Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 78 of 173
Found at i:24115657 original size:20 final size:21
Alignment explanation
Indices: 24115619--24115659 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
24115609 GCTTTTATAT
**
24115619 ATTTTTTTATGATTTTATTTA
1 ATTTTTTTATGATAATATTTA
24115640 ATTTTTTTAT-ATAATATTTA
1 ATTTTTTTATGATAATATTTA
24115660 GAATTATTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (21 bp):
ATTTTTTTATGATAATATTTA
Found at i:24116070 original size:43 final size:43
Alignment explanation
Indices: 24115858--24116058 Score: 280
Period size: 43 Copynumber: 4.7 Consensus size: 43
24115848 TAGAAATAAG
*
24115858 CGCCGCTATAGAT-ATGACTTTTAGCGGCGC-TTTTCGACAAA
1 CGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAA
* *
24115899 CGCCGCTATAGGTCATGACTTTTAGCGGAGCTTTTTCCACAAA
1 CGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAA
** *
24115942 TACCGCTATAGATCATGACTTTTAGCGGCACTTTTTCCACAAA
1 CGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAA
** * *
24115985 CGCCGCTATAGATCGCGACTTTTAGCGACGCTTTTTCTACAAA
1 CGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAA
* *
24116028 CGCTGCTATAGATCATTACTTTTAGCGGCGC
1 CGCCGCTATAGATCATGACTTTTAGCGGCGC
24116059 ATCTCACACA
Statistics
Matches: 138, Mismatches: 20, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
41 12 0.09
42 16 0.12
43 110 0.80
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (43 bp):
CGCCGCTATAGATCATGACTTTTAGCGGCGCTTTTTCCACAAA
Found at i:24116513 original size:21 final size:21
Alignment explanation
Indices: 24116489--24116540 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
24116479 CTTCGTTATA
*
24116489 GCCTCTGCTTCTCTCGCTGCT
1 GCCTCTGCTTCTCTCGCTGCC
24116510 GCCTCTGCTTCTCTCGCTGCC
1 GCCTCTGCTTCTCTCGCTGCC
*
24116531 GCATCTGCTT
1 GCCTCTGCTT
24116541 TAAGTTGTAG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.02, C:0.42, G:0.19, T:0.37
Consensus pattern (21 bp):
GCCTCTGCTTCTCTCGCTGCC
Found at i:24118678 original size:22 final size:21
Alignment explanation
Indices: 24118627--24118680 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
24118617 TTTTATTTTG
* **
24118627 CAAAAATTAAATCCTAATTAC
1 CAAAAAATAAATCCTAAAGAC
*
24118648 TAAAGAAATAAATTCCTAAAGAC
1 CAAA-AAATAAA-TCCTAAAGAC
24118671 CAAAAAATAA
1 CAAAAAATAA
24118681 TTAAATAAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
21 3 0.12
22 12 0.46
23 11 0.42
ACGTcount: A:0.59, C:0.15, G:0.04, T:0.22
Consensus pattern (21 bp):
CAAAAAATAAATCCTAAAGAC
Found at i:24122548 original size:22 final size:22
Alignment explanation
Indices: 24122496--24122569 Score: 62
Period size: 22 Copynumber: 3.3 Consensus size: 22
24122486 CAGCAAAGCT
* *
24122496 GCCAGTAATCAGAATGGCTA-AGA
1 GCCA-TAAACAGAATGACTATA-A
* *
24122519 GCCGTAAACAGGAT-AGCTATAA
1 GCCATAAACAGAATGA-CTATAA
*
24122541 GCTATAAACAGAATGACTATAA
1 GCCATAAACAGAATGACTATAA
24122563 GCCATAA
1 GCCATAA
24122570 GTACAGTAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 7
0.73 0.15 0.13
Matches are distributed among these distances:
22 35 0.88
23 5 0.12
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (22 bp):
GCCATAAACAGAATGACTATAA
Found at i:24122711 original size:27 final size:27
Alignment explanation
Indices: 24122681--24122743 Score: 119
Period size: 27 Copynumber: 2.4 Consensus size: 27
24122671 CAAAGCTACT
24122681 AGTAACAGTATATGTGGCCAAGCCACC
1 AGTAACAGTATATGTGGCCAAGCCACC
24122708 AGTAACAGTATATGTGGCCAAGCCACC
1 AGTAACAGTATATGTGGCCAAGCCACC
24122735 AGT-ACAGTA
1 AGTAACAGTA
24122744 CTTCCTCCTT
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
26 6 0.17
27 30 0.83
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.19
Consensus pattern (27 bp):
AGTAACAGTATATGTGGCCAAGCCACC
Found at i:24122834 original size:24 final size:24
Alignment explanation
Indices: 24122813--24122864 Score: 95
Period size: 24 Copynumber: 2.2 Consensus size: 24
24122803 TCAGAATCGA
24122813 TCATAAAAATTACAGACAAATCAG
1 TCATAAAAATTACAGACAAATCAG
*
24122837 TCATAAAAATTACAGACAAATTAG
1 TCATAAAAATTACAGACAAATCAG
24122861 TCAT
1 TCAT
24122865 TTACATCATG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.52, C:0.15, G:0.08, T:0.25
Consensus pattern (24 bp):
TCATAAAAATTACAGACAAATCAG
Found at i:24123023 original size:27 final size:28
Alignment explanation
Indices: 24122993--24123185 Score: 140
Period size: 27 Copynumber: 7.1 Consensus size: 28
24122983 CATCACGGTC
* *
24122993 ATTTTATCCTA-CATGGGTATTTTGATA
1 ATTTTATCCTATCAGGGGTATTTCGATA
* *
24123020 ATTTTAACC-ATTAGGGGTATTTCGATA
1 ATTTTATCCTATCAGGGGTATTTCGATA
* *
24123047 ATTTTA-CCCATCGGGGGTATTTCGATA
1 ATTTTATCCTATCAGGGGTATTTCGATA
*
24123074 ATTTTA--CTCATCCA-GGGCATTTCGATA
1 ATTTTATCCT-AT-CAGGGGTATTTCGATA
* *
24123101 ATTTTA-CCCATC-GAGAGTATTTC-AGTA
1 ATTTTATCCTATCAG-GGGTATTTCGA-TA
* *
24123128 ATTTTA-CCCATCGGGGGTATTTCGATA
1 ATTTTATCCTATCAGGGGTATTTCGATA
* *
24123155 AATTTA-CCCATC-GAGGGTATTTCGATA
1 ATTTTATCCTATCAG-GGGTATTTCGATA
24123182 ATTT
1 ATTT
24123186 GTTCACTAAT
Statistics
Matches: 140, Mismatches: 15, Indels: 22
0.79 0.08 0.12
Matches are distributed among these distances:
26 7 0.05
27 129 0.92
28 4 0.03
ACGTcount: A:0.26, C:0.17, G:0.18, T:0.39
Consensus pattern (28 bp):
ATTTTATCCTATCAGGGGTATTTCGATA
Found at i:24123065 original size:54 final size:54
Alignment explanation
Indices: 24123007--24123185 Score: 238
Period size: 54 Copynumber: 3.3 Consensus size: 54
24122997 TATCCTACAT
* * *
24123007 GGGTATTTTGATAATTTTAACCATTAGGGGTATTTCGATAATTTTACCCATCGG
1 GGGTATTTCGATAATTTTAACCATCAGGGGTATTTCGATAATTTTACCCATCGA
*
24123061 GGGTATTTCGATAATTTT-ACTCATCCA-GGGCATTTCGATAATTTTACCCATCGA
1 GGGTATTTCGATAATTTTAAC-CAT-CAGGGGTATTTCGATAATTTTACCCATCGA
* * * *
24123115 GAGTATTTC-AGTAATTTTACCCATCGGGGGTATTTCGATAAATTTACCCATCGA
1 GGGTATTTCGA-TAATTTTAACCATCAGGGGTATTTCGATAATTTTACCCATCGA
24123169 GGGTATTTCGATAATTT
1 GGGTATTTCGATAATTT
24123186 GTTCACTAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 12
0.83 0.08 0.09
Matches are distributed among these distances:
53 4 0.04
54 102 0.94
55 3 0.03
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.39
Consensus pattern (54 bp):
GGGTATTTCGATAATTTTAACCATCAGGGGTATTTCGATAATTTTACCCATCGA
Found at i:24123105 original size:81 final size:81
Alignment explanation
Indices: 24123011--24123185 Score: 246
Period size: 81 Copynumber: 2.2 Consensus size: 81
24123001 CTACATGGGT
* *
24123011 ATTTTGATAATTTTAACCATTAG-GGGTATTTC-GATAATTTTACCCATCGGGGGTATTTCGATA
1 ATTTCGATAATTTTAACCA-TAGAGAGTATTTCAG-TAATTTTACCCATCGGGGGTATTTCGATA
* *
24123074 ATTTTACTCATCCAGGGC
64 AATTTACCCATCCAGGGC
* *
24123092 ATTTCGATAATTTTACCCATCGAGAGTATTTCAGTAATTTTACCCATCGGGGGTATTTCGATAAA
1 ATTTCGATAATTTTAACCATAGAGAGTATTTCAGTAATTTTACCCATCGGGGGTATTTCGATAAA
* *
24123157 TTTACCCATCGAGGGT
66 TTTACCCATCCAGGGC
24123173 ATTTCGATAATTT
1 ATTTCGATAATTT
24123186 GTTCACTAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
80 2 0.02
81 81 0.96
82 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.18, T:0.39
Consensus pattern (81 bp):
ATTTCGATAATTTTAACCATAGAGAGTATTTCAGTAATTTTACCCATCGGGGGTATTTCGATAAA
TTTACCCATCCAGGGC
Found at i:24124934 original size:45 final size:45
Alignment explanation
Indices: 24124841--24124950 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
24124831 AATAGTACTC
* * ** *
24124841 GGTGAAATCAGTACATAGCAACCACCTTTATACTCAATGGTACCG
1 GGTGAAATCAGCACATAGCAACCAACTTTATACTCAATAATACAG
** * *
24124886 GGTGAAATCAGCACATAGCAACCAACTTTATTTTCATTAATATAG
1 GGTGAAATCAGCACATAGCAACCAACTTTATACTCAATAATACAG
* *
24124931 GGTGGAATCAGCGCATAGCA
1 GGTGAAATCAGCACATAGCA
24124951 TCCGCCTATA
Statistics
Matches: 54, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.25
Consensus pattern (45 bp):
GGTGAAATCAGCACATAGCAACCAACTTTATACTCAATAATACAG
Found at i:24129918 original size:20 final size:20
Alignment explanation
Indices: 24129893--24129931 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
24129883 TACTTTCTTC
24129893 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
24129913 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
24129932 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:24130360 original size:56 final size:52
Alignment explanation
Indices: 24130233--24130374 Score: 171
Period size: 50 Copynumber: 2.7 Consensus size: 52
24130223 CTCATATCGG
* * *
24130233 TGCCCATGCCATGTCCTAGGCATGGTCTTACGAGGGACCTCTCATCTCAGTA
1 TGCCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATCTCAGTA
*
24130285 --CCAACGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATAACCTCAGTAA
1 TGCCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCAT---CTCAGT-A
* * *
24130339 TGCCAATGCCATGTCCCAGACATGGACTTACATGGG
1 TGCCAATGCCATGTCCTAGACATGGTCTTACGTGGG
24130375 GTCTCATCAT
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
50 39 0.51
53 6 0.08
54 1 0.01
56 30 0.39
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (52 bp):
TGCCAATGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATCTCAGTA
Found at i:24133361 original size:516 final size:516
Alignment explanation
Indices: 24132385--24146376 Score: 22631
Period size: 516 Copynumber: 27.1 Consensus size: 516
24132375 TTATGTATGA
* *
24132385 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAAAGATTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
*
24132450 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGCGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
* * * *
24132515 GATCCAGCACAAATTTTGGCTCCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
* * *
24132580 CAGTGATGATTAGTCCCTGAAACTTTCTAGTTTCCATTTTCTAGGTACGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
* * * *
24132645 TACACTTTCGTGTAATATTTTAATTGTGTTTTTGTATAAATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
* * *
24132710 TAATGGCTTTTTATATAAAATGGATGAAATCGTAAAATAAGAACTACTTGAAAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
*
24132775 TTCATGACATTAAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
* *
24132840 AATTTAAAATGTATAGAAAATTGTTATTGAAAATAACTAATGTGTGCATAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
*
24132901 TTTCAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24132966 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24133031 GATCTAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
*
24133096 CAGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
* *
24133161 TGCATTTTCGTGTTATATTTTAGTTGTGTTTTTGTATATAGATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
* *
24133226 TAATGGCTTTTTATATAAAATGGATCAAATCATAAAATAAGAAATACTTGATAAATATAAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
* *
24133291 TTCATGACATTTAATGGATATGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
* *
24133356 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATATGTGCAAAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24133417 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
*
24133482 GAAAGTGATTATGGTTATAAAAAGGAGAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
* *
24133547 TATCCAGCACAAATTACGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
*
24133612 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCAGTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24133677 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
* *
24133742 TAATGGCTTTTTATATAAAATGGATGAAATCGTAAAATAAGAACTACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
* *
24133807 TTCATGACATTGAATGGATGTGGGAATCGTATGTTGTTGGATAACATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
*
24133872 AATTTAATATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATATAGAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAAT-TA-AAGAG
* * **
24133935 ATTCATGAAATGAATGGATATCAGAATAGTATGTGTTGGATAGCATGTATATGATGT-TGCAAAT
1 -TT--TG--A--AAT-GATA-C-G-A-A--A--TG--GG-TA-AAAG-A-A-CCTGTATG--AAT
* * ** * *
24133999 TTAACCTGTATGGAGAATTGTTATTCAAAATAACTATGTTGTATAA---ATTAAAGAGTT-TGAA
41 TTAA-C-------A-AA-TGGT-TT--AGATAAGAATG--G-A-AAGTGATT-ATG-GTTATAAA
* * * * * * * * * * * *
24134060 ATGATAAGAAATGGTAAAGACCTG-TTTGA-ATTTA-ACAATGGTTTAGAT-AAGAATGGAAAGT
87 AAG-GAA-AAATGG-GAA-TCGTGATTAGAGATTTATTCGATGGTTGAGATCCAGCA---CAA--
** ** * * * * * **
24134121 GATTATTTATAAATGGAAAATGGAATCGTGATTAGAG-ATTTATTC-GATGGTTGATATCCAGCA
143 -ATTATGGAT-TCTCG-ACA--G-CTC--GAGT-GAGCA-GTA-TCGGATCATT-ATAT--AGCA
** * * *** * ** * * *
24134184 CAAAT-T-ATGGATT-CTCGACAGCTCG--AGTGAGTAGTATCGGATCATAATATAGCAATCAGT
194 -ATCTGTGAT-GATTAGTC--C--CT-GAAACTTTCTAGT-T--G-CCATTTTCTAG--GTAAGT
* * * * ** *
24134244 GATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATA-TAGAAGTTACTGC
246 --TCA-TA-T---AG-AA--GT-TA-CTG-CATTTTC---GT--GTT-ATATTTTAA-TT-GTG-
* * * ** * *** * *
24134308 ATTTTCGTGT-TATAT-TTTAAT-TGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
289 -TTTT--TGTATATATATTAAATATATATAATTG--TAGAT-TT-AATGGCT-T--TT-TATATA
* * *** * ** * * * ** *
24134370 TAATGGCTTTTTAT-ATAAAATGGATCAAAT-CGT-A-AAATAAGAAATACTTGATAAATATGAA
343 AAATGG-ATCAAATCGTAAAAT--AAGAAATACTTGATAAATATG-AAGA---GAT--TCATGAC
24134431 GAGATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGT
399 ------------ATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGT
24134496 TGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
452 TGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
*
24134561 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAAAGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24134626 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24134691 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
24134756 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24134821 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
* *
24134886 TAATGGCTTTTTATATAAAATGGATGAAATCGTAAAATAA-AACTACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
* * *
24134950 TTCATCACATTGAATGGATGTGGGAATCGTATGTTGTTGGATAGCATGTATACGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
* *
24135015 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTACTGTGTGCTTAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24135076 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24135141 GAAAGTGATTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
66 GAAAGTGATTATGGTTATAAAAAGG-AAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
* *
24135206 AGATCCAGCACAAATTTTGGCTTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAA
130 AGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAA
24135271 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTA
195 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTA
24135336 CTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGAT
260 CTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGAT
24135401 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
325 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
24135466 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
390 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
24135531 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
455 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24135593 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
*
24135658 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTT-T
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
24135722 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
24135787 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
* *
24135852 TGCATTTTCGTATTATATTTTAATTGTGTTTTTGTACATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24135917 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24135982 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
*
24136047 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCTTAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24136108 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
