Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 80 of 173
Found at i:24791140 original size:114 final size:115
Alignment explanation
Indices: 24790934--24791186 Score: 293
Period size: 114 Copynumber: 2.2 Consensus size: 115
24790924 TTGAATGCTG
* * *
24790934 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCTTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCTTC
*
24790998 GTGCGAGATACAATCCGGGTTAAGCCCGAAGGCATTCGTGCGAG-ATTAAA
66 GTGCGAGATACAATCCGGGTTAAGCCCGAAGGCATT-GTGCGAGTACTAAA
* * * * **
24791048 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGC-T
* *
24791111 TCGTGCGAGTTA-AATCCGGGTT-AGTCCCGAAGGCATTGTGTGAGTTACTAAA
64 TCGTGCGAGATACAATCCGGGTTAAG-CCCGAAGGCATTGTGCGAG-TACTAAA
* *
24791163 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
24791187 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 15, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
113 9 0.08
114 66 0.56
115 43 0.36
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (115 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCTTC
GTGCGAGATACAATCCGGGTTAAGCCCGAAGGCATTGTGCGAGTACTAAA
Found at i:24791181 original size:75 final size:78
Alignment explanation
Indices: 24790935--24791186 Score: 270
Period size: 75 Copynumber: 3.3 Consensus size: 78
24790925 TGAATGCTGT
* * * * **
24790935 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGC-TT
1 CCGGGCTAAGTCCCGAAGGCATTCGTGC---GAGATTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
24790997 TGTGCGAGATAC--AAT
62 CGTGCGAGTTACTAAAA
*
24791012 CCGGGTTAAG-CCCGAAGGCATTCGTGCGAGATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
* *
24791076 CGAGTTATTAAAT
66 CGAGTTACTAAAA
*
24791089 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TTAAATCCGGGTT-AGTCCCGAAGGCATT-GTG
1 CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
*
24791151 TGAGTTACTAAAA
66 CGAGTTACTAAAA
*
24791164 CCGGGCTATGTCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATT
24791187 TGAACGAGGA
Statistics
Matches: 154, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
73 1 0.01
74 23 0.15
75 45 0.29
76 24 0.16
77 41 0.27
78 20 0.13
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGTCCCGAAGGCATTCGTGCGAGATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTG
CGAGTTACTAAAA
Found at i:24791210 original size:114 final size:113
Alignment explanation
Indices: 24790935--24791221 Score: 271
Period size: 114 Copynumber: 2.5 Consensus size: 113
24790925 TGAATGCTGT
* ** * * * *
24790935 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCTTT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTATATCCGG-TTAAG-TCCCGAAGGCTTC
* *
24790998 GTGCGAGATACAATCCGGGTTAAGCCCGAAGGCATTCGTGCGAGATTAAAT
63 GTGCGAGATACAATCCGGGTTAAGCCCGAAGGCATTCGTGCGAGACTAAAA
* ** * * *
24791049 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCC-GGTTAAGTCCCGAAGGC-TTCG
* *
24791114 TGCGAGTTA-AATCCGGGTT-AGTCCCGAAGGCATT-GTGTGAGTTACTAAAA
64 TGCGAGATACAATCCGGGTTAAG-CCCGAAGGCATTCGTGCGAG--ACTAAAA
* * *
24791164 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTATATCCGGTTAAGTCCCGAAGG
24791222 TACGTGATTT
Statistics
Matches: 144, Mismatches: 21, Indels: 16
0.80 0.12 0.09
Matches are distributed among these distances:
113 9 0.06
114 79 0.55
115 56 0.39
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (113 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTATATCCGGTTAAGTCCCGAAGGCTTCGTG
CGAGATACAATCCGGGTTAAGCCCGAAGGCATTCGTGCGAGACTAAAA
Found at i:24805131 original size:40 final size:40
Alignment explanation
Indices: 24804966--24805225 Score: 289
Period size: 40 Copynumber: 6.6 Consensus size: 40
24804956 TTGAATGCTG
* * * * * *
24804966 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
** * * *
24805006 TCCGGACTAAGAT-CCGAAGGC-TTTGTGCGAGATA-CAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
24805044 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAG-TATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
24805083 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
24805123 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
24805163 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
24805202 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
24805226 TGAACGAGGA
Statistics
Matches: 196, Mismatches: 19, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.01
38 21 0.11
39 81 0.41
40 92 0.47
41 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:24805140 original size:79 final size:77
Alignment explanation
Indices: 24804966--24805225 Score: 290
Period size: 79 Copynumber: 3.3 Consensus size: 77
24804956 TTGAATGCTG
* * * * ** *
24804966 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCTT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGC-GAGT-ATTAAATCCGGGTTAAG-TCCCGAAGGCAT
* *
24805029 TGTGCGAGATACAAA
63 TGTGCGAGTTATAAA
*
24805044 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
24805109 TGCGAGTTATTAAA
65 TGCGAGTTA-TAAA
* * * *
24805123 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTG
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAG-TATTAAATCCGGGTTAAGTCCCGAAGGCATTG
*
24805188 TGTGAGTTACTAAA
65 TGCGAGTTA-TAAA
* *
24805202 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
24805226 TGAACGAGGA
Statistics
Matches: 158, Mismatches: 19, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
76 1 0.01
77 23 0.15
78 32 0.20
79 73 0.46
80 29 0.18
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (77 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCGAGTATTAAATCCGGGTTAAGTCCCGAAGGCATTGT
GCGAGTTATAAA
Found at i:24805245 original size:79 final size:79
Alignment explanation
Indices: 24805019--24805260 Score: 301
Period size: 79 Copynumber: 3.1 Consensus size: 79
24805009 GGACTAAGAT
* *
24805019 CCGAAGGCTTTGTGCGAGATAC-AAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTA-TTAA
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAGTTAA
24805082 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
24805096 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTA
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAGTTA
*
24805161 AATCCGGGTTATGTC
65 AATCCGGGTTAAGTC
* * * * * ** * * *
24805176 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTAT
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAGTTAA
*
24805241 ATCC-GGTTAAATC
66 ATCCGGGTTAAGTC
24805254 CCGAAGG
1 CCGAAGG
24805261 TACGTGATTT
Statistics
Matches: 141, Mismatches: 21, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
77 10 0.07
78 23 0.16
79 80 0.57
80 28 0.20
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTAGTTAA
ATCCGGGTTAAGTC
Found at i:24806819 original size:13 final size:13
Alignment explanation
Indices: 24806801--24806825 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24806791 TAATGGTATA
24806801 TTGAATCCATGAT
1 TTGAATCCATGAT
24806814 TTGAATCCATGA
1 TTGAATCCATGA
24806826 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (13 bp):
TTGAATCCATGAT
Found at i:24808402 original size:47 final size:47
Alignment explanation
Indices: 24808318--24809004 Score: 1203
Period size: 47 Copynumber: 14.6 Consensus size: 47
24808308 TATTTGAATA
24808318 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
24808367 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
24808414 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
24808461 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
24808508 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
24808555 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
24808602 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
24808649 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
24808696 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
24808743 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
24808790 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
24808837 AATGTGAAAGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
24808884 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
24808931 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
24808978 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
24809005 TCCCGAAGGG
Statistics
Matches: 616, Mismatches: 22, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
47 604 0.98
49 12 0.02
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:24809179 original size:37 final size:37
Alignment explanation
Indices: 24809123--24809201 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
24809113 CCGAGCTCTA
* * *
24809123 AAGACCCGATGACTACGTGTGG-GAATTTTGTCTGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
24809160 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
24809197 AAGAC
1 AAGAC
24809202 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 36 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:24824343 original size:4 final size:4
Alignment explanation
Indices: 24824336--24824362 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
24824326 TAAATCAAAA
24824336 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
24824363 AAGGAAAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:24826565 original size:14 final size:14
Alignment explanation
Indices: 24826546--24826573 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24826536 GGGCCTCTTG
24826546 TCATAATTATTTAA
1 TCATAATTATTTAA
24826560 TCATAATTATTTAA
1 TCATAATTATTTAA
24826574 CCCAATATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TCATAATTATTTAA
Found at i:24828389 original size:62 final size:59
Alignment explanation
Indices: 24828315--24828428 Score: 156
Period size: 62 Copynumber: 1.9 Consensus size: 59
24828305 TATTATCTTA
* * *
24828315 ATATTAAATTTAATATAATGTTTATCTTGTAGATAAACATTCTATTAATTTAATAATATTTT
1 ATATTAAATTTAATATAATATTTATC-TG--GACAAACATTATATTAATTTAATAATATTTT
* *
24828377 ATATTAAGTTTAATATAATATTTATCTGGACAAATATTATATTAATTTAATA
1 ATATTAAATTTAATATAATATTTATCTGGACAAACATTATATTAATTTAATA
24828429 TTAAAGTGAT
Statistics
Matches: 47, Mismatches: 5, Indels: 3
0.85 0.09 0.05
Matches are distributed among these distances:
59 21 0.45
61 2 0.04
62 24 0.51
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.48
Consensus pattern (59 bp):
ATATTAAATTTAATATAATATTTATCTGGACAAACATTATATTAATTTAATAATATTTT
Found at i:24830464 original size:12 final size:10
Alignment explanation
Indices: 24830439--24830485 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
24830429 GAACATGAAG
24830439 AATTTTAATT
1 AATTTTAATT
24830449 AATTTTATAGTT
1 AATTTTA-A-TT
*
24830461 AATTTTGATT
1 AATTTTAATT
*
24830471 AATTTTGA-T
1 AATTTTAATT
24830480 AATTTT
1 AATTTT
24830486 TGATAGATTC
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
9 7 0.21
10 17 0.50
11 2 0.06
12 8 0.24
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (10 bp):
AATTTTAATT
Found at i:24839480 original size:44 final size:41
Alignment explanation
Indices: 24839414--24839692 Score: 164
Period size: 41 Copynumber: 6.7 Consensus size: 41
24839404 ATTAACCGTT
*
24839414 ATACGGTGGAATCAGCACTTAGCAACCACCTCATGTTCAAAGG
1 ATACGGTGGAATCAACACTTAGCAACCACCT-AT-TTCAAAGG
* * *
24839457 ATCCCGGTGGAATCAACACTTAGCAACCACCTTATAATC-AATG
1 AT-ACGGTGGAATCAACACTTAGCAACCACC-TAT-TTCAAAGG
* *
24839500 ATACGG-GGAATCAACACATAGCAACC-CCT-TTCACAACAAGG
1 ATACGGTGGAATCAACACTTAGCAACCACCTATT-TC-A-AAGG
* * *
24839541 ATACGGTGGAATCAGCACTTAGCAACCACCTTATAATC-AATG
1 ATACGGTGGAATCAACACTTAGCAACCACC-TAT-TTCAAAGG
* * * *
24839583 ATACGG-GGAATCAGCACATAGCAACC-CCT-TTCACAATCAATG
1 ATACGGTGGAATCAACACTTAGCAACCACCTATT-TC-A--AAGG
* * * * *
24839625 ATACGATGGAATTAGCACTTAGCAACCACCTTATAATC-AATG
1 ATACGGTGGAATCAACACTTAGCAACCACC-TAT-TTCAAAGG
* *
24839667 ATACAG-GGAATCTACACTTAGCAACC
1 ATACGGTGGAATCAACACTTAGCAACC
24839693 CCTTACATTC
Statistics
Matches: 187, Mismatches: 28, Indels: 44
0.72 0.11 0.17
Matches are distributed among these distances:
38 4 0.02
39 2 0.01
40 4 0.02
41 64 0.34
42 47 0.25
43 27 0.14
44 33 0.18
45 4 0.02
46 2 0.01
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.21
Consensus pattern (41 bp):
ATACGGTGGAATCAACACTTAGCAACCACCTATTTCAAAGG
Found at i:24839560 original size:83 final size:84
Alignment explanation
Indices: 24839461--24839696 Score: 393
Period size: 83 Copynumber: 2.8 Consensus size: 84
24839451 CAAAGGATCC
*
24839461 CGGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACC
24839526 CCTTTCACAA-CAAGGATA
66 CCTTTCACAATCAAGGATA
*
24839544 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACC
*
24839609 CCTTTCACAATCAATGATA
66 CCTTTCACAATCAAGGATA
* * * * *
24839628 CGATGGAATTAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCTACACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACC
24839693 CCTT
66 CCTT
24839697 ACATTCAAAG
Statistics
Matches: 143, Mismatches: 9, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
83 73 0.51
84 70 0.49
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACC
CCTTTCACAATCAAGGATA
Found at i:24839678 original size:84 final size:82
Alignment explanation
Indices: 24839464--24839696 Score: 376
Period size: 84 Copynumber: 2.8 Consensus size: 82
24839454 AGGATCCCGG
*
24839464 TGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATC-ACACATAGCAACCCCT
*
24839529 TTCACAACAAGGATACGG
65 TTCACAACAAGGATACGA
24839547 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCA-CACATAGCAACCCCT
*
24839612 TTCACAATCAATGATACGA
65 TTCACAA-CAAGGATACGA
* * *
24839631 TGGAATTAGCACTTAGCAACCACCTTATAATCAATGATACAGGGAATCTACACTTAGCAACCCCT
1 TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATC-ACACATAGCAACCCCT
24839696 T
65 T
24839697 ACATTCAAAG
Statistics
Matches: 141, Mismatches: 6, Indels: 5
0.93 0.04 0.03
Matches are distributed among these distances:
82 1 0.01
83 69 0.49
84 70 0.50
85 1 0.01
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (82 bp):
TGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCACACATAGCAACCCCTT
TCACAACAAGGATACGA
Found at i:24841158 original size:22 final size:21
Alignment explanation
Indices: 24841133--24841176 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
24841123 TGATAAACTT
24841133 TAATATATA-ATTATATTATTTA
1 TAATATATATATTA-ATT-TTTA
*
24841155 TAATTTATATATTAATTTTTA
1 TAATATATATATTAATTTTTA
24841176 T
1 T
24841177 CAACTTAGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 5 0.25
22 11 0.55
23 4 0.20
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (21 bp):
TAATATATATATTAATTTTTA
Found at i:24842688 original size:18 final size:18
Alignment explanation
Indices: 24842665--24842704 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
24842655 TTCTTATCAA
24842665 AAAATAATTAAA-TATTAT
1 AAAATAATTAAATTATT-T
24842683 AAAATAATTAAATTATTT
1 AAAATAATTAAATTATTT
24842701 AAAA
1 AAAA
24842705 ATATGAACGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.81
19 4 0.19
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (18 bp):
AAAATAATTAAATTATTT
Found at i:24842744 original size:12 final size:10
Alignment explanation
Indices: 24842719--24842758 Score: 53
Period size: 10 Copynumber: 3.8 Consensus size: 10
24842709 GAACGTGATG
24842719 AATTTTAATT
1 AATTTTAATT
24842729 AATTTTATAGTT
1 AATTTTA-A-TT
*
24842741 AATTTTGATT
1 AATTTTAATT
24842751 AATTTTAA
1 AATTTTAA
24842759 CTATTTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
10 16 0.62
11 2 0.08
12 8 0.31
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.57
Consensus pattern (10 bp):
AATTTTAATT
Found at i:24849778 original size:26 final size:26
Alignment explanation
Indices: 24849749--24849798 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
24849739 CCACTCAGCA
* *
24849749 GTATCACTTACTTGTAGCACTTAGTG
1 GTATCAATTACTGGTAGCACTTAGTG
* *
24849775 GTATCAATTAGTGGTATCACTTAG
1 GTATCAATTACTGGTAGCACTTAG
24849799 CTCCATGTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (26 bp):
GTATCAATTACTGGTAGCACTTAGTG
Found at i:24849785 original size:13 final size:13
Alignment explanation
Indices: 24849769--24849798 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
24849759 CTTGTAGCAC
24849769 TTAGTGGTATCAA
1 TTAGTGGTATCAA
*
24849782 TTAGTGGTATCAC
1 TTAGTGGTATCAA
24849795 TTAG
1 TTAG
24849799 CTCCATGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (13 bp):
TTAGTGGTATCAA
Found at i:24850237 original size:21 final size:21
Alignment explanation
Indices: 24850211--24850312 Score: 91
Period size: 21 Copynumber: 5.0 Consensus size: 21
24850201 TAAGGGTCTT
24850211 ATATATTTAATTGAGTTTCTC
1 ATATATTTAATTGAGTTTCTC
* *
24850232 ATATATATAATTGAGTTTCTA
1 ATATATTTAATTGAGTTTCTC
* * *
24850253 ATGTATTTAATTGAG-TACTT
1 ATATATTTAATTGAGTTTCTC
*** * **
24850273 A-ATAAAAAATTAAGGGTCTC
1 ATATATTTAATTGAGTTTCTC
24850293 ATATATTTAATTGAGTTTCT
1 ATATATTTAATTGAGTTTCT
24850313 AATGTATGTG
Statistics
Matches: 59, Mismatches: 20, Indels: 4
0.71 0.24 0.05
Matches are distributed among these distances:
19 8 0.14
20 7 0.12
21 44 0.75
ACGTcount: A:0.35, C:0.07, G:0.12, T:0.46
Consensus pattern (21 bp):
ATATATTTAATTGAGTTTCTC
Found at i:24862304 original size:30 final size:29
Alignment explanation
Indices: 24862261--24862381 Score: 149
Period size: 30 Copynumber: 4.2 Consensus size: 29
24862251 TATACAGTAT
*
24862261 CAGT-ACA-GTGTGGGCCTTAGCCCAGTA
1 CAGTAACAGGTGTGGGCCTTAGCCCAATA
24862288 CAGTAACAGCGTGTGGGCCTTAGCCCAATA
1 CAGTAACAG-GTGTGGGCCTTAGCCCAATA
** *
24862318 TGGTAACAGTGTGTGGGCCTTAGACCAATA
1 CAGTAACAG-GTGTGGGCCTTAGCCCAATA
* *
24862348 TAGTAACA-GTGTGGGCCTTAGCCCATTA
1 CAGTAACAGGTGTGGGCCTTAGCCCAATA
24862376 CAGTAA
1 CAGTAA
24862382 TCAGTACAAT
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
27 4 0.05
28 26 0.32
30 52 0.63
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (29 bp):
CAGTAACAGGTGTGGGCCTTAGCCCAATA
Found at i:24862530 original size:26 final size:26
Alignment explanation
Indices: 24862498--24862568 Score: 97
Period size: 26 Copynumber: 2.7 Consensus size: 26
24862488 ATATCACAGT
* *
24862498 AAAGCTGCCAGTAATAGTAACGCAGC
1 AAAGCTGCCAGTAACAGTAACGCAAC
* * *
24862524 AAGGCTGCGAGTAACAATAACGCAAC
1 AAAGCTGCCAGTAACAGTAACGCAAC
24862550 AAAGCTGCCAGTAACAGTA
1 AAAGCTGCCAGTAACAGTA
24862569 TATGTGGCAA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.41, C:0.23, G:0.23, T:0.14
Consensus pattern (26 bp):
AAAGCTGCCAGTAACAGTAACGCAAC
Found at i:24862624 original size:27 final size:27
Alignment explanation
Indices: 24862594--24862738 Score: 195
Period size: 27 Copynumber: 5.4 Consensus size: 27
24862584 CCAGTATATA
*
24862594 TCATTTTACCCTTCGAGGGTATTTCAG
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
24862621 TCATATTACCCTT-TAGGGGTATTTCGG
1 TCATTTTACCCTTCGA-GGGTATTTCGG
*
24862648 TCATTTTACCCTTCGGGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
24862675 TTATTTTACTCTTCGAGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
* *
24862702 CCATTTTACCCTTTGAGGGTATTTCGG
1 TCATTTTACCCTTCGAGGGTATTTCGG
24862729 TCA-TTTACCC
1 TCATTTTACCC
24862739 AAGAATCACA
Statistics
Matches: 102, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
26 8 0.08
27 94 0.92
ACGTcount: A:0.16, C:0.21, G:0.21, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTTCGAGGGTATTTCGG
Found at i:24863417 original size:5 final size:5
Alignment explanation
Indices: 24863405--24863465 Score: 72
Period size: 5 Copynumber: 12.4 Consensus size: 5
24863395 ACACTAGAAT
* *
24863405 GAAGA GGAGA GGAAGA GAAGA GAAGA GAAGA GAAGA GAAGA G-AGG GAAGA
1 GAAGA GAAGA -GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA
*
24863455 G-AGA AAAGA GA
1 GAAGA GAAGA GA
24863466 GGATTCAATA
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
4 6 0.13
5 37 0.79
6 4 0.09
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (5 bp):
GAAGA
Found at i:24871325 original size:42 final size:42
Alignment explanation
Indices: 24871270--24871606 Score: 303
Period size: 42 Copynumber: 8.1 Consensus size: 42
24871260 CAACCACCTT
24871270 ATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTTTC
1 ATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTTTC
* * * * * * **
24871312 ATAATTAAGGATACGATGGAATCAGCACTTATCAATCAAC-TT-
1 ATAATCAATGATACG-GGGAATCAGCACATA-GAAACCCCTTTC
* * **
24871354 ATAGTCAATGATACGGGGAATCATCACATAGCTACCCCTTTC
1 ATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTTTC
* * * * *
24871396 ACAATCAAGGATACGCTGGAATCAGCACTTAGCAACCACC-TT-
1 ATAATCAATGATACG-GGGAATCAGCACATAGAAACC-CCTTTC
*
24871438 ATAATCAATGATACGGGTAATCAGCACATAGAAACCCCTTTC
1 ATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTTTC
* * *
24871480 ACAATCAAGGATACGGTGGAATCAGCACTTAGAAACCACC-TT-
1 ATAATCAATGATACGG-GGAATCAGCACATAGAAACC-CCTTTC
* *
24871522 ATAATCAATGATACGGGGAATCAACACAT-GCAACCCCTTTC
1 ATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTTTC
* * * * * *
24871563 -TGATCAATGATTCGGGGAATCTGCACTTAGCAACCCCTTAC
1 ATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTTTC
24871604 ATA
1 ATA
24871607 CAAAGAATCC
Statistics
Matches: 232, Mismatches: 49, Indels: 28
0.75 0.16 0.09
Matches are distributed among these distances:
39 2 0.01
40 34 0.15
41 55 0.24
42 79 0.34
43 54 0.23
44 8 0.03
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.23
Consensus pattern (42 bp):
ATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTTTC
Found at i:24871362 original size:84 final size:84
Alignment explanation
Indices: 24871245--24871602 Score: 481
Period size: 84 Copynumber: 4.3 Consensus size: 84
24871235 GGATCCCAAC
* *
24871245 GGAATCACCACTTAACAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
* *
24871310 TCATAATTAAGGATACGAT
66 TCACAATCAAGGATACGAT
* * * * * **
24871329 GGAATCAGCACTTATCAATCAACTTATAGTCAATGATACGGGGAATCATCACATAGCTACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
*
24871394 TCACAATCAAGGATACGCT
66 TCACAATCAAGGATACGAT
*
24871413 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGTAATCAGCACATAGAAACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
*
24871478 TCACAATCAAGGATACGGT
66 TCACAATCAAGGATACGAT
* * *
24871497 GGAATCAGCACTTAGAAACCACCTTATAATCAATGATACGGGGAATCAACACAT-GCAACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
** * * *
24871561 TC-TGATCAATGATTCG-G
66 TCACAATCAAGGATACGAT
*
24871578 GGAATCTGCACTTAGCAACC-CCTTA
1 GGAATCAGCACTTAGCAACCACCTTA
24871603 CATACAAAGA
Statistics
Matches: 243, Mismatches: 31, Indels: 4
0.87 0.11 0.01
Matches are distributed among these distances:
80 5 0.02
81 18 0.07
82 10 0.04
83 11 0.05
84 199 0.82
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (84 bp):
GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
TCACAATCAAGGATACGAT
Found at i:24872631 original size:13 final size:13
Alignment explanation
Indices: 24872613--24872645 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
24872603 CCAAATGTCA
24872613 AAATTTTGGAACG
1 AAATTTTGGAACG
24872626 AAATTTTGGAACG
1 AAATTTTGGAACG
24872639 AAATTTT
1 AAATTTT
24872646 CATGAAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36
Consensus pattern (13 bp):
AAATTTTGGAACG
Found at i:24874516 original size:42 final size:42
Alignment explanation
Indices: 24874436--24874517 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
24874426 CGTTTTCTCT
* **
24874436 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
* *
24874478 ATGCTATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
24874518 CACATCGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:24877332 original size:84 final size:84
Alignment explanation
Indices: 24877230--24877590 Score: 536
Period size: 84 Copynumber: 4.3 Consensus size: 84
24877220 AAAGGATCCC
* * * *
24877230 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCAGATAGAAACTC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCC
24877295 CTTTCACAATCAAGGATAT
66 CTTTCACAATCAAGGATAT
* *
24877314 GGTGGAATCAGTACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAACACATAGCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCC
24877379 CTTTCACAATCAAGGATAT
66 CTTTCACAATCAAGGATAT
* * *
24877398 GGTGGAATCAGCACTTAACAACCACCTTATAATCAATGATACGAGGAATTAGA-ACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCA-ACACATAGCAACC
*
24877462 CCTTTCACAATCAAGGATAC
65 CCTTTCACAATCAAGGATAT
*
24877482 GGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACAT-GCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCC
** *
24877546 CTTTC-TGATCAATGAT-T
66 CTTTCACAATCAAGGATAT
24877563 CGG-GGAATCAGCACTTAGCAACC-CCTTA
1 -GGTGGAATCAGCACTTAGCAACCACCTTA
24877591 CATTCAAAGA
Statistics
Matches: 253, Mismatches: 21, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
80 5 0.02
81 19 0.08
82 10 0.04
83 13 0.05
84 205 0.81
85 1 0.00
ACGTcount: A:0.37, C:0.24, G:0.17, T:0.22
Consensus pattern (84 bp):
GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACATAGCAACCC
CTTTCACAATCAAGGATAT
Found at i:24877374 original size:41 final size:41
Alignment explanation
Indices: 24877229--24877590 Score: 340
Period size: 42 Copynumber: 8.7 Consensus size: 41
24877219 CAAAGGATCC
24877229 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATA
1 CGGTGGAATCAGCACTTAGCAACC-CCTTATAATCAATGATA
** * * * *
24877271 CGG-GGAATCAGCAGATAGAAACTCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAAC-CCCTT-ATAATCAATGATA
* *
24877313 TGGTGGAATCAGTACTTAGCAACCACCTTATAATCAATGATA
1 CGGTGGAATCAGCACTTAGCAACC-CCTTATAATCAATGATA
* * * * *
24877355 CAG-GGAATCAACACATAGCAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCCC-TT-ATAATCAATGATA
* *
24877397 TGGTGGAATCAGCACTTAACAACCACCTTATAATCAATGATA
1 CGGTGGAATCAGCACTTAGCAACC-CCTTATAATCAATGATA
* * * * * *
24877439 C-GAGGAATTAGAACATAGCAACCCCTTTCACAATCAAGGATA
1 CGGTGGAATCAGCACTTAGCAACCCC-TT-ATAATCAATGATA
*
24877481 CGGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATA
1 CGGTGGAATCAGCACTTAGCAACC-CCTTATAATCAATGATA
* * * * *
24877523 CGG-GGAATCAACACAT-GCAACCCCTTTCTGATCAATGATT
1 CGGTGGAATCAGCACTTAGCAACCCC-TTATAATCAATGATA
24877563 CGG-GGAATCAGCACTTAGCAACCCCTTA
1 CGGTGGAATCAGCACTTAGCAACCCCTTA
24877591 CATTCAAAGA
Statistics
Matches: 256, Mismatches: 50, Indels: 30
0.76 0.15 0.09
Matches are distributed among these distances:
39 2 0.01
40 38 0.15
41 77 0.30
42 79 0.31
43 56 0.22
44 4 0.02
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.22
Consensus pattern (41 bp):
CGGTGGAATCAGCACTTAGCAACCCCTTATAATCAATGATA
Found at i:24878615 original size:13 final size:13
Alignment explanation
Indices: 24878589--24878623 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
24878579 GCCCAAACGT
24878589 CGAAATTTTGGAA
1 CGAAATTTTGGAA
24878602 CGAAACTTTT-GAA
1 CGAAA-TTTTGGAA
24878615 CGAAATTTT
1 CGAAATTTT
24878624 CACGAAATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 4 0.19
13 13 0.62
14 4 0.19
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.34
Consensus pattern (13 bp):
CGAAATTTTGGAA
Found at i:24879295 original size:30 final size:29
Alignment explanation
Indices: 24879259--24879357 Score: 137
Period size: 30 Copynumber: 3.4 Consensus size: 29
24879249 CAGTATAGTA
*
24879259 TGGGCCTTAGCCCAGTACAGTAACAGCGTG
1 TGGGCCTTAGCCCAATACAGTAACAG-GTG
*
24879289 TGGGCCTTAGCCCAATACGGTAACAGTGTG
1 TGGGCCTTAGCCCAATACAGTAACAG-GTG
* *
24879319 TGTGCCTTAGCCCAATACAGTAATA-GTG
1 TGGGCCTTAGCCCAATACAGTAACAGGTG
24879347 TGGGCCTTAGC
1 TGGGCCTTAGC
24879358 ATATTACAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
28 13 0.21
30 49 0.79
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.24
Consensus pattern (29 bp):
TGGGCCTTAGCCCAATACAGTAACAGGTG
Found at i:24879370 original size:28 final size:28
Alignment explanation
Indices: 24879243--24879357 Score: 133
Period size: 30 Copynumber: 4.0 Consensus size: 28
24879233 GAACCCTATG
*
24879243 CAATACCAGT-ATAGTATGGGCCTTAGCC
1 CAATA-CAGTAATAGTGTGGGCCTTAGCC
* *
24879271 CAGTACAGTAACAGCGTGTGGGCCTTAGCC
1 CAATACAGTAATA--GTGTGGGCCTTAGCC
* *
24879301 CAATACGGTAACAGTGTGTGTGCCTTAGCC
1 CAATACAGTAATAGTGTG-G-GCCTTAGCC
24879331 CAATACAGTAATAGTGTGGGCCTTAGC
1 CAATACAGTAATAGTGTGGGCCTTAGC
24879358 ATATTACAGT
Statistics
Matches: 75, Mismatches: 7, Indels: 10
0.82 0.08 0.11
Matches are distributed among these distances:
27 4 0.05
28 19 0.25
29 2 0.03
30 50 0.67
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.24
Consensus pattern (28 bp):
CAATACAGTAATAGTGTGGGCCTTAGCC
Found at i:24882036 original size:30 final size:30
Alignment explanation
Indices: 24882000--24882088 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
24881990 TATTAGTACA
**
24882000 GTGTGGGCCTTAGCCCAATATGGTAACAGT
1 GTGTGGGCCTTAGCCCAATACAGTAACAGT
*
24882030 GTGTGGGTCTTAGCCCAATACAGTAACAGT
1 GTGTGGGCCTTAGCCCAATACAGTAACAGT
* * *
24882060 -T-TGGGCCTTTGCCCATTACAATAATCAGT
1 GTGTGGGCCTTAGCCCAATACAGTAA-CAGT
24882089 ACAATGCAGT
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
28 19 0.37
29 5 0.10
30 27 0.53
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAATACAGTAACAGT
Found at i:24882074 original size:28 final size:28
Alignment explanation
Indices: 24881997--24882088 Score: 94
Period size: 28 Copynumber: 3.2 Consensus size: 28
24881987 CAGTATTAGT
* **
24881997 ACAGTGTGGGCCTTAGCCCAATATGGTA
1 ACAGTTTGGGCCTTAGCCCAATACAGTA
*
24882025 ACAGTGTGTGGGTCTTAGCCCAATACAGTA
1 ACAGT-T-TGGGCCTTAGCCCAATACAGTA
* * *
24882055 ACAGTTTGGGCCTTTGCCCATTACAATA
1 ACAGTTTGGGCCTTAGCCCAATACAGTA
24882083 ATCAGT
1 A-CAGT
24882089 ACAATGCAGT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
28 24 0.45
29 5 0.09
30 24 0.45
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (28 bp):
ACAGTTTGGGCCTTAGCCCAATACAGTA
Found at i:24882223 original size:26 final size:26
Alignment explanation
Indices: 24882194--24882269 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
24882184 CACCATTATT
*
24882194 GCAGCAAAGCTGCCAGTAATAGTAAC
1 GCAGCAAAGCTGCCAGTAACAGTAAC
* *
24882220 GCAGCAAGGCTGCCAGTAACAATAAC
1 GCAGCAAAGCTGCCAGTAACAGTAAC
*
24882246 GCAGCAAAGCTGCCAATAACAGTA
1 GCAGCAAAGCTGCCAGTAACAGTA
24882270 TATGCGGCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.13
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAACAGTAAC
Found at i:24882484 original size:27 final size:27
Alignment explanation
Indices: 24882438--24882577 Score: 183
Period size: 27 Copynumber: 5.2 Consensus size: 27
24882428 GGTATAACAA
**
24882438 TCATTTTA-CCTTATGGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCGG
*
24882464 TCATTTTACCCTTCGGGGGTATTTCGA
1 TCATTTTACCCTTCGGGGGTATTTCGG
* * *
24882491 TCATTTTAGCTTTCGGGGGTATTTCAG
1 TCATTTTACCCTTCGGGGGTATTTCGG
*
24882518 TCATTTTACCCTTCGAGGGTATTTCGG
1 TCATTTTACCCTTCGGGGGTATTTCGG
* **
24882545 TCATTTTACCCTTCGAGGGTATTTTAG
1 TCATTTTACCCTTCGGGGGTATTTCGG
24882572 TCATTT
1 TCATTT
24882578 GCCCACGAAT
Statistics
Matches: 100, Mismatches: 13, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
26 8 0.08
27 92 0.92
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (27 bp):
TCATTTTACCCTTCGGGGGTATTTCGG
Found at i:24883268 original size:5 final size:5
Alignment explanation
Indices: 24883256--24883298 Score: 68
Period size: 5 Copynumber: 8.4 Consensus size: 5
24883246 ACACTAGAAT
*
24883256 GAAGA GGAGA GGAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GA
1 GAAGA GAAGA -GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GA
24883299 GGGAAGTGAG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
5 31 0.89
6 4 0.11
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (5 bp):
GAAGA
Found at i:24885917 original size:17 final size:19
Alignment explanation
Indices: 24885878--24885918 Score: 52
Period size: 17 Copynumber: 2.3 Consensus size: 19
24885868 TTTCTCCTAA
*
24885878 ATTTTAATTTTATTTAACT
1 ATTTTAATTTTATTGAACT
24885897 -TTTTAA-TTTATTGAA-T
1 ATTTTAATTTTATTGAACT
24885913 ATTTTA
1 ATTTTA
24885919 TACTAATTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 4
0.80 0.04 0.16
Matches are distributed among these distances:
16 1 0.05
17 13 0.65
18 6 0.30
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTTTAATTTTATTGAACT
Found at i:24904438 original size:17 final size:17
Alignment explanation
Indices: 24904416--24904450 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
24904406 GAGAGAAGAA
24904416 AAATAATGAAA-ATAAAT
1 AAATAA-GAAAGATAAAT
24904433 AAATAAGAAAGATAAAT
1 AAATAAGAAAGATAAAT
24904450 A
1 A
24904451 GATGACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (17 bp):
AAATAAGAAAGATAAAT
Found at i:24912177 original size:83 final size:84
Alignment explanation
Indices: 24911984--24912340 Score: 508
Period size: 84 Copynumber: 4.3 Consensus size: 84
24911974 GGATCCCAAC
* *
24911984 GGAATCACCACTTAACAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
* *
24912049 TCATAATTAAGGATACGGT
66 TCACAATCAAGGATACGGT
* * * * *
24912068 GGAATCAGCACTTATCAACCAACTTATAGTCAATGATACGGGGAATCATCACATAGCAA-CCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
*
24912132 TCACAATCAAGGATACGCT
66 TCACAATCAAGGATACGGT
*
24912151 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGTAATCAGCACATAGAAACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
24912216 TCACAATCAAGGATACGGT
66 TCACAATCAAGGATACGGT
* * *
24912235 GGAATCAGCACTTAGAAACCACCTTATAATCAATGATACGGGGAATCAACACAT-GCAACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
** * *
24912299 TC-TGATCAATGATTCGG-
66 TCACAATCAAGGATACGGT
*
24912316 GGAATCTGCACTTAGCAACC-CCTTA
1 GGAATCAGCACTTAGCAACCACCTTA
24912341 CATACAAAGA
Statistics
Matches: 246, Mismatches: 26, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
80 5 0.02
81 18 0.07
82 11 0.04
83 85 0.35
84 127 0.52
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (84 bp):
GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
TCACAATCAAGGATACGGT
Found at i:24912218 original size:167 final size:165
Alignment explanation
Indices: 24911984--24912340 Score: 529
Period size: 167 Copynumber: 2.2 Consensus size: 165
24911974 GGATCCCAAC
* *
24911984 GGAATCACCACTTAACAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
* * ** *
24912049 TCATAATTAAGGATACGGTGGAATCAGCACTTATCAACCAACTTATAGTCAATGATACGGGGAAT
66 TCACAATCAAGGATACGGTGGAATCAGCACTTAGAAACCAACTTATAATCAATGATACGGGGAAT
* *
24912114 CATCACATAGCAA-CCCTTTCACAATCAAGGATACGCT
131 CAACACAT-GCAACCCCTTTC-CAATCAAGGATACG-G
*
24912151 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGTAATCAGCACATAGAAACCCCTT
1 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
*
24912216 TCACAATCAAGGATACGGTGGAATCAGCACTTAGAAACCACCTTATAATCAATGATACGGGGAAT
66 TCACAATCAAGGATACGGTGGAATCAGCACTTAGAAACCAACTTATAATCAATGATACGGGGAAT
** * *
24912281 CAACACATGCAACCCCTTTCTGATCAATGATTCGG
131 CAACACATGCAACCCCTTTCCAATCAAGGATACGG
*
24912316 GGAATCTGCACTTAGCAACC-CCTTA
1 GGAATCAGCACTTAGCAACCACCTTA
24912341 CATACAAAGA
Statistics
Matches: 173, Mismatches: 16, Indels: 5
0.89 0.08 0.03
Matches are distributed among these distances:
164 5 0.03
165 19 0.11
166 14 0.08
167 135 0.78
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (165 bp):
GGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGAAACCCCTT
TCACAATCAAGGATACGGTGGAATCAGCACTTAGAAACCAACTTATAATCAATGATACGGGGAAT
CAACACATGCAACCCCTTTCCAATCAAGGATACGG
Found at i:24913368 original size:13 final size:13
Alignment explanation
Indices: 24913350--24913382 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
24913340 CCAAATGTCA
24913350 AAATTTTGGAACG
1 AAATTTTGGAACG
24913363 AAATTTTGGAACG
1 AAATTTTGGAACG
24913376 AAATTTT
1 AAATTTT
24913383 CATGAAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.06, G:0.18, T:0.36
Consensus pattern (13 bp):
AAATTTTGGAACG
Found at i:24915252 original size:42 final size:42
Alignment explanation
Indices: 24915172--24915253 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 42
24915162 CGTTTTCTCT
* **
24915172 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
* *
24915214 ATGCTATAGCCCAGCTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
24915254 CACATCGATG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
42 32 0.94
43 2 0.06
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.32
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:24918124 original size:84 final size:83
Alignment explanation
Indices: 24917961--24918312 Score: 500
Period size: 84 Copynumber: 4.3 Consensus size: 83
24917951 AAAGGATCCC
* * * *
24917961 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAATCAGCAGATAGAAACTCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAATCAACACATAGCAACCCC
24918026 TTTCACAATCAAGGATAT
66 TTTCACAATCAAGGATAT
*
24918044 GGTGGAATCAGTACTTAGCAACCACCTTATAATCAATGATACAGGGAATCAACACATAGCAACCC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC-GGGAATCAACACATAGCAACCC
24918109 CTTTCACAATCAAGGATAT
65 CTTTCACAATCAAGGATAT
* *
24918128 GGTGGAATCAGCACTTAACAACCACCTTATAATCAATGATACGAGGAATTAGA-ACATAGCAACC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACG-GGAATCA-ACACATAGCAACC
*
24918192 CCTTTCACAATCAAGGATAC
64 CCTTTCACAATCAAGGATAT
*
24918212 GGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAACACAT-GCAA-CC
1 GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC-GGGAATCAACACATAGCAACCC
** *
24918275 CTTTC-TGATCAATGAT-T
65 CTTTCACAATCAAGGATAT
*
24918292 CGG-GGAATCTGCACTTAGCAA
1 -GGTGGAATCAGCACTTAGCAA
24918313 AAGTGTGTAG
Statistics
Matches: 245, Mismatches: 18, Indels: 15
0.88 0.06 0.05
Matches are distributed among these distances:
80 16 0.07
81 10 0.04
82 7 0.03
83 47 0.19
84 163 0.67
85 2 0.01
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (83 bp):
GGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGAATCAACACATAGCAACCCC
TTTCACAATCAAGGATAT
Found at i:24918296 original size:39 final size:41
Alignment explanation
Indices: 24917964--24918300 Score: 283
Period size: 42 Copynumber: 8.1 Consensus size: 41
24917954 GGATCCCGGT
* *
24917964 GGAATCAGCACTTAGCAACCACCTTATAATCAATGATAC-G
1 GGAATCAACACATAGCAACCACCTTATAATCAATGATACGG
* * * * * * *
24918004 GGAATCAGCAGATAGAAACTC-CTTTCACAATCAAGGATATGG
1 GGAATCAACACATAGCAAC-CACCTT-ATAATCAATGATACGG
** * *
24918046 TGGAATCAGTACTTAGCAACCACCTTATAATCAATGATACAG
1 -GGAATCAACACATAGCAACCACCTTATAATCAATGATACGG
* * *
24918088 GGAATCAACACATAGCAACC-CCTTTCACAATCAAGGATATGG
1 GGAATCAACACATAGCAACCACC-TT-ATAATCAATGATACGG
* * * *
24918130 TGGAATCAGCACTTAACAACCACCTTATAATCAATGATACGA
1 -GGAATCAACACATAGCAACCACCTTATAATCAATGATACGG
* * *
24918172 GGAATTAGA-ACATAGCAACC-CCTTTCACAATCAAGGATACGG
1 GGAATCA-ACACATAGCAACCACC-TT-ATAATCAATGATACGG
*
24918214 TGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGG
1 -GGAATCAACACATAGCAACCACCTTATAATCAATGATACGG
* * * *
24918256 GGAATCAACACAT-GCAACC-CTTTCTGATCAATGATTCGG
1 GGAATCAACACATAGCAACCACCTTATAATCAATGATACGG
24918295 GGAATC
1 GGAATC
24918301 TGCACTTAGC
Statistics
Matches: 236, Mismatches: 46, Indels: 31
0.75 0.15 0.10
Matches are distributed among these distances:
39 22 0.09
40 29 0.12
41 60 0.25
42 66 0.28
43 55 0.23
44 4 0.02
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (41 bp):
GGAATCAACACATAGCAACCACCTTATAATCAATGATACGG
Found at i:24922294 original size:27 final size:27
Alignment explanation
Indices: 24922264--24922468 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
24922254 ATATTAAGTC
* *
24922264 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
24922291 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
24922319 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
24922346 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
24922373 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
24922400 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
24922427 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
24922454 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24922469 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.83
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24922403 original size:54 final size:54
Alignment explanation
Indices: 24922264--24922467 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
24922254 ATATTAAGTC
* * * **
24922264 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
24922319 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
24922373 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
24922427 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
24922468 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:24922433 original size:81 final size:81
Alignment explanation
Indices: 24922318--24922467 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
24922308 ATAATCAAAC
* * * * * *
24922318 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
24922383 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
24922399 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
24922464 GTGC
66 GTGC
24922468 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:24930438 original size:27 final size:27
Alignment explanation
Indices: 24930408--24930612 Score: 205
Period size: 27 Copynumber: 7.6 Consensus size: 27
24930398 ATATTAAGTC
* *
24930408 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
24930435 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
24930463 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
24930490 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
24930517 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
24930544 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
** *
24930571 CGCACACTTAGTGCTACATAGCCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
24930598 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
24930613 GTACAATTTA
Statistics
Matches: 155, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
27 129 0.83
28 26 0.17
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:24930547 original size:54 final size:54
Alignment explanation
Indices: 24930408--24930611 Score: 257
Period size: 54 Copynumber: 3.8 Consensus size: 54
24930398 ATATTAAGTC
* * * **
24930408 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* *
24930463 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
24930517 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
* *
24930571 CGCACACTTAGTGCTACATAGCCAAATCGCACACTTAGTGC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGC
24930612 TGTACAATTT
Statistics
Matches: 128, Mismatches: 19, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
53 1 0.01
54 80 0.62
55 47 0.37
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:24930577 original size:81 final size:81
Alignment explanation
Indices: 24930462--24930611 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
24930452 ATAATCAAAC
* * * * * *
24930462 TCGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
24930527 GTGCATCATTTTCATT
66 GTGCATCATTTTCATT
* *
24930543 TCGCACACTTAGTGCAACATGGTCAAATCGCACACTTAGTGCTACATAGCCAAATCGCACACTTA
1 TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
24930608 GTGC
66 GTGC
24930612 TGTACAATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.27
Consensus pattern (81 bp):
TCGCACACTTAGTGCAACATAGTCAAATCGCACACTTAGTGCCACATAGCCAAATCGCACACTTA
GTGCATCATTTTCATT
Found at i:24933690 original size:30 final size:30
Alignment explanation
Indices: 24933654--24933742 Score: 110
Period size: 30 Copynumber: 3.0 Consensus size: 30
24933644 TATTAGTACA
**
24933654 GTGTGGGCCTTAGCCCAATATGGTAACAGT
1 GTGTGGGCCTTAGCCCAATACAGTAACAGT
*
24933684 GTGTGGGTCTTAGCCCAATACAGTAACAGT
1 GTGTGGGCCTTAGCCCAATACAGTAACAGT
* *
24933714 -T-TGGGCCTTTGCCCATTACAGTAATCAGT
1 GTGTGGGCCTTAGCCCAATACAGTAA-CAGT
24933743 ACAATGCAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
28 20 0.38
29 5 0.10
30 27 0.52
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (30 bp):
GTGTGGGCCTTAGCCCAATACAGTAACAGT
Found at i:24933728 original size:28 final size:28
Alignment explanation
Indices: 24933651--24933742 Score: 103
Period size: 28 Copynumber: 3.2 Consensus size: 28
24933641 CAGTATTAGT
* **
24933651 ACAGTGTGGGCCTTAGCCCAATATGGTA
1 ACAGTTTGGGCCTTAGCCCAATACAGTA
*
24933679 ACAGTGTGTGGGTCTTAGCCCAATACAGTA
1 ACAGT-T-TGGGCCTTAGCCCAATACAGTA
* *
24933709 ACAGTTTGGGCCTTTGCCCATTACAGTA
1 ACAGTTTGGGCCTTAGCCCAATACAGTA
24933737 ATCAGT
1 A-CAGT
24933743 ACAATGCAGT
Statistics
Matches: 54, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
28 25 0.46
29 5 0.09
30 24 0.44
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (28 bp):
ACAGTTTGGGCCTTAGCCCAATACAGTA
Found at i:24933876 original size:26 final size:26
Alignment explanation
Indices: 24933847--24933922 Score: 116
Period size: 26 Copynumber: 2.9 Consensus size: 26
24933837 CACCATTATT
*
24933847 GCAGCAAAGCTGCCAGTAATAGTAAC
1 GCAGCAAAGCTGCCAGTAACAGTAAC
* *
24933873 GCAGCAAGGCTGCCAGTAACAATAAC
1 GCAGCAAAGCTGCCAGTAACAGTAAC
*
24933899 GCAGCAAAGCTGCCAATAACAGTA
1 GCAGCAAAGCTGCCAGTAACAGTA
24933923 TATGCGGCAA
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.13
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAACAGTAAC
Found at i:24934137 original size:27 final size:26
Alignment explanation
Indices: 24934091--24934230 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
24934081 GGTATAACAA
*
24934091 TCATTTTA-CCTTATGGGGTATTTCGG
1 TCATTTTACCCTT-CGGGGTATTTCGG
*
24934117 TCATTTTACCCTTCAGGGGTATTTCGA
1 TCATTTTACCCTTC-GGGGTATTTCGG
* * *
24934144 TCATTTTAGCTTTCGGGGGTATTTCAG
1 TCATTTTACCCTTC-GGGGTATTTCGG
24934171 TCATTTTACCCTTCGAGGGTATTTCGG
1 TCATTTTACCCTTCG-GGGTATTTCGG
**
24934198 TCATTTTACCCTTCGAGGGTATTTTAG
1 TCATTTTACCCTTCG-GGGTATTTCGG
24934225 TCATTT
1 TCATTT
24934231 GCCCACGAAT
Statistics
Matches: 99, Mismatches: 12, Indels: 5
0.85 0.10 0.04
Matches are distributed among these distances:
26 9 0.09
27 90 0.91
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (26 bp):
TCATTTTACCCTTCGGGGTATTTCGG
Found at i:24934167 original size:54 final size:54
Alignment explanation
Indices: 24934090--24934230 Score: 187
Period size: 54 Copynumber: 2.6 Consensus size: 54
24934080 CGGTATAACA
** *
24934090 ATCATTTTA-CCTTATGGGGTATTTCGGTCATTTTACCCTTC-AGGGGTATTTCG
1 ATCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGA-GGGTATTTCG
* *
24934143 ATCATTTTAGCTTTCGGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
1 ATCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
* * *
24934197 GTCATTTTACCCTTCGAGGGTATTTTAGTCATTT
1 ATCATTTTACCCTTCGGGGGTATTTCAGTCATTT
24934231 GCCCACGAAT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
53 9 0.12
54 67 0.87
55 1 0.01
ACGTcount: A:0.17, C:0.18, G:0.21, T:0.44
Consensus pattern (54 bp):
ATCATTTTACCCTTCGGGGGTATTTCAGTCATTTTACCCTTCGAGGGTATTTCG
Found at i:24934932 original size:5 final size:5
Alignment explanation
Indices: 24934909--24934951 Score: 59
Period size: 5 Copynumber: 8.4 Consensus size: 5
24934899 ACACTAGAAT
* *
24934909 GAAGA GGAGA GGAAAA GAAGA GAAGA GAAGA GAAGA GAAGA GA
1 GAAGA GAAGA -GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GA
24934952 GGGAAGCGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 30 0.91
6 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.42, T:0.00
Consensus pattern (5 bp):
GAAGA
Found at i:24939985 original size:778 final size:778
Alignment explanation
Indices: 24938491--24940047 Score: 3053
Period size: 778 Copynumber: 2.0 Consensus size: 778
24938481 AATTTGTCAA
24938491 AAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGTATAATTGAGTTGGGCTCCCGTCAAG
1 AAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGTATAATTGAGTTGGGCTCCCGTCAAG
24938556 GTTATACTTGCATAGTAAATAGGGTGGAACACTTTATTTTTTCTTTGACCCATCACAGCTCTAAC
66 GTTATACTTGCATAGTAAATAGGGTGGAACACTTTATTTTTTCTTTGACCCATCACAGCTCTAAC
*
24938621 AGAATAATCACTTGCATTGCACATGAACTCAAAAGGTGTGCTCCAATCGAGTGTAATGATTATTG
131 AGAATAATCACTTGCATTGCACATGAACTCAAAAGGTGTGCTCCAATCGAGAGTAATGATTATTG
*
24938686 GTGCTGAGATTAACTATTTTTTCAGCTCTTCAAAAGCTTCTAAACATACTTTGTTGAAATCAAAC
196 GTGCTGAGATTAACTATTTTTTCAACTCTTCAAAAGCTTCTAAACATACTTTGTTGAAATCAAAC
24938751 ACTGTATCCTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTCAAGAGATCTTTGATAAACCT
261 ACTGTATCCTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTCAAGAGATCTTTGATAAACCT
24938816 TCGGTAAAAACTGGCATGGCCTAAGAAACTTCTGACTCCTTTCACATTAATTGGGGTCAGTAATC
326 TCGGTAAAAACTGGCATGGCCTAAGAAACTTCTGACTCCTTTCACATTAATTGGGGTCAGTAATC
24938881 TTTCAATTACGTCCACCTTTGCTTTATCGACTTCAATTCCTTTCTTTGAGATCTTATGACCTAAG
391 TTTCAATTACGTCCACCTTTGCTTTATCGACTTCAATTCCTTTCTTTGAGATCTTATGACCTAAG
24938946 ACAATCCCTTCCTTGACCATAAAATGACATTTTTCCCAATTAATGACAAGGTTCGTCTCTTCGCA
456 ACAATCCCTTCCTTGACCATAAAATGACATTTTTCCCAATTAATGACAAGGTTCGTCTCTTCGCA
24939011 TCCCTGCAGTACCTTAGCCAAATTACTCAAATAGATATCATAAGTGTTACCAAAAATAGAAAAAT
521 TCCCTGCAGTACCTTAGCCAAATTACTCAAATAGATATCATAAGTGTTACCAAAAATAGAAAAAT
24939076 AATCCATGAAAACCTCAACAAAATTTTTGACCATATCAGTAAATATTGTCATCATGCATCGTTGA
586 AATCCATGAAAACCTCAACAAAATTTTTGACCATATCAGTAAATATTGTCATCATGCATCGTTGA
*
24939141 AAAGTTGCAAGTGCATTGTATAAACCAAAAGGTATTCGCCTAAAAGAAAATGTACCGTATGGACA
651 AAAGTTGCAAGTGCATTGAATAAACCAAAAGGTATTCGCCTAAAAGAAAATGTACCGTATGGACA
24939206 ACTAAAGGTTGTTTTATGTTGGTCCTCTGAGGCTGCAACTATTTGGTTATATCCCGAATAGCC
716 ACTAAAGGTTGTTTTATGTTGGTCCTCTGAGGCTGCAACTATTTGGTTATATCCCGAATAGCC
24939269 AAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGTATAATTGAGTTGGGCTCCCGTCAAG
1 AAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGTATAATTGAGTTGGGCTCCCGTCAAG
*
24939334 GTTATACTTGCATAGTAAATAGGGTGGAACACTTTATTTTTTCTTTGACCTATCACAGCTCTAAC
66 GTTATACTTGCATAGTAAATAGGGTGGAACACTTTATTTTTTCTTTGACCCATCACAGCTCTAAC
24939399 AGAATAATCACTTGCATTGCACATGAACTCAAAAGGTGTGCTCCAATCGAGAGTAATGATTATTG
131 AGAATAATCACTTGCATTGCACATGAACTCAAAAGGTGTGCTCCAATCGAGAGTAATGATTATTG
24939464 GTGCTGAGATTAACTATTTTTTCAACTCTTCAAAAGCTTCTAAACATACTTTGTTGAAATCAAAC
196 GTGCTGAGATTAACTATTTTTTCAACTCTTCAAAAGCTTCTAAACATACTTTGTTGAAATCAAAC
24939529 ACTGTATCCTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTCAAGAGATCTTTGATAAACCT
261 ACTGTATCCTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTCAAGAGATCTTTGATAAACCT
24939594 TCGGTAAAAACTGGCATGGCCTAAGAAACTTCTGACTCCTTTCACATTAATTGGGGTCAGTAATC
326 TCGGTAAAAACTGGCATGGCCTAAGAAACTTCTGACTCCTTTCACATTAATTGGGGTCAGTAATC
24939659 TTTCAATTACGTCCACCTTTGCTTTATCGACTTCAATTCCTTTCTTTGAGATCTTATGACCTAAG
391 TTTCAATTACGTCCACCTTTGCTTTATCGACTTCAATTCCTTTCTTTGAGATCTTATGACCTAAG
24939724 ACAATCCCTTCCTTGACCATAAAATGACATTTTTCCCAATTAATGACAAGGTTCGTCTCTTCGCA
456 ACAATCCCTTCCTTGACCATAAAATGACATTTTTCCCAATTAATGACAAGGTTCGTCTCTTCGCA
24939789 TCCCTGCAGTACCTTAGCCAAATTACTCAAATAGATATCATAAGTGTTACCAAAAATAGAAAAAT
521 TCCCTGCAGTACCTTAGCCAAATTACTCAAATAGATATCATAAGTGTTACCAAAAATAGAAAAAT
24939854 AATCCATGAAAACCTCAACAAAATTTTTGACCATATCAGTAAATATTGTCATCATGCATCGTTGA
586 AATCCATGAAAACCTCAACAAAATTTTTGACCATATCAGTAAATATTGTCATCATGCATCGTTGA
24939919 AAAGTTGCAAGTGCATTGCAAT-AACCAAAAGGTATTCGCCTAAAAGAAAATGTACCGTATGGAC
651 AAAGTTGCAAGTGCATTG-AATAAACCAAAAGGTATTCGCCTAAAAGAAAATGTACCGTATGGAC
*
24939983 AACTAAAGGTTGTTTTATGTTGGTCCTCTGAGGCTGCAGCTATTTGGTTATATCCCGAATAGCC
715 AACTAAAGGTTGTTTTATGTTGGTCCTCTGAGGCTGCAACTATTTGGTTATATCCCGAATAGCC
24940047 A
1 A
24940048 TCTAAAAAAT
Statistics
Matches: 773, Mismatches: 5, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
778 771 1.00
779 2 0.00
ACGTcount: A:0.32, C:0.20, G:0.15, T:0.32
Consensus pattern (778 bp):
AAGCAAAAACTATAGCAAATAGTTCTTTTTCAATTATCGTATAATTGAGTTGGGCTCCCGTCAAG
GTTATACTTGCATAGTAAATAGGGTGGAACACTTTATTTTTTCTTTGACCCATCACAGCTCTAAC
AGAATAATCACTTGCATTGCACATGAACTCAAAAGGTGTGCTCCAATCGAGAGTAATGATTATTG
GTGCTGAGATTAACTATTTTTTCAACTCTTCAAAAGCTTCTAAACATACTTTGTTGAAATCAAAC
ACTGTATCCTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTCAAGAGATCTTTGATAAACCT
TCGGTAAAAACTGGCATGGCCTAAGAAACTTCTGACTCCTTTCACATTAATTGGGGTCAGTAATC
TTTCAATTACGTCCACCTTTGCTTTATCGACTTCAATTCCTTTCTTTGAGATCTTATGACCTAAG
ACAATCCCTTCCTTGACCATAAAATGACATTTTTCCCAATTAATGACAAGGTTCGTCTCTTCGCA
TCCCTGCAGTACCTTAGCCAAATTACTCAAATAGATATCATAAGTGTTACCAAAAATAGAAAAAT
AATCCATGAAAACCTCAACAAAATTTTTGACCATATCAGTAAATATTGTCATCATGCATCGTTGA
AAAGTTGCAAGTGCATTGAATAAACCAAAAGGTATTCGCCTAAAAGAAAATGTACCGTATGGACA
ACTAAAGGTTGTTTTATGTTGGTCCTCTGAGGCTGCAACTATTTGGTTATATCCCGAATAGCC
Found at i:24950117 original size:17 final size:17
Alignment explanation
Indices: 24950095--24950129 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
24950085 GAGAGAAGAA
24950095 AAATAATGAAA-ATAAAT
1 AAATAA-GAAAGATAAAT
24950112 AAATAAGAAAGATAAAT
1 AAATAAGAAAGATAAAT
24950129 A
1 A
24950130 GATGACTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 13 0.76
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (17 bp):
AAATAAGAAAGATAAAT
Found at i:24977041 original size:25 final size:25
Alignment explanation
Indices: 24977013--24977122 Score: 139
Period size: 25 Copynumber: 4.4 Consensus size: 25
24977003 AGCTTATCGG
*
24977013 TTTACAGCTTGTGAGAGCATACCGA
1 TTTACAGCTCGTGAGAGCATACCGA
* * *
24977038 TTTACAACTTGTGAGAGCATACCAA
1 TTTACAGCTCGTGAGAGCATACCGA
* * *
24977063 ATTACAGGTCGTGAGAGCATACCGG
1 TTTACAGCTCGTGAGAGCATACCGA
*
24977088 TTTACAGCTCGAGAGAGCATACCGA
1 TTTACAGCTCGTGAGAGCATACCGA
*
24977113 TTCACAGCTC
1 TTTACAGCTC
24977123 ATATGAGCAT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 72 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (25 bp):
TTTACAGCTCGTGAGAGCATACCGA
Found at i:24986019 original size:51 final size:51
Alignment explanation
Indices: 24985953--24986081 Score: 168
Period size: 51 Copynumber: 2.5 Consensus size: 51
24985943 ATGATCATAA
* *
24985953 AAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGAATCTTAT
1 AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
* * ** * * *
24986004 AAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAG
1 AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
*
24986055 AAGATATGATATTATATTCTTAGAGAT
1 AAGATATGATATTATAATCTTAGAGAT
24986082 TTGATGGTAG
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (51 bp):
AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
Found at i:24989032 original size:51 final size:51
Alignment explanation
Indices: 24988966--24989094 Score: 168
Period size: 51 Copynumber: 2.5 Consensus size: 51
24988956 ATGATCATAA
* *
24988966 AAGATATGATATTATAATCTTAGAGATCTTAGATATGATATGGAATCTTAT
1 AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
* * ** * * *
24989017 AAGATATTATTTTATAAGATTACATATCTTAGATAAGATATGTAATCTTAG
1 AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
*
24989068 AAGATATGATATTATATTCTTAGAGAT
1 AAGATATGATATTATAATCTTAGAGAT
24989095 TTGATGGTAG
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 62 1.00
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (51 bp):
AAGATATGATATTATAATCTTAGAGATCTTAGATAAGATATGGAATCTTAG
Found at i:24989803 original size:51 final size:51
Alignment explanation
Indices: 24989687--24989815 Score: 159
Period size: 51 Copynumber: 2.5 Consensus size: 51
24989677 CTACCATCAA
* * * *
24989687 ATCTCTAAGAATATAATATCATATCTTCTAAGATTACATATCTTATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTATAAAATTACATATCATATCTAAG
* * ** * * *
24989738 ATATGTAATCTTATAAAATAATATCTTATAAAATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTATAAAATTACATATCATATCTAAG
24989789 ATCTCTAAGATTATAATATCATATCTT
1 ATCTCTAAGATTATAATATCATATCTT
24989816 TTATGATCAT
Statistics
Matches: 61, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
51 61 1.00
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.40
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATCATATCTTATAAAATTACATATCATATCTAAG
Found at i:24990466 original size:51 final size:51
Alignment explanation
Indices: 24990367--24990499 Score: 158
Period size: 51 Copynumber: 2.6 Consensus size: 51
24990357 CCATCAAATC
* * *
24990367 TCTAAGAATATAATATAATATCTTCTAAGATTCCATATCTTAGATAAGATA
1 TCTAAGATTATAATATAATATCTTATAAGATTCCATATCATAGATAAGATA
* ** * ** *
24990418 TGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAGATC
1 TCTAAGATTATAATATAATATCTTATAAGATTCCATATCATAGATAAGATA
* *
24990469 TCTAAGATTATAATATCATATCTTTTAAGAT
1 TCTAAGATTATAATATAATATCTTATAAGAT
24990500 CATGTTTCCA
Statistics
Matches: 66, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
51 66 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.40
Consensus pattern (51 bp):
TCTAAGATTATAATATAATATCTTATAAGATTCCATATCATAGATAAGATA
Found at i:24992918 original size:200 final size:200
Alignment explanation
Indices: 24992575--24992970 Score: 756
Period size: 200 Copynumber: 2.0 Consensus size: 200
24992565 TGCCTTGGAA
24992575 GAGTTCTTAAGGAATCCACATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACGAGCGAATCGCC
1 GAGTTCTTAAGGAATCCACATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACGAGCGAATCGCC
*
24992640 TAAGGCCGCACGGATCGCGAGACGAAAGGTCTAGCCCCGTGACAAGTGGTACCAGAGCTAGAGTT
66 TAAGGCCACACGGATCGCGAGACGAAAGGTCTAGCCCCGTGACAAGTGGTACCAGAGCTAGAGTT
24992705 CGAACCAAGAAGTATCCGAGCTATTGGTTCAAAGGCACTGTTGGGATGTCGAAAGAAGAGTTCGA
131 CGAACCAAGAAGTATCCGAGCTATTGGTTCAAAGGCACTGTTGGGATGTCGAAAGAAGAGTTCGA
24992770 AGGAG
196 AGGAG
**
24992775 GAGTTCTTAAGGAATCTTCATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACGAGCGAATCGCC
1 GAGTTCTTAAGGAATCCACATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACGAGCGAATCGCC
*
24992840 TAAGGCCACACGGATCGCGAGACGAAAGGTCTAGCCCCGTGACAAGTGGTATCAGAGCTAGAGTT
66 TAAGGCCACACGGATCGCGAGACGAAAGGTCTAGCCCCGTGACAAGTGGTACCAGAGCTAGAGTT
24992905 CGAACCAAGAAGTATCCGAGCTATTGGTTCAAAGGCACTGTTGGGATGTCGAAAGAAGAGTTCGA
131 CGAACCAAGAAGTATCCGAGCTATTGGTTCAAAGGCACTGTTGGGATGTCGAAAGAAGAGTTCGA
24992970 A
196 A
24992971 CAAATATGGG
Statistics
Matches: 192, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
200 192 1.00
ACGTcount: A:0.29, C:0.20, G:0.31, T:0.20
Consensus pattern (200 bp):
GAGTTCTTAAGGAATCCACATTCGAGTAAAGGCTGACTTGGGCGAGTTTGGACGAGCGAATCGCC
TAAGGCCACACGGATCGCGAGACGAAAGGTCTAGCCCCGTGACAAGTGGTACCAGAGCTAGAGTT
CGAACCAAGAAGTATCCGAGCTATTGGTTCAAAGGCACTGTTGGGATGTCGAAAGAAGAGTTCGA
AGGAG
Found at i:24995299 original size:32 final size:32
Alignment explanation
Indices: 24995262--24995336 Score: 97
Period size: 27 Copynumber: 2.4 Consensus size: 32
24995252 ATGATATGGA
24995262 ATCTTATAAGATATTATTTTATAAGATTACAT
1 ATCTTATAAGATATTATTTTATAAGATTACAT
24995294 ATC-T-T-AG--ATTATTTTATAAGATTACAT
1 ATCTTATAAGATATTATTTTATAAGATTACAT
24995321 ATCTTATCTAAGATAT
1 ATCTTA--TAAGATAT
24995337 GGAATCTTAG
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
27 23 0.64
28 1 0.03
29 2 0.06
30 1 0.03
31 2 0.06
32 5 0.14
34 2 0.06
ACGTcount: A:0.39, C:0.08, G:0.07, T:0.47
Consensus pattern (32 bp):
ATCTTATAAGATATTATTTTATAAGATTACAT
Found at i:24995310 original size:27 final size:27
Alignment explanation
Indices: 24995274--24995326 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
24995264 CTTATAAGAT
24995274 ATTATTTTATAAGATTACATATCTTAG
1 ATTATTTTATAAGATTACATATCTTAG
24995301 ATTATTTTATAAGATTACATATCTTA
1 ATTATTTTATAAGATTACATATCTTA
24995327 TCTAAGATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.08, G:0.06, T:0.49
Consensus pattern (27 bp):
ATTATTTTATAAGATTACATATCTTAG
Found at i:24997155 original size:7 final size:8
Alignment explanation
Indices: 24997133--24997173 Score: 64
Period size: 8 Copynumber: 5.0 Consensus size: 8
24997123 CAATTGAATC
24997133 AATTTTTT
1 AATTTTTT
*
24997141 CTATTTTTT
1 -AATTTTTT
24997150 AATTTTTT
1 AATTTTTT
24997158 AATTTTTT
1 AATTTTTT
24997166 AATTTTTT
1 AATTTTTT
24997174 TTCATTCGAA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
8 23 0.77
9 7 0.23
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (8 bp):
AATTTTTT
Found at i:25000917 original size:24 final size:24
Alignment explanation
Indices: 25000890--25000938 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
25000880 AAATCATCAC
*
25000890 ATTATA-AAGTTGTTAATCCAGTAA
1 ATTATAGAA-TTGATAATCCAGTAA
*
25000914 ATTATAGAATTGATAATCTAGTAA
1 ATTATAGAATTGATAATCCAGTAA
25000938 A
1 A
25000939 ATAAATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (24 bp):
ATTATAGAATTGATAATCCAGTAA
Found at i:25008147 original size:22 final size:22
Alignment explanation
Indices: 25008090--25008178 Score: 74
Period size: 23 Copynumber: 4.0 Consensus size: 22
25008080 TTTACCATGC
**
25008090 GAACCCTACATGTTCTAATATAC
1 GAACCCTACATGTT-TAATATGT
* * *
25008113 GAAGCCTATATG-TTATTTATGT
1 GAACCCTACATGTTTA-ATATGT
25008135 GAACCCTACATGTGTTAATATGT
1 GAACCCTACATGT-TTAATATGT
*
25008158 GAACCCTA-ATTGTTTATTATG
1 GAACCCTACA-TGTTTAATATG
25008179 AGAATTCTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 9
0.75 0.13 0.13
Matches are distributed among these distances:
21 2 0.04
22 22 0.42
23 26 0.49
24 3 0.06
ACGTcount: A:0.30, C:0.17, G:0.15, T:0.38
Consensus pattern (22 bp):
GAACCCTACATGTTTAATATGT
Found at i:25008220 original size:15 final size:15
Alignment explanation
Indices: 25008190--25008236 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
25008180 GAATTCTATA
* *
25008190 TGTGAACCATAGATG
1 TGTGAACCCTAAATG
*
25008205 TGTGAGCCCTAAATG
1 TGTGAACCCTAAATG
*
25008220 TGTGAACCCTATATG
1 TGTGAACCCTAAATG
25008235 TG
1 TG
25008237 AACTTAATTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (15 bp):
TGTGAACCCTAAATG
Found at i:25018037 original size:13 final size:13
Alignment explanation
Indices: 25018019--25018052 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
25018009 ATTCATTTAA
25018019 CATTTCACA-TATT
1 CATTTCA-AGTATT
25018032 CATTTCAAGTATT
1 CATTTCAAGTATT
25018045 CATTTCAA
1 CATTTCAA
25018053 ATGTCCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 1 0.05
13 19 0.95
ACGTcount: A:0.32, C:0.21, G:0.03, T:0.44
Consensus pattern (13 bp):
CATTTCAAGTATT
Found at i:25036503 original size:31 final size:31
Alignment explanation
Indices: 25036465--25036527 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
25036455 AAATGTTTCA
25036465 ACATACCTGAAAGACTAAGCCAAGATTTAGC
1 ACATACCTGAAAGACTAAGCCAAGATTTAGC
25036496 ACATACCTGAAAGACTAAGCCAAGATTTAGC
1 ACATACCTGAAAGACTAAGCCAAGATTTAGC
25036527 A
1 A
25036528 TACTATGTAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.22, G:0.16, T:0.19
Consensus pattern (31 bp):
ACATACCTGAAAGACTAAGCCAAGATTTAGC
Found at i:25040706 original size:47 final size:47
Alignment explanation
Indices: 25040623--25040824 Score: 242
Period size: 47 Copynumber: 4.3 Consensus size: 47
25040613 AAGGAGGAAG
* * *
25040623 AAGTAGCAATTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATA
1 AAGTGGCAGTTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATT
* *
25040670 AAGTGGCAGTTTATCTACAAAAGTGGTGGCTAGTCCACAATTTTATT
1 AAGTGGCAGTTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATT
* * * * *
25040717 AAGTGGCAGTTTATTTGCAAAAGTAGTGGCTTGTCCATAATTTTATT
1 AAGTGGCAGTTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATT
* * ** * *
25040764 AAGTGGTAGTTTATCTGCAGCAGTGGTGACTTGTCCACAATATCATT
1 AAGTGGCAGTTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATT
**
25040811 AAGTGATAGTTTAT
1 AAGTGGCAGTTTAT
25040825 ATGCATTACA
Statistics
Matches: 135, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 135 1.00
ACGTcount: A:0.30, C:0.13, G:0.21, T:0.36
Consensus pattern (47 bp):
AAGTGGCAGTTTATCTACAAAAGTGGTGGCTTGTCCACAATATTATT
Found at i:25042786 original size:12 final size:12
Alignment explanation
Indices: 25042769--25042794 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
25042759 AGATGCCACT
25042769 CATTGTTTATAA
1 CATTGTTTATAA
25042781 CATTGTTTATAA
1 CATTGTTTATAA
25042793 CA
1 CA
25042795 GGAACCTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (12 bp):
CATTGTTTATAA
Found at i:25052940 original size:18 final size:16
Alignment explanation
Indices: 25052917--25052952 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
25052907 ATAGGGTTTT
25052917 TAAAAGTATATTACAAAA
1 TAAAAGT-TATTA-AAAA
25052935 TAAAAGTTATTAAAAA
1 TAAAAGTTATTAAAAA
25052951 TA
1 TA
25052953 TATTATATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (16 bp):
TAAAAGTTATTAAAAA
Found at i:25054606 original size:100 final size:100
Alignment explanation
Indices: 25054478--25055449 Score: 1121
Period size: 100 Copynumber: 9.7 Consensus size: 100
25054468 TTTGATCTGC
* ** * * * * * * * *
25054478 TTAACTGTGATGTCGGGGAAATAAGATTCGCTGCTGTAGCTTCAATCGGTTCCACTACACTGCTT
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCT
*
25054543 GGGAAGTAAGATTCGCTATTGTAGCTTTAATCTTT
66 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * * * * * * * *
25054578 TTAACTGTAATTTCGGGGAAGCAAGATTCACTGTTTTGACGTTAATTTGTTCCACTGCACCGCTT
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCT
*
25054643 GAGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
66 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * * ** * *
25054678 TTAACTGCAATGTCGGGGAAGAAAGGTTTGCC-ATTGTGGCTTTAATCTGTTCCACTACACCGCC
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGCACTGCC
* * * * *
25054742 AGGGAAATAAGATTCGCTATTTTAGCATTAATCTTT
65 TGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * * *
25054778 TTAACTGCAAAGTTGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCA-TCGCC
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACT-GCC
** *
25054842 TGGTTAGTAAGATTCACTGTTGTAGCTTTAATCTTT
65 TGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * * *
25054878 TTAACTGCAATGTCGGGGAAGAAAGATTCACCGATGTGCCTTTAATCTATTCCACTGCA-TCGCC
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACT-GCC
*
25054942 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
65 TGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * * ** *
25054978 TTAACTGTAATGTCGGGGAAGCCAGATTCACTGATGTGACTTTAATCTGTTCCACTGCACCACCA
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCT
* * *
25055043 GGGAAATAAGATTTGCTGTTGTAGCTTTAACCTTT
66 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * * * *
25055078 GTAACTGCAAAGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGC-GTCGCC
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACT-GCC
*
25055142 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
65 TGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* ** * ** *
25055178 TTAACTGTAATGTCGGGGAAGCGAGATTCATTGATGTGACTTTAATCTGTTCCACTGCACCACCA
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCT
* *
25055243 GGGAAATAAGATTTGCTGTTGTAGCTTTAATCTTT
66 GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * * *
25055278 GTAACT-TCAAAGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGC-GTCGC
1 TTAACTGT-AATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACT-GC
* *
25055341 CTGGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTT
64 CTGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
* * *
25055378 TTAACTGCAATGTCGGGGAAGCAAGATTCACTGATGTGGCTTTAATCTGTTCCACTGGA-TCGCC
1 TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACT-GCC
25055442 TGGGAAGT
65 TGGGAAGT
25055450 TAAATTGGTA
Statistics
Matches: 736, Mismatches: 126, Indels: 20
0.83 0.14 0.02
Matches are distributed among these distances:
99 1 0.00
100 734 1.00
101 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (100 bp):
TTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACTGCCT
GGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTT
Found at i:25054833 original size:200 final size:200
Alignment explanation
Indices: 25054542--25055434 Score: 1257
Period size: 200 Copynumber: 4.5 Consensus size: 200
25054532 CTACACTGCT
* * * *
25054542 TGGGAAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTGTAATTTCGGGGAAGCAAGATTC
1 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * * * ** * *
25054607 ACTGTTTTGACGTTAATTTGTTCCACTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAGCTTTA
66 ACTGATGTGACTTTAATCTGTTCCACTGCACCACCAGGGAAATAAGATTCGCTGTTGTAGCTTTA
* * * ** * *
25054672 ATCTTTTTAACTGCAATGTCGGGGAAGAAAGGTTTGCC-ATTGTGGCTTTAATCTGTTCCACTAC
131 ATCTTTGTAACTGCAAAGTCGGGGAAGAAAGATTCACCGA-TGTGGCTTTAATCTATTCCACTGC
*
25054736 ACCGCC
195 ATCGCC
* * * * * * * *
25054742 AGGGAAATAAGATTCGCTATTTTAGCATTAATCTTTTTAACTGCAAAGTTGGGGAAGCAAGATTC
1 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* * * * * * ** * *
25054807 ACCGATGTGGCTTTAATCTATTCCACTGCATCGCCTGGTTAGTAAGATTCACTGTTGTAGCTTTA
66 ACTGATGTGACTTTAATCTGTTCCACTGCACCACCAGGGAAATAAGATTCGCTGTTGTAGCTTTA
* * *
25054872 ATCTTTTTAACTGCAATGTCGGGGAAGAAAGATTCACCGATGTGCCTTTAATCTATTCCACTGCA
131 ATCTTTGTAACTGCAAAGTCGGGGAAGAAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCA
25054937 TCGCC
196 TCGCC
* *
25054942 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCCAGATTC
1 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
*
25055007 ACTGATGTGACTTTAATCTGTTCCACTGCACCACCAGGGAAATAAGATTTGCTGTTGTAGCTTTA
66 ACTGATGTGACTTTAATCTGTTCCACTGCACCACCAGGGAAATAAGATTCGCTGTTGTAGCTTTA
* * *
25055072 ACCTTTGTAACTGCAAAGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCG
131 ATCTTTGTAACTGCAAAGTCGGGGAAGAAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCA
25055137 TCGCC
196 TCGCC
* *
25055142 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCGAGATTC
1 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
* *
25055207 ATTGATGTGACTTTAATCTGTTCCACTGCACCACCAGGGAAATAAGATTTGCTGTTGTAGCTTTA
66 ACTGATGTGACTTTAATCTGTTCCACTGCACCACCAGGGAAATAAGATTCGCTGTTGTAGCTTTA
* * *
25055272 ATCTTTGTAACTTCAAAGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCG
131 ATCTTTGTAACTGCAAAGTCGGGGAAGAAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCA
25055337 TCGCC
196 TCGCC
*
25055342 TGGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
1 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
*
25055407 ACTGATGTGGCTTTAATCTGTTCCACTG
66 ACTGATGTGACTTTAATCTGTTCCACTG
25055435 GATCGCCTGG
Statistics
Matches: 628, Mismatches: 64, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
200 627 1.00
201 1 0.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (200 bp):
TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC
ACTGATGTGACTTTAATCTGTTCCACTGCACCACCAGGGAAATAAGATTCGCTGTTGTAGCTTTA
ATCTTTGTAACTGCAAAGTCGGGGAAGAAAGATTCACCGATGTGGCTTTAATCTATTCCACTGCA
TCGCC
Found at i:25055023 original size:300 final size:299
Alignment explanation
Indices: 25054542--25055445 Score: 1261
Period size: 300 Copynumber: 3.0 Consensus size: 299
25054532 CTACACTGCT
* * *
25054542 TGGGAAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAACTGTAATTTCGGGGAAGCAAGATTC
1 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTC
* * * * * *
25054607 ACTGTTTTGACGTTAATTTGTTCCACTGCACCGCTTGAGAAGTAAGATTCGCTGTTGTAGCTTTA
66 ACTGATGTGACTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
* * * ** * *
25054672 ATCTTTTTAACTGCAATGTCGGGGAAGAAAGGTTTGCCATTGTGGCTTTAATCTGTTCCACTACA
131 ATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTCACGA-TGTGGCTTTAATCTGTTCCACTGCA
* * * *
25054737 CCGCCAGGGAAATAAGATTCGCTATTTTAGCATTAATCTTTTTAACTGCAAAGTTGGGGAAGCAA
195 CCGCCAGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAAGTCGGGGAAGCAA
25054802 GATTCACCGATGTGGCTTTAATCTATTCCACTGCATCGCC
260 GATTCACCGATGTGGCTTTAATCTATTCCACTGCATCGCC
** * * *
25054842 TGGTTAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGAAAGATTC
1 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTC
* * * * *
25054907 ACCGATGTGCCTTTAATCTATTCCACTGCATCGCCTGGGGAGTAAGATTCGCTGTTGTAGCTTTA
66 ACTGATGTGACTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
* *
25054972 ATCTTTTTAACTGTAATGTCGGGGAAGCCAGATTCACTGATGTGACTTTAATCTGTTCCACTGCA
131 ATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTCAC-GATGTGGCTTTAATCTGTTCCACTGCA
* * * *
25055037 CCACCAGGGAAATAAGATTTGCTGTTGTAGCTTTAACCTTTGTAACTGCAAAGTCGGGGAAGCAA
195 CCGCCAGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAAGTCGGGGAAGCAA
*
25055102 GATTCACCGATGTGGCTTTAATCTATTCCACTGCGTCGCC
260 GATTCACCGATGTGGCTTTAATCTATTCCACTGCATCGCC
*
25055142 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCGAGATTC
1 TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTC
* * * * *
25055207 ATTGATGTGACTTTAATCTGTTCCACTGCACCACCAGGGAAATAAGATTTGCTGTTGTAGCTTTA
66 ACTGATGTGACTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
* * *
25055272 ATCTTTGTAACT-TCAAAGTCGGGGAAGCAAGATTCACCGATGTGGCTTTAATCTATTCCACTGC
131 ATCTTTTTAACTGT-AATGTCGGGGAAGCAAGATTCA-CGATGTGGCTTTAATCTGTTCCACTGC
** * * * * *
25055336 GTCGCCTGGGGAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCA
194 ACCGCCAGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAAGTCGGGGAAGCA
* * *
25055401 AGATTCACTGATGTGGCTTTAATCTGTTCCACTGGATCGCC
259 AGATTCACCGATGTGGCTTTAATCTATTCCACTGCATCGCC
25055442 TGGG
1 TGGG
25055446 AAGTTAAATT
Statistics
Matches: 529, Mismatches: 72, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
299 1 0.00
300 526 0.99
301 2 0.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.34
Consensus pattern (299 bp):
TGGGGAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTC
ACTGATGTGACTTTAATCTGTTCCACTGCACCGCCTGGGAAGTAAGATTCGCTGTTGTAGCTTTA
ATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTCACGATGTGGCTTTAATCTGTTCCACTGCAC
CGCCAGGGAAATAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAAAGTCGGGGAAGCAAG
ATTCACCGATGTGGCTTTAATCTATTCCACTGCATCGCC
Found at i:25056741 original size:17 final size:17
Alignment explanation
Indices: 25056721--25056780 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 17
25056711 AGCCTCTCCA
25056721 TTTTTACTTTTTCATCAT
1 TTTTTA-TTTTTCATCAT
25056739 TTTTTATTTTTCATTTTCACT
1 TTTTTATTTTTCA---TCA-T
*
25056760 TTTTCATTTTTCA-CAT
1 TTTTTATTTTTCATCAT
25056776 TTTTT
1 TTTTT
25056781 TACTCAAAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
16 5 0.14
17 9 0.25
18 6 0.17
20 3 0.08
21 13 0.36
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTATTTTTCATCAT
Found at i:25056748 original size:6 final size:7
Alignment explanation
Indices: 25056735--25056772 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
25056725 TACTTTTTCA
25056735 TCATTTT
1 TCATTTT
*
25056742 TTATTTT
1 TCATTTT
25056749 TCA-TTT
1 TCATTTT
25056755 TCACTTTT
1 TCA-TTTT
25056763 TCATTTT
1 TCATTTT
25056770 TCA
1 TCA
25056773 CATTTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
6 6 0.22
7 15 0.56
8 6 0.22
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.68
Consensus pattern (7 bp):
TCATTTT
Found at i:25056770 original size:15 final size:15
Alignment explanation
Indices: 25056735--25056779 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
25056725 TACTTTTTCA
*
25056735 TCATTTTTTA-TTTT
1 TCATTTTTCACTTTT
25056749 TCA-TTTTCACTTTT
1 TCATTTTTCACTTTT
25056763 TCATTTTTCACATTTT
1 TCATTTTTCAC-TTTT
25056779 T
1 T
25056780 TTACTCAAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
13 5 0.19
14 10 0.37
15 7 0.26
16 5 0.19
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (15 bp):
TCATTTTTCACTTTT
Found at i:25070984 original size:18 final size:18
Alignment explanation
Indices: 25070949--25070986 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
25070939 TATAAGTACG
*
25070949 CAGAAATAAAATGATGTT
1 CAGAAATAAAATAATGTT
25070967 CAGAAATAAAA-AATTGTT
1 CAGAAATAAAATAA-TGTT
25070985 CA
1 CA
25070987 TAAGTTTGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 1 0.06
18 17 0.94
ACGTcount: A:0.53, C:0.08, G:0.13, T:0.26
Consensus pattern (18 bp):
CAGAAATAAAATAATGTT
Found at i:25073358 original size:14 final size:15
Alignment explanation
Indices: 25073326--25073359 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
25073316 TTGTATGTTT
25073326 GATTAACATGGATTTA
1 GATTAACATGGA-TTA
25073342 GATTAACATGG-TTA
1 GATTAACATGGATTA
25073356 GATT
1 GATT
25073360 TTAAGTTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
16 11 0.61
ACGTcount: A:0.35, C:0.06, G:0.21, T:0.38
Consensus pattern (15 bp):
GATTAACATGGATTA
Found at i:25079000 original size:18 final size:19
Alignment explanation
Indices: 25078959--25079003 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
25078949 AGAATAAAAC
25078959 ATTTTGAAATTGAATAATG
1 ATTTTGAAATTGAATAATG
25078978 A-TTTGTAAA-TGAATAAT-
1 ATTTTG-AAATTGAATAATG
25078995 ATTTTGAAA
1 ATTTTGAAA
25079004 ACGAACGGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 4 0.17
18 16 0.67
19 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.13, T:0.42
Consensus pattern (19 bp):
ATTTTGAAATTGAATAATG
Found at i:25079394 original size:27 final size:25
Alignment explanation
Indices: 25079333--25079387 Score: 83
Period size: 25 Copynumber: 2.2 Consensus size: 25
25079323 AACTGTCCTT
* *
25079333 GATAGTATATCCTGAAACTGCTATA
1 GATAGTATATACTGAAACTACTATA
*
25079358 GATAGTATATACTGAGACTACTATA
1 GATAGTATATACTGAAACTACTATA
25079383 GATAG
1 GATAG
25079388 ACTATATAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (25 bp):
GATAGTATATACTGAAACTACTATA
Found at i:25079404 original size:40 final size:40
Alignment explanation
Indices: 25079358--25079435 Score: 156
Period size: 40 Copynumber: 1.9 Consensus size: 40
25079348 AACTGCTATA
25079358 GATAGTATATACTGAGACTACTATAGATAGACTATATAGT
1 GATAGTATATACTGAGACTACTATAGATAGACTATATAGT
25079398 GATAGTATATACTGAGACTACTATAGATAGACTATATA
1 GATAGTATATACTGAGACTACTATAGATAGACTATATA
25079436 CTGAAAACAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.32
Consensus pattern (40 bp):
GATAGTATATACTGAGACTACTATAGATAGACTATATAGT
Found at i:25081867 original size:50 final size:49
Alignment explanation
Indices: 25081752--25081919 Score: 167
Period size: 50 Copynumber: 3.4 Consensus size: 49
25081742 CAGATATGGT
** * * * * *
25081752 CTTACATGGGAGTTCTCATATCGGTGCCCATGCCAAGTCCTAGACATGA
1 CTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGA
*
25081801 TCTTAC-GGGGAACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATAGA
1 -CTTACATGGG-ACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACAT-GA
* * * * * *
25081852 CTTACATGGGCCCTCTCACCTTGGTGCCAACGCCGTATCCCAGACATGGT
1 CTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACAT-GA
25081902 CTTACATGGGACCTCTCA
1 CTTACATGGGACCTCTCA
25081920 AAATCTCCAT
Statistics
Matches: 98, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
49 3 0.03
50 90 0.92
51 5 0.05
ACGTcount: A:0.22, C:0.32, G:0.21, T:0.24
Consensus pattern (49 bp):
CTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGA
Found at i:25082749 original size:50 final size:50
Alignment explanation
Indices: 25082677--25082814 Score: 179
Period size: 50 Copynumber: 2.8 Consensus size: 50
25082667 AGGTGCCCAT
* * * * * *
25082677 GCCATGTCCCACAAATGTTCTTACGA-GAGACCTCTCATCTCGGTGCTAAC
1 GCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGGAGCCAAC
* * *
25082727 GCCATGTCCCAGACATGGTCTTATATGGGACCTCTCTTCTTGGAGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGAGCCAAC
25082777 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
25082815 AATCTTAATG
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
49 1 0.01
50 75 0.99
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGAGCCAAC
Found at i:25082840 original size:56 final size:50
Alignment explanation
Indices: 25082677--25082866 Score: 175
Period size: 50 Copynumber: 3.7 Consensus size: 50
25082667 AGGTGCCCAT
* * * * * * * *
25082677 GCCATGTCCCACAAATGTTCTTACGA-GAGACCTCTCATCTCGGTGCTAAC
1 GCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCTTCTTGGAGCCAAC
*
25082727 GCCATGTCCCAGACATGGTCTTATATGGGACCTCTCTTCTTGGAGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTCTTGGAGCCAAC
* *
25082777 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTTAATGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-T--TCTT--GGA-GCCAAC
* * * *
25082833 GTCATGTCCTACATATGGTCTTACATGGGACCTC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTC
25082867 ATCCTCTTAA
Statistics
Matches: 117, Mismatches: 16, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
49 1 0.01
50 74 0.63
51 1 0.01
53 4 0.03
55 2 0.02
56 35 0.30
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTTCTTGGAGCCAAC
Found at i:25085081 original size:50 final size:50
Alignment explanation
Indices: 25084922--25085105 Score: 160
Period size: 50 Copynumber: 3.7 Consensus size: 50
25084912 ACTGCCAATG
* ** ** * **
25084922 CCATATCCCAGATATGGTCTTAC-ATGGGAGTTCTCATATCGGTGCCCATG
1 CCATATCCCAGACATGGTCTTACGA-GGGACCTCTCACCTCGGTGCCAACA
* * * * *
25084972 CCATGTCCTAGACATGGTTTTACGGGGGACCTCT--TCTCGGTGCCAACA
1 CCATATCCCAGACATGGTCTTACGAGGGACCTCTCACCTCGGTGCCAACA
* * *
25085020 CCATGTCCCAGACA-GAGTCTTACGTGGGACCTCTCACCTCGGTGCCAACG
1 CCATATCCCAGACATG-GTCTTACGAGGGACCTCTCACCTCGGTGCCAACA
* *
25085070 CCCTATCCCAGACATGGTCTTACAAGGGACCTCTCA
1 CCATATCCCAGACATGGTCTTACGAGGGACCTCTCA
25085106 AAATCTCAAT
Statistics
Matches: 109, Mismatches: 20, Indels: 10
0.78 0.14 0.07
Matches are distributed among these distances:
47 1 0.01
48 39 0.36
50 68 0.62
51 1 0.01
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (50 bp):
CCATATCCCAGACATGGTCTTACGAGGGACCTCTCACCTCGGTGCCAACA
Found at i:25085882 original size:50 final size:50
Alignment explanation
Indices: 25085826--25086252 Score: 293
Period size: 50 Copynumber: 8.5 Consensus size: 50
25085816 TATCCCAAAT
** * * * *
25085826 ATGGTCTTACATGGGAGTTCTCATATAGATGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
* * *
25085876 ATGGTCTTAC-GGGAGACCTCTCATCTCGGTGCCAACACCATGTCCCAGAC
1 ATGGTCTTACATGG-GACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
* *
25085926 TTGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
* * * * *
25085976 ATGGTCTTACAAGGGACCTCTCATAATCTTAATGATGCCAATGTCATGTCCCAGAT
1 ATGGTCTTACATGGGACCTCTCAT-ATC-----GGTGCCAACGCCATGTCCCAGAC
* *** ** * * * * ** *
25086032 TTGG-AAAATC-TGATACAT-TCTTAAT--GT-CC--TGACATTTGTATCTGATAC
1 ATGGTCTTA-CATGGGACCTCTCAT-ATCGGTGCCAACGCCA--TG--TCCCAGAC
* * * *
25086080 AT--TCTTAC-GGGAGACCTCTCATCTCGATGCTAACGCCATGTCCCAGAC
1 ATGGTCTTACATGG-GACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
* *
25086128 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
* * * *
25086178 ATGGTCTTATAAGGGACCTCTCTTCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
25086228 ATGGTCTTACATGGGACCTCTCATA
1 ATGGTCTTACATGGGACCTCTCATA
25086253 ATCTTAATGA
Statistics
Matches: 290, Mismatches: 63, Indels: 48
0.72 0.16 0.12
Matches are distributed among these distances:
44 4 0.01
46 6 0.02
47 6 0.02
48 15 0.05
49 3 0.01
50 213 0.73
51 6 0.02
52 3 0.01
54 6 0.02
55 5 0.02
56 23 0.08
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATATCGGTGCCAACGCCATGTCCCAGAC
Found at i:25086215 original size:100 final size:100
Alignment explanation
Indices: 25085826--25086251 Score: 323
Period size: 100 Copynumber: 4.2 Consensus size: 100
25085816 TATCCCAAAT
** * * * * * **
25085826 ATGGTCTTACATGGGAGTTCTCATATAGATGCCCATGCCATGTCCCAGACATGGTCTTACGGGAG
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTAAAGGAG
* *
25085891 ACCTCTCATCTCGGTGCCAACACCATGTCCCAGAC
66 ACCTCTCATCTCGATGCCAACGCCATGTCCCAGAC
*
25085926 TTGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAAGG-
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTA-AAGGA
* * * *
25085990 GACCTCTCATAATCTTAATGATGCCAATGTCATGTCCCAGAT
65 GACCTCTC---ATC-T--CGATGCCAACGCCATGTCCCAGAC
* *** ** * * * * * ** * ** * **
25086032 TTGG-AAAATC-TGATACATTCTTAATGTC-CTGACATTTG---TATCTGATACAT--TCTTACG
1 ATGGTCTTA-CATGGGAC-CTC-TCATCTCGGTGCCA-ACGCCATGTCCCAGACATGGTCTTAAA
*
25086089 GGAGACCTCTCATCTCGATGCTAACGCCATGTCCCAGAC
62 GGAGACCTCTCATCTCGATGCCAACGCCATGTCCCAGAC
*
25086128 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGGTCTTATAAGG-
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTA-AAGGA
* *
25086192 GACCTCTCTTCTCGGTGCCAACGCCATGTCCCAGAC
65 GACCTCTCATCTCGATGCCAACGCCATGTCCCAGAC
25086228 ATGGTCTTACATGGGACCTCTCAT
1 ATGGTCTTACATGGGACCTCTCAT
25086252 AATCTTAATG
Statistics
Matches: 244, Mismatches: 61, Indels: 42
0.70 0.18 0.12
Matches are distributed among these distances:
95 6 0.02
96 29 0.12
97 5 0.02
98 9 0.04
99 3 0.01
100 121 0.50
101 6 0.02
102 13 0.05
103 3 0.01
104 9 0.04
105 5 0.02
106 29 0.12
107 6 0.02
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (100 bp):
ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTAAAGGAG
ACCTCTCATCTCGATGCCAACGCCATGTCCCAGAC
Found at i:25086307 original size:252 final size:252
Alignment explanation
Indices: 25085862--25086507 Score: 1042
Period size: 252 Copynumber: 2.5 Consensus size: 252
25085852 AGATGCCCAT
* * *
25085862 GCCATGTCCCAGACATGGTCTTAC-GGGAGACCTCTCATCTCGGTGCCAACACCATGTCCCAGAC
1 GCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
* * *
25085926 TTGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAAGGG
65 ATGGTCTTACATGGGACCTCTCTTCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGG
25085991 ACCTCTCATAATCTTAATGATGCCAATGTCATGTCCCAGATTTGGAAAATCTGATACATTCTTAA
130 ACCTCTCATAATCTTAATGATGCCAATGTCATGTCCCAGATTTGGAAAATCTGATACATTCTTAA
*
25086056 TGTCCTGACATTTGTATCTGATACATTCTTACGGGAGACCTCTCATCTCGATGCTAAC
195 TGTCCTGACATTTGTATCCGATACATTCTTACGGGAGACCTCTCATCTCGATGCTAAC
25086114 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACA
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACA
* *
25086179 TGGTCTTATAAGGGACCTCTCTTCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
66 TGGTCTTACATGGGACCTCTCTTCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
*
25086244 CCTCTCATAATCTTAATGATGCCAATGTCATGTCCTAGATTTGGAAAATCTGATACATTCTTAAT
131 CCTCTCATAATCTTAATGATGCCAATGTCATGTCCCAGATTTGGAAAATCTGATACATTCTTAAT
* *
25086309 GTCCTGACATTTGTATCCGATACATTCTTACGGGAGACCTCTCATCTCGATTCTAAT
196 GTCCTGACATTTGTATCCGATACATTCTTACGGGAGACCTCTCATCTCGATGCTAAC
*
25086366 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAAACA
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACA
* * * * * * *
25086431 TGGTCTTACATGGGGCCTCTCATAATCTTAATGATGCCAAAGTCATGTCCCAGATATGGTCTTCC
66 TGGTCTTACATGGGACCTCTC-T--TC-T--CGGTGCCAACGCCATGTCCCAGACATGGTCTTAC
25086496 ATGGGACCTCTC
125 ATGGGACCTCTC
25086508 CTCTTAATGT
Statistics
Matches: 365, Mismatches: 22, Indels: 8
0.92 0.06 0.02
Matches are distributed among these distances:
252 319 0.87
253 3 0.01
255 2 0.01
256 1 0.00
258 40 0.11
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (252 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACA
TGGTCTTACATGGGACCTCTCTTCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA
CCTCTCATAATCTTAATGATGCCAATGTCATGTCCCAGATTTGGAAAATCTGATACATTCTTAAT
GTCCTGACATTTGTATCCGATACATTCTTACGGGAGACCTCTCATCTCGATGCTAAC
Found at i:25086478 original size:56 final size:50
Alignment explanation
Indices: 25085826--25086512 Score: 261
Period size: 50 Copynumber: 13.5 Consensus size: 50
25085816 TATCCCAAAT
** * * * *
25085826 ATGGTCTTACATGGGAGTTCTCATATAGATGCCCATGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTTGATGCCAAAGCCATGTCCCAGAC
* * *
25085876 ATGGTCTTAC-GGGAGACCTCTCATCTCGGTGCCAACA-CCATGTCCCAGAC
1 ATGGTCTTACATGG-GACCTCTCATCTTGATGCCAA-AGCCATGTCCCAGAC
* * * *
25085926 TTGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTTGATGCCAAAGCCATGTCCCAGAC
* * * *
25085976 ATGGTCTTACAAGGGACCTCTCATAATCTTAATGATGCCAATGTCATGTCCCAGAT
1 ATGGTCTTACATGGGACCTCTC---ATC-T--TGATGCCAAAGCCATGTCCCAGAC
* * * ** * * * * ** *
25086032 TTGG---AAAATCTGA--T-ACATTCTTAATGTCC--TGACATTTGTATCTGATAC
1 ATGGTCTTACATGGGACCTCTCA-TCTTGATG-CCAAAGCCA--TG--TCCCAGAC
* * * *
25086080 AT--TCTTAC-GGGAGACCTCTCATCTCGATGCTAACGCCATGTCCCAGAC
1 ATGGTCTTACATGG-GACCTCTCATCTTGATGCCAAAGCCATGTCCCAGAC
* * * *
25086128 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTTGATGCCAAAGCCATGTCCCAGAC
* * * * * *
25086178 ATGGTCTTATAAGGGACCTCTCTTCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTTGATGCCAAAGCCATGTCCCAGAC
* * * *
25086228 ATGGTCTTACATGGGACCTCTCATAATCTTAATGATGCCAATGTCATGTCCTAGAT
1 ATGGTCTTACATGGGACCTCTC---ATC-T--TGATGCCAAAGCCATGTCCCAGAC
* * * ** * * * * * *
25086284 TTGG---AAAATCTGA--T-ACATTCTTAATGTCC--TGACATTTGTATCCGATAC
1 ATGGTCTTACATGGGACCTCTCA-TCTTGATG-CCAAAGCCA--TG--TCCCAGAC
* * * * *
25086332 AT--TCTTAC-GGGAGACCTCTCATCTCGATTCTAATGCCATGTCCCAGAC
1 ATGGTCTTACATGG-GACCTCTCATCTTGATGCCAAAGCCATGTCCCAGAC
* * *
25086380 ATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTTGATGCCAAAGCCATGTCCCAGAC
* * *
25086430 ATGGTCTTACATGGGGCCTCTCATAATCTTAATGATGCCAAAGTCATGTCCCAGAT
1 ATGGTCTTACATGGGACCTCTC---ATC-T--TGATGCCAAAGCCATGTCCCAGAC
* *
25086486 ATGGTCTTCCATGGGACCTCTCCTCTT
1 ATGGTCTTACATGGGACCTCTCATCTT
25086513 AATGTCATGA
Statistics
Matches: 475, Mismatches: 104, Indels: 116
0.68 0.15 0.17
Matches are distributed among these distances:
44 8 0.02
45 8 0.02
46 8 0.02
47 4 0.01
48 30 0.06
49 8 0.02
50 272 0.57
51 21 0.04
52 12 0.03
53 19 0.04
54 3 0.01
56 82 0.17
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTTGATGCCAAAGCCATGTCCCAGAC
Found at i:25088566 original size:49 final size:49
Alignment explanation
Indices: 25088513--25088735 Score: 145
Period size: 48 Copynumber: 4.6 Consensus size: 49
25088503 TGCCAAAGTA
* *
25088513 ATATCCCAGACATGGTCTTACATGGGATGTT-TCTTGTAC-TGCCAATGCC
1 ATATCCCAGACATGGTCTTACATGGGA-GTTCTCATAT-CGTGCCAATGCC
* *
25088562 ATATCCCA-ATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCC
1 ATATCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTGCCAATGCC
* * * ** ** * *
25088611 ATGTCCTAGACATGGTCTTA-A-GGGGGACCTTTTCTCGGTGCCAACGCC
1 ATATCCCAGACATGGTCTTACATGGGAGTTCTCATATC-GTGCCAATGCC
* * ** **
25088659 ATGTCCCAGACA-GAGTCTTACGTGGGACCTCTCACCTCGGTGCC-ATCGCC
1 ATATCCCAGACATG-GTCTTACATGGGAGTTCTCATATC-GTGCCAAT-GCC
* *
25088709 CTGTCCCAGACATGGTCTTACATGGGA
1 ATATCCCAGACATGGTCTTACATGGGA
25088736 CCTCTCAAAA
Statistics
Matches: 138, Mismatches: 27, Indels: 17
0.76 0.15 0.09
Matches are distributed among these distances:
47 5 0.04
48 57 0.41
49 25 0.18
50 50 0.36
51 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (49 bp):
ATATCCCAGACATGGTCTTACATGGGAGTTCTCATATCGTGCCAATGCC
Found at i:25088717 original size:50 final size:50
Alignment explanation
Indices: 25088552--25088796 Score: 185
Period size: 50 Copynumber: 4.8 Consensus size: 50
25088542 TTTCTTGTAC
* * * ** **
25088552 TGCCAATGCCATATCCCA-ATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCACCTCGG
* * * * **
25088601 TGCCCATGCCATGTCCTAGACATGGTCTTA-AGGGGGACCT-T-TTCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACA-TGGGACCTCTCACCTCGG
*
25088649 TGCCAACGCCATGTCCCAGACA-GAGTCTTACGTGGGACCTCTCACCTCGG
1 TGCCAACGCCATGTCCCAGACATG-GTCTTACATGGGACCTCTCACCTCGG
* * * *
25088699 TGCCATCGCCCTGTCCCAGACATGGTCTTACATGGGACCTCTCAAAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ACCTC---GG
* * * *
25088755 TACCAATGCCATGTCCCAGACATGGTCTTACATAGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
25088797 TTACCCAAAT
Statistics
Matches: 156, Mismatches: 27, Indels: 19
0.77 0.13 0.09
Matches are distributed among these distances:
47 1 0.01
48 37 0.24
49 18 0.12
50 58 0.37
51 1 0.01
53 4 0.03
56 37 0.24
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCACCTCGG
Found at i:25088736 original size:98 final size:99
Alignment explanation
Indices: 25088516--25088738 Score: 235
Period size: 98 Copynumber: 2.3 Consensus size: 99
25088506 CAAAGTAATA
* * *
25088516 TCCCAGACATGGTCTTACATGGGA--TGTTTCTTGTACTGCCAATGCCATATCCCAATATGGTCT
1 TCCCAGACATGGTCTTACATGGGACCTGTTTCTCG-ACTGCCAACGCCATATCCCAACATGGTCT
** *
25088579 TACATGGGAGTTCTCATATCGGTGCCCATGCCATG
65 TACATGGGACCTCTCACATCGGTGCCCATGCCATG
* * * *
25088614 TCCTAGACATGGTCTTA-AGGGGGACCT-TTTCTCG-GTGCCAACGCCATGTCCCAGACA-GAGT
1 TCCCAGACATGGTCTTACA-TGGGACCTGTTTCTCGACTGCCAACGCCATATCCCA-ACATG-GT
* * *
25088675 CTTACGTGGGACCTCTCACCTCGGTG-CCATCGCCCTG
63 CTTACATGGGACCTCTCACATCGGTGCCCAT-GCCATG
25088712 TCCCAGACATGGTCTTACATGGGACCT
1 TCCCAGACATGGTCTTACATGGGACCT
25088739 CTCAAAATCT
Statistics
Matches: 103, Mismatches: 15, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
97 22 0.21
98 73 0.71
99 7 0.07
100 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.23, T:0.28
Consensus pattern (99 bp):
TCCCAGACATGGTCTTACATGGGACCTGTTTCTCGACTGCCAACGCCATATCCCAACATGGTCTT
ACATGGGACCTCTCACATCGGTGCCCATGCCATG
Found at i:25089517 original size:50 final size:50
Alignment explanation
Indices: 25089444--25089636 Score: 235
Period size: 50 Copynumber: 3.9 Consensus size: 50
25089434 TCTTGTACTA
* * * * ** * *
25089444 CCAATTCCATATCCCAAATATGGTCTTACATGGGATTTCTCATATAGGTG
1 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
* * *
25089494 CCCATTCCATGTCCCAGACATGGTCTTAC-GGGAGACCTCTCATCTCGGTG
1 CCAACTCCATGTCCCAGACATGGTCTTACATGG-GACCTCTCATCTCGGTG
* *
25089544 CCAACACCATGTCCCAGACTTGGTCTTACATGGGACCTCTCATCTCGGTG
1 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
* *
25089594 CCAACGCCATGTCCCAGACATGGTCTTACATGGAACCTCTCAT
1 CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT
25089637 AATCTTAATG
Statistics
Matches: 124, Mismatches: 17, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
49 2 0.02
50 120 0.97
51 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.19, T:0.27
Consensus pattern (50 bp):
CCAACTCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
Found at i:25089802 original size:50 final size:50
Alignment explanation
Indices: 25089719--25089892 Score: 197
Period size: 50 Copynumber: 3.4 Consensus size: 50
25089709 TCCGATACAT
*
25089719 TCTTACA-GGAGACCTCTCATCTCGATGCTAACGCCATGTCCCAGACATGG
1 TCTTACATGG-GACCTCTCATCTCGATGCCAACGCCATGTCCCAGACATGG
* *
25089769 TCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAACATGG
1 TCTTACATGGGACCTCTCATCTCGATGCCAACGCCATGTCCCAGACATGG
* * * * * *
25089819 TCTTACACGGGGCCTCTCATAATCTTAATGATGCCAATGTCATGTCCCAGATATGG
1 TCTTACATGGGACCTCTC---ATC-T--CGATGCCAACGCCATGTCCCAGACATGG
25089875 TCTTACATGGGACCTCTC
1 TCTTACATGGGACCTCTC
25089893 CTCTTAATGT
Statistics
Matches: 104, Mismatches: 13, Indels: 8
0.83 0.10 0.06
Matches are distributed among these distances:
50 60 0.58
51 2 0.02
53 3 0.03
54 1 0.01
56 38 0.37
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.27
Consensus pattern (50 bp):
TCTTACATGGGACCTCTCATCTCGATGCCAACGCCATGTCCCAGACATGG
Found at i:25090272 original size:29 final size:30
Alignment explanation
Indices: 25090229--25090285 Score: 82
Period size: 29 Copynumber: 1.9 Consensus size: 30
25090219 CCTCGACTCT
25090229 AACTTTGACAAAATTACGA-TTTTGCCCCTA
1 AACTTTGACAAAATTAC-ACTTTTGCCCCTA
*
25090259 AACTTT-ACATAATTACACTTTTGCCCC
1 AACTTTGACAAAATTACACTTTTGCCCC
25090286 AAAGCTCAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
28 1 0.04
29 18 0.72
30 6 0.24
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (30 bp):
AACTTTGACAAAATTACACTTTTGCCCCTA
Found at i:25094717 original size:14 final size:14
Alignment explanation
Indices: 25094698--25094728 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
25094688 GTGAAATAAC
25094698 TTTAGATTCGAAAA
1 TTTAGATTCGAAAA
25094712 TTTAGATTCGAAAA
1 TTTAGATTCGAAAA
25094726 TTT
1 TTT
25094729 TCCCTGAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.39, C:0.06, G:0.13, T:0.42
Consensus pattern (14 bp):
TTTAGATTCGAAAA
Found at i:25095986 original size:50 final size:50
Alignment explanation
Indices: 25095835--25096187 Score: 314
Period size: 50 Copynumber: 6.8 Consensus size: 50
25095825 GATAATAACA
* * * ** * * *
25095835 TGCCAAAGCCATATCCCAGACATGGTCTTACATTGGATGTTTCTTGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * ** * *
25095884 TGCCAATTCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* ** **
25095934 TGCCCATGCCATGTCTGAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
25095984 TGCCAACGCCATGTCCCAGACATGGTCTTACATAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
25096034 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAATCTTAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC--TC-TCATC-T--CGG
* *
25096090 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACC--TC-TCATCTC---GG
*
25096146 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
25096188 TTACCCAAAT
Statistics
Matches: 256, Mismatches: 37, Indels: 18
0.82 0.12 0.06
Matches are distributed among these distances:
49 37 0.14
50 118 0.46
52 2 0.01
53 5 0.02
54 3 0.01
55 1 0.00
56 90 0.35
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:25096095 original size:56 final size:56
Alignment explanation
Indices: 25095984--25096182 Score: 302
Period size: 56 Copynumber: 3.7 Consensus size: 56
25095974 CTCATCTCGG
* * * * *
25095984 TGCCAACGCCATGTCCCAGACATGGTCTTACATAGGACC--TC-TCATC-T--CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAATCTTAATGA
25096034 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAATCTTAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAATCTTAATGA
*
25096090 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAATCTTAATGA
25096146 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
25096183 TCTCTTTACC
Statistics
Matches: 137, Mismatches: 6, Indels: 6
0.92 0.04 0.04
Matches are distributed among these distances:
50 37 0.27
52 2 0.01
53 4 0.03
54 1 0.01
56 93 0.68
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (56 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTTTCATAATCTTAATGA
Found at i:25104389 original size:57 final size:57
Alignment explanation
Indices: 25104298--25104495 Score: 188
Period size: 57 Copynumber: 3.5 Consensus size: 57
25104288 TTGCCAGAAA
* * * * *
25104298 GCTTTCCTTT-TAGAGTCTCACCACAAAGGC-GTCCTTTAAATGGTTCGCCACAAAG
1 GCTTACCTTTCTAGAGTTTTACCACAAAGACTGTCCTTTAAATGGTTCACCACAAAG
* * *
25104353 GGTTACCTTTCTAGAGTTTTACCATAAAGACTGTCCTTT-AATAGGTTCACCATAAAG
1 GCTTACCTTTCTAGAGTTTTACCACAAAGACTGTCCTTTAAAT-GGTTCACCACAAAG
* * * * ** * *
25104410 GCTTACCATTCCAGACTTTTTCCACAAAGACTACCCTTTTACA-GGTTCACCACAAAA
1 GCTTACCTTTCTAGAGTTTTACCACAAAGACTGTCC-TTTAAATGGTTCACCACAAAG
* *
25104467 GCTTACCTTCCTAGAGTTTTGCCACAAAG
1 GCTTACCTTTCTAGAGTTTTACCACAAAG
25104496 GTTGTTATTT
Statistics
Matches: 114, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
55 8 0.07
56 19 0.17
57 83 0.73
58 3 0.03
59 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (57 bp):
GCTTACCTTTCTAGAGTTTTACCACAAAGACTGTCCTTTAAATGGTTCACCACAAAG
Found at i:25104714 original size:51 final size:52
Alignment explanation
Indices: 25104620--25104770 Score: 169
Period size: 52 Copynumber: 2.9 Consensus size: 52
25104610 TTAGTCCTTC
* * * *
25104620 CCATATGATGTCATAACCCACCAGTTATGGTCTTATACGATATGGT-TTTTTT
1 CCATATGATGCCATAACCC-CCAGTTATGGTCTTACACAATATGGTCTTCTTT
* *
25104672 CCATATGATGCCACAACCCