGTTATAGTGTAATTGGA
ACGGAT
Found at i:23992933 original size:23 final size:22
Alignment explanation
Indices: 23992907--23992965 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 22
23992897 ACCTACTTTC
*
23992907 TTACTATAGTATTTTTCGGGGTA
1 TTACTATAGTATTTTT-GGGATA
23992930 TTAC-AGTAGTAATTTTTGGGATA
1 TTACTA-TAGT-ATTTTTGGGATA
23992953 TTACCTATA-TATT
1 TTA-CTATAGTATT
23992966 GATGTAAATC
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
22 4 0.13
23 17 0.55
24 9 0.29
25 1 0.03
ACGTcount: A:0.27, C:0.08, G:0.17, T:0.47
Consensus pattern (22 bp):
TTACTATAGTATTTTTGGGATA
Found at i:23993886 original size:23 final size:23
Alignment explanation
Indices: 23993860--23993925 Score: 65
Period size: 23 Copynumber: 3.2 Consensus size: 23
23993850 TGAAAAACGT
23993860 CGCTATAGGTTGACCATTAGCGG
1 CGCTATAGGTTGACCATTAGCGG
* *
23993883 CGCT-T--TTTGA--A--AGCGC
1 CGCTATAGGTTGACCATTAGCGG
23993899 CGCTATAGGTTGACCATTAGCGG
1 CGCTATAGGTTGACCATTAGCGG
23993922 CGCT
1 CGCT
23993926 TTTTGAAAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 14
0.64 0.08 0.28
Matches are distributed among these distances:
16 8 0.25
17 1 0.03
18 1 0.03
19 4 0.12
20 4 0.12
21 1 0.03
22 1 0.03
23 12 0.38
ACGTcount: A:0.20, C:0.24, G:0.29, T:0.27
Consensus pattern (23 bp):
CGCTATAGGTTGACCATTAGCGG
Found at i:23993914 original size:39 final size:38
Alignment explanation
Indices: 23993794--23993933 Score: 181
Period size: 40 Copynumber: 3.6 Consensus size: 38
23993784 ATAGATCAAG
* * **
23993794 CATTAGCAGCGCTTTCTGGAATACGTCGCTATAGGTCAAC
1 CATTAGCGGCGCTTT-TTGAA-ACGTCGCTATAGGTTGAC
*
23993834 CATTAGCGGTGCTTTTTGAAAAACGTCGCTATAGGTTGAC
1 CATTAGCGGCGCTTTTTG--AAACGTCGCTATAGGTTGAC
*
23993874 CATTAGCGGCGCTTTTTGAAAGCGCCGCTATAGGTTGAC
1 CATTAGCGGCGCTTTTTGAAA-CGTCGCTATAGGTTGAC
23993913 CATTAGCGGCGCTTTTTGAAA
1 CATTAGCGGCGCTTTTTGAAA
23993934 AATACTGCAA
Statistics
Matches: 90, Mismatches: 7, Indels: 7
0.87 0.07 0.07
Matches are distributed among these distances:
38 3 0.03
39 39 0.43
40 46 0.51
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.30
Consensus pattern (38 bp):
CATTAGCGGCGCTTTTTGAAACGTCGCTATAGGTTGAC
Found at i:23994394 original size:14 final size:14
Alignment explanation
Indices: 23994345--23994517 Score: 84
Period size: 14 Copynumber: 12.2 Consensus size: 14
23994335 TTAATTATCA
*
23994345 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
*
23994359 TTATTGTTTAGGGT
1 TTATGGTTTAGGGT
*
23994373 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
* *
23994387 TTAAGGTTTAAGAGTT
1 TTATGGTTT-AG-GGT
*
23994403 ATTAT--TTTAAGGT
1 -TTATGGTTTAGGGT
* *
23994416 TTATGGATTATGGT
1 TTATGGTTTAGGGT
*
23994430 TTATGATTTAAGGG-
1 TTATGGTTT-AGGGT
** *
23994444 TTGGGGTTTAAGGT
1 TTATGGTTTAGGGT
* * *
23994458 TTAGGGGTTACGAGT
1 TTATGGTTTA-GGGT
* *
23994473 TAAAGG-TTAGGGGT
1 TTATGGTTTA-GGGT
* *
23994487 TTATGGTTTATGTT
1 TTATGGTTTAGGGT
*
23994501 TTATGATTTAGGGT
1 TTATGGTTTAGGGT
23994515 TTA
1 TTA
23994518 AAGGATAGGG
Statistics
Matches: 117, Mismatches: 33, Indels: 18
0.70 0.20 0.11
Matches are distributed among these distances:
12 4 0.03
13 5 0.04
14 86 0.74
15 17 0.15
16 2 0.02
17 3 0.03
ACGTcount: A:0.23, C:0.01, G:0.30, T:0.47
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:23994460 original size:21 final size:21
Alignment explanation
Indices: 23994380--23994546 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 21
23994370 GGTATATGGT
*
23994380 TTAGGGTTTAAGGTTTAAGAG
1 TTAGGGTTTAAGGTTTAAGGG
*** * *
23994401 TTATTATTTTAAGGTTTATGGA
1 TTA-GGGTTTAAGGTTTAAGGG
* * *
23994423 TTATGGTTTATGATTTAAGGG
1 TTAGGGTTTAAGGTTTAAGGG
* *
23994444 TTGGGGTTTAAGGTTTAGGGG
1 TTAGGGTTTAAGGTTTAAGGG
* * *
23994465 TTACGAGTTAAAGG-TTAGGGG
1 TTA-GGGTTTAAGGTTTAAGGG
* * * * **
23994486 TTTATGGTTTATGTTTTATGAT
1 -TTAGGGTTTAAGGTTTAAGGG
* *
23994508 TTAGGGTTTAAAGG-ATAGGGG
1 TTAGGGTTT-AAGGTTTAAGGG
23994529 TTAAGGGTTTAAGGTTTA
1 TT-AGGGTTTAAGGTTTA
23994547 GATTAATTAG
Statistics
Matches: 103, Mismatches: 36, Indels: 13
0.68 0.24 0.09
Matches are distributed among these distances:
21 62 0.60
22 41 0.40
ACGTcount: A:0.25, C:0.01, G:0.32, T:0.43
Consensus pattern (21 bp):
TTAGGGTTTAAGGTTTAAGGG
Found at i:23994515 original size:64 final size:64
Alignment explanation
Indices: 23994350--23994547 Score: 175
Period size: 64 Copynumber: 3.1 Consensus size: 64
23994340 TATCATTATA
* * * * * * ** * *
23994350 GTTTAGGGTTTATTGTTTAGGGTATATGGTTTAGGGTTTAAGGTTTAAGAGTTATTATTTTAAG
1 GTTTAGGGTTTATGGTTTATGATTTATGGTTTAGGGTTTAAGGTTTAGGGGTTACGAGTTAAAG
* * * * *
23994414 GTTTATGGATTATGGTTTATGATTTAAGGGTTGGGGTTTAAGGTTTAGGGGTTACGAGTTAAAG
1 GTTTAGGGTTTATGGTTTATGATTTATGGTTTAGGGTTTAAGGTTTAGGGGTTACGAGTTAAAG
* * * * * *
23994478 G-TTAGGGGTTTATGGTTTATGTTTTATGATTTAGGGTTTAAAGG-ATAGGGGTTAAGGGTTTAA
1 GTTTA-GGGTTTATGGTTTATGATTTATGGTTTAGGGTTT-AAGGTTTAGGGGTTACGAGTTAAA
23994541 G
64 G
23994542 GTTTAG
1 GTTTAG
23994548 ATTAATTAGT
Statistics
Matches: 105, Mismatches: 26, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
63 3 0.03
64 95 0.90
65 7 0.07
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.44
Consensus pattern (64 bp):
GTTTAGGGTTTATGGTTTATGATTTATGGTTTAGGGTTTAAGGTTTAGGGGTTACGAGTTAAAG
Found at i:24001764 original size:119 final size:119
Alignment explanation
Indices: 24001627--24002605 Score: 1814
Period size: 119 Copynumber: 8.2 Consensus size: 119
24001617 TTTTCAAGTT
*
24001627 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
24001692 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
*
24001746 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
24001811 TAATATAAGAACATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
*
24001865 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
24001930 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
*
24001984 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
24002049 TAATATAAGAACATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
24002103 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
24002168 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
24002223 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
24002288 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
24002343 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
24002408 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTT-TTTAAATTATATAGTTTAATTAAA
24002463 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
24002528 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
66 TAATATAAGAATATTAATTATTAAGAATTTT-TTAAATTATATAGTTTAATTAAA
24002583 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
24002606 TAAATATGAT
Statistics
Matches: 846, Mismatches: 10, Indels: 7
0.98 0.01 0.01
Matches are distributed among these distances:
119 447 0.53
120 399 0.47
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.48
Consensus pattern (119 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAA
Found at i:24002342 original size:18 final size:17
Alignment explanation
Indices: 24002314--24002348 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24002304 ATTATTAAGA
*
24002314 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24002331 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24002349 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24002582 original size:18 final size:17
Alignment explanation
Indices: 24002554--24002588 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24002544 ATTATTAAGA
*
24002554 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24002571 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24002589 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24002845 original size:16 final size:16
Alignment explanation
Indices: 24002824--24002875 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
24002814 GATTAGCTAT
24002824 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
24002840 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
*
24002856 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
24002872 TACA
1 TACA
24002876 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.37, C:0.35, G:0.02, T:0.27
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:24005890 original size:43 final size:43
Alignment explanation
Indices: 24005829--24005968 Score: 190
Period size: 43 Copynumber: 3.3 Consensus size: 43
24005819 ACGGTACTTT
* *
24005829 TAGCGGTGTTTGTCATAAAAGCGCCGCTAAAGGTCATGCTCTA
1 TAGCGGCGTTTGTCATAAAAGCGCCGCTAAAGGTCATGTTCTA
* *
24005872 TAGCGGCGTTTGTCATAAAAGCGCTGCTAAAGGTCATGTTCTT
1 TAGCGGCGTTTGTCATAAAAGCGCCGCTAAAGGTCATGTTCTA
* * * * * *
24005915 TAGCGGCATTTTTTATAAAAGCGTCGCTAAAGCTCATGTTTTA
1 TAGCGGCGTTTGTCATAAAAGCGCCGCTAAAGGTCATGTTCTA
24005958 TAGCGGCGTTT
1 TAGCGGCGTTT
24005969 TTCACATAAA
Statistics
Matches: 84, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (43 bp):
TAGCGGCGTTTGTCATAAAAGCGCCGCTAAAGGTCATGTTCTA
Found at i:24009990 original size:48 final size:48
Alignment explanation
Indices: 24009911--24010004 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
24009901 AGGGAATTCT
* *
24009911 GTTGAATCCTTTATTGTTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
1 GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
24009959 GTTGAATCCATTATTGGTG-GAAGTT-AGGCTGACTTAGGCGTTTTTA
1 GTTGAATCCATTATTGGTGCG-AGTTGA-GCTGACTTAGGCGTTTTTA
24010005 AGCCAAGAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 2 0.05
48 40 0.95
ACGTcount: A:0.19, C:0.13, G:0.28, T:0.40
Consensus pattern (48 bp):
GTTGAATCCATTATTGGTGCGAGTTGAGCTGACTTAGGCGTTTTTACG
Found at i:24010659 original size:96 final size:97
Alignment explanation
Indices: 24010388--24010706 Score: 387
Period size: 96 Copynumber: 3.3 Consensus size: 97
24010378 ATATGTGAGC
** * * * *
24010388 TCTTTGCAAAGAATATGTGAACTGTCAATGTATTATATGCGTGAATTATCTCTA-CAAAGTATGT
1 TCTTTGCAAAGAATATGCAAACTGTCAATGTATTGTATGTGTGAACTGTCTCTAGCAAAGTATGT
*
24010452 ACGAACTGTCATTGTATTGTATGCATGAGT-TG
66 GCGAACTGTCATTGTATTGTATGCATGA-TCTG
*** * *
24010484 TCTTTATGAAGAATATACAAACT-TCAATGTATTGTATGTGTGAACCGTCTCT-GCAAAGTATGT
1 TCTTTGCAAAGAATATGCAAACTGTCAATGTATTGTATGTGTGAACTGTCTCTAGCAAAGTATGT
* *
24010547 GCGAATTGTCATTGTATTGTATGCATGATCTA
66 GCGAACTGTCATTGTATTGTATGCATGATCTG
* * * *
24010579 TCTTTGCAAAGAATATGCAAATTGTCAATGTATTGTATATGTCAACTGTCT-TAGCGAAGTATGT
1 TCTTTGCAAAGAATATGCAAACTGTCAATGTATTGTATGTGTGAACTGTCTCTAGCAAAGTATGT
* *
24010643 GCGAACTGTCACTGTATTGTATGCATGAACTG
66 GCGAACTGTCATTGTATTGTATGCATGATCTG
* * *
24010675 TCTTTGCACAGAATATGCAAATTGTCATTGTA
1 TCTTTGCAAAGAATATGCAAACTGTCAATGTA
24010707 AAGTATGAGT
Statistics
Matches: 190, Mismatches: 29, Indels: 8
0.84 0.13 0.04
Matches are distributed among these distances:
94 1 0.01
95 80 0.42
96 109 0.57
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (97 bp):
TCTTTGCAAAGAATATGCAAACTGTCAATGTATTGTATGTGTGAACTGTCTCTAGCAAAGTATGT
GCGAACTGTCATTGTATTGTATGCATGATCTG
Found at i:24010678 original size:48 final size:48
Alignment explanation
Indices: 24010388--24010678 Score: 209
Period size: 48 Copynumber: 6.1 Consensus size: 48
24010378 ATATGTGAGC
* * * * * * * *
24010388 TCTTTGCAAAGAATATGTGAACTGTCAATGTATTATATGCGTGAATTA
1 TCTTAGCAAAGTATGTGCGAACTGTCAATGTATTGTATGCATGAACTG
* * **
24010436 TCTCTA-CAAAGTATGTACGAACTGTCATTGTATTGTATGCATGAGTTG
1 TCT-TAGCAAAGTATGTGCGAACTGTCAATGTATTGTATGCATGAACTG
* * * * ** *
24010484 TCTTTATG--AAGAATATACAAACT-TCAATGTATTGTATGTGTGAACCG
1 TC-TTA-GCAAAGTATGTGCGAACTGTCAATGTATTGTATGCATGAACTG
* * * *
24010531 TCTCT-GCAAAGTATGTGCGAATTGTCATTGTATTGTATGCATGATCTA
1 TCT-TAGCAAAGTATGTGCGAACTGTCAATGTATTGTATGCATGAACTG
* * * * *
24010579 TCTTTGCAAAGAATATGCAAATTGTCAATGTATTGTAT--ATGTCAACTG
1 TCTTAGCAAAGTATGTGCGAACTGTCAATGTATTGTATGCATG--AACTG
* *
24010627 TCTTAGCGAAGTATGTGCGAACTGTCACTGTATTGTATGCATGAACTG
1 TCTTAGCAAAGTATGTGCGAACTGTCAATGTATTGTATGCATGAACTG
24010675 TCTT
1 TCTT
24010679 TGCACAGAAT
Statistics
Matches: 187, Mismatches: 43, Indels: 26
0.73 0.17 0.10
Matches are distributed among these distances:
45 1 0.01
46 4 0.02
47 32 0.17
48 145 0.78
49 2 0.01
50 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.37
Consensus pattern (48 bp):
TCTTAGCAAAGTATGTGCGAACTGTCAATGTATTGTATGCATGAACTG
Found at i:24010713 original size:48 final size:47
Alignment explanation
Indices: 24010458--24010706 Score: 209
Period size: 48 Copynumber: 5.2 Consensus size: 47
24010448 ATGTACGAAC
** * *
24010458 TGTCATTGTATTGTATGCATGAGTTGTCTTTATG-AAGAATATACAAAC
1 TGTCATTGTATTGTATGCATGAACTGTC-TT-TGCAAGAATATGCAAAT
* ** * * * * *
24010506 T-TCAATGTATTGTATGTGTGAACCGTCTCTGCAAAGTATGTGCGAAT
1 TGTCATTGTATTGTATGCATGAACTGTCTTTGC-AAGAATATGCAAAT
* *
24010553 TGTCATTGTATTGTATGCATGATCTATCTTTGCAAAGAATATGCAAAT
1 TGTCATTGTATTGTATGCATGAACTGTCTTTGC-AAGAATATGCAAAT
* * * * * *
24010601 TGTCAATGTATTGTAT--ATGTCAACTGTCTTAGCGAAGTATGTGCGAAC
1 TGTCATTGTATTGTATGCATG--AACTGTCTTTGC-AAGAATATGCAAAT
*
24010649 TGTCACTGTATTGTATGCATGAACTGTCTTTGCACAGAATATGCAAAT
1 TGTCATTGTATTGTATGCATGAACTGTCTTTGCA-AGAATATGCAAAT
24010697 TGTCATTGTA
1 TGTCATTGTA
24010707 AAGTATGAGT
Statistics
Matches: 155, Mismatches: 38, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
45 2 0.01
46 4 0.03
47 31 0.20
48 115 0.74
50 3 0.02
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.38
Consensus pattern (47 bp):
TGTCATTGTATTGTATGCATGAACTGTCTTTGCAAGAATATGCAAAT
Found at i:24014256 original size:37 final size:37
Alignment explanation
Indices: 24014206--24014281 Score: 109
Period size: 37 Copynumber: 2.1 Consensus size: 37
24014196 TTATTACGAA
* *
24014206 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
24014243 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
24014280 GT
1 GT
24014282 TTTTAGAGCT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
37 33 0.94
38 2 0.06
ACGTcount: A:0.26, C:0.30, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:24014481 original size:47 final size:47
Alignment explanation
Indices: 24014403--24015371 Score: 1511
Period size: 47 Copynumber: 20.4 Consensus size: 47
24014393 CCCTTCGGGA
* * * * * * * *
24014403 CTTATCACATTTATGCACTTTCACGTCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24014450 CTTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGTC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24014497 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG--------C
* *
24014552 ATACTTATCACATATATACATTTTCACATTCATCACATCGGCTATTAGGC
1 ---CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24014602 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24014649 CTTATCAC--ACATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24014694 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24014743 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24014790 CTTATCACATATATACACTTTCACATTCATCATATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24014837 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
24014886 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24014933 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24014980 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24015027 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24015074 CTTATCACATTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACA--TATATACACTTTCACATTCATCACATCGGCCATTAGGC
24015123 CTTATCACATATATACACTTTCACA-T--T--CATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
24015165 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24015212 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24015259 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24015306 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
24015353 CTTATCACATATATACACT
1 CTTATCACATATATACACT
24015372 GTCTTGGCTG
Statistics
Matches: 863, Mismatches: 35, Indels: 48
0.91 0.04 0.05
Matches are distributed among these distances:
42 40 0.05
43 1 0.00
44 1 0.00
45 43 0.05
46 1 0.00
47 597 0.69
49 134 0.16
50 1 0.00
55 1 0.00
58 44 0.05
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:24021999 original size:57 final size:59
Alignment explanation
Indices: 24021935--24022050 Score: 146
Period size: 60 Copynumber: 2.0 Consensus size: 59
24021925 TCACTTTAAT
* * * * *
24021935 ATTAAATTAATATAATACTTA-T-CAAGATAAATATTAGATTAAATTTAATATTAAATC
1 ATTAAATTAATAAAATACTTACTACAAAATAAACATTAAAATAAATTTAATATTAAATC
* *
24021992 ATTAAATTAATAAAATATTTATCTACAAAATAAGCATTAAAATAAATTTAATATTAAAT
1 ATTAAATTAATAAAATACTTA-CTACAAAATAAACATTAAAATAAATTTAATATTAAAT
24022051 TTATTAAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
57 19 0.39
59 1 0.02
60 29 0.59
ACGTcount: A:0.53, C:0.05, G:0.03, T:0.39
Consensus pattern (59 bp):
ATTAAATTAATAAAATACTTACTACAAAATAAACATTAAAATAAATTTAATATTAAATC
Found at i:24026530 original size:19 final size:19
Alignment explanation
Indices: 24026506--24026616 Score: 177
Period size: 19 Copynumber: 5.8 Consensus size: 19
24026496 AATCTTCAAG
24026506 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24026525 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
24026544 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24026563 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
24026582 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24026601 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
24026617 AGATATGATT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.40, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24026556 original size:38 final size:38
Alignment explanation
Indices: 24026513--24026616 Score: 199
Period size: 38 Copynumber: 2.7 Consensus size: 38
24026503 AAGGATATGC
24026513 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
*
24026551 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
24026589 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
24026617 AGATATGATT
Statistics
Matches: 65, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
38 65 1.00
ACGTcount: A:0.40, C:0.09, G:0.12, T:0.38
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATAATATAT
Found at i:24026642 original size:22 final size:21
Alignment explanation
Indices: 24026506--24026642 Score: 114
Period size: 19 Copynumber: 6.9 Consensus size: 21
24026496 AATCTTCAAG
*
24026506 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
24026525 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
* *
24026544 AATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
24026563 GATATGCAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
24026582 GATATATAATCTT--AGATAT
1 GATATGTAATCTTAGAGATAT
*
24026601 GATATGCAATCTTAGAAGATAT
1 GATATGTAATCTTAG-AGATAT
*
24026623 GATTTTGTAATCTTAGAGAT
1 GA-TATGTAATCTTAGAGAT
24026643 TAATTTGTAG
Statistics
Matches: 102, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
19 79 0.77
22 12 0.12
23 11 0.11
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.39
Consensus pattern (21 bp):
GATATGTAATCTTAGAGATAT
Found at i:24037365 original size:14 final size:14
Alignment explanation
Indices: 24037348--24037378 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
24037338 TTAGATTTTA
24037348 TTTTTTTCTAGAAT
1 TTTTTTTCTAGAAT
24037362 TTTTTTTCTAGAAT
1 TTTTTTTCTAGAAT
24037376 TTT
1 TTT
24037379 CTATTTGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.06, T:0.68
Consensus pattern (14 bp):
TTTTTTTCTAGAAT
Found at i:24038443 original size:6 final size:6
Alignment explanation
Indices: 24038432--24038465 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
24038422 CACTGATATT
*
24038432 CCCTTC CCCTTC CTCTTC CCCTTC CCCTTC CCCT
1 CCCTTC CCCTTC CCCTTC CCCTTC CCCTTC CCCT
24038466 ATCCTTGACA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (6 bp):
CCCTTC
Found at i:24038451 original size:12 final size:12
Alignment explanation
Indices: 24038430--24038470 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
24038420 GACACTGATA
24038430 TTCC-CTTCCCC
1 TTCCTCTTCCCC
24038441 TTCCTCTTCCCC
1 TTCCTCTTCCCC
*
24038453 TTCCCCTTCCCC
1 TTCCTCTTCCCC
24038465 TATCCT
1 T-TCCT
24038471 TGACACCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
11 4 0.15
12 19 0.73
13 3 0.12
ACGTcount: A:0.02, C:0.59, G:0.00, T:0.39
Consensus pattern (12 bp):
TTCCTCTTCCCC
Found at i:24041043 original size:22 final size:24
Alignment explanation
Indices: 24040993--24041043 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
24040983 TTGCAATGCT
24040993 TTTATATTTTAATAATTGAGTATTA
1 TTTATATTTTAAT-ATTGAGTATTA
24041018 -TTATATATTTAAT-TTGA-T-TTA
1 TTTATAT-TTTAATATTGAGTATTA
24041039 TTTAT
1 TTTAT
24041044 TTATAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
21 3 0.12
22 5 0.21
23 4 0.17
24 6 0.25
25 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (24 bp):
TTTATATTTTAATATTGAGTATTA
Found at i:24041218 original size:14 final size:15
Alignment explanation
Indices: 24041196--24041272 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
24041186 CAATCAAACA
24041196 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
24041210 CCAGCAAATCATTTT
1 CCAGAAAATCATTTT
*
24041225 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
24041245 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
24041259 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
24041273 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.17, G:0.09, T:0.31
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:24041257 original size:34 final size:35
Alignment explanation
Indices: 24041200--24041266 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
24041190 CAAACACCAG
*
24041200 AAAATATTTTCCAGCAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGCAAATCATTTTACAGAAAAGT
*
24041235 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGCAAATCATTTTACAGAAAA
24041267 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.30
Consensus pattern (35 bp):
AAAACATTTTCCAGCAAATCATTTTACAGAAAAGT
Found at i:24041273 original size:14 final size:14
Alignment explanation
Indices: 24041235--24041274 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
24041225 ACAGAAAAGT
*
24041235 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
24041249 AAATCATTTTACGG
1 AAAACATTTTACAG
24041263 AAAACATTTTAC
1 AAAACATTTTAC
24041275 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:24045226 original size:21 final size:21
Alignment explanation
Indices: 24045190--24045232 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
24045180 TTCGGGTGGA
* *
24045190 TTAGCTCTTATGAGCTTCTGT
1 TTAGCTCTTATAAGCTTATGT
*
24045211 TTAGCTCTTTTAAGCTTATGT
1 TTAGCTCTTATAAGCTTATGT
24045232 T
1 T
24045233 GGTGTGTTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.16, C:0.16, G:0.16, T:0.51
Consensus pattern (21 bp):
TTAGCTCTTATAAGCTTATGT
Found at i:24051481 original size:16 final size:16
Alignment explanation
Indices: 24051460--24051495 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
24051450 TCGAGCTCTG
*
24051460 TGCCTAGCAGGCTTTA
1 TGCCTAGCAGGCTTCA
*
24051476 TGCCTAGTAGGCTTCA
1 TGCCTAGCAGGCTTCA
24051492 TGCC
1 TGCC
24051496 GGTGTACCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.17, C:0.28, G:0.25, T:0.31
Consensus pattern (16 bp):
TGCCTAGCAGGCTTCA
Found at i:24051584 original size:41 final size:41
Alignment explanation
Indices: 24051467--24051584 Score: 146
Period size: 41 Copynumber: 2.9 Consensus size: 41
24051457 CTGTGCCTAG
* *
24051467 CAGGCTTTATGCCTAGTAGGCTTCATGCCGGTGTACCATAT
1 CAGGCTTTATGCCTAGAAGGCTTCATGCCGGTGTATCATAT
* * *
24051508 CAGGCTTTATGCCTAGCAGGCTTCGTGTCGGTGTATCATAT
1 CAGGCTTTATGCCTAGAAGGCTTCATGCCGGTGTATCATAT
* * * * *
24051549 CTGGCTTTGTGCCTAGAAGGTTTTATACCGGTGTAT
1 CAGGCTTTATGCCTAGAAGGCTTCATGCCGGTGTAT
24051585 TTTAATAAGC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 65 1.00
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.35
Consensus pattern (41 bp):
CAGGCTTTATGCCTAGAAGGCTTCATGCCGGTGTATCATAT
Found at i:24055056 original size:16 final size:16
Alignment explanation
Indices: 24055035--24055074 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
24055025 AGATCTCTGA
*
24055035 CAAGCTTCCAATCGAT
1 CAAGCTTCCAATCAAT
24055051 CAAGCTTCCAATCAAT
1 CAAGCTTCCAATCAAT
24055067 CAAGCTTC
1 CAAGCTTC
24055075 TTATAATCTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.33, C:0.33, G:0.10, T:0.25
Consensus pattern (16 bp):
CAAGCTTCCAATCAAT
Found at i:24058559 original size:118 final size:120
Alignment explanation
Indices: 24058381--24058610 Score: 401
Period size: 118 Copynumber: 1.9 Consensus size: 120
24058371 ATAAGTATTG
*
24058381 TAGTATTATATATTATTATTTTAGTAAATTCATATAAAAATATTTAATATTAAGAATTTTATTAA
1 TAGTATTATATATTATGATTTTAGTAAATTCA-ATAAAAATATTTAATATTAAGAATTTTATTAA
*
24058446 ATTATGTATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTA
65 ATTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTA
* *
24058502 TAGTATTATATATTATGATTTTAGTAAATTC-AT-AGAATATTTAATATTAATAATTTTATTAAA
1 TAGTATTATATATTATGATTTTAGTAAATTCAATAAAAATATTTAATATTAAGAATTTTATTAAA
24058565 TTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAAT
66 TTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAAT
24058611 ATGATTAAAT
Statistics
Matches: 105, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
118 73 0.70
119 2 0.02
121 30 0.29
ACGTcount: A:0.43, C:0.01, G:0.04, T:0.52
Consensus pattern (120 bp):
TAGTATTATATATTATGATTTTAGTAAATTCAATAAAAATATTTAATATTAAGAATTTTATTAAA
TTATATATTTTTATTAAATTATATTTAATAATAATTATGTTAAAATTATATTTTA
Found at i:24058576 original size:18 final size:18
Alignment explanation
Indices: 24058542--24058588 Score: 69
Period size: 18 Copynumber: 2.6 Consensus size: 18
24058532 CATAGAATAT
24058542 TTAATATTA-ATAATTTTA
1 TTAA-ATTATATAATTTTA
*
24058560 TTAAATTATATATTTTTA
1 TTAAATTATATAATTTTA
24058578 TTAAATTATAT
1 TTAAATTATAT
24058589 TTAATAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 23 0.85
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTAAATTATATAATTTTA
Found at i:24058652 original size:44 final size:40
Alignment explanation
Indices: 24058539--24058655 Score: 101
Period size: 41 Copynumber: 2.7 Consensus size: 40
24058529 ATTCATAGAA
* *
24058539 TATTTAATATTAATAATTTTATT-AAATTATATATTTTTAT
1 TATTT-ATATTAATAATATTATTAAAATTATAAATTTTTAT
*
24058579 TAAATTATATTTAATAATAATTATGTTAAAATATGATTAAATTATTTAT
1 T-ATTTATA-TTAATAAT-ATTA--TTAAAAT-T-A-TAAATT-TTTAT
*
24058628 TATTTATATTAATAATCTTATTAAAATT
1 TATTTATATTAATAATATTATTAAAATT
24058656 TAATAACAAT
Statistics
Matches: 62, Mismatches: 5, Indels: 17
0.74 0.06 0.20
Matches are distributed among these distances:
40 4 0.06
41 11 0.18
42 3 0.05
43 1 0.02
44 9 0.15
45 4 0.06
46 4 0.06
47 9 0.15
48 11 0.18
49 6 0.10
ACGTcount: A:0.44, C:0.01, G:0.02, T:0.54
Consensus pattern (40 bp):
TATTTATATTAATAATATTATTAAAATTATAAATTTTTAT
Found at i:24060905 original size:5 final size:5
Alignment explanation
Indices: 24060895--24060933 Score: 51
Period size: 5 Copynumber: 7.4 Consensus size: 5
24060885 TTGGAAAAAT
*
24060895 AATAA AATAAA AATGA AATAA TAATAA AATAA AATAA AA
1 AATAA AAT-AA AATAA AATAA -AATAA AATAA AATAA AA
24060934 GCATAAAAGG
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 20 0.67
6 10 0.33
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (5 bp):
AATAA
Found at i:24060915 original size:11 final size:11
Alignment explanation
Indices: 24060895--24060933 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
24060885 TTGGAAAAAT
24060895 AATAAAATAAA
1 AATAAAATAAA
* *
24060906 AATGAAATAAT
1 AATAAAATAAA
24060917 AATAAAAT-AA
1 AATAAAATAAA
24060927 AATAAAA
1 AATAAAA
24060934 GCATAAAAGG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
10 8 0.33
11 16 0.67
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (11 bp):
AATAAAATAAA
Found at i:24060920 original size:22 final size:21
Alignment explanation
Indices: 24060888--24060928 Score: 73
Period size: 22 Copynumber: 1.9 Consensus size: 21
24060878 GTAGGTCTTG
24060888 GAAAAATAATAAAATAAAAAT
1 GAAAAATAATAAAATAAAAAT
24060909 GAAATAATAATAAAATAAAA
1 GAAA-AATAATAAAATAAAA
24060929 TAAAAGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 4 0.21
22 15 0.79
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.20
Consensus pattern (21 bp):
GAAAAATAATAAAATAAAAAT
Found at i:24060923 original size:16 final size:16
Alignment explanation
Indices: 24060895--24060933 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
24060885 TTGGAAAAAT
*
24060895 AATAAAATAAAAATGA
1 AATAAAATAAAAATAA
24060911 AATAATAAT-AAAATAA
1 AATAA-AATAAAAATAA
24060927 AATAAAA
1 AATAAAA
24060934 GCATAAAAGG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 2 0.10
16 16 0.76
17 3 0.14
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.21
Consensus pattern (16 bp):
AATAAAATAAAAATAA
Found at i:24061271 original size:11 final size:12
Alignment explanation
Indices: 24061249--24061291 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 12
24061239 AACTAATCCT
24061249 CTCTCAAATTTC
1 CTCTCAAATTTC
24061261 CTCTC-AATTTC
1 CTCTCAAATTTC
24061272 CT-TCCAAATTT-
1 CTCT-CAAATTTC
24061283 CTCTCAAAT
1 CTCTCAAAT
24061292 CCATATTTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 1 0.04
11 16 0.57
12 11 0.39
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.42
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:24061383 original size:11 final size:12
Alignment explanation
Indices: 24061346--24061390 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
24061336 CTTAACTCCC
24061346 TTTTTTTAAATA
1 TTTTTTTAAATA
* **
24061358 ATTTTAAAAATA
1 TTTTTTTAAATA
24061370 TTTTTTTAAA-A
1 TTTTTTTAAATA
24061381 TTTTTTTAAA
1 TTTTTTTAAA
24061391 CCGTAAAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTTTAAATA
Found at i:24063141 original size:18 final size:18
Alignment explanation
Indices: 24063114--24063153 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
24063104 CAGGTGTATT
* *
24063114 TCCTAGCCCTAATGTGTA
1 TCCTAACCCTAATATGTA
*
24063132 TCCTAACCCTTATATGTA
1 TCCTAACCCTAATATGTA
24063150 TCCT
1 TCCT
24063154 TTTCTGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.23, C:0.30, G:0.10, T:0.38
Consensus pattern (18 bp):
TCCTAACCCTAATATGTA
Found at i:24063657 original size:25 final size:25
Alignment explanation
Indices: 24063623--24063680 Score: 98
Period size: 25 Copynumber: 2.3 Consensus size: 25
24063613 TATTTTGATA
*
24063623 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAAT
24063648 TTATTTGATGTAATAAAATAGAAAT
1 TTATTTGATGTAATAAAATAGAAAT
*
24063673 TTTTTTGA
1 TTATTTGA
24063681 GTTATTTTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.45
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAAT
Found at i:24063659 original size:69 final size:70
Alignment explanation
Indices: 24063579--24063708 Score: 226
Period size: 70 Copynumber: 1.9 Consensus size: 70
24063569 TAAATTGATA
* *
24063579 TTATTTTATGTAATAAAATA-AAAATTTTTTGAGTTATTTTGATATTATTTGATGTAATAAAATA
1 TTATTTGATGTAATAAAATAGAAAATTTTTTGAGTTATTTTGATATTATTCGATGTAATAAAATA
24063643 GAAGT
66 GAAGT
*
24063648 TTATTTGATGTAATAAAATAGAAATTTTTTTGAGTTATTTTGATATTATTCGATGTAATAA
1 TTATTTGATGTAATAAAATAGAAAATTTTTTGAGTTATTTTGATATTATTCGATGTAATAA
24063709 CATGAGCTTA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
69 19 0.33
70 38 0.67
ACGTcount: A:0.38, C:0.01, G:0.12, T:0.48
Consensus pattern (70 bp):
TTATTTGATGTAATAAAATAGAAAATTTTTTGAGTTATTTTGATATTATTCGATGTAATAAAATA
GAAGT
Found at i:24066321 original size:19 final size:19
Alignment explanation
Indices: 24066297--24066334 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
24066287 ACTAAAGATC
*
24066297 GAGCATTAGCGGCGTTTTT
1 GAGCATTAGCGGCATTTTT
*
24066316 GAGCATTCGCGGCATTTTT
1 GAGCATTAGCGGCATTTTT
24066335 CAGAAAAACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.37
Consensus pattern (19 bp):
GAGCATTAGCGGCATTTTT
Found at i:24066455 original size:41 final size:41
Alignment explanation
Indices: 24066386--24066469 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
24066376 TTCTTACCTT
* *
24066386 TCGGGGCTTTAGCGGCATTTTCAAAAAAACGCTGCTAATGC
1 TCGGGGATTTAGCGGCATTTTCAAAAAAACGCCGCTAATGC
* ***
24066427 TCGGGGATTTAGCGGCGTTTTTTCAAAAACGCCGCTAATGC
1 TCGGGGATTTAGCGGCATTTTCAAAAAAACGCCGCTAATGC
24066468 TC
1 TC
24066470 AGCGACATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (41 bp):
TCGGGGATTTAGCGGCATTTTCAAAAAAACGCCGCTAATGC
Found at i:24066534 original size:41 final size:41
Alignment explanation
Indices: 24066477--24066619 Score: 191
Period size: 41 Copynumber: 3.5 Consensus size: 41
24066467 CTCAGCGACA
* *
24066477 TTTTTGAAAAAGCGCCGCTAATACTCGGTGTTTTAGTGGCG
1 TTTTTTAAAAAGCGCCGCTAATGCTCGGTGTTTTAGTGGCG
* *
24066518 TTTTTTAAAAGGCGCCGCTAATGCTCGGTGTTTTAGTGGTG
1 TTTTTTAAAAAGCGCCGCTAATGCTCGGTGTTTTAGTGGCG
* * *
24066559 TTTTTT-AAAAGTCGCCG-TTATGCTCGGGGTTTTAGCGGCG
1 TTTTTTAAAAAG-CGCCGCTAATGCTCGGTGTTTTAGTGGCG
*
24066599 TTTTTAAAAAAGCGCCGCTAA
1 TTTTTTAAAAAGCGCCGCTAA
24066620 AAACATTTTA
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
40 33 0.38
41 55 0.62
ACGTcount: A:0.21, C:0.17, G:0.27, T:0.36
Consensus pattern (41 bp):
TTTTTTAAAAAGCGCCGCTAATGCTCGGTGTTTTAGTGGCG
Found at i:24067035 original size:21 final size:21
Alignment explanation
Indices: 24066994--24067044 Score: 52
Period size: 21 Copynumber: 2.4 Consensus size: 21
24066984 TAGGAATTAT
* *
24066994 GGTTTAAGGGTTGAGATTTAA
1 GGTTTAGGGGTTGAGAGTTAA
24067015 GGTTTAGGGGTT-AGAGGTTAA
1 GGTTTAGGGGTTGAGA-GTTAA
24067036 GAG-TTAGGG
1 G-GTTTAGGG
24067045 ATTTAAGGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 3 0.12
21 22 0.85
22 1 0.04
ACGTcount: A:0.25, C:0.00, G:0.41, T:0.33
Consensus pattern (21 bp):
GGTTTAGGGGTTGAGAGTTAA
Found at i:24071093 original size:18 final size:18
Alignment explanation
Indices: 24071020--24071080 Score: 95
Period size: 18 Copynumber: 3.3 Consensus size: 18
24071010 GATTATTAAT
*
24071020 ATAAATAATAAATAATTTA
1 ATAAA-AATATATAATTTA
*
24071039 ATCAAAATATATAATTTA
1 ATAAAAATATATAATTTA
24071057 ATAAAAATATATAATTTA
1 ATAAAAATATATAATTTA
24071075 ATAAAA
1 ATAAAA
24071081 TTCTTAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
18 35 0.90
19 4 0.10
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
ATAAAAATATATAATTTA
Found at i:24071118 original size:56 final size:54
Alignment explanation
Indices: 24071046--24071237 Score: 179
Period size: 56 Copynumber: 3.3 Consensus size: 54
24071036 TTAATCAAAA
*
24071046 TATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCT
1 TATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATA-TAATTATTCT
* * * * *
24071101 TATATGAATTTACT-AAAATCATAAAATATAATACTATAAAATATAATTTAAAATAATTATTAT
1 TATAT-AATTTAATAAAAAT-ATATAAT-T--TA--ATAAAAT-T--CTTAATATAATTATTCT
*
24071164 TAAATATAATTTAATAATAATATATAATTTAATAAAATTCTTAATATAATTATTCT
1 T--ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATAATTATTCT
*
24071220 TATATGAATTTACTAAAA
1 TATAT-AATTTAATAAAA
24071238 TCATAATATA
Statistics
Matches: 109, Mismatches: 14, Indels: 28
0.72 0.09 0.19
Matches are distributed among these distances:
54 4 0.04
55 20 0.18
56 28 0.26
57 1 0.01
58 1 0.01
59 9 0.08
61 9 0.08
62 1 0.01
63 10 0.09
64 18 0.17
65 8 0.07
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (54 bp):
TATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATAATTATTCT
Found at i:24071175 original size:26 final size:26
Alignment explanation
Indices: 24071139--24071217 Score: 86
Period size: 28 Copynumber: 2.9 Consensus size: 26
24071129 TAATACTATA
24071139 AAATATAATTTAAAATAATTATTATT
1 AAATATAATTTAAAATAATTATTATT
*
24071165 AAATATAATTTAATAATAATATATAATT
1 AAATATAATTTAA-AATAAT-TATTATT
* * *
24071193 TAATAAAATTCTTAATATAATTATT
1 AAATATAA-T-TTAAAATAATTATT
24071218 CTTATATGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 13 0.30
27 6 0.14
28 15 0.34
29 6 0.14
30 4 0.09
ACGTcount: A:0.53, C:0.01, G:0.00, T:0.46
Consensus pattern (26 bp):
AAATATAATTTAAAATAATTATTATT
Found at i:24071199 original size:59 final size:60
Alignment explanation
Indices: 24071047--24071251 Score: 150
Period size: 59 Copynumber: 3.4 Consensus size: 60
24071037 TAATCAAAAT
* * * *
24071047 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGA
1 ATATAATTTAATAATAATATATAATTTAATAAAA-TCATAATATTAAATATTATTATATAA
* * ** * * *
24071108 ATTTACTAAAATCATAAAATATAATACT-ATAAAAT-ATAAT-TTAAAATAATTATTAT-TAA
1 ATATAATTTAATAATAATATATAAT-TTAATAAAATCATAATATT-AAAT-ATTATTATATAA
* * * *
24071167 ATATAATTTAATAATAATATATAATTTAATAAAATTCTTAATA-TAATTATTCTTATATGA
1 ATATAATTTAATAATAATATATAATTTAATAAAA-TCATAATATTAAATATTATTATATAA
* * ** *
24071227 ATTTACTAAAATCATAATATATAAT
1 ATATAATTTAATAATAATATATAAT
24071252 ACTATAAAAA
Statistics
Matches: 109, Mismatches: 27, Indels: 17
0.71 0.18 0.11
Matches are distributed among these distances:
58 3 0.03
59 42 0.39
60 34 0.31
61 29 0.27
62 1 0.01
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (60 bp):
ATATAATTTAATAATAATATATAATTTAATAAAATCATAATATTAAATATTATTATATAA
Found at i:24071263 original size:120 final size:120
Alignment explanation
Indices: 24071047--24071265 Score: 397
Period size: 119 Copynumber: 1.8 Consensus size: 120
24071037 TAATCAAAAT
24071047 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
1 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
24071112 ACTAAAATCATAAAATATAATACTATAAAATATAATTTAAAATAATTATTATTAA
66 ACTAAAATCATAAAATATAATACTATAAAATATAATTTAAAATAATTATTATTAA
* *
24071167 ATATAATTTAATAATAATATATAATTTAATAAAATTCTTAATA-TAATTATTCTTATATGAATTT
1 ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
*
24071231 ACTAAAATCATAATATATAATACTATAAAA-ATAAT
66 ACTAAAATCATAAAATATAATACTATAAAATATAAT
24071266 ATATAATCTA
Statistics
Matches: 96, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
118 5 0.05
119 49 0.51
120 42 0.44
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.42
Consensus pattern (120 bp):
ATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATATTCTTATATGAATTT
ACTAAAATCATAAAATATAATACTATAAAATATAATTTAAAATAATTATTATTAA
Found at i:24072751 original size:49 final size:51
Alignment explanation
Indices: 24072655--24072760 Score: 146
Period size: 49 Copynumber: 2.1 Consensus size: 51
24072645 GAAAAAAAAC
* *
24072655 AAATTAAAATTAAGTTTAATATATCATTAATCAAAATGTGAACACTTTATA
1 AAATTAAAATTAAGTTTAATATATCATGAATCAAAATGTCAACACTTTATA
* *
24072706 AAATTAAAATTAAG-TTCA-ATATCATGAATCAAAA-GCTCAATACTTTATA
1 AAATTAAAATTAAGTTTAATATATCATGAATCAAAATG-TCAACACTTTATA
24072755 AAATTA
1 AAATTA
24072761 TAACACATGA
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
48 1 0.02
49 32 0.64
50 3 0.06
51 14 0.28
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (51 bp):
AAATTAAAATTAAGTTTAATATATCATGAATCAAAATGTCAACACTTTATA
Found at i:24076424 original size:21 final size:20
Alignment explanation
Indices: 24076380--24076423 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
24076370 CATAGAACAC
*
24076380 AAAAGAAGGGCCAAGTAGAA
1 AAAAGAAAGGCCAAGTAGAA
24076400 AAAAGAAAGGCCAAGTAGAA
1 AAAAGAAAGGCCAAGTAGAA
24076420 AAAA
1 AAAA
24076424 ATTATCCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.61, C:0.09, G:0.25, T:0.05
Consensus pattern (20 bp):
AAAAGAAAGGCCAAGTAGAA
Found at i:24077448 original size:6 final size:6
Alignment explanation
Indices: 24077437--24077461 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
24077427 CAACTAGAAG
24077437 GAAGAT GAAGAT GAAGAT GAAGAT G
1 GAAGAT GAAGAT GAAGAT GAAGAT G
24077462 GCGAATGGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (6 bp):
GAAGAT
Found at i:24078453 original size:85 final size:86
Alignment explanation
Indices: 24078335--24078504 Score: 279
Period size: 85 Copynumber: 2.0 Consensus size: 86
24078325 TTTGTAGTGG
24078335 CGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTAGAAGCGCCGCT
1 CGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTAGAAGCGCCGCT
**
24078400 AAAGGTCATGGTCTTTAGCGA
66 AAAGGTCATAATCTTTAGCGA
* * *
24078421 CGTTTGTGGTAGAAGCGCTG-TTAAGGTCATGGTCTTTAGCGGTGTTTGTGGTAGAAGCGCCGCT
1 CGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTAGAAGCGCCGCT
*
24078485 AAATGTCATAATCTTTAGCG
66 AAAGGTCATAATCTTTAGCG
24078505 GCATTTTTTC
Statistics
Matches: 78, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
85 59 0.76
86 19 0.24
ACGTcount: A:0.20, C:0.17, G:0.32, T:0.31
Consensus pattern (86 bp):
CGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCGTTTGTGGTAGAAGCGCCGCT
AAAGGTCATAATCTTTAGCGA
Found at i:24078460 original size:42 final size:43
Alignment explanation
Indices: 24078333--24078506 Score: 278
Period size: 43 Copynumber: 4.1 Consensus size: 43
24078323 TTTTTGTAGT
24078333 GGCGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGC
1 GGCGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGC
24078376 GGCGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGC
1 GGCGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGC
* * *
24078419 GACGTTTGTGGTAGAAGCGCTG-TTAAGGTCATGGTCTTTAGC
1 GGCGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGC
* * **
24078461 GGTGTTTGTGGTAGAAGCGCCGCTAAATGTCATAATCTTTAGC
1 GGCGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGC
24078504 GGC
1 GGC
24078507 ATTTTTTCAA
Statistics
Matches: 119, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
42 38 0.32
43 81 0.68
ACGTcount: A:0.20, C:0.17, G:0.33, T:0.30
Consensus pattern (43 bp):
GGCGTTTGTGGTAGAAGCGCCGCTAAAGGTCATGGTCTTTAGC
Found at i:24081186 original size:871 final size:857
Alignment explanation
Indices: 24079538--24081368 Score: 2236
Period size: 871 Copynumber: 2.1 Consensus size: 857
24079528 TTAAGGCCGG
*
24079538 TTTAGATTCC-CTTGGTTTTCTGAAAA-TGTAGATGAT--ATTCATTGTATGTATATACATTCTA
1 TTTAGA-TCCTCTTGGTTTTCT-AAAATTGTAGATGATGGATTCAATGTATGTATATACATTCTA
* * *
24079599 GATAAGCTTGGGGCAACACAGAA-GAAACAAAAGGCTTTCAGGCTTGCTAAGTTAATATCAAAGT
64 GATAAGCTTGGGACAACACA-AAGGAAATAAAAGGCTTTCAGGCTTGCTAAGTTAATAGCAAAGT
* * *
24079663 CATTACTAACCTCTTAATGTACTTAGTCAATTTATTTGAGCACATACCCTTCAAGGGTATTGCTC
128 CATTACTAACCTCTTAAGGTACCTAGTCAATTTATTTGAGCACACACCCTTCAAGGGTATTGCTC
** * *
24079728 ACTAAGTCAAAAGAAGAGTCGCTTTTAGCCTCTTAAGGCACTTAGCAACTTATTTAAAGCAAACA
193 ACTAAGTCAAAAGAAGAACCGCTTCTAACCTCTTAAGGCACTTAGCAACTTATTTAAAGCAAACA
*
24079793 CCCCTTGCAAATATCCTCACTAAGTCAATAGCAAAAATAAGGCTAACCTTGAAGGCATTTAGCCA
258 CCCCTTGCAAATATCCTCACTAAGTCAATAGCAAAAATAAGGCTAACCTTGAAGGCACTTAGCCA
* * *
24079858 AATTTACAAGTTATAAAACAGACACTCATCATAGATAATGCTTACTAAGTTAATAATAGAAACCA
323 AATTTACAAGTTATAAAACAAACACCCATCACAGATAATGCTTACTAAGTTAATAATAGAAACCA
* * *
24079923 TTTCTAGCCTATTAAATAATGTGCATAGTTTTTTTTTTTTTTTTATAAAAAGACCTAACATACAA
388 TTTCTAGCCTATTAAAGAATGTGCATA-------TATCTTTTTTATAAAAAGACCTAACATACAA
* * **
24079988 CACAAAGGCTTCGCCTCTACTTTTATCTCAGATAAGGCCACGTTATAAACTATTCCTCAACTGAG
446 CACAAAGGCTTCGCCCCTACTTTTATATCAGATAAAACCACGTTATAAACTATTCCTCAACTGAG
* *
24080053 AGCAATTATTATGCATATACAAATATTATCTAAACTCATCAAAGGCCTACCTATTTCATCCCCAC
511 AGCAATTATTATGCATATACAAATATTATCCAAACTCATCAAAGGCCTACCTATTACATCCCCAC
*
24080118 GCTATTAGGCTATTATTACAAAGGGCCTACACAAGAGGGCAAATCACCTATTTTATTTTCTAAAA
576 GCTATTAGGCTATTATTACAAACGGCCTACACAAGAGGGCAAATCACCTATTTTATTTTCTAAAA
* * *
24080183 GGAGGGGCTTGAGAGAGAAAGGGGAGATTCTTCATTTTAAAAAGATCCACTTCCATGGTCACTAC
641 GGAGGGGCTTGAGAGAGAAAGGAGAGATTCTTCACTTTAAAAAGACCCACTTCCATGGTCACTAC
* *
24080248 GCACTTTCCGCATTGAACTAAATAGGGTGAATCGTCCTAAAGTCCAAACTCTAAATCCTAAATCA
706 GCACTTTCCGCATTGAACTAAATAGGGTGAACCATCCTAAAGTCCAAACTCTAAATCCTAAATCA
* * * *
24080313 TCAACTGTCATTTTGTACTTTAACACATCCACATTATAGATATGTCATAGTCTAATATGG-ATTA
771 TCAACTATCACTTTGTACATTAACACATCCACATTATAAATATGTCATAGTCTAATA-GGAATTA
* **
24080377 CAAAATGATTTAA-TTAAATTTG-A
835 CAAAAT-AATTAAGTTAAA-GCGAA
* *
24080400 TTTAGATCCTCTTGGTTTTCTAAAATTGTAGATGATGGAATTCAATATATGTATATACGTTCTAG
1 TTTAGATCCTCTTGGTTTTCTAAAATTGTAGATGATGG-ATTCAATGTATGTATATACATTCTAG
* * * **
24080465 TTAAGCTTGGGACAACACAAAGGAAATAAAAGGCTTTCAGGCTTTCTAAGTTAATAGCATAGTTG
65 ATAAGCTTGGGACAACACAAAGGAAATAAAAGGCTTTCAGGCTTGCTAAGTTAATAGCAAAGTCA
* * * * * * *
24080530 TTGCTAGCCTCTTTAAGGTACCTGGTCAATTTATTTGAGCACACACCTTTTAATGGTATTGCTTA
130 TTACTAACCTC-TTAAGGTACCTAGTCAATTTATTTGAGCACACACCCTTCAAGGGTATTGCTCA
24080595 CTAAGTCAATAA-AAGAACCGCTTCTAACCTCTTAAGGCACTTAGCAACTTATTTAAAGCAAACA
194 CTAAGTCAA-AAGAAGAACCGCTTCTAACCTCTTAAGGCACTTAGCAACTTATTTAAAGCAAACA
* * ** * * ** * *
24080659 CCTCTTGCAAATATGCTTGCTAAGTCAATAGTAGAAATACTGTTAACCTCTTAAGGCACTTAGCC
258 CCCCTTGCAAATATCCTCACTAAGTCAATAGCAAAAATAAGGCTAACCT-TGAAGGCACTTAGCC
* * *
24080724 AAAATTTACAAGTTATAAAACAAACACCCCTCACAGATAATGCTTACTAAGTTAATAGTATAAAC
322 -AAATTTACAAGTTATAAAACAAACACCCATCACAGATAATGCTTACTAAGTTAATAATAGAAAC
* * * * * *
24080789 CATTTCTAGCCTCTTAAGGAATGTGCATA-ATCTTTTTTATAAAAAGGCTTAGCGTACAACACAA
386 CATTTCTAGCCTATTAAAGAATGTGCATATATCTTTTTTATAAAAAGACCTAACATACAACACAA
* * * * * *
24080853 AGGTTTCTCCCCTACTTTTATATCGGATAAAACCACTTTATAACCTATATTCCTCAAGTGAGAGC
451 AGGCTTCGCCCCTACTTTTATATCAGATAAAACCACGTTATAAAC--TATTCCTCAACTGAGAGC
* * ** * *
24080918 AATTGTTATGCATATACAAATATTA-CCAAATCTCATTAGGGGGTCTACCTATTACATCCCCATG
514 AATTATTATGCATATACAAATATTATCCAAA-CTCATCA-AAGGCCTACCTATTACATCCCCACG
* * * *
24080982 CTATTAGGCTATTATTACAAACGGCCTACATAAGAGGGCAAATCTCCTCCTCTTTTTTTTTTTTT
577 CTATTAGGCTATTATTACAAACGGCCTACACAAGAGGGCAAA--T-C-AC-C---TATTTTATTT
* * * * **
24081047 TCTAAAAGGAGGGGCTTGAGATATTAAA-GAGAGTTTTTTTGCTTTAAAAAGACCCACTTCCATG
634 TCTAAAAGGAGGGGCTTGAGAGA-GAAAGGAGAGATTCTTCACTTTAAAAAGACCCACTTCCATG
* * * * * *
24081111 GTCA-TCACGCACTTTTCGCCTTGTACTAAATGGGGTGAACCATCTTAAA-TCTTAAACTCTAAA
698 GTCACT-ACGCACTTTCCGCATTGAACTAAATAGGGTGAACCATCCTAAAGTC-CAAACTCTAAA
* *
24081174 TTCTAAATCATCAATTATCACTTTGTACATTAACACATCCACATTATAAATATGTCATAGTCTAA
761 TCCTAAATCATCAACTATCACTTTGTACATTAACACATCCACATTATAAATATGTCATAGTCTAA
24081239 TAGGAATTACAAAATAATTAAGTTAAAGCGAA
826 TAGGAATTACAAAATAATTAAGTTAAAGCGAA
* * * * * *
24081271 TTTAGATTCTTTTGGTTTTCT-GAATCTGTAGATGATGGCATTCAGTGCATGTGTATAGCATTCT
1 TTTAGATCCTCTTGGTTTTCTAAAAT-TGTAGATGATGG-ATTCAATGTATGTATATA-CATTCT
* * *
24081335 AGCTAAGCTTGGGACAAAAC-AGGAGAAATAAAAG
63 AGATAAGCTTGGGACAACACAAAG-GAAATAAAAG
24081369 AAAGAAAATG
Statistics
Matches: 826, Mismatches: 112, Indels: 52
0.83 0.11 0.05
Matches are distributed among these distances:
860 65 0.08
861 11 0.01
862 74 0.09
863 60 0.07
864 2 0.00
865 87 0.11
866 143 0.17
867 16 0.02
868 85 0.10
870 14 0.02
871 233 0.28
872 36 0.04
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (857 bp):
TTTAGATCCTCTTGGTTTTCTAAAATTGTAGATGATGGATTCAATGTATGTATATACATTCTAGA
TAAGCTTGGGACAACACAAAGGAAATAAAAGGCTTTCAGGCTTGCTAAGTTAATAGCAAAGTCAT
TACTAACCTCTTAAGGTACCTAGTCAATTTATTTGAGCACACACCCTTCAAGGGTATTGCTCACT
AAGTCAAAAGAAGAACCGCTTCTAACCTCTTAAGGCACTTAGCAACTTATTTAAAGCAAACACCC
CTTGCAAATATCCTCACTAAGTCAATAGCAAAAATAAGGCTAACCTTGAAGGCACTTAGCCAAAT
TTACAAGTTATAAAACAAACACCCATCACAGATAATGCTTACTAAGTTAATAATAGAAACCATTT
CTAGCCTATTAAAGAATGTGCATATATCTTTTTTATAAAAAGACCTAACATACAACACAAAGGCT
TCGCCCCTACTTTTATATCAGATAAAACCACGTTATAAACTATTCCTCAACTGAGAGCAATTATT
ATGCATATACAAATATTATCCAAACTCATCAAAGGCCTACCTATTACATCCCCACGCTATTAGGC
TATTATTACAAACGGCCTACACAAGAGGGCAAATCACCTATTTTATTTTCTAAAAGGAGGGGCTT
GAGAGAGAAAGGAGAGATTCTTCACTTTAAAAAGACCCACTTCCATGGTCACTACGCACTTTCCG
CATTGAACTAAATAGGGTGAACCATCCTAAAGTCCAAACTCTAAATCCTAAATCATCAACTATCA
CTTTGTACATTAACACATCCACATTATAAATATGTCATAGTCTAATAGGAATTACAAAATAATTA
AGTTAAAGCGAA
Found at i:24083288 original size:157 final size:158
Alignment explanation
Indices: 24082807--24083538 Score: 1184
Period size: 157 Copynumber: 4.7 Consensus size: 158
24082797 AAAGTTGTCG
*
24082807 AACATAATATACTAAAATAAT-TAAAATAATAAAA-TACG-AAATAATATATTTTTATTGAAAGT
1 AACATAATGTACTAAAATAATGTAAAATAATAAAATTA-GAAAATAATATATTTTTATTGAAAGT
* * * *
24082869 AATAAAATGCAGGAA-AAAGATACGAACAAAGGGTCAAAATAAGGGTTAATTTTTGAAATTTATT
65 AATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATT
24082933 T-AAAAACACACTAAATTAATACATTTCA
130 TAAAAAACACACTAAATTAATACATTTCA
24082961 AACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
1 AACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
*
24083026 ATAAAATTC-GG--GAAAAATACGAACCAAGGGCCGAAATAAGGGTT--TTTTT-AAATTTATTT
66 ATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
24083085 AAAAAACACACTAAATTAATACATTTCA
131 AAAAAACACACTAAATTAATACATTTCA
* * * *
24083113 AACATAATGTACTAAAATAATTTAAAATTATAAAATTATAAAGTAATATATTTTTATTGAAAGTA
1 AACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
* *
24083178 ATAAAATTCGGGAAGAAAAATATGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
66 ATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
24083243 -AAAAACACACTAAATTAATACATTTCA
131 AAAAAACACACTAAATTAATACATTTCA
24083270 AACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
1 AACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
* *
24083335 ATAAAATTCGGGAA-AAAAATACAAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
66 ATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
* *
24083399 AAAAAACACACTAAATGAGTACATTTCA
131 AAAAAACACACTAAATTAATACATTTCA
*
24083427 AACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
1 AACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
* * *
24083492 ATAAAATTCAGGAAGAAAAATACAAACAAATGACCGAAATAAGGGTT
66 ATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTT
24083539 TTTTACTAAA
Statistics
Matches: 541, Mismatches: 24, Indels: 22
0.92 0.04 0.04
Matches are distributed among these distances:
151 10 0.02
152 102 0.19
153 2 0.00
154 48 0.09
155 47 0.09
156 83 0.15
157 209 0.39
158 40 0.07
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.30
Consensus pattern (158 bp):
AACATAATGTACTAAAATAATGTAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
ATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
AAAAAACACACTAAATTAATACATTTCA
Found at i:24083288 original size:309 final size:311
Alignment explanation
Indices: 24082807--24083538 Score: 1224
Period size: 309 Copynumber: 2.4 Consensus size: 311
24082797 AAAGTTGTCG
*
24082807 AACATAATATACTAAAATAA-TTAAAATAATAAAA-TACGAAATAATATATTTTTATTGAAAGTA
1 AACATAATGTACTAAAATAATTTAAAATAATAAAATTA-GAAATAATATATTTTTATTGAAAGTA
* * * *
24082870 ATAAAATGCAGGAA-AAAGATACGAACAAAGGGTCAAAATAAGGGTTAATTTTTGAAATTTATTT
65 ATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
24082934 AAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA
130 AAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA
* *
24082999 GAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGG-AAAAATACGAACCAAGGGCCGAAAT
195 GAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAAAATACAAACAAAGGGCCGAAAT
*
24083063 AAGGGTT-TTTTT-AAATTTATTTAAAAAACACACTAAATTAATACATTTCA
260 AAGGGTTATTTTTGAAATTTATTTAAAAAACACACTAAATGAATACATTTCA
* *
24083113 AACATAATGTACTAAAATAATTTAAAATTATAAAATTATAAAGTAATATATTTTTATTGAAAGTA
1 AACATAATGTACTAAAATAATTTAAAATAATAAAATTAGAAA-TAATATATTTTTATTGAAAGTA
* *
24083178 ATAAAATTCGGGAAGAAAAATATGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
65 ATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTT
24083243 AAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA
130 AAAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTA
24083308 GAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAAAAATACAAACAAAGGGCCGAAA
195 GAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGG-AAAAAATACAAACAAAGGGCCGAAA
*
24083373 TAAGGGTTAATTTTTGAAATTTATTTAAAAAACACACTAAATGAGTACATTTCA
259 TAAGGGTT-ATTTTTGAAATTTATTTAAAAAACACACTAAATGAATACATTTCA
*
24083427 AACATAATGTACTAAAATAATATAAAATAATAAAATTAGAAAATAATATATTTTTATTGAAAGTA
1 AACATAATGTACTAAAATAATTTAAAATAATAAAATTAG-AAATAATATATTTTTATTGAAAGTA
* * *
24083492 ATAAAATTCAGGAAGAAAAATACAAACAAATGACCGAAATAAGGGTT
65 ATAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTT
24083539 TTTTACTAAA
Statistics
Matches: 395, Mismatches: 21, Indels: 12
0.92 0.05 0.03
Matches are distributed among these distances:
306 19 0.05
307 16 0.04
308 36 0.09
309 150 0.38
311 30 0.08
313 5 0.01
314 136 0.34
315 3 0.01
ACGTcount: A:0.52, C:0.08, G:0.11, T:0.30
Consensus pattern (311 bp):
AACATAATGTACTAAAATAATTTAAAATAATAAAATTAGAAATAATATATTTTTATTGAAAGTAA
TAAAATTCAGGAAGAAAAATACGAACAAAGGGCCGAAATAAGGGTTAATTTTTGAAATTTATTTA
AAAACACACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATTAG
AAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGAAAAAATACAAACAAAGGGCCGAAATA
AGGGTTATTTTTGAAATTTATTTAAAAAACACACTAAATGAATACATTTCA
Found at i:24089160 original size:3 final size:3
Alignment explanation
Indices: 24089154--24089211 Score: 89
Period size: 3 Copynumber: 19.3 Consensus size: 3
24089144 CCGGCACCAC
* *
24089154 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTC CTT CTC
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
24089202 CTT CTC CTT C
1 CTT CTT CTT C
24089212 AGTTGGGTTG
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 49 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (3 bp):
CTT
Found at i:24106163 original size:21 final size:21
Alignment explanation
Indices: 24106139--24106192 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
24106129 TAAGTTGATT
24106139 ATTTTTATAATAAAAAATGTA
1 ATTTTTATAATAAAAAATGTA
* * * * *
24106160 ATTTTAATATTTAATAATTTA
1 ATTTTTATAATAAAAAATGTA
24106181 AGTTTTTATAAT
1 A-TTTTTATAAT
24106193 TTTTAAAAAT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 17 0.68
22 8 0.32
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (21 bp):
ATTTTTATAATAAAAAATGTA
Found at i:24106215 original size:29 final size:31
Alignment explanation
Indices: 24106178--24106257 Score: 103
Period size: 29 Copynumber: 2.6 Consensus size: 31
24106168 ATTTAATAAT
*
24106178 TTAAGTTTTTATAATTTTTAA-AAATT-AAA
1 TTAAATTTTTATAATTTTTAAGAAATTAAAA
24106207 TTAAATTTTTATAA-TTTTAAGAAATTAAAA
1 TTAAATTTTTATAATTTTTAAGAAATTAAAA
24106237 TATAAATTTATTATATATTTT
1 T-TAAATTT-TTATA-ATTTT
24106258 ATAGATTATA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
28 6 0.14
29 18 0.41
30 4 0.09
31 7 0.16
32 5 0.11
33 1 0.02
34 3 0.07
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (31 bp):
TTAAATTTTTATAATTTTTAAGAAATTAAAA
Found at i:24115636 original size:20 final size:21
Alignment explanation
Indices: 24115611--24115649 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
24115601 TGATAAGAGC
24115611 TTTTATAT-ATTTTTTTATGA
1 TTTTATATAATTTTTTTATGA
*
24115631 TTTTATTTAATTTTTTTAT
1 TTTTATATAATTTTTTTAT
24115650 ATAATATTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74
Consensus pattern (21 bp):
TTTTATATAATTTTTTTATGA
Done.