*
24136173 GAAAGTGGTTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24136238 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
*
24136303 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATGGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24136368 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24136433 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24136498 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
*
24136563 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCTTAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24136624 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
*
24136689 GAAAGTGATTATTGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24136754 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
*
24136819 CAGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24136884 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24136949 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24137014 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
* * *
24137079 AATTTAAAATGTATAGGGAATTGTTATTCAAAATAACTACTGTGTGCTTAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24137140 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
* *
24137205 GAAAGTGGTTATAGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24137270 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
*
24137335 CAGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24137400 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24137465 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24137530 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
*
24137595 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCTTAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24137656 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
*
24137721 GAAAGTGGTTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24137786 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
*
24137851 CAGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24137916 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24137981 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATAT-AACGAG
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAA-GAG
24138045 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
390 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
*
24138110 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTACTGTGTGCATAAAATTAAAGAG
455 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24138172 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24138237 GAAAG-G-TTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24138300 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
24138365 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
*
24138430 TGCATTTTCGTGTTATCTTTTAATTGTGTTTTTGTATATATATT-AA-ATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24138493 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24138558 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
* *
24138623 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATACAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24138684 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24138749 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24138814 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
24138879 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24138944 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24139009 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24139074 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
*
24139139 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCTTAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24139200 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24139265 GAAAGTGATTATGGTTATAAAAA-GAGAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
66 GAAAGTGATTATGGTTATAAAAAGGA-AAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
*
24139329 AGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAA
130 AGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAA
* *
24139394 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCAGTTTCTAGGTAAGTTCATATGGAAGTTA
195 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTA
24139459 CTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGAT
260 CTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGAT
24139524 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
325 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
24139589 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
390 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
24139654 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTG--TAAAATTAAAGAG
455 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
*
24139714 TTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24139779 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24139844 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGACCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
*
24139909 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATGGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
*
24139974 TGCATTTTCGTGTTATATTTTAAATGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
*
24140039 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGCGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24140104 TTCATGACATTGAACT-GATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
391 TTCATGACATTGAA-TGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
* **
24140168 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTACTAAGTG-ATAAAATTAAAGAG
455 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24140229 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24140294 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24140359 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGACCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
* *
24140424 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCAGTTTCTAGGTAAGTTCATATGGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24140489 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATATTAGATATATATATAATTGTA
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTG--TATATATATTA-A-ATATATATAATTGTA
24140554 GATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAA
322 GATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAA
*
24140619 GAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGTATATGATGATGT
387 GAGATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGT
*
24140684 TGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACT-ATGTGTG-TTATAAATTAAAGA
452 TGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATA-AAATTAAAGA
24140747 G
516 G
24140748 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24140813 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
24140878 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
*
24140943 CTATGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24141008 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24141073 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24141138 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
*
24141203 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24141264 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24141329 GAAAGTGATTATGGTTATAAAAAGG-AAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
24141393 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
* *
24141458 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCC-TGTTTCTAGGTAAGTTCATATGGAAGTAA
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCAT-TTTCTAGGTAAGTTCATATAGAAGTTA
24141522 CTGCATTTTCGTGTTATATTTTAATTGT-TTTTTGTATATATATTAAATATATATAATTGTAGAT
260 CTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGAT
24141586 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
325 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
24141651 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
390 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
*
24141716 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTACTGTGTGCATAAAATTAAAGAG
455 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24141778 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
* *
24141843 GAAAGTGAGTATGGTAATAAAAA-GAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
24141907 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
24141972 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
*
24142037 TGCATTTTCGTGTTATATTTTAATTGTGTTTTATATATATATATT-AA-ATATATAATTGTAGAT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTT-TGTATATATATTAAATATATATAATTGTAGAT
24142100 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
325 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
24142165 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
390 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
24142230 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
455 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24142292 TTTGAAATGATACGAAAT-GGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24142356 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24142421 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATAATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
* *
24142486 CAGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATGGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24142551 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
*
24142616 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGCGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
*
24142681 TTCATGACATTGAATTGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
* *
24142746 AATTTAAAATGTATAGAGAATTGGTATTCAAAATAACTAATGTGTGTATAAAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
24142807 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
24142872 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
*
24142937 GATCCAGCACAAATTGTGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
* *
24143002 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTTGGTAAGTTCATATGGAAGTTAC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
24143067 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
* *
24143132 TAATGGCATTTTATATAAAATGGATCAACTCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
24143197 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
* *
24143262 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATACAATTAAAGAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
* *
24143323 TTTGAAATGATACGAAATTGGTGAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAAAAT
1 TTTGAAATGATACGAAATGGGT-AAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAAT
* * *
24143388 GGAAAGTAATTATCGTTATAAAATGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
65 GGAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
*
24143453 AGATCCAGCACAAATTATGGATTCTCGACTGCTCGAGTGAGCAGTATCGGATCATTATATAGCAA
130 AGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAA
* * * * * *
24143518 -CTGTGATGATTAGTCGCTCAAACTTTCTAGTTGCCAATTTCTAGGTAAGTTCAAATGGAAGTTT
195 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTA
* * * * *
24143582 CTGCATTTTCATATTATATTTTAATTGTGTTTTTGTATATACATTAAATATATATGATTTTAGAT
260 CTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGAT
*
24143647 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGGAATACTTGATAAATATGAAGAG
325 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
* * * *
24143712 GTTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGAGAGCATGCATATGATGATGTTGC
390 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
* *
24143777 AAATTTAAAATGTATAGAGAATTGCTT-TTC-AAATAAACTAATGTGTGTATACAATTAAAGAG
455 AAATTTAAAATGTATAGAGAATTG-TTATTCAAAAT-AACTAATGTGTGCATAAAATTAAAGAG
*
24143839 TTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
* *
24143904 GAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTATTCGATGCTTG
66 GAAAGTGATTATGGTTATAAAAAGG-AAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
*
24143969 AGATCCAGCAC---------A------A-A--T----T---C---A---GATCATTATATAGTAA
130 AGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAA
* * *
24144003 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCGTATGGGAGTTA
195 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTA
*
24144068 TTGCATTTTCGTGTTATATTTTAATTGTG-TTTTGTATATATATTAAATATATATAATTGTAGAT
260 CTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGAT
* * *
24144132 TTAATGGCTTTTTATATAAAATGGATCAACTCGTAAAATAAGAACTACCTGATAAATATGAAGAG
325 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
* ** * * *
24144197 ATTCAAGACACGGAATGGATGTGGGAATGGTATGTTGTTGGATAGAATGTATATGATAATGTTTC
390 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
* * *
24144262 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATACACTTAAAGAG
455 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
*
24144324 TTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAA-AAGT
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAA-T
* *
24144388 GGAAAGTAATTATCGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGA-TTAGTTCGATGGTT
65 GGAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTA-TTCGATGGTT
* *
24144452 GAGATCCTGCACAAATTATGGATTCTCGACAGCTCAAGTGAGCAGTATCGGATCATTATATAGCA
129 GAGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCA
* * *
24144517 ATCTGTGATGATTAGTCGCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTCCATATGGAAGTT
194 ATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTT
* * * *
24144582 TCTGCATTTTCGTATTTTATTTCAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGA
259 ACTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGA
24144647 TTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGA
324 TTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGA
* *
24144712 GATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGCATATGATGATGTTG
389 GATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTG
* * * * * *
24144777 AAAATTTAAAATGTATAGAGAATTGCTACTCAAAAAAACTAATGTGTGTATACAATTAAAGAG
454 CAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
* *
24144840 TTTGAAATGATACAAAATCGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
* *
24144905 GAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATTTATTCGATGCTTG
66 GAAAGTGATTATGGTTATAAAAAGG-AAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
24144970 AGATCCAGCAC---------A------A-A--T----T---C---A---GATCATTATATAGCAA
130 AGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAA
* *
24145004 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATGGGAGTTA
195 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTA
* * *
24145069 TTGCATTTTCGTGTTCTATTTTAATTGTGTTTTTGTATATATATTAAATATATGTAATTGTAGAT
260 CTGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGAT
* * *
24145134 TTAATGGC-TTTTATATAAAATGGATCAACTCGTAAAATAAGAACTACCTGATAAATATGAAGAG
325 TTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAG
* * * *
24145198 ATTCATGACACTGAATGGATGTGGGAATGGTATGTTGTTGGATAGAATGTATATAATAATGTTGC
390 ATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGC
* *
24145263 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATACAATTAAAGAG
455 AAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
* * * *
24145325 TTTGAAATGATACGAAATTGGAAAAAGAACCTGTATGAATTTAGCAAATGGTTTAGATAAAAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
* * * * * *
24145390 GAAAGTAATTATCGTTATAAAAAGGAAAAATGGGAATAGTGATTAGAGATTAATTCAATGGTCGA
66 GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
* *
24145455 GATCCAGCACAAATTATGGATTCTTGACAGCTCGAGTGAGCAGTATCGGATCAGTATATAGCAAT
131 GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
* * * * *
24145520 TTGTGATGATTAGTCGCTGAAACTTTCTAGTTGTCATTTTCTAGGTAAGTTCATATGGAAGTTTC
196 CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
* *
24145585 TGCATTTTCGTATTTTATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
261 TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
24145650 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
326 TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
* *
24145715 TTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATGCATATGATGATGTTGCA
391 TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
* * * * *
24145780 AATTTAAAATGTATAGAGAATTGCTATTCAAAAAAACTAATGTGTGTATACAATTAAAAAG
456 AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
* * *
24145841 TTTGAAATGATCCGAAATCGGTAAAAGAACCTGTATGAAGTTAACAAATGGTTTAGATAAGAATG
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
* * *
24145906 GAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCCTGATTAGAGATTTATTCGATGCTTG
66 GAAAGTGATTATGGTTATAAAAAGG-AAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTG
24145971 AGATCCAGCAC---------A------A-A--T----T---C---A---GATCATTATATAGCAA
130 AGATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAA
* * *
24146005 TCTGTGATGATTAGTCCCCGAAACTTTCTAGTTTCCATTTTCTAGGTAAGTTCATATGGAAGTTA
195 TCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTA
* *
24146070 TTGCATTTTCGTGTTATATTTTAATTGTGTTTTTTGTATATATATTAAATATATATAATTTTAGA
260 CTGCATTTTCGTGTTATATTTTAATTGTG-TTTTTGTATATATATTAAATATATATAATTGTAGA
* *
24146135 TTTAATGGCTTTTTATATAAAATGGATCAACTCGTAAAATAAGAAATACTTGATAAATATTAAGA
324 TTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGA
* * *
24146200 GATTCATGACACTGAATGGATGTGGGAATGGTATGTTGTTGGATAGAATGTATATGATAATGTTG
389 GATTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTG
* *
24146265 CAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTATACAATTAAAGAG
454 CAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
* * * *
24146328 TTTGAAATGATACGAAATTGGAAAAAGAACCTGTATAAATTTAGCAAAT
1 TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAAT
24146377 AGGGTAATTG
Statistics
Matches: 12687, Mismatches: 521, Indels: 565
0.92 0.04 0.04
Matches are distributed among these distances:
483 3 0.00
484 93 0.01
485 551 0.04
486 332 0.03
487 260 0.02
488 1 0.00
489 2 0.00
491 1 0.00
492 2 0.00
493 2 0.00
494 1 0.00
495 2 0.00
498 1 0.00
499 4 0.00
500 2 0.00
501 3 0.00
502 4 0.00
506 2 0.00
507 1 0.00
508 2 0.00
509 2 0.00
512 274 0.02
513 84 0.01
514 1891 0.15
515 1942 0.15
516 5509 0.43
517 518 0.04
518 16 0.00
519 486 0.04
521 2 0.00
523 1 0.00
525 3 0.00
526 4 0.00
527 4 0.00
528 1 0.00
529 4 0.00
530 4 0.00
531 3 0.00
532 8 0.00
533 21 0.00
534 4 0.00
536 3 0.00
537 6 0.00
538 7 0.00
539 10 0.00
540 12 0.00
541 9 0.00
542 9 0.00
543 6 0.00
544 6 0.00
546 2 0.00
549 7 0.00
550 3 0.00
551 4 0.00
552 4 0.00
553 2 0.00
554 2 0.00
555 9 0.00
556 3 0.00
557 11 0.00
558 16 0.00
559 15 0.00
560 10 0.00
561 3 0.00
562 4 0.00
563 6 0.00
564 9 0.00
565 3 0.00
566 1 0.00
567 4 0.00
568 8 0.00
569 3 0.00
570 13 0.00
571 14 0.00
572 12 0.00
573 13 0.00
574 13 0.00
575 3 0.00
576 8 0.00
577 4 0.00
578 1 0.00
579 3 0.00
580 8 0.00
581 7 0.00
582 4 0.00
583 3 0.00
584 10 0.00
585 15 0.00
586 18 0.00
587 11 0.00
588 3 0.00
589 9 0.00
590 2 0.00
591 2 0.00
592 3 0.00
593 4 0.00
594 3 0.00
595 7 0.00
598 2 0.00
600 6 0.00
601 6 0.00
602 9 0.00
603 9 0.00
604 12 0.00
605 10 0.00
606 7 0.00
607 6 0.00
608 3 0.00
610 10 0.00
611 19 0.00
612 6 0.00
613 4 0.00
614 4 0.00
615 1 0.00
616 5 0.00
617 1 0.00
618 4 0.00
619 3 0.00
621 1 0.00
623 2 0.00
625 2 0.00
626 5 0.00
627 2 0.00
628 108 0.01
ACGTcount: A:0.36, C:0.09, G:0.20, T:0.35
Consensus pattern (516 bp):
TTTGAAATGATACGAAATGGGTAAAAGAACCTGTATGAATTTAACAAATGGTTTAGATAAGAATG
GAAAGTGATTATGGTTATAAAAAGGAAAAATGGGAATCGTGATTAGAGATTTATTCGATGGTTGA
GATCCAGCACAAATTATGGATTCTCGACAGCTCGAGTGAGCAGTATCGGATCATTATATAGCAAT
CTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAAGTTCATATAGAAGTTAC
TGCATTTTCGTGTTATATTTTAATTGTGTTTTTGTATATATATTAAATATATATAATTGTAGATT
TAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACTTGATAAATATGAAGAGA
TTCATGACATTGAATGGATGTGGGAATGGTATGTTGTTGGATAGCATGTATATGATGATGTTGCA
AATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATAAAATTAAAGAG
Found at i:24134015 original size:124 final size:127
Alignment explanation
Indices: 24133794--24134034 Score: 355
Period size: 124 Copynumber: 1.9 Consensus size: 127
24133784 ACTACTTGAT
* * ** *
24133794 AAATATGAAGAGATTCATGACATTGAATGGATGTGGGAATCGTATGTTGTTGGATAACATGTATA
1 AAATATGAAGAGATTCATGACAATGAATGGATATCAGAATAGTATGTTGTTGGATAACATG-ATA
*
24133859 TGATGATGTTGCAAATTTAATATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATA
65 TGATGATGTTGCAAATTTAACATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATA
*
24133922 AAATATAGAAGAGATTCATGA-AATGAATGGATATCAGAATAGTATG-TGTTGGATAGCATG-TA
1 AAATAT-GAAGAGATTCATGACAATGAATGGATATCAGAATAGTATGTTGTTGGATAACATGATA
* *
24133984 T-ATGATGTTGCAAATTTAACCTGTATGGAGAATTGTTATTCAAAATAACTA
65 TGATGATGTTGCAAATTTAACATGTATAGAGAATTGTTATTCAAAATAACTA
24134035 TGTTGTATAA
Statistics
Matches: 103, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
124 47 0.46
125 3 0.03
127 13 0.13
128 26 0.25
129 14 0.14
ACGTcount: A:0.38, C:0.07, G:0.21, T:0.34
Consensus pattern (127 bp):
AAATATGAAGAGATTCATGACAATGAATGGATATCAGAATAGTATGTTGTTGGATAACATGATAT
GATGATGTTGCAAATTTAACATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGCATA
Found at i:24144411 original size:485 final size:486
Alignment explanation
Indices: 24143502--24146376 Score: 4208
Period size: 485 Copynumber: 5.8 Consensus size: 486
24143492 AGCAGTATCG
* * *
24143502 GATCATTATATAGCAA-CTGTGATGATTAGTCGCTCAAACTTTCTAGTTGCCAATTTCTAGGTAA
1 GATCATTATATAGCAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
* * *
24143566 GTTCAAATGGAAGTTTCTGCATTTTCATATTATATTTTAATTGTGTTTTTGTATATACATTAAAT
66 GTTCATATGGAAGTTTCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATATTAAAT
* * *
24143631 ATATATGATTTTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGGAATACT
131 ATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACT
* * * *
24143696 TGATAAATATGAAGAGGTTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGAGAGCATG
196 TGATAAATATGAAGAGATTCATGACACTGAATGGATGTGAGAATGGTATGTTGTTGGATAGAATG
*
24143761 CATATGATGATGTTGCAAATTTAAAATGTATAGAGAATTGCTT-TTC-AAATAAACTAATGTGTG
261 CATATGATAATGTTGCAAATTTAAAATGTATAGAGAATTG-TTATTCAAAAT-AACTAATGTGTG
24143824 TATACAATTAAAGAGTTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAATG
324 TATACAATTAAAGAGTTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAATG
24143889 GTTTAGATAAGAATGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGA
389 GTTTAGATAAGAATGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGA
24143954 TTTATTCGATGCTTGAGATCCAGCACAAATTCA
454 TTTATTCGATGCTTGAGATCCAGCACAAATTCA
*
24143987 GATCATTATATAGTAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
1 GATCATTATATAGCAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
* * *
24144052 GTTCGTATGGGAGTTAT-TGCATTTTCGTGTTATATTTTAATTGTG-TTTTGTATATATATTAAA
66 GTTCATATGGAAGTT-TCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATATTAAA
* *
24144115 TATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAACTCGTAAAATAAGAACTAC
130 TATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATAC
* * * *
24144180 CTGATAAATATGAAGAGATTCAAGACACGGAATGGATGTGGGAATGGTATGTTGTTGGATAGAAT
195 TTGATAAATATGAAGAGATTCATGACACTGAATGGATGTGAGAATGGTATGTTGTTGGATAGAAT
* *
24144245 GTATATGATAATGTTTCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGT
260 GCATATGATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGT
* *
24144310 ATACACTTAAAGAGTTTGAAATGATACGAAATTGGTAAAAGAACCTGTATGAATTTAACAAATGG
325 ATACAATTAAAGAGTTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAATGG
** *
24144375 TTTAGATAA-AAGTGGAAAGTAATTATCGTTATAAAAAGG-AAAAATGGGAATCGTGATTAGAGA
390 TTTAGATAAGAA-TGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGA
* *
24144438 -TTAGTTCGATGGTTGAGATCCTGCACAAATTATGGATTCTCGACAGCTCAAGTGAGCAGTATCG
454 TTTA-TTCGATGCTTGAGA---T-C-C---------A-----G-CA---C-A---A--A-T-TCA
*
24144502 GATCATTATATAGCAATCTGTGATGATTAGTCGCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
1 GATCATTATATAGCAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
* * *
24144567 GTCCATATGGAAGTTTCTGCATTTTCGTATTTTATTTCAATTGTGTTTTTGTATATATATTAAAT
66 GTTCATATGGAAGTTTCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATATTAAAT
24144632 ATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACT
131 ATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACT
* *
24144697 TGATAAATATGAAGAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGATAGCATG
196 TGATAAATATGAAGAGATTCATGACACTGAATGGATGTGAGAATGGTATGTTGTTGGATAGAATG
* * * * *
24144762 CATATGATGATGTTGAAAATTTAAAATGTATAGAGAATTGCTACTCAAAAAAACTAATGTGTGTA
261 CATATGATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTA
*
24144827 TACAATTAAAGAGTTTGAAATGATACAAAATCGGTAAAAGAACCTGTATGAATTTAACAAATGGT
326 TACAATTAAAGAGTTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAATGGT
24144892 TTAGATAAGAATGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATT
391 TTAGATAAGAATGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATT
24144957 TATTCGATGCTTGAGATCCAGCACAAATTCA
456 TATTCGATGCTTGAGATCCAGCACAAATTCA
24144988 GATCATTATATAGCAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
1 GATCATTATATAGCAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
* * *
24145053 GTTCATATGGGAGTTAT-TGCATTTTCGTGTTCTATTTTAATTGTGTTTTTGTATATATATTAAA
66 GTTCATATGGAAGTT-TCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATATTAAA
* * *
24145117 TATATGTAATTGTAGATTTAATGGC-TTTTATATAAAATGGATCAACTCGTAAAATAAGAACTAC
130 TATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATAC
* *
24145181 CTGATAAATATGAAGAGATTCATGACACTGAATGGATGTGGGAATGGTATGTTGTTGGATAGAAT
195 TTGATAAATATGAAGAGATTCATGACACTGAATGGATGTGAGAATGGTATGTTGTTGGATAGAAT
* *
24145246 GTATATAATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGT
260 GCATATGATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGT
* * *
24145311 ATACAATTAAAGAGTTTGAAATGATACGAAATTGGAAAAAGAACCTGTATGAATTTAGCAAATGG
325 ATACAATTAAAGAGTTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAATGG
* ** * *
24145376 TTTAGATAAAAATGGAAAGTAATTATCGTTATAAAAAGG-AAAAATGGGAATAGTGATTAGAGAT
390 TTTAGATAAGAATGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGAT
* * * *
24145440 TAATTCAATGGTCGAGATCCAGCACAAATTATGGATTCTTGACAGCTCGAGTGAGCA
455 TTATTCGATGCTTGAGATCCAGCAC---------A------A-A--T----T---CA
* * *
24145497 GTATCGGATCAGTATATAGCAATTTGTGATGATTAGTCGCTGAAACTTTCTAGTTGTCATTTTCT
1 G-ATC--AT---TATATAGCAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCT
*
24145562 AGGTAAGTTCATATGGAAGTTTCTGCATTTTCGTATTTTATTTTAATTGTGTTTTTGTATATATA
60 AGGTAAGTTCATATGGAAGTTTCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATA
24145627 TTAAATATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGA
125 TTAAATATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGA
*
24145692 AATACTTGATAAATATGAAGAGATTCATGACATTGAATGGATGTGAGAATGGTATGTTGTTGGAT
190 AATACTTGATAAATATGAAGAGATTCATGACACTGAATGGATGTGAGAATGGTATGTTGTTGGAT
* * * *
24145757 AGCATGCATATGATGATGTTGCAAATTTAAAATGTATAGAGAATTGCTATTCAAAAAAACTAATG
255 AGAATGCATATGATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATG
* * *
24145822 TGTGTATACAATTAAAAAGTTTGAAATGATCCGAAATCGGTAAAAGAACCTGTATGAAGTTAACA
320 TGTGTATACAATTAAAGAGTTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACA
*
24145887 AATGGTTTAGATAAGAATGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCCTGATTA
385 AATGGTTTAGATAAGAATGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTA
24145952 GAGATTTATTCGATGCTTGAGATCCAGCACAAATTCA
450 GAGATTTATTCGATGCTTGAGATCCAGCACAAATTCA
* *
24145989 GATCATTATATAGCAATCTGTGATGATTAGTCCCCGAAACTTTCTAGTTTCCATTTTCTAGGTAA
1 GATCATTATATAGCAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
*
24146054 GTTCATATGGAAGTTAT-TGCATTTTCGTGTTATATTTTAATTGTGTTTTTTGTATATATATTAA
66 GTTCATATGGAAGTT-TCTGCATTTTCGTATTATATTTTAATTGTG-TTTTTGTATATATATTAA
* *
24146118 ATATATATAATTTTAGATTTAATGGCTTTTTATATAAAATGGATCAACTCGTAAAATAAGAAATA
129 ATATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATA
* *
24146183 CTTGATAAATATTAAGAGATTCATGACACTGAATGGATGTGGGAATGGTATGTTGTTGGATAGAA
194 CTTGATAAATATGAAGAGATTCATGACACTGAATGGATGTGAGAATGGTATGTTGTTGGATAGAA
*
24146248 TGTATATGATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTG
259 TGCATATGATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTG
* * * *
24146313 TATACAATTAAAGAGTTTGAAATGATACGAAATTGGAAAAAGAACCTGTATAAATTTAGCAAAT
324 TATACAATTAAAGAGTTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAAT
24146377 AGGGTAATTG
Statistics
Matches: 2156, Mismatches: 155, Indels: 156
0.87 0.06 0.06
Matches are distributed among these distances:
483 3 0.00
484 86 0.04
485 551 0.26
486 329 0.15
487 265 0.12
488 2 0.00
489 3 0.00
490 1 0.00
491 3 0.00
492 3 0.00
493 2 0.00
494 1 0.00
495 1 0.00
497 2 0.00
498 2 0.00
499 2 0.00
500 1 0.00
501 1 0.00
502 2 0.00
503 2 0.00
504 2 0.00
506 1 0.00
507 1 0.00
508 2 0.00
509 3 0.00
510 3 0.00
511 1 0.00
512 3 0.00
513 2 0.00
514 4 0.00
515 241 0.11
516 545 0.25
517 83 0.04
518 3 0.00
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.36
Consensus pattern (486 bp):
GATCATTATATAGCAATCTGTGATGATTAGTCCCTGAAACTTTCTAGTTGCCATTTTCTAGGTAA
GTTCATATGGAAGTTTCTGCATTTTCGTATTATATTTTAATTGTGTTTTTGTATATATATTAAAT
ATATATAATTGTAGATTTAATGGCTTTTTATATAAAATGGATCAAATCGTAAAATAAGAAATACT
TGATAAATATGAAGAGATTCATGACACTGAATGGATGTGAGAATGGTATGTTGTTGGATAGAATG
CATATGATAATGTTGCAAATTTAAAATGTATAGAGAATTGTTATTCAAAATAACTAATGTGTGTA
TACAATTAAAGAGTTTGAAATGATACGAAATCGGTAAAAGAACCTGTATGAATTTAACAAATGGT
TTAGATAAGAATGGAAAGTGGTTATGGTTATAAAAAGGAAAAAATGGGAATCGTGATTAGAGATT
TATTCGATGCTTGAGATCCAGCACAAATTCA
Found at i:24148160 original size:47 final size:47
Alignment explanation
Indices: 24148091--24148184 Score: 152
Period size: 47 Copynumber: 2.0 Consensus size: 47
24148081 ACAGATGAGA
*
24148091 AAATATATGAACAAAACTGGGAAGAATTCTCCTATGCTAAATAAGGC
1 AAATATATAAACAAAACTGGGAAGAATTCTCCTATGCTAAATAAGGC
* * *
24148138 AAATATATAAATAGAACTGGGAAGAATTCTCTTATGCTAAATAAGGC
1 AAATATATAAACAAAACTGGGAAGAATTCTCCTATGCTAAATAAGGC
24148185 TTCTTACCCA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 43 1.00
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.26
Consensus pattern (47 bp):
AAATATATAAACAAAACTGGGAAGAATTCTCCTATGCTAAATAAGGC
Found at i:24153779 original size:22 final size:22
Alignment explanation
Indices: 24153719--24153776 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 22
24153709 AATCTTCAAG
24153719 GATATGCAATCTT---AGATAT
1 GATATGCAATCTTAGAAGATAT
24153738 GATATGCAATCTTAGAAGATAT
1 GATATGCAATCTTAGAAGATAT
* *
24153760 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
24153777 GATTTAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
19 13 0.39
22 8 0.24
23 12 0.36
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (22 bp):
GATATGCAATCTTAGAAGATAT
Found at i:24154021 original size:23 final size:23
Alignment explanation
Indices: 24153980--24154024 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
24153970 TCTTATTTTG
*
24153980 TTGATTTGTTTATAATTTATTTA
1 TTGATTTGTATATAATTTATTTA
**
24154003 TTGATTTGTATATTGTTTATTT
1 TTGATTTGTATATAATTTATTT
24154025 CAAATCTCTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.11, T:0.67
Consensus pattern (23 bp):
TTGATTTGTATATAATTTATTTA
Found at i:24161150 original size:44 final size:44
Alignment explanation
Indices: 24161101--24161384 Score: 358
Period size: 44 Copynumber: 6.7 Consensus size: 44
24161091 AGTAGTCTTG
**
24161101 TCTCCCTGGAAAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
24161145 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
* * * *
24161189 CCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
*
24161233 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTTCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTA
*
24161277 TCTCACTGGTCAGCAGTGG-A-A---T--AG---GTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
*
24161311 TCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTA
1 TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
* * *
24161355 TCTTCTTGAGT-AGCAGTGGAGTAGGTTGAA
1 TCTCCCTG-GTCAGCAGTGGAATAGGTTGAA
24161385 AATTACAGAT
Statistics
Matches: 208, Mismatches: 19, Indels: 26
0.82 0.08 0.10
Matches are distributed among these distances:
34 23 0.11
35 3 0.01
36 1 0.00
37 2 0.01
39 2 0.01
41 2 0.01
42 1 0.00
43 2 0.01
44 170 0.82
45 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.30
Consensus pattern (44 bp):
TCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
Found at i:24161401 original size:122 final size:122
Alignment explanation
Indices: 24161179--24161402 Score: 328
Period size: 122 Copynumber: 1.8 Consensus size: 122
24161169 GTTGAAGATT
*
24161179 GTGAATCCTACCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAGTCCTATCTCCCTGGTC
1 GTGAATCCTACCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTC
* *
24161244 AGCAGTGGAATAGGTTGAAGATTGTAAGTTCTATCTCACTGGTCAGCAGTGGAATAG
66 AGCAGTGGAATAGGTTGAAGAATGTAAGATCTATCTCACTGGTCAGCAGTGGAATAG
* * * *
24161301 GTGAATCCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTTCTTGAGT
1 GTGAATCCTACCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTG-GT
*
24161366 -AGCAGTGGAGTAGGTTGAA-AAT-TACAGATCTTATCTC
65 CAGCAGTGGAATAGGTTGAAGAATGTA-AGATC-TATCTC
24161403 CCTAAGCAGT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
120 2 0.02
121 6 0.07
122 81 0.89
123 2 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (122 bp):
GTGAATCCTACCTCCCTAGTCAGTAGTGGAATAGGTTGAAGATTGTGAATCCTATCTCCCTGGTC
AGCAGTGGAATAGGTTGAAGAATGTAAGATCTATCTCACTGGTCAGCAGTGGAATAG
Found at i:24161607 original size:50 final size:50
Alignment explanation
Indices: 24161553--24161820 Score: 182
Period size: 50 Copynumber: 5.4 Consensus size: 50
24161543 TTGGCATTAC
* * *
24161553 AGTGGAATAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCTGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCTGTGT
* * ** * *
24161603 AGTGGAACAGATTGAAGCTACGACGGCGAATCTTGTTTCTCC-AACAT-TGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTC-CCTAGC-TGTGT
** * * * *
24161653 AGTTAAATAGATTAAAGCCACAACGGCGAATCTTACTTCCTTAGCGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCTGTGT
* * * ** * ** * *
24161703 AGTGTAACAGATTTAAGCTATGACGGTGAATCTTGTTTCCCTACCAT-TGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGC-TGTGT
** * * * * * *
24161753 AGTTAAATAGATTGAAGCCACAACGACAAATCTTACTTCCCTGGCAGTCT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCTGTGT
*
24161803 AGTGGAACAGATTAAAGC
1 AGTGGAACAGATTGAAGC
24161821 TAAAGGTAGC
Statistics
Matches: 156, Mismatches: 56, Indels: 12
0.70 0.25 0.05
Matches are distributed among these distances:
49 1 0.01
50 152 0.97
51 3 0.02
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCTGTGT
Found at i:24161676 original size:100 final size:99
Alignment explanation
Indices: 24161558--24161855 Score: 375
Period size: 100 Copynumber: 3.0 Consensus size: 99
24161548 ATTACAGTGG
* *
24161558 AATAGATTGAAGCCACAACAGCGAATCTTACTTCCCTGGCTGTGTAGTGGAACAGATTGAAGCTA
1 AATAGATTGAAGCCACAAC-GCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTA
24161623 CGACGGCGAATCTTGTTTCTCC-AACATTGCAGTTA
65 CGACGGCGAATCTTGTTTC-CCTAACATTGCAGTTA
* * * * * *
24161658 AATAGATTAAAGCCACAACGGCGAATCTTACTTCCTTAGCGGTGTAGTGTAACAGATTTAAGCTA
1 AATAGATTGAAGCCACAAC-GCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTA
* * *
24161723 TGACGGTGAATCTTGTTTCCCTACCATTGCAGTTA
65 CGACGGCGAATCTTGTTTCCCTAACATTGCAGTTA
* *
24161758 AATAGATTGAAGCCACAACGACAAATCTTACTTCCCTGGCAGTCTAGTGGAACAGATTAAAGCTA
1 AATAGATTGAAGCCACAACG-CGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTA
* * * *
24161823 -AAGGTAGCGAATCTTGTTTCCCTAGCGTTGCAG
65 CGACG--GCGAATCTTGTTTCCCTAACATTGCAG
24161856 CGGAGCAAAA
Statistics
Matches: 171, Mismatches: 23, Indels: 7
0.85 0.11 0.03
Matches are distributed among these distances:
99 5 0.03
100 142 0.83
101 24 0.14
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (99 bp):
AATAGATTGAAGCCACAACGCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTAC
GACGGCGAATCTTGTTTCCCTAACATTGCAGTTA
Found at i:24167727 original size:3 final size:3
Alignment explanation
Indices: 24167719--24167763 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
24167709 GTTTAAAGGG
24167719 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
24167764 AGGGATTGTT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:24170460 original size:37 final size:36
Alignment explanation
Indices: 24170397--24170470 Score: 105
Period size: 36 Copynumber: 2.0 Consensus size: 36
24170387 AACTTTGTTT
*
24170397 ATTTTGTGCTTTTACATGTAAAATACAAGCGG-AGGA
1 ATTTTGTGCTATTACATGTAAAATACAAG-GGAAGGA
*
24170433 ATTTTGTGCTATTATATGGTAAAATACAAGGGAAGGA
1 ATTTTGTGCTATTACAT-GTAAAATACAAGGGAAGGA
24170470 A
1 A
24170471 AAGGGATTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
36 17 0.50
37 17 0.50
ACGTcount: A:0.36, C:0.08, G:0.23, T:0.32
Consensus pattern (36 bp):
ATTTTGTGCTATTACATGTAAAATACAAGGGAAGGA
Found at i:24173541 original size:20 final size:19
Alignment explanation
Indices: 24173512--24173558 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 19
24173502 ATTAACATTA
*
24173512 TTAAACTAGATTAATTTAAG
1 TTAAATTAGATTAA-TTAAG
24173532 TTAAATTAGATTAATTAAG
1 TTAAATTAGATTAATTAAG
*
24173551 TTCAATTA
1 TTAAATTA
24173559 AACTATAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
19 12 0.48
20 13 0.52
ACGTcount: A:0.45, C:0.04, G:0.09, T:0.43
Consensus pattern (19 bp):
TTAAATTAGATTAATTAAG
Found at i:24177097 original size:16 final size:16
Alignment explanation
Indices: 24177076--24177106 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
24177066 CCAAACATGT
24177076 CAATAGCTAGCCATTC
1 CAATAGCTAGCCATTC
*
24177092 CAATAGCTAGTCATT
1 CAATAGCTAGCCATT
24177107 ATGAAATACT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.29
Consensus pattern (16 bp):
CAATAGCTAGCCATTC
Found at i:24187204 original size:19 final size:19
Alignment explanation
Indices: 24187158--24187205 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
24187148 TGTTGATGTG
* *
24187158 CCAGGATGCACTTCGTGTT
1 CCAGGATGCGCTTCGTGCT
* * *
24187177 CTAGTATGCGCTTTGTGCT
1 CCAGGATGCGCTTCGTGCT
24187196 CCAGGATGCG
1 CCAGGATGCG
24187206 TTTTTGTATG
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.25, G:0.29, T:0.31
Consensus pattern (19 bp):
CCAGGATGCGCTTCGTGCT
Found at i:24189556 original size:27 final size:27
Alignment explanation
Indices: 24189526--24189674 Score: 142
Period size: 27 Copynumber: 5.6 Consensus size: 27
24189516 GAATTTTCCG
*
24189526 CAAAGGC-ATCTCTTTTAAAGTTCACCA
1 CAAAGGCTAT-TCTTTTAAAGTTCGCCA
* * **
24189553 CAAAGACTATTCTTTCAGAA--TCATCA
1 CAAAGGCTATTCTTTTA-AAGTTCGCCA
* * * *
24189579 CAATGGTTATTCTTTTATAGTTTGCCA
1 CAAAGGCTATTCTTTTAAAGTTCGCCA
* * *
24189606 CAAAGACTATTCTTTTAGAGTTTGCCA
1 CAAAGGCTATTCTTTTAAAGTTCGCCA
*
24189633 CAAAGGCTATTCTTTCAAAGTTCGCCA
1 CAAAGGCTATTCTTTTAAAGTTCGCCA
24189660 CAAAGGCTATTCTTT
1 CAAAGGCTATTCTTT
24189675 AGCTATCATG
Statistics
Matches: 99, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
25 1 0.01
26 18 0.18
27 76 0.77
28 4 0.04
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (27 bp):
CAAAGGCTATTCTTTTAAAGTTCGCCA
Found at i:24189571 original size:54 final size:53
Alignment explanation
Indices: 24189512--24189674 Score: 175
Period size: 54 Copynumber: 3.0 Consensus size: 53
24189502 AGGTGATCTA
* *
24189512 TTCAGAATTTTCCGCAAAGGCATCTCTTTTAAAGTTCACCACAAAGACTATTCT
1 TTCAGAATTTTCCACAAAGGCAT-TCTTTTAAAGTTCGCCACAAAGACTATTCT
** * * * *
24189566 TTCAGAATCAT-CACAATGGTTATTCTTTTATAGTTTGCCACAAAGACTATTCT
1 TTCAGAATTTTCCACAAAGG-CATTCTTTTAAAGTTCGCCACAAAGACTATTCT
* * * * *
24189619 TTTAGAGTTTGCCACAAAGGCTATTCTTTCAAAGTTCGCCACAAAGGCTATTCT
1 TTCAGAATTTTCCACAAAGGC-ATTCTTTTAAAGTTCGCCACAAAGACTATTCT
24189673 TT
1 TT
24189675 AGCTATCATG
Statistics
Matches: 87, Mismatches: 19, Indels: 6
0.78 0.17 0.05
Matches are distributed among these distances:
53 39 0.45
54 48 0.55
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.36
Consensus pattern (53 bp):
TTCAGAATTTTCCACAAAGGCATTCTTTTAAAGTTCGCCACAAAGACTATTCT
Found at i:24193924 original size:50 final size:50
Alignment explanation
Indices: 24193870--24194049 Score: 207
Period size: 50 Copynumber: 3.5 Consensus size: 50
24193860 CAATGTCATA
* **
24193870 TCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
** *
24193920 TCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
* ** *
24193970 TCCCAGACATGGTCTTACGTGGGACCTCTCATAACCTCAATAATGCCAATGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GGTGCCAACGCCATG
*
24194026 TCCCAGACATGGTCTTTCATGGGA
1 TCCCAGACATGGTCTTACATGGGA
24194050 TCTCATTCCC
Statistics
Matches: 111, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
50 75 0.68
53 2 0.02
56 34 0.31
ACGTcount: A:0.22, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATG
Found at i:24201593 original size:50 final size:50
Alignment explanation
Indices: 24201515--24201709 Score: 237
Period size: 50 Copynumber: 3.9 Consensus size: 50
24201505 GATAATAACA
* * ** * ** * *
24201515 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGAGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
* *
24201565 TGCCCATGCCATGTCCTAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
*
24201615 TGCCAATGCCACGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
** * * *
24201665 TGCCAACACCATGTCCTAGACATGGTCTTACGTGGAACCTCTCAT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCAT
24201710 AACCTCAATA
Statistics
Matches: 125, Mismatches: 20, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 125 1.00
ACGTcount: A:0.22, C:0.31, G:0.22, T:0.25
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
Found at i:24206437 original size:28 final size:28
Alignment explanation
Indices: 24206405--24206462 Score: 80
Period size: 28 Copynumber: 2.1 Consensus size: 28
24206395 AATAGAACAT
* * *
24206405 AACAATATGGGCTTTAGCCTAATACAGA
1 AACAAGATGGGCCTTAGCCCAATACAGA
*
24206433 AACAAGGTGGGCCTTAGCCCAATACAGA
1 AACAAGATGGGCCTTAGCCCAATACAGA
24206461 AA
1 AA
24206463 TAGTATGCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.40, C:0.21, G:0.21, T:0.19
Consensus pattern (28 bp):
AACAAGATGGGCCTTAGCCCAATACAGA
Found at i:24206959 original size:27 final size:27
Alignment explanation
Indices: 24206901--24207114 Score: 171
Period size: 27 Copynumber: 7.8 Consensus size: 27
24206891 ACCCTATAAG
* * **
24206901 GGTATTTCGATAATTTTTACAAATCGGG
1 GGTATTTTGGTAA-TTTTACAAATCGAA
* *
24206929 GGTATTTTGGTAATTCTACAAATTGAA
1 GGTATTTTGGTAATTTTACAAATCGAA
* *
24206956 GGTATTTCGGTAATTTCACAAATCGAA
1 GGTATTTTGGTAATTTTACAAATCGAA
*** * *
24206983 GGTATTTCAATAATTTTTACATAT-TAA
1 GGTATTTTGGTAA-TTTTACAAATCGAA
*
24207010 GGGTATTTTGGTAATTTTGCAAATC-AA
1 -GGTATTTTGGTAATTTTACAAATCGAA
* * *
24207037 GGGTATTTTAGTAATTTTTGCAAATCGAG
1 -GGTATTTTGGTAA-TTTTACAAATCGAA
* * *
24207066 GGTATTTTAGTAATTTTTCAAATCGAG
1 GGTATTTTGGTAATTTTACAAATCGAA
* *
24207093 GGTATTTTGATAATTTTGCAAA
1 GGTATTTTGGTAATTTTACAAA
24207115 CTAAGGGTAT
Statistics
Matches: 155, Mismatches: 26, Indels: 11
0.81 0.14 0.06
Matches are distributed among these distances:
27 101 0.65
28 53 0.34
29 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
GGTATTTTGGTAATTTTACAAATCGAA
Found at i:24207003 original size:82 final size:82
Alignment explanation
Indices: 24206899--24207178 Score: 314
Period size: 82 Copynumber: 3.4 Consensus size: 82
24206889 TTACCCTATA
* ** * *
24206899 AGGGTATTTCGATAATTTTTACAAATCGGGGGTATTTTGGTAATTCTACAAATTGAA-GGTATTT
1 AGGGTATTTCAATAATTTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAA-T-AAGGGTATTT
* **
24206963 CGGTAA-TTTCACAAATCG
64 CAGTAATTTTTGCAAATCG
* * * *
24206981 AAGGTATTTCAATAATTTTTACATATTAAGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTT
1 AGGGTATTTCAATAATTTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAAT-AAGGGTATTTC
24207046 AGTAATTTTTGCAAATCG
65 AGTAATTTTTGCAAATCG
* * * *
24207064 AGGGTATTTTAGTAATTTTT-CAAATCGAGGGTATTTTGATAATTTTGCAAACTAAGGGTATTTC
1 AGGGTATTTCAATAATTTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAA-TAAGGGTATTTC
*
24207128 AATAATTTTTGCAAATCG
65 AGTAATTTTTGCAAATCG
* * * *
24207146 GGGGTATTTCAGTAATTTTTGCAAATCAGGGGT
1 AGGGTATTTCAATAATTTTTACAAATCAAGGGT
24207179 CTCGGCGACC
Statistics
Matches: 168, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
81 3 0.02
82 127 0.76
83 38 0.23
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.40
Consensus pattern (82 bp):
AGGGTATTTCAATAATTTTTACAAATCAAGGGTATTTTGGTAATTTTGCAAATAAGGGTATTTCA
GTAATTTTTGCAAATCG
Found at i:24207015 original size:55 final size:55
Alignment explanation
Indices: 24206897--24207171 Score: 252
Period size: 55 Copynumber: 5.0 Consensus size: 55
24206887 TTTTACCCTA
* * * *
24206897 TAAGGGTATTTCGATAATTTTTACAAATCGGGGGTATTTTGGTAA-TTCTACAAAT
1 TAAGGGTATTTCGGTAA-TTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAAT
* * * * *
24206952 TGAA-GGTATTTCGGTAATTTCACAAATCGAAGGTATTTCAATAATTTTTACATAT
1 T-AAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAAT
* * * *
24207007 TAAGGGTATTTTGGTAATTTTGCAAATCAAGGGTATTTTAGTAATTTTTGCAAAT
1 TAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAAT
** ** * * *
24207062 CGAGGGTATTTTAGTAATTTTTCAAATCGAGGGTATTTT-GATAA-TTTTGCAAAC
1 TAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAG-TAATTTTTACAAAT
** * * * *
24207116 TAAGGGTATTTCAATAATTTTTGCAAATCGGGGGTATTTCAGTAATTTTTGCAAAT
1 TAAGGGTATTTCGGTAA-TTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAAT
24207172 CAGGGGTCTC
Statistics
Matches: 181, Mismatches: 32, Indels: 13
0.80 0.14 0.06
Matches are distributed among these distances:
54 46 0.25
55 123 0.68
56 12 0.07
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (55 bp):
TAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTAGTAATTTTTACAAAT
Found at i:24207121 original size:27 final size:26
Alignment explanation
Indices: 24207008--24207178 Score: 164
Period size: 28 Copynumber: 6.2 Consensus size: 26
24206998 TTTACATATT
*
24207008 AAGGGTATTTTGGTAATTTTGCAAATC
1 AAGGGTATTTT-ATAATTTTGCAAATC
24207035 AAGGGTATTTTAGTAATTTTTGCAAATC
1 AAGGGTATTTTA-TAA-TTTTGCAAATC
* *
24207063 GAGGGTATTTTAGTAATTTTTCAAATC
1 AAGGGTATTTTA-TAATTTTGCAAATC
*
24207090 GAGGGTATTTTGATAATTTTGCAAA-C
1 AAGGGTATTTT-ATAATTTTGCAAATC
*
24207116 TAAGGGTATTTCAATAATTTTTGCAAATC
1 -AAGGGTATTT-TATAA-TTTTGCAAATC
** *
24207145 GGGGGTATTTCAGTAATTTTTGCAAATC
1 AAGGGTATTTTA-TAA-TTTTGCAAATC
*
24207173 AGGGGT
1 AAGGGT
24207179 CTCGGCGACC
Statistics
Matches: 126, Mismatches: 10, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
26 1 0.01
27 60 0.48
28 64 0.51
29 1 0.01
ACGTcount: A:0.30, C:0.08, G:0.22, T:0.40
Consensus pattern (26 bp):
AAGGGTATTTTATAATTTTGCAAATC
Found at i:24209169 original size:20 final size:21
Alignment explanation
Indices: 24209143--24209202 Score: 77
Period size: 20 Copynumber: 2.9 Consensus size: 21
24209133 CTCATACAAG
24209143 ATTGCACTTCGGTGCCTCTAT
1 ATTGCACTTCGGTGCCTCTAT
* * * *
24209164 -TTGCACTTTGATGCTTCTGT
1 ATTGCACTTCGGTGCCTCTAT
24209184 ATTGCACTTCGGTGCCTCT
1 ATTGCACTTCGGTGCCTCT
24209203 GTTAGCATTT
Statistics
Matches: 31, Mismatches: 7, Indels: 2
0.77 0.17 0.05
Matches are distributed among these distances:
20 16 0.52
21 15 0.48
ACGTcount: A:0.12, C:0.27, G:0.20, T:0.42
Consensus pattern (21 bp):
ATTGCACTTCGGTGCCTCTAT
Found at i:24209203 original size:21 final size:21
Alignment explanation
Indices: 24209143--24209204 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
24209133 CTCATACAAG
*
24209143 ATTGCACTTCGGTGCCTCTAT
1 ATTGCACTTCGGTGCCTCTGT
* * *
24209164 -TTGCACTTTGATGCTTCTGT
1 ATTGCACTTCGGTGCCTCTGT
24209184 ATTGCACTTCGGTGCCTCTGT
1 ATTGCACTTCGGTGCCTCTGT
24209205 TAGCATTTTT
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.11, C:0.26, G:0.21, T:0.42
Consensus pattern (21 bp):
ATTGCACTTCGGTGCCTCTGT
Found at i:24214712 original size:30 final size:29
Alignment explanation
Indices: 24214676--24214811 Score: 116
Period size: 30 Copynumber: 4.6 Consensus size: 29
24214666 CTTCGGATAT
*
24214676 AAATTATGAAAAGGGATGGTGATGACCATC
1 AAATTATGAAAAAGGATGGT-ATGACCATC
* *
24214706 AAATTATGAAAAAGGATGGCT-TCGGCTATC
1 AAATTATGAAAAAGGATGG-TAT-GACCATC
* * * *
24214736 -GATCTATGAAAAAGGATAGCTTTGACTATC
1 AAAT-TATGAAAAAGGAT-GGTATGACCATC
* *
24214766 -AATTATGAAAAGGGATGGTGACGACCATC
1 AAATTATGAAAAAGGATGGT-ATGACCATC
24214795 AAATTATGAAAAAGGAT
1 AAATTATGAAAAAGGAT
24214812 AGCTTCGGCT
Statistics
Matches: 86, Mismatches: 13, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
28 2 0.02
29 21 0.24
30 60 0.70
31 3 0.03
ACGTcount: A:0.40, C:0.11, G:0.24, T:0.25
Consensus pattern (29 bp):
AAATTATGAAAAAGGATGGTATGACCATC
Found at i:24214754 original size:89 final size:89
Alignment explanation
Indices: 24214643--24214871 Score: 300
Period size: 89 Copynumber: 2.6 Consensus size: 89
24214633 TAATGGTGAT
* * *
24214643 TATCAATCTATGAAAAGGGATAGCTTCGGATATAAATTATGAAAAGGGATGGTGATGACCATCAA
1 TATCGATCTATGAAAAAGGATAGCTTCGGATATAAATTATGAAAAGGGATGGTGACGACCATCAA
*
24214708 ATTATGAAAAAGGATGGCTTCGGC
66 ATTATGAAAAAGGATAGCTTCGGC
* *
24214732 TATCGATCTATGAAAAAGGATAGCTT-TGACTATCAATTATGAAAAGGGATGGTGACGACCATCA
1 TATCGATCTATGAAAAAGGATAGCTTCGGA-TATAAATTATGAAAAGGGATGGTGACGACCATCA
24214796 AATTATGAAAAAGGATAGCTTCGGC
65 AATTATGAAAAAGGATAGCTTCGGC
* * ** * * *
24214821 TATTGAACTATG-AAAAGAGATAATTTCGGTTATCAAATTACGAAAAAGGAT
1 TATCGATCTATGAAAAAG-GATAGCTTCGGATAT-AAATTATGAAAAGGGAT
24214872 AGGTCAGCCA
Statistics
Matches: 121, Mismatches: 15, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
88 7 0.06
89 99 0.82
90 15 0.12
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (89 bp):
TATCGATCTATGAAAAAGGATAGCTTCGGATATAAATTATGAAAAGGGATGGTGACGACCATCAA
ATTATGAAAAAGGATAGCTTCGGC
Found at i:24214782 original size:59 final size:58
Alignment explanation
Indices: 24214643--24214783 Score: 158
Period size: 59 Copynumber: 2.4 Consensus size: 58
24214633 TAATGGTGAT
* * *
24214643 TATCAATCTATGAAAAGGGATAGCTTCGGATATAAATTATGAAAAGGGATGGTGATGAC
1 TATCAAT-TATGAAAAGGGATGGCTTCGGATATAAATTATGAAAAAGGATGCTGATGAC
* * * ** *
24214702 CATCAAATTATGAAAAAGGATGGCTTCGGCTATCGATCTATGAAAAAGGATAGCT-TTGAC
1 TATC-AATTATGAAAAGGGATGGCTTCGGATATAAAT-TATGAAAAAGGAT-GCTGATGAC
24214762 TATCAATTATGAAAAGGGATGG
1 TATCAATTATGAAAAGGGATGG
24214784 TGACGACCAT
Statistics
Matches: 68, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
59 44 0.65
60 22 0.32
61 2 0.03
ACGTcount: A:0.38, C:0.11, G:0.24, T:0.27
Consensus pattern (58 bp):
TATCAATTATGAAAAGGGATGGCTTCGGATATAAATTATGAAAAAGGATGCTGATGAC
Found at i:24214833 original size:30 final size:30
Alignment explanation
Indices: 24214710--24214836 Score: 114
Period size: 30 Copynumber: 4.3 Consensus size: 30
24214700 ACCATCAAAT
* * *
24214710 TATGAAAAAGGATGGCTTCGGCTATCGATC
1 TATGAAAAAGGATAGCTTCGACTATCGAAC
* *
24214740 TATGAAAAAGGATAGCTTTGACTATC-AAT
1 TATGAAAAAGGATAGCTTCGACTATCGAAC
* * * * * *
24214769 TATGAAAAGGGAT-GGTGACGACCATCAAAT
1 TATGAAAAAGGATAGCT-TCGACTATCGAAC
* *
24214799 TATGAAAAAGGATAGCTTCGGCTATTGAAC
1 TATGAAAAAGGATAGCTTCGACTATCGAAC
24214829 TATGAAAA
1 TATGAAAA
24214837 GAGATAATTT
Statistics
Matches: 76, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
28 2 0.03
29 19 0.25
30 53 0.70
31 2 0.03
ACGTcount: A:0.39, C:0.13, G:0.23, T:0.26
Consensus pattern (30 bp):
TATGAAAAAGGATAGCTTCGACTATCGAAC
Found at i:24222634 original size:55 final size:54
Alignment explanation
Indices: 24222519--24222649 Score: 156
Period size: 55 Copynumber: 2.4 Consensus size: 54
24222509 TCAACACGGT
* * * *
24222519 TGTGTGACCATATTTCAAATGTACACACGATCTAGCACAAGGCCTGCGACATGG
1 TGTGTGACCATATTTCGAATATACACACGATCTAGCACAAGGCCTGCGACACGC
* * *
24222573 TCGTGTGACCATATTTCGAATATACACAC-AGTCTGGCACATGGCCTGTGACACGAC
1 T-GTGTGACCATATTTCGAATATACACACGA-TCTAGCACAAGGCCTGCGACACG-C
*
24222629 TGTGTGACCTTATTTCGAATA
1 TGTGTGACCATATTTCGAATA
24222650 CCCACATGGG
Statistics
Matches: 66, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
54 2 0.03
55 63 0.95
56 1 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (54 bp):
TGTGTGACCATATTTCGAATATACACACGATCTAGCACAAGGCCTGCGACACGC
Found at i:24225396 original size:23 final size:21
Alignment explanation
Indices: 24225340--24225397 Score: 55
Period size: 21 Copynumber: 2.6 Consensus size: 21
24225330 TAAGGAGGTG
24225340 TAATGCTCTCCTTTTAATGAAA
1 TAATGCTC-CCTTTTAATGAAA
**
24225362 TAACAACT-CCTTTTAATGATATA
1 TAA-TGCTCCCTTTTAATGA-A-A
24225385 TAATGCTCCCTTT
1 TAATGCTCCCTTT
24225398 GTATGTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 7
0.72 0.10 0.18
Matches are distributed among these distances:
21 11 0.39
22 6 0.21
23 11 0.39
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (21 bp):
TAATGCTCCCTTTTAATGAAA
Found at i:24228057 original size:21 final size:21
Alignment explanation
Indices: 24228012--24228057 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
24228002 TGCGAGAGAG
* *
24228012 CCAGCATTCCAATCATGGCTA
1 CCAGCATTCCAATCAAGCCTA
* *
24228033 CCAGCATTCCAATGAAGCCTT
1 CCAGCATTCCAATCAAGCCTA
24228054 CCAG
1 CCAG
24228058 AAGTATTATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.22
Consensus pattern (21 bp):
CCAGCATTCCAATCAAGCCTA
Found at i:24237133 original size:18 final size:17
Alignment explanation
Indices: 24237100--24237138 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 17
24237090 TTTTATAAAT
24237100 TGTGAATTATATTTGATA
1 TGTGAATTATATTTGA-A
24237118 TGTGAATTA-ATATTGAA
1 TGTGAATTATAT-TTGAA
24237135 TGTG
1 TGTG
24237139 GAAGGAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 7 0.35
18 13 0.65
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.46
Consensus pattern (17 bp):
TGTGAATTATATTTGAA
Found at i:24237397 original size:23 final size:23
Alignment explanation
Indices: 24237367--24237485 Score: 159
Period size: 23 Copynumber: 5.2 Consensus size: 23
24237357 GTTATTGATC
*
24237367 AGTGGTAGCTTCGGCTACATTTT
1 AGTGGTAGCTTCGGCTACATATT
* *
24237390 AGTGGTAGCTACAGCTACATATT
1 AGTGGTAGCTTCGGCTACATATT
*
24237413 AGTGGTAGCTTCGGCTACATTTT
1 AGTGGTAGCTTCGGCTACATATT
* *
24237436 AGTGGTAGCTAT-GGCTACGTATC
1 AGTGGTAGCT-TCGGCTACATATT
*
24237459 AGTGGTAGCTTCGGCTACATATC
1 AGTGGTAGCTTCGGCTACATATT
24237482 AGTG
1 AGTG
24237486 TGGCACTGAT
Statistics
Matches: 84, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
22 1 0.01
23 82 0.98
24 1 0.01
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.34
Consensus pattern (23 bp):
AGTGGTAGCTTCGGCTACATATT
Found at i:24237419 original size:46 final size:46
Alignment explanation
Indices: 24237364--24237478 Score: 194
Period size: 46 Copynumber: 2.5 Consensus size: 46
24237354 AGTGTTATTG
24237364 ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
* ** *
24237410 ATTAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTATGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
24237456 ATCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
24237479 ATCAGTGTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 64 1.00
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (46 bp):
ATCAGTGGTAGCTTCGGCTACATTTTAGTGGTAGCTACAGCTACAT
Found at i:24244405 original size:56 final size:50
Alignment explanation
Indices: 24244306--24244534 Score: 225
Period size: 50 Copynumber: 4.5 Consensus size: 50
24244296 GACATTAAGA
* * *
24244306 AGATGAGA--TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTG
1 AGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCA-C--CG
* * *
24244357 AGATTATGAGAGGTCCTATGTACGACCATGTCTAGGACGTGGCGTTGGCACCG
1 AG---ATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCG
24244410 AGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACC-
1 AGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCG
** * * *
24244459 ACGATGAGAGGTCCCCCGTAAGACCATGTCTGGGAC-TGGCATGGGCTA-CG
1 A-GATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGC-ACCG
* **
24244509 ATATGAGAACTCCCATGTAAGACCAT
1 AGATGAGAGGTCCCATGTAAGACCAT
24244535 ATTTGGGATA
Statistics
Matches: 151, Mismatches: 19, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
49 30 0.20
50 77 0.51
51 2 0.01
53 3 0.02
54 6 0.04
55 1 0.01
56 32 0.21
ACGTcount: A:0.26, C:0.22, G:0.29, T:0.22
Consensus pattern (50 bp):
AGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCG
Found at i:24244548 original size:99 final size:100
Alignment explanation
Indices: 24244362--24244555 Score: 230
Period size: 99 Copynumber: 1.9 Consensus size: 100
24244352 CATTGAGATT
* * * * * **
24244362 ATGAGAGGTCCTATGTACGACCATGTCTAGGACGTGGCGTTGGCACCGAGATGAGAGGTCCCATG
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACGTGGCATGGGCACCGAGATGAGAACTCCCATG
* *
24244427 TAAGACCATGTCTAGGACATGGCGTTGGCACCACG
66 TAAGACCATATCTAGGACATGGCATTGGCACCACG
* * *
24244462 ATGAGAGGTCCCCCGTAAGACCATGTCTGGGAC-TGGCATGGGCTA-CGATATGAGAACTCCCAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTAGGACGTGGCATGGGC-ACCGAGATGAGAACTCCCAT
* * *
24244525 GTAAGACCATATTTGGGATATGGCATTGGCA
65 GTAAGACCATATCTAGGACATGGCATTGGCA
24244556 GTACAGAAAG
Statistics
Matches: 78, Mismatches: 15, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
99 49 0.63
100 29 0.37
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.22
Consensus pattern (100 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTAGGACGTGGCATGGGCACCGAGATGAGAACTCCCATG
TAAGACCATATCTAGGACATGGCATTGGCACCACG
Found at i:24252040 original size:50 final size:50
Alignment explanation
Indices: 24251930--24252128 Score: 188
Period size: 50 Copynumber: 3.9 Consensus size: 50
24251920 ACATTAAGAG
* * *
24251930 GATGAGA--TCCCATGTAAGACCATGTCTGGGATATGGCATTAGCATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGA
* *
24251981 GATTATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
** * *
24252034 GATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCTCCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
* ** * * *
24252084 TATGAGAACTCCCATGTACGA-CATATCTGGGATATGGCATTGGCA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
24252129 GTACAAAAAA
Statistics
Matches: 122, Mismatches: 21, Indels: 12
0.79 0.14 0.08
Matches are distributed among these distances:
49 20 0.16
50 58 0.48
51 1 0.01
53 3 0.02
54 6 0.05
55 1 0.01
56 33 0.27
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.24
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA
Found at i:24252403 original size:20 final size:20
Alignment explanation
Indices: 24252378--24252419 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
24252368 TGAGTTATTT
24252378 AAGTAAGCAAATAAGTAAAC
1 AAGTAAGCAAATAAGTAAAC
** *
24252398 AAGTAAGTGAGTAAGTAAAC
1 AAGTAAGCAAATAAGTAAAC
24252418 AA
1 AA
24252420 TCGAGTAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.57, C:0.07, G:0.19, T:0.17
Consensus pattern (20 bp):
AAGTAAGCAAATAAGTAAAC
Found at i:24258000 original size:35 final size:35
Alignment explanation
Indices: 24257939--24258007 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
24257929 ACTCTATGTT
* *
24257939 TGGCGTGTTTCGGTTAGACTAGCTCTTATGAGCAC
1 TGGCGTGTTTCAGTTAGACTAACTCTTATGAGCAC
*
24257974 TGGCGTGTTTCAGTTGGA-TCAACTCTTATGAGCA
1 TGGCGTGTTTCAGTTAGACT-AACTCTTATGAGCA
24258008 TTTGGTGTGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 1 0.03
35 29 0.97
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.35
Consensus pattern (35 bp):
TGGCGTGTTTCAGTTAGACTAACTCTTATGAGCAC
Found at i:24260771 original size:11 final size:11
Alignment explanation
Indices: 24260740--24260774 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
24260730 CAACTAATTT
24260740 TTTTTTTAT-A
1 TTTTTTTATAA
24260750 TTTTTTTATAA
1 TTTTTTTATAA
*
24260761 TTTTTTAATAA
1 TTTTTTTATAA
24260772 TTT
1 TTT
24260775 ATCTAAAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 9 0.39
11 14 0.61
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTTTTATAA
Found at i:24261014 original size:15 final size:17
Alignment explanation
Indices: 24260969--24261006 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
24260959 AACTGGACCG
*
24260969 GAACTATCTCTAAACGA
1 GAACTATCTATAAACGA
24260986 GAACTATCTATAAACGA
1 GAACTATCTATAAACGA
24261003 GAAC
1 GAAC
24261007 ACTTTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.45, C:0.21, G:0.13, T:0.21
Consensus pattern (17 bp):
GAACTATCTATAAACGA
Found at i:24271656 original size:17 final size:17
Alignment explanation
Indices: 24271634--24271667 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
24271624 TTATAATCCA
24271634 TATTTAAATTCATAACT
1 TATTTAAATTCATAACT
24271651 TATTTAAATTCATAACT
1 TATTTAAATTCATAACT
24271668 CTCAACAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.00, T:0.47
Consensus pattern (17 bp):
TATTTAAATTCATAACT
Found at i:24276154 original size:7 final size:7
Alignment explanation
Indices: 24276144--24276168 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24276134 ATTCGATTGA
24276144 TATTTAG
1 TATTTAG
24276151 TATTTAG
1 TATTTAG
24276158 TATTTAG
1 TATTTAG
24276165 TATT
1 TATT
24276169 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:24277320 original size:43 final size:45
Alignment explanation
Indices: 24277273--24277358 Score: 140
Period size: 43 Copynumber: 2.0 Consensus size: 45
24277263 ATATTTTAAA
*
24277273 TATTTTGATATTATTTTATGTAAAAAAATAGAA-TTT-TTTGAGT
1 TATTTTGATATTATTTGATGTAAAAAAATAGAAGTTTATTTGAGT
*
24277316 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGA
1 TATTTTGATATTATTTGATGTAAAAAAATAGAAGTTTATTTGA
24277359 TGTAATAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
43 31 0.79
44 3 0.08
45 5 0.13
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (45 bp):
TATTTTGATATTATTTGATGTAAAAAAATAGAAGTTTATTTGAGT
Found at i:24277498 original size:29 final size:29
Alignment explanation
Indices: 24277384--24278223 Score: 752
Period size: 29 Copynumber: 31.4 Consensus size: 29
24277374 AACCTAATTT
*
24277384 AACCCTAAACCTCTAACCTAAATTAATTAAA
1 AACCCT-AACC-CTAACCTAATTTAATTAAA
*
24277415 AACCCTAACCTCTAACCTAAATTAATTAAA
1 AACCCTAACC-CTAACCTAATTTAATTAAA
* *
24277445 AACCCTAACCTCTAACCTAAATTAATTACA
1 AACCCTAACC-CTAACCTAATTTAATTAAA
*
24277475 AACCCTAACCCTAATCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24277504 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
24277533 AACCCTAACCTCTAA-CTAAATT-ATTACA
1 AACCCTAACC-CTAACCTAATTTAATTAAA
24277561 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
24277590 AACCTTAACCCTAACCTGATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24277619 AACCCTAA---T---CTAATTTAATT-AA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24277641 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
24277670 AATCCTAA-CC---CC----TTAACTTAAA
1 AACCCTAACCCTAACCTAATTTAA-TTAAA
*
24277692 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
24277721 AACCCTAACCCCTAACCTAAATTAATTACA
1 AACCCTAA-CCCTAACCTAATTTAATTAAA
*
24277751 AACTCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24277780 AA-CC---CCCTAACCTAATTTAATT--A
1 AACCCTAACCCTAACCTAATTTAATTAAA
24277803 AA----AACCCTAACCTAATTTAACCTT--A
1 AACCCTAACCCTAACCTAATTTAA--TTAAA
24277828 AACCCTAA-CCT-A---AA-TTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
* *
24277851 AACCCTAACCCCTAACCTAAATTAATTATA
1 AACCCTAA-CCCTAACCTAATTTAATTAAA
24277881 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24277910 AACCCTAA--C---CC---TTTAACTTAAA
1 AACCCTAACCCTAACCTAATTTAA-TTAAA
*
24277932 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
24277961 AACCCTAAACCCT----T-A---ACTTAAA
1 AACCCT-AACCCTAACCTAATTTAATTAAA
*
24277983 AACCCTAACCTTAACCTAATTTAATT--A
1 AACCCTAACCCTAACCTAATTTAATTAAA
24278010 AA----AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24278035 AA-CCT-----TAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
24278058 AACCCT-A----AACC---CTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
24278079 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24278108 AA---T---CCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
*
24278131 AACCCTAAACCCT----T-A---ACTTAAA
1 AACCCT-AACCCTAACCTAATTTAATTAAA
*
24278153 AACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24278182 AACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCCTAACCTAATTTAATTAAA
24278211 AACCCTAAACCCT
1 AACCCT-AACCCT
24278224 TAACTTAAAA
Statistics
Matches: 684, Mismatches: 39, Indels: 173
0.76 0.04 0.19
Matches are distributed among these distances:
21 36 0.05
22 60 0.09
23 103 0.15
24 11 0.02
25 36 0.05
26 14 0.02
27 11 0.02
28 38 0.06
29 238 0.35
30 131 0.19
31 6 0.01
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (29 bp):
AACCCTAACCCTAACCTAATTTAATTAAA
Found at i:24277570 original size:51 final size:50
Alignment explanation
Indices: 24277510--24278228 Score: 343
Period size: 51 Copynumber: 13.8 Consensus size: 50
24277500 TAAAAACCCT
24277510 AACCCTAACCTAATTTAATTAAAAACCCTAACCTCTAACTAAATTATTACAAA
1 AACCCTAACCTAATTTAATTAAAAACCCTAACC-CTAACTAAATTATTAC--A
* * * *
24277563 CCCTAACCCTAACCTAATTTAATTAAAAACCTTAACCCTAACCTGATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA-CTAAATT-ATTACA
* * *
24277619 AACCCTAATCTAATTTAATT-AAAACCCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA-CTAAATT-ATTACA
* ** * * *
24277670 AATCCTAACC--CCTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAA-TTAAAAACCCTAACCCTAA-CTAAATT-ATTACA
* * * *
24277721 AACCCTAACCCCTAACCTAAATTAATTACAAACTCTAACCCTAACCTAATTTAATTAAA
1 AACCCTAA--CCTAA--T---TTAATTAAAAACCCTAACCCTAA-CTAAATT-ATTACA
* * **
24277780 AACCCCCTAACCTAATTTAATTAAAAACCCTAA-CCTAATTTAA-CCTT--A
1 AA--CCCTAACCTAATTTAATTAAAAACCCTAACCCTAACTAAATTATTACA
* *
24277828 AACCCTAACCTAAATTAATTAAAAACCCTAACCCCTAACCTAAATTAATTATAAACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAA-CCCTAA-CTAAATT-A-T-T--A--CA
*** *
24277887 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTTTAACTTAAA--AACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCC--TAAC-TAAATTATTACA
* *** *
24277938 AACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAA--AACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCC-TAAC-TAAATTATTACA
* * *
24277989 AACCTTAACCTAATTTAATTAAAAACCCTAA-CCTAATTTAATTA--A-A
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACTAAATTATTACA
* * *** *
24278035 AACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAATTAAA--AACCCT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCC-TAACTAAATTATTACA
* * * *
24278085 AACCTTAACCTAATTTAATTAAAAATCCTAA-CCTAATTTAATTA--A-A
1 AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACTAAATTATTACA
* * * *
24278131 AACCCTAAACC---CTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCT
1 AACCCT-AACCTAATTTAA-TTAAAAACCCTAACCCTAA-CTAAATT-ATT----A--CA
24278188 AACCCTAACCTAATTTAATTAAAAACCCTAAACCCTTAACT
1 AACCCTAACCTAATTTAATTAAAAACCCT-AACCC-TAACT
24278229 TAAAAACCCT
Statistics
Matches: 544, Mismatches: 57, Indels: 120
0.75 0.08 0.17
Matches are distributed among these distances:
44 4 0.01
45 12 0.02
46 66 0.12
47 21 0.04
48 16 0.03
49 20 0.04
50 34 0.06
51 149 0.27
52 27 0.05
53 8 0.01
54 16 0.03
56 9 0.02
57 45 0.08
58 18 0.03
59 79 0.15
60 14 0.03
61 6 0.01
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (50 bp):
AACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACTAAATTATTACA
Found at i:24277642 original size:22 final size:23
Alignment explanation
Indices: 24277567--24278243 Score: 324
Period size: 23 Copynumber: 26.5 Consensus size: 23
24277557 TACAAACCCT
24277567 AACCCTAACCTAATTTAATTAAAAA
1 AACCCTAACCTAATTTAATT--AAA
*
24277592 CCTTAACCCTAACCTGATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
24277619 AACCCTAATCTAATTTAATTAAAA
1 AACCCTAACCTAATTTAATT-AAA
24277643 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
* *
24277670 AATCCTAACCCCTTAACTTAA--AAA
1 AACCCTAA--CC-TAATTTAATTAAA
*
24277694 CCCTAACCTTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
24277721 AACCCTAACCCCTAACCTAAATTAATTACA
1 AACCCTAA--CCTAA--T---TTAATTAAA
*
24277751 AACTCTAACCCTAACCTAATTTAATTAAA
1 AACCCT------AACCTAATTTAATTAAA
24277780 AACCCCCTAACCTAATTTAATTAAA
1 AA--CCCTAACCTAATTTAATTAAA
24277805 AACCCTAACCTAATTTAACCTT--A
1 AACCCTAACCTAATTTAA--TTAAA
*
24277828 AACCCTAACCTAAATTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
24277851 AACCCTAACCCCTAACCTAAATTAATTATAA
1 AACCCTAA--CCTAA--T---TTAATTA-AA
*
24277882 ACCCTAACCCTAACCTAATTTAATTAAA
1 A-AC----CCTAACCTAATTTAATTAAA
*
24277910 AACCCTAACC--CTTTAACTTAAA
1 AACCCTAACCTAATTTAA-TTAAA
24277932 AACCCTAACCTTAACCTAATTTAATTAAA
1 AA--C---CC-TAACCTAATTTAATTAAA
*
24277961 AACCCTAAACCCTTAACTTAA--AAA
1 AACCCT-AA-CC-TAATTTAATTAAA
*
24277985 CCCTAACCTTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
24278012 AACCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
24278035 AACCTTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
24278058 AACCCTAAACCCTTAA-TTAA--AAA
1 AACCCT-AA-CC-TAATTTAATTAAA
*
24278081 CCCTAACCTTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
24278108 AATCCTAACCTAATTTAATTAAA
1 AACCCTAACCTAATTTAATTAAA
*
24278131 AACCCTAAACCCTTAACTTAA--AAA
1 AACCCT-AA-CC-TAATTTAATTAAA
*
24278155 CCCTAACCTTAACCTAATTTAATTAAAAA
1 ----AACCCTAACCTAATTTAATT--AAA
24278184 CCCTAACCCTAACCTAATTTAATTAAA
1 ----AACCCTAACCTAATTTAATTAAA
*
24278211 AACCCTAAACC---CTTAACTTAAA
1 AACCCT-AACCTAATTTAA-TTAAA
24278233 AACCCTAACCT
1 AACCCTAACCT
24278244 TAACGTAATG
Statistics
Matches: 525, Mismatches: 35, Indels: 183
0.71 0.05 0.25
Matches are distributed among these distances:
21 15 0.03
22 18 0.03
23 167 0.32
24 28 0.05
25 70 0.13
26 32 0.06
27 32 0.06
28 43 0.08
29 69 0.13
30 25 0.05
31 6 0.01
32 3 0.01
34 10 0.02
36 7 0.01
ACGTcount: A:0.45, C:0.26, G:0.00, T:0.29
Consensus pattern (23 bp):
AACCCTAACCTAATTTAATTAAA
Found at i:24278176 original size:221 final size:223
Alignment explanation
Indices: 24277621--24278193 Score: 750
Period size: 240 Copynumber: 2.5 Consensus size: 223
24277611 TAATTAAAAA
* * * *
24277621 CCCTAATCTAATTTAATTA-AAACCCTAACCCTAACCTAATTTAATTAAAAATCCTAACCCCTTA
1 CCCTAACCTAAATTAATTATAAA--C-AACCCTAACCTAATTTAATTAAAAACCCTAACCCTTTA
24277685 ACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCCTAACCTAAATTAATTAC
63 ACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA-CCCT----T-AATT-A--A-
*
24277750 AAACTCTAACCCTAACCTAATTTAATTAAAAACCCCCTAACCTAATTTAATTAAAAACCCTAACC
118 AAACCCTAACCCTAACCTAATTTAATTAAAAA-CCCCTAACCTAATTTAATTAAAAACCCTAACC
24277815 TAATTTAACCTTAAACCCTAACCTAAATTAATTAAAAACCCTAAC
182 TAATTTAA-CTTAAACCCTAACC--AATTAATTAAAAACCCTAAC
24277860 CCCTAACCTAAATTAATTATAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTTA
1 CCCTAACCTAAATTAATTATAAA--C-AACCCTAACCTAATTTAATTAAAAACCCTAACCCTTTA
24277925 ACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAAACCCTTAACTTAAAAACCCTA
63 ACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCT-AACCCTTAA-TTAAAAACCCTA
* *
24277990 ACCTTAACCTAATTTAATTAAAAA-CCCTAACCTAATTTAATTAAAAACCTTAACCTAATTTAA-
126 ACCCTAACCTAATTTAATTAAAAACCCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAAC
*
24278053 TTAAAAACCCTAAACC-CTTAATTAAAAACCCTAA-
191 TT--AAACCCT-AACCAATTAATTAAAAACCCTAAC
* * *
24278087 CCTTAACCTAATTTAA-T-TAAA-AATCCTAACCTAATTTAATTAAAAACCCTAAACCC-TTAAC
1 CCCTAACCTAAATTAATTATAAACAACCCTAACCTAATTTAATTAAAAACCCT-AACCCTTTAAC
24278148 TTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCT
65 TTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCT
24278194 AACCTAATTT
Statistics
Matches: 316, Mismatches: 11, Indels: 33
0.88 0.03 0.09
Matches are distributed among these distances:
220 6 0.02
221 73 0.23
222 5 0.02
225 4 0.01
226 1 0.00
227 14 0.04
228 19 0.06
230 45 0.14
231 4 0.01
232 30 0.09
233 1 0.00
235 3 0.01
236 3 0.01
239 17 0.05
240 89 0.28
241 2 0.01
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.29
Consensus pattern (223 bp):
CCCTAACCTAAATTAATTATAAACAACCCTAACCTAATTTAATTAAAAACCCTAACCCTTTAACT
TAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCCTTAATTAAAAACCCTAACCCT
AACCTAATTTAATTAAAAACCCCTAACCTAATTTAATTAAAAACCCTAACCTAATTTAACTTAAA
CCCTAACCAATTAATTAAAAACCCTAAC
Found at i:24278232 original size:51 final size:49
Alignment explanation
Indices: 24277872--24278252 Score: 411
Period size: 51 Copynumber: 7.6 Consensus size: 49
24277862 CTAACCTAAA
* *
24277872 TTAATTATAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCC
1 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCC
24277921 TTTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAAACCC
1 -TTAA-TTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCT-AACCC
24277973 TTAACTTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAA-CC
1 TTAA-TTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCC
24278022 -TAATTTAATTAAA----AACCTTAACCTAATTTAATTAAAAACCCTAAACCC
1 TTAA-TTAA--AAACCCTAACCTTAACCTAATTTAATTAAAAACCCT-AACCC
* *
24278070 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAATCCTAACCTAAT
1 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACC---C
* ***** * *
24278122 TTAATTAAAAACCCTAAACCCTTAACTTAA---AAACCCTAACCTTAACCTAAT
1 TTAATTAAAAACCCT-AA-CCTTAACCTAATTTAATTAAAAACCCTAACC---C
*
24278173 TTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAACCC
1 TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCT-AACCC
*
24278223 TTAACTTAAAAACCCTAACCTTAACGTAAT
1 TTAA-TTAAAAACCCTAACCTTAACCTAAT
24278253 GTTAGATTTG
Statistics
Matches: 286, Mismatches: 24, Indels: 41
0.81 0.07 0.12
Matches are distributed among these distances:
46 32 0.11
47 2 0.01
48 13 0.05
49 18 0.06
50 43 0.15
51 135 0.47
52 27 0.09
53 6 0.02
54 10 0.03
ACGTcount: A:0.45, C:0.25, G:0.00, T:0.29
Consensus pattern (49 bp):
TTAATTAAAAACCCTAACCTTAACCTAATTTAATTAAAAACCCTAACCC
Found at i:24278448 original size:110 final size:110
Alignment explanation
Indices: 24278255--24278460 Score: 394
Period size: 110 Copynumber: 1.9 Consensus size: 110
24278245 AACGTAATGT
24278255 TAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATAATTTTA
1 TAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATAATTTTA
24278320 CTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
66 CTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
* *
24278365 TAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAATTTTATATAATTTGATAATTTTA
1 TAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATAATTTTA
24278430 CTAACCATTAATACAATTTTTTGACTTAATA
66 CTAACCATTAATACAATTTTTTGACTTAATA
24278461 CAATTTATCA
Statistics
Matches: 94, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 94 1.00
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.43
Consensus pattern (110 bp):
TAGATTTGGAAAAATGTTTTGACTGGTACTAACAAATAATAATTTTACATAATTTGATAATTTTA
CTAACCATTAATACAATTTTTTGACTTAATAATTTTACATTCACA
Found at i:24278477 original size:17 final size:18
Alignment explanation
Indices: 24278436--24278477 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
24278426 TTTACTAACC
* *
24278436 ATTAATACAATTTTTTGA
1 ATTAATACAATTTTATCA
*
24278454 CTTAATACAA-TTTATCA
1 ATTAATACAATTTTATCA
24278471 ATTAATA
1 ATTAATA
24278478 ATTTCACAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (18 bp):
ATTAATACAATTTTATCA
Found at i:24281791 original size:126 final size:124
Alignment explanation
Indices: 24281492--24281842 Score: 535
Period size: 126 Copynumber: 2.8 Consensus size: 124
24281482 CCCAAACATG
24281492 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* * *
24281557 TAGAAGCAATTTTATATTATTTGCTCATAAACGTC-AAAAAAATTATTTCTTACATGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
* * * * * *
24281615 CTAATGTAGCAAAAGCGCG-CTGATGAGGCCCCGATTTCACAAATTCTTCTCAAAGAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTC-CACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTG
* * *
24281679 CTAGAAGCGATTTTATACTATTTGCTCAGAAACATCAAAAAAATGATTATTTCTTCCGTGAC
65 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAA--ATTATTTCTTACATGAC
24281741 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
**
24281806 TAGAAGCGATTTTATACTATTTTATCAGAAACGTCAA
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAA
24281843 CTCGAAATTA
Statistics
Matches: 202, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
122 1 0.00
123 88 0.44
124 6 0.03
126 106 0.52
127 1 0.00
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
Found at i:24283140 original size:15 final size:15
Alignment explanation
Indices: 24283120--24283193 Score: 51
Period size: 15 Copynumber: 4.9 Consensus size: 15
24283110 CTGAAAAGAA
24283120 GAAATAAAAAAATTT
1 GAAATAAAAAAATTT
* *
24283135 GTAATAAAGAAA-TT
1 GAAATAAAAAAATTT
* ***
24283149 GAAAATAATAAAAGAA
1 G-AAATAAAAAAATTT
24283165 GAAATAAAAAAAATTT
1 GAAAT-AAAAAAATTT
* *
24283181 GTAATAAAGAAAT
1 GAAATAAAAAAAT
24283194 CGAAAATAAT
Statistics
Matches: 43, Mismatches: 13, Indels: 6
0.69 0.21 0.10
Matches are distributed among these distances:
14 3 0.07
15 29 0.67
16 11 0.26
ACGTcount: A:0.66, C:0.00, G:0.11, T:0.23
Consensus pattern (15 bp):
GAAATAAAAAAATTT
Found at i:24283189 original size:46 final size:45
Alignment explanation
Indices: 24283113--24283215 Score: 188
Period size: 46 Copynumber: 2.3 Consensus size: 45
24283103 ATATGATCTG
*
24283113 AAAAGAAGAAATAAAAAAATTTGTAATAAAGAAATTGAAAATAAT
1 AAAAGAAGAAATAAAAAAATTTGTAATAAAGAAATCGAAAATAAT
24283158 AAAAGAAGAAATAAAAAAAATTTGTAATAAAGAAATCGAAAATAAT
1 AAAAGAAGAAAT-AAAAAAATTTGTAATAAAGAAATCGAAAATAAT
24283204 AAAAGAAGAAAT
1 AAAAGAAGAAAT
24283216 TTGAGAATAA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
45 12 0.21
46 44 0.79
ACGTcount: A:0.68, C:0.01, G:0.12, T:0.19
Consensus pattern (45 bp):
AAAAGAAGAAATAAAAAAATTTGTAATAAAGAAATCGAAAATAAT
Found at i:24283248 original size:17 final size:18
Alignment explanation
Indices: 24283222--24283255 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
24283212 AAATTTGAGA
24283222 ATAAAAAAATAA-AAATC
1 ATAAAAAAATAAGAAATC
*
24283239 ATAAATAAATAAGAAAT
1 ATAAAAAAATAAGAAAT
24283256 AGAAATTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (18 bp):
ATAAAAAAATAAGAAATC
Found at i:24286384 original size:40 final size:40
Alignment explanation
Indices: 24286340--24286466 Score: 115
Period size: 40 Copynumber: 3.3 Consensus size: 40
24286330 ACTAGCCTGG
*
24286340 TAAACCGACAAATATAATGGTGTGCCCAACACTAGTCAAA
1 TAAACCGACAAATATAATGGTGTGCCCAGCACTAGTCAAA
* * * *
24286380 TAAACTGAC----A-AA-GGT-TACACCCAGCGCTAGTCTAA
1 TAAACCGACAAATATAATGGTGT--GCCCAGCACTAGTCAAA
* *
24286415 TAAACCGATAAATATAATGGTGTGCCCAGCACTAGTCGAA
1 TAAACCGACAAATATAATGGTGTGCCCAGCACTAGTCAAA
*
24286455 TAAATCGACAAA
1 TAAACCGACAAA
24286467 GATTGCACCC
Statistics
Matches: 66, Mismatches: 12, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
33 1 0.02
34 3 0.05
35 22 0.33
36 1 0.02
39 1 0.02
40 34 0.52
41 3 0.05
42 1 0.02
ACGTcount: A:0.41, C:0.22, G:0.17, T:0.20
Consensus pattern (40 bp):
TAAACCGACAAATATAATGGTGTGCCCAGCACTAGTCAAA
Found at i:24286465 original size:75 final size:75
Alignment explanation
Indices: 24286285--24286485 Score: 251
Period size: 75 Copynumber: 2.7 Consensus size: 75
24286275 TGACGATAGA
** * * * * * * **
24286285 TGTGCCCAGCACTAGTCGAACGAATCGATAAAAGTTGCGCCTAGCACTAGCCTGGTAAACCGACA
1 TGTGCCCAGCACTAGTCGAATAAATCGACAAAGGTTGCACCCAGCGCTAGTCTAATAAACCGACA
24286350 AATATAATGG
66 AATATAATGG
* * * *
24286360 TGTGCCCAACACTAGTCAAATAAA-CTGACAAAGGTTACACCCAGCGCTAGTCTAATAAACCGAT
1 TGTGCCCAGCACTAGTCGAATAAATC-GACAAAGGTTGCACCCAGCGCTAGTCTAATAAACCGAC
24286424 AAATATAATGG
65 AAATATAATGG
*
24286435 TGTGCCCAGCACTAGTCGAATAAATCGACAAAGATTGCACCCAGCGCTAGT
1 TGTGCCCAGCACTAGTCGAATAAATCGACAAAGGTTGCACCCAGCGCTAGT
24286486 TGGATAACCG
Statistics
Matches: 106, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
74 1 0.01
75 104 0.98
76 1 0.01
ACGTcount: A:0.35, C:0.24, G:0.20, T:0.20
Consensus pattern (75 bp):
TGTGCCCAGCACTAGTCGAATAAATCGACAAAGGTTGCACCCAGCGCTAGTCTAATAAACCGACA
AATATAATGG
Found at i:24286992 original size:11 final size:11
Alignment explanation
Indices: 24286969--24287006 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
24286959 TGTTTCTTTT
24286969 ATTTT-ATTATC
1 ATTTTCATT-TC
24286980 ATTTTCATTTC
1 ATTTTCATTTC
*
24286991 ATTTTCATTTT
1 ATTTTCATTTC
24287002 ATTTT
1 ATTTT
24287007 ATTCTAGTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 22 0.88
12 3 0.12
ACGTcount: A:0.21, C:0.11, G:0.00, T:0.68
Consensus pattern (11 bp):
ATTTTCATTTC
Found at i:24288641 original size:51 final size:51
Alignment explanation
Indices: 24288561--24288903 Score: 308
Period size: 51 Copynumber: 6.8 Consensus size: 51
24288551 TATCGATGAA
* * *
24288561 CACGTGTGTAATACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGT
* * * * * * * *
24288612 CACATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCAAGAAGTTTTGAG-
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTG-GT
* * *
24288663 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACTA-TGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA-TATTGGT
* * * * * * *
24288714 TACATGTGTGGTACTAAGTGAAGGCTACTATG-GATACCGAAAAACT-TTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-TATCGATAAA-TATTGGT
* * * * *
24288765 CACGTATGTAGTACTATGTGAAGGCTACTACGT-CAGCTATAAA-ACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-TTGGT
* * *
24288815 CACGTGTGTAGTACTATGTGAAGGCTACTACGTG-AACTG-TAAA-ACTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATC-GATAAATATTGGT
24288864 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
24288904 ATGATAAAAA
Statistics
Matches: 232, Mismatches: 48, Indels: 25
0.76 0.16 0.08
Matches are distributed among these distances:
49 39 0.17
50 53 0.23
51 138 0.59
52 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATATTGGT
Found at i:24288737 original size:102 final size:102
Alignment explanation
Indices: 24288561--24288903 Score: 380
Period size: 102 Copynumber: 3.4 Consensus size: 102
24288551 TATCGATGAA
*
24288561 CACGTGTGTAATACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
**
24288626 TAAGTGAAGGCTACTATGTG-TACC-AAGAAGTTTTGAG-
66 TAAGTGAAGGCTACTATG-GATACCGAA-AAACTTTG-GT
* * * *
24288663 CACGTGTGTAGTACTGTGTGAAAGCTACTACGTGTATCGGTAAACT-ATGGTTACATGTGTGGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAA-TAATGGTCACATGTGTAGTA
24288727 CTAAGTGAAGGCTACTATGGATACCGAAAAACTTTGGT
65 CTAAGTGAAGGCTACTATGGATACCGAAAAACTTTGGT
* * * * * * * *
24288765 CACGTATGTAGTACTATGTGAAGGCTACTACGT-CAGCTATAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA-ATGGTCACATGTGTAGTA
* * * * *
24288828 CTATGTGAAGGCTACTACGTGA-ACTGTAAAAC--TGAT
65 CTAAGTGAAGGCTACTATG-GATACCGAAAAACTTTGGT
*
24288864 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGA
24288904 ATGATAAAAA
Statistics
Matches: 205, Mismatches: 28, Indels: 18
0.82 0.11 0.07
Matches are distributed among these distances:
99 35 0.17
100 3 0.01
101 46 0.22
102 118 0.58
103 3 0.01
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.30
Consensus pattern (102 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGGATACCGAAAAACTTTGGT
Found at i:24299537 original size:22 final size:20
Alignment explanation
Indices: 24299489--24299540 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 20
24299479 TTAAATTAAA
24299489 TGAAGA-AAATTTTATATGC
1 TGAAGAGAAATTTTATATGC
* *
24299508 AGAAGAGAAATTTTAATTATTC
1 TGAAGAGAAATTTT-A-TATGC
24299530 TGAAGAGAAAT
1 TGAAGAGAAAT
24299541 GAAATTTTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
19 5 0.19
20 7 0.26
21 1 0.04
22 14 0.52
ACGTcount: A:0.46, C:0.04, G:0.17, T:0.33
Consensus pattern (20 bp):
TGAAGAGAAATTTTATATGC
Found at i:24308168 original size:20 final size:21
Alignment explanation
Indices: 24308129--24308168 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
24308119 ATTTTTCTAT
**
24308129 CACTTCAATTTTTGCTCTGTC
1 CACTTCAATTCCTGCTCTGTC
24308150 CACTTCAATTCCT-CTCTGT
1 CACTTCAATTCCTGCTCTGT
24308169 GATATCCTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.15, C:0.33, G:0.07, T:0.45
Consensus pattern (21 bp):
CACTTCAATTCCTGCTCTGTC
Found at i:24316959 original size:22 final size:22
Alignment explanation
Indices: 24316931--24316975 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
24316921 AGCATCATTT
24316931 TACCACCATTATATTACTTCTA
1 TACCACCATTATATTACTTCTA
24316953 TACCACCATTATATTACTTCTA
1 TACCACCATTATATTACTTCTA
24316975 T
1 T
24316976 CTGTCACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.27, G:0.00, T:0.42
Consensus pattern (22 bp):
TACCACCATTATATTACTTCTA
Found at i:24318590 original size:125 final size:125
Alignment explanation
Indices: 24318264--24318639 Score: 607
Period size: 125 Copynumber: 3.0 Consensus size: 125
24318254 TTAGAGTTTT
* **
24318264 TAGGTCCTGGAAGAAATAATTTTAAGTTGACGTTTCTGATA-AAATAGTATAAAATCGCTTCTAG
1 TAGGTCATGGAAGAAATAATTTT-TTTTGACGTTTCTGA-ACAAATAGTATAAAATCGCTTCTAG
* *
24318328 CAGGATGCTATTTGAGAAGAATTTGTG-AAATCGCGCCCTAGTGGACGCGCTTTTGCTACAG
64 CAGGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAG
* *
24318389 TAGGTCATGGAAGAAATCA--TTTTTTGACGTTTCTGAACAAATTGTATAAAATCGCTTCTAGCA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAACAAATAGTATAAAATCGCTTCTAGCA
*
24318452 GGATGCTATTTGAGAAGAATTTGTGAAAATCGTGCCCTCGTGGACACGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAG
* *
24318512 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATAAAATCGCTTCTAGGA
1 TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAACAAATAGTATAAAATCGCTTCTAGCA
*
24318577 GGATGCTATTTGAGAAGAATTTATGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAG
66 GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAG
24318637 TAG
1 TAG
24318640 CATGTTTGGG
Statistics
Matches: 233, Mismatches: 14, Indels: 8
0.91 0.05 0.03
Matches are distributed among these distances:
121 1 0.00
122 62 0.27
123 51 0.22
125 119 0.51
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (125 bp):
TAGGTCATGGAAGAAATAATTTTTTTTGACGTTTCTGAACAAATAGTATAAAATCGCTTCTAGCA
GGATGCTATTTGAGAAGAATTTGTGAAAATCGCGCCCTCGTGGACACGCTTTTGCTACAG
Found at i:24319561 original size:23 final size:23
Alignment explanation
Indices: 24319523--24320144 Score: 832
Period size: 23 Copynumber: 27.8 Consensus size: 23
24319513 AGTTTAGGGT
24319523 TTAGGG-TTTTAA-TTAAATTAGG
1 TTAGGGTTTTTAAGTT-AATTAGG
* *
24319545 TTATGG-TTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319567 TTAGAGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
24319590 TTAGAGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319613 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319636 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
24319657 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319680 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
24319703 TTAGGGTTTTTAATTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
24319724 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319747 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
24319770 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319793 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319814 TTAGGGTTTTTAAGTTAACTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
24319837 TTAGGGTTTGTAAGTT-A-TGGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319858 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319879 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319902 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
24319925 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
24319948 CTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
24319969 TTAGGGTTTTTAAGTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24319992 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24320015 TTAGGGTTTTTAAGTTAA--GGG
1 TTAGGGTTTTTAAGTTAATTAGG
* *
24320036 TTAGGGTTCTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
*
24320059 TTAGGGTTTTTAATTTAATTAGG
1 TTAGGGTTTTTAAGTTAATTAGG
* **
24320082 TTAGGGTTTTTAAGTTAA-GAAT
1 TTAGGGTTTTTAAGTTAATTAGG
*
24320104 TTAAGGTTTTTAA-TTAAATTAGG
1 TTAGGGTTTTTAAGTT-AATTAGG
24320127 TTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTTAA
24320145 GGGTATTAAT
Statistics
Matches: 539, Mismatches: 43, Indels: 35
0.87 0.07 0.06
Matches are distributed among these distances:
21 136 0.25
22 39 0.07
23 362 0.67
24 2 0.00
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (23 bp):
TTAGGGTTTTTAAGTTAATTAGG
Found at i:24319671 original size:90 final size:91
Alignment explanation
Indices: 24319523--24320144 Score: 835
Period size: 90 Copynumber: 6.9 Consensus size: 91
24319513 AGTTTAGGGT
* * * *
24319523 TTAGGG-TTTTAATTAAATTAGGTTATGG-TTTTAATTTAATTAGGTTAGAGTTTTTAAGTTAAT
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
* *
24319586 TAGGTTAGAGTTTTTAATTTAATTAGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
*
24319613 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTAATT
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATAGGTTAGGGTTTTTAAGTTAATT
*
24319677 AGGTTAGGGTTTTTAATTTAATTAGG
66 AGGTTAGGGTTTTTAAGTTAATTAGG
* *
24319703 TTAGGGTTTTTAATTTAA--GGGTTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAAT
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
24319766 TAGGTTAGGGTTTTTAAGTTAATTAGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
* * *
24319793 TTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAAGTTAACTAGGTTAGGGTTTGTAAGTT-A-
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
* *
24319854 TGGGTTAGGGTTTTTAAGTTAA--GGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
*
24319879 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
* *
24319944 TAGGCTAGGGTTTTTAAGTTAA--GGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
* *
24319969 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-TAGGTTAGGGTTTTTAAGTTAAT
* * *
24320033 -GGGTTAGGGTTCTTAATTTAATTAGG
65 TAGGTTAGGGTTTTTAAGTTAATTAGG
* ** *
24320059 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAGAATTTAAGGTTTTTAA-TTAAAT
1 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATAGGTTAGGGTTTTTAAGTT-AAT
24320123 TAGGTTAGGGTTTTTAAGTTAA
65 TAGGTTAGGGTTTTTAAGTTAA
24320145 GGGTATTAAT
Statistics
Matches: 481, Mismatches: 38, Indels: 25
0.88 0.07 0.05
Matches are distributed among these distances:
86 19 0.04
88 98 0.20
89 17 0.04
90 299 0.62
91 38 0.08
92 10 0.02
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (91 bp):
TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAATAGGTTAGGGTTTTTAAGTTAATT
AGGTTAGGGTTTTTAAGTTAATTAGG
Found at i:24319689 original size:67 final size:68
Alignment explanation
Indices: 24319523--24320144 Score: 808
Period size: 67 Copynumber: 9.3 Consensus size: 68
24319513 AGTTTAGGGT
* *
24319523 TTAGGG-TTTTAA-TTAAATTAGGTTATGG-TTTTAATTTAATTAGGTTAGAGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTT-AATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA
24319585 TTAGG
65 -TAGG
* *
24319590 TTAGAGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
*
24319654 GGG
66 AGG
*
24319657 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAA-
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
*
24319721 GGG
66 AGG
24319724 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
24319789 TAGG
65 TAGG
* * * *
24319793 TTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAAGTTAACTAGGTTAGGGTTTGTAAGTT-AT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
*
24319855 GGG
66 AGG
* *
24319858 TTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAATTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
24319921 TAGG
65 TAGG
* * *
24319925 TTAGGGTTTTTAAGTTAATTAGGCTAGGGTTTTTAAGTTAA--GGGTTAGGGTTTTTAAGTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
24319988 TAGG
65 TAGG
* * * * *
24319992 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA--GGGTTAGGGTTCTTAATTTAAT
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-
24320055 TAGG
65 TAGG
* * * ** *
24320059 TTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAA-GAATTTAAGGTTTTTAA-TTAAA
1 TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTT-AA
24320122 TTAGG
65 -TAGG
24320127 TTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTTAA
24320145 GGGTATTAAT
Statistics
Matches: 510, Mismatches: 34, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
65 59 0.12
66 2 0.00
67 323 0.63
68 53 0.10
69 73 0.14
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.48
Consensus pattern (68 bp):
TTAGGGTTTTTAAGTTAATTAGGTTAGGGTTTTTAATTTAATTAGGTTAGGGTTTTTAAGTTAAT
AGG
Found at i:24320193 original size:9 final size:9
Alignment explanation
Indices: 24320175--24320211 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
24320165 ATTCTCAAAT
24320175 AATA-TCAA
1 AATATTCAA
24320183 AATATTCAA
1 AATATTCAA
24320192 AATATTCAA
1 AATATTCAA
*
24320201 AATATTTAA
1 AATATTCAA
24320210 AA
1 AA
24320212 ATTTCTATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 4 0.15
9 23 0.85
ACGTcount: A:0.59, C:0.08, G:0.00, T:0.32
Consensus pattern (9 bp):
AATATTCAA
Found at i:24320713 original size:18 final size:18
Alignment explanation
Indices: 24320690--24320729 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
24320680 GACGCAGAAA
*
24320690 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
24320708 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
24320726 AGGA
1 AGGA
24320730 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:24321389 original size:7 final size:7
Alignment explanation
Indices: 24321379--24321403 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
24321369 TTATATACAT
24321379 AATACTA
1 AATACTA
24321386 AATACTA
1 AATACTA
24321393 AATACTA
1 AATACTA
24321400 AATA
1 AATA
24321404 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:24321611 original size:20 final size:20
Alignment explanation
Indices: 24321574--24321611 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
24321564 TTTATTTTAA
*
24321574 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
24321594 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
24321612 TACATCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:24322639 original size:14 final size:11
Alignment explanation
Indices: 24322596--24322635 Score: 64
Period size: 11 Copynumber: 3.6 Consensus size: 11
24322586 AAGAGAATTT
24322596 TTGA-AGGAAA
1 TTGAGAGGAAA
24322606 TTGAGAGGAAA
1 TTGAGAGGAAA
24322617 TTGAGAGGAAA
1 TTGAGAGGAAA
24322628 TTTGAGAG
1 -TTGAGAG
24322636 AGGATTAGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 4 0.14
11 17 0.61
12 7 0.25
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:24328587 original size:48 final size:48
Alignment explanation
Indices: 24328510--24328605 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 48
24328500 TGGGCCGGCA
* *
24328510 TTGGCCCAAACCCACGTGGCCGCAAACTGAACTCGCATGATAAGATTG
1 TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
** * * *
24328558 TTGGCCCAAACACACGAGGTTGCAGACTGAGCTCGCATGATGAGATTG
1 TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
24328606 CAGACTGAGC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 41 1.00
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (48 bp):
TTGGCCCAAACACACGAGGCCGCAAACTGAACTCGCATGATAAGATTG
Found at i:24328613 original size:26 final size:26
Alignment explanation
Indices: 24328577--24328646 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
24328567 ACACACGAGG
24328577 TTGCAGACTGAGCTCGCATGATGAGA
1 TTGCAGACTGAGCTCGCATGATGAGA
24328603 TTGCAGACTGAGCTCGCATGATGAGA
1 TTGCAGACTGAGCTCGCATGATGAGA
24328629 TTGCAGACTGAGCTCGCA
1 TTGCAGACTGAGCTCGCA
24328647 GCTCGCTCGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (26 bp):
TTGCAGACTGAGCTCGCATGATGAGA
Found at i:24328647 original size:13 final size:13
Alignment explanation
Indices: 24328579--24328647 Score: 70
Period size: 13 Copynumber: 5.3 Consensus size: 13
24328569 ACACGAGGTT
24328579 GCAGACTGAGCTC
1 GCAGACTGAGCTC
* *
24328592 GCATGA-TGAGATT
1 GCA-GACTGAGCTC
24328605 GCAGACTGAGCTC
1 GCAGACTGAGCTC
* *
24328618 GCATGA-TGAGATT
1 GCA-GACTGAGCTC
24328631 GCAGACTGAGCTC
1 GCAGACTGAGCTC
24328644 GCAG
1 GCAG
24328648 CTCGCTCGTC
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
12 4 0.09
13 36 0.82
14 4 0.09
ACGTcount: A:0.26, C:0.22, G:0.32, T:0.20
Consensus pattern (13 bp):
GCAGACTGAGCTC
Found at i:24331604 original size:55 final size:55
Alignment explanation
Indices: 24331541--24331670 Score: 140
Period size: 57 Copynumber: 2.3 Consensus size: 55
24331531 TTTTTATAAT
* * *
24331541 ATTATATATTA-TGATT-TTTTTATTCATATAATAATTATATTAAGAATGTTATTAA
1 ATTATATATTATTGATTAATTTTATTCA-ATAATAATTATATTAA-AATATGATTAA
* *
24331596 ATTATATATTATTTTATTAAATTTTATTTAATAATAATTATATTAAAATATGATTAA
1 ATTATATATTA-TTGATT-AATTTTATTCAATAATAATTATATTAAAATATGATTAA
* *
24331653 ATTATTTATT-TTTATTAA
1 ATTATATATTATTGATTAA
24331671 AATATATTTA
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
54 2 0.03
55 17 0.26
57 22 0.34
58 16 0.25
59 8 0.12
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.55
Consensus pattern (55 bp):
ATTATATATTATTGATTAATTTTATTCAATAATAATTATATTAAAATATGATTAA
Found at i:24331671 original size:55 final size:57
Alignment explanation
Indices: 24331558--24331699 Score: 173
Period size: 55 Copynumber: 2.5 Consensus size: 57
24331548 ATTATGATTT
* * *
24331558 TTTTATTCATATAATAATTATATTAAGAATGTTATTAAATTATATATTATTTTATTAAA
1 TTTTATTTA-ATAATAATTATATTAA-AATATGATTAAATTATATATTATTTTATTAAA
*
24331617 TTTTATTTAATAATAATTATATTAAAATATGATTAAATTATTTA-T-TTTTATTAAA
1 TTTTATTTAATAATAATTATATTAAAATATGATTAAATTATATATTATTTTATTAAA
* * *
24331672 ATATATTTAAAAATAAATT-TATTAAAAT
1 TTTTATTTAATAAT-AATTATATTAAAAT
24331700 TTAATAACAA
Statistics
Matches: 75, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
55 30 0.40
56 5 0.07
57 16 0.21
58 16 0.21
59 8 0.11
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (57 bp):
TTTTATTTAATAATAATTATATTAAAATATGATTAAATTATATATTATTTTATTAAA
Found at i:24331887 original size:16 final size:16
Alignment explanation
Indices: 24331866--24331935 Score: 79
Period size: 16 Copynumber: 4.4 Consensus size: 16
24331856 GAAATTACTG
*
24331866 ATTACAACTTTATTCC
1 ATTACAACTATATTCC
24331882 ATTACAACTATATTCC
1 ATTACAACTATATTCC
* * *
24331898 ATTACAGCTCTATTCA
1 ATTACAACTATATTCC
*
24331914 ATTAC-AGTCATATTCC
1 ATTACAACT-ATATTCC
24331930 ATTACA
1 ATTACA
24331936 GTGAACCAAA
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
15 1 0.02
16 43 0.98
ACGTcount: A:0.34, C:0.24, G:0.03, T:0.39
Consensus pattern (16 bp):
ATTACAACTATATTCC
Found at i:24331912 original size:32 final size:32
Alignment explanation
Indices: 24331866--24331936 Score: 90
Period size: 32 Copynumber: 2.2 Consensus size: 32
24331856 GAAATTACTG
* * *
24331866 ATTACAACTTTATTCCATTACAACT-ATATTCC
1 ATTACAGCTCTATTCAATTAC-ACTCATATTCC
*
24331898 ATTACAGCTCTATTCAATTACAGTCATATTCC
1 ATTACAGCTCTATTCAATTACACTCATATTCC
24331930 ATTACAG
1 ATTACAG
24331937 TGAACCAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
31 2 0.06
32 32 0.94
ACGTcount: A:0.34, C:0.24, G:0.04, T:0.38
Consensus pattern (32 bp):
ATTACAGCTCTATTCAATTACACTCATATTCC
Found at i:24332497 original size:4 final size:4
Alignment explanation
Indices: 24332490--24332539 Score: 64
Period size: 4 Copynumber: 12.0 Consensus size: 4
24332480 TATTTGCTTG
* *
24332490 TAAA TAAA TAAAA TAAA TAAA TAAAA TGAA TGAA TAAA TAAA TAAA TAAA
1 TAAA TAAA T-AAA TAAA TAAA T-AAA TAAA TAAA TAAA TAAA TAAA TAAA
24332540 AGCTCTAGTT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
4 34 0.81
5 8 0.19
ACGTcount: A:0.72, C:0.00, G:0.04, T:0.24
Consensus pattern (4 bp):
TAAA
Found at i:24332508 original size:13 final size:13
Alignment explanation
Indices: 24332490--24332540 Score: 77
Period size: 13 Copynumber: 4.0 Consensus size: 13
24332480 TATTTGCTTG
24332490 TAAATAAATAAAA
1 TAAATAAATAAAA
24332503 TAAATAAATAAAA
1 TAAATAAATAAAA
* *
24332516 TGAATGAAT-AAA
1 TAAATAAATAAAA
24332528 TAAATAAATAAAA
1 TAAATAAATAAAA
24332541 GCTCTAGTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
12 10 0.30
13 23 0.70
ACGTcount: A:0.73, C:0.00, G:0.04, T:0.24
Consensus pattern (13 bp):
TAAATAAATAAAA
Found at i:24334155 original size:16 final size:17
Alignment explanation
Indices: 24334124--24334156 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24334114 ACAAAATCAA
24334124 AATTTATTTCCCAATTT
1 AATTTATTTCCCAATTT
24334141 AATTTATTT-CCAATTT
1 AATTTATTTCCCAATTT
24334157 GTTTAACTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTTATTTCCCAATTT
Found at i:24344644 original size:16 final size:16
Alignment explanation
Indices: 24344623--24344656 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
24344613 ATCTGACAAC
24344623 AATCATATAAAGTAGT
1 AATCATATAAAGTAGT
24344639 AATCATATAAAGTAGT
1 AATCATATAAAGTAGT
24344655 AA
1 AA
24344657 ATAATAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.53, C:0.06, G:0.12, T:0.29
Consensus pattern (16 bp):
AATCATATAAAGTAGT
Found at i:24346328 original size:10 final size:10
Alignment explanation
Indices: 24346313--24346349 Score: 56
Period size: 10 Copynumber: 3.7 Consensus size: 10
24346303 GAGTAAGTTT
24346313 AAAAAAATTC
1 AAAAAAATTC
*
24346323 AAAAAAATTG
1 AAAAAAATTC
*
24346333 AAAAAAAATC
1 AAAAAAATTC
24346343 AAAAAAA
1 AAAAAAA
24346350 AATTGGCGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.78, C:0.05, G:0.03, T:0.14
Consensus pattern (10 bp):
AAAAAAATTC
Found at i:24346800 original size:17 final size:17
Alignment explanation
Indices: 24346780--24346812 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
24346770 GTGGTGAGGA
24346780 TTATTTTTCTTTCTAAT
1 TTATTTTTCTTTCTAAT
*
24346797 TTATTTTTTTTTCTAA
1 TTATTTTTCTTTCTAA
24346813 CATTTGGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.09, G:0.00, T:0.73
Consensus pattern (17 bp):
TTATTTTTCTTTCTAAT
Found at i:24347470 original size:6 final size:6
Alignment explanation
Indices: 24347455--24347490 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
24347445 AAAGAAGTTC
24347455 AAAG-A AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A
1 AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA AAAGAA A
24347491 GAGAGTTTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AAAGAA
Found at i:24347521 original size:33 final size:34
Alignment explanation
Indices: 24347484--24347557 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 34
24347474 AGAAAAAGAA
* *
24347484 AAAGAAAGAGAGTTTG-AAAAGAAATCGAGTG-AG
1 AAAGAAAAAGAGTCTGCAAAAGAAA-CGAGTGAAG
24347517 AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
1 AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
24347551 AAAGAAA
1 AAAGAAA
24347558 TCAAGTAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
33 20 0.54
34 17 0.46
ACGTcount: A:0.57, C:0.05, G:0.27, T:0.11
Consensus pattern (34 bp):
AAAGAAAAAGAGTCTGCAAAAGAAACGAGTGAAG
Found at i:24347522 original size:16 final size:17
Alignment explanation
Indices: 24347501--24347559 Score: 52
Period size: 16 Copynumber: 3.5 Consensus size: 17
24347491 GAGAGTTTGA
24347501 AAAGAAATCGAGTG-AG
1 AAAGAAATCGAGTGAAG
** *
24347517 AAAGAAAAAGAGTCTGCA-
1 AAAGAAATCGAG--TGAAG
24347535 AAAGAAA-CGAGTGAAG
1 AAAGAAATCGAGTGAAG
24347551 AAAGAAATC
1 AAAGAAATC
24347560 AAGTAAAAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 9
0.72 0.09 0.19
Matches are distributed among these distances:
15 3 0.09
16 17 0.50
17 4 0.12
18 9 0.26
19 1 0.03
ACGTcount: A:0.56, C:0.08, G:0.25, T:0.10
Consensus pattern (17 bp):
AAAGAAATCGAGTGAAG
Found at i:24355340 original size:25 final size:25
Alignment explanation
Indices: 24355306--24355393 Score: 77
Period size: 25 Copynumber: 3.5 Consensus size: 25
24355296 TGACCCACAG
* * *
24355306 CTCGCGAGAGCATACTGGTTTACAA
1 CTCGTGAGAGCATACCGATTTACAA
* **
24355331 CTCGTGAGAGCAAACCGATTTATTA
1 CTCGTGAGAGCATACCGATTTACAA
* * * *
24355356 CTCATGAGAGCATACCAATTTATAG
1 CTCGTGAGAGCATACCGATTTACAA
*
24355381 CTCGTGTGAGCAT
1 CTCGTGAGAGCAT
24355394 TCATGTAGAA
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (25 bp):
CTCGTGAGAGCATACCGATTTACAA
Found at i:24355868 original size:21 final size:22
Alignment explanation
Indices: 24355827--24355869 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
24355817 GCATGCATAG
*
24355827 GTATTTTGGCTAATGTGGCCAT
1 GTATTTTGGCTAATATGGCCAT
*
24355849 GTATTTTGGTTAA-ATGGCCAT
1 GTATTTTGGCTAATATGGCCAT
24355870 TTGTTTGGCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.21, C:0.12, G:0.26, T:0.42
Consensus pattern (22 bp):
GTATTTTGGCTAATATGGCCAT
Found at i:24362798 original size:23 final size:23
Alignment explanation
Indices: 24362768--24362816 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
24362758 TATGAATTAC
* *
24362768 ATGGAAAT-GTTGTTACATGTTAT
1 ATGGAAATAGATGATACATG-TAT
24362791 ATGGAAATAGATGATACATGTAT
1 ATGGAAATAGATGATACATGTAT
24362814 ATG
1 ATG
24362817 AAACATAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.37, C:0.04, G:0.22, T:0.37
Consensus pattern (23 bp):
ATGGAAATAGATGATACATGTAT
Found at i:24386137 original size:18 final size:19
Alignment explanation
Indices: 24386110--24386145 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
24386100 TCACATGCCA
*
24386110 AAGTGTAAAA-TGATTTTT
1 AAGTGAAAAAGTGATTTTT
24386128 AAGTGAAAAAGTGATTTT
1 AAGTGAAAAAGTGATTTT
24386146 GGCCATATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (19 bp):
AAGTGAAAAAGTGATTTTT
Found at i:24397226 original size:17 final size:17
Alignment explanation
Indices: 24397172--24397226 Score: 92
Period size: 17 Copynumber: 3.2 Consensus size: 17
24397162 GTAGATGATC
24397172 TGGCAAACTCTAAGGTT
1 TGGCAAACTCTAAGGTT
*
24397189 TGGAAAACTCTAAGGTT
1 TGGCAAACTCTAAGGTT
*
24397206 TGGCAAACTCTAGGGTT
1 TGGCAAACTCTAAGGTT
24397223 TGGC
1 TGGC
24397227 GAACCCTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 35 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (17 bp):
TGGCAAACTCTAAGGTT
Found at i:24403801 original size:21 final size:22
Alignment explanation
Indices: 24403772--24403812 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
24403762 AGTTTCTTGA
24403772 CAACATCTA-TCATTGCCTTAT
1 CAACATCTATTCATTGCCTTAT
* *
24403793 CAACTTCTATTCCTTGCCTT
1 CAACATCTATTCATTGCCTT
24403813 GTAGTTTTGT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.22, C:0.32, G:0.05, T:0.41
Consensus pattern (22 bp):
CAACATCTATTCATTGCCTTAT
Found at i:24416927 original size:23 final size:23
Alignment explanation
Indices: 24416901--24416949 Score: 82
Period size: 22 Copynumber: 2.2 Consensus size: 23
24416891 ATTATTTTAT
24416901 AATAATTATATTTTTTTGACAAG
1 AATAATTATATTTTTTTGACAAG
*
24416924 AAT-ATTTTATTTTTTTGACAAG
1 AATAATTATATTTTTTTGACAAG
24416946 AATA
1 AATA
24416950 TTACTAAAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 21 0.88
23 3 0.12
ACGTcount: A:0.39, C:0.04, G:0.08, T:0.49
Consensus pattern (23 bp):
AATAATTATATTTTTTTGACAAG
Found at i:24416937 original size:22 final size:22
Alignment explanation
Indices: 24416909--24416951 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
24416899 ATAATAATTA
24416909 TATTTTTTTGACAAGAATATTT
1 TATTTTTTTGACAAGAATATTT
24416931 TATTTTTTTGACAAGAATATT
1 TATTTTTTTGACAAGAATATT
24416952 ACTAAAACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.05, G:0.09, T:0.53
Consensus pattern (22 bp):
TATTTTTTTGACAAGAATATTT
Found at i:24418131 original size:6 final size:6
Alignment explanation
Indices: 24418120--24418145 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
24418110 TAAATAAGTT
24418120 AAAATA AAAATA AAAATA AAAATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
24418146 CCAAACTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:24425609 original size:12 final size:12
Alignment explanation
Indices: 24425569--24425601 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
24425559 CTGTGTCTCA
24425569 CACACGGCCAAC
1 CACACGGCCAAC
24425581 CACACGGCCAAC
1 CACACGGCCAAC
24425593 CACACGGCC
1 CACACGGCC
24425602 GGCCACACAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.30, C:0.52, G:0.18, T:0.00
Consensus pattern (12 bp):
CACACGGCCAAC
Found at i:24435648 original size:11 final size:11
Alignment explanation
Indices: 24435632--24435658 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24435622 TAGAAATTAG
24435632 TTTGTGAAACT
1 TTTGTGAAACT
24435643 TTTGTGAAACT
1 TTTGTGAAACT
24435654 TTTGT
1 TTTGT
24435659 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:24437191 original size:92 final size:92
Alignment explanation
Indices: 24437055--24437248 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
24437045 TTGATTTTAG
* *
24437055 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
24437119 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
24437146 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
24437211 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
24437239 CAAATTCATA
1 TAAATTCATA
24437249 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:24437296 original size:48 final size:52
Alignment explanation
Indices: 24437226--24437324 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
24437216 AATAATTATT
24437226 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
24437274 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
24437325 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:24437306 original size:17 final size:17
Alignment explanation
Indices: 24437281--24437314 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
24437271 ATAATTTTAA
*
24437281 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
24437298 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
24437315 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:24437331 original size:17 final size:16
Alignment explanation
Indices: 24437286--24437333 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
24437276 TTTAAATTTT
24437286 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
24437303 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
24437317 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
24437334 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:24437512 original size:18 final size:17
Alignment explanation
Indices: 24437484--24437518 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
24437474 ATTATTAAGA
*
24437484 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
24437501 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
24437519 TTATAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:24437518 original size:16 final size:17
Alignment explanation
Indices: 24437484--24437525 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
24437474 ATTATTAAGA
24437484 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA-TATAT
24437501 ATTTTAATTAAA-ATAT
1 ATTTTAATTAAATATAT
24437517 ATTTATAAT
1 ATTT-TAAT
24437526 AATTATGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
16 8 0.35
17 9 0.39
18 6 0.26
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATTTTAATTAAATATAT
Done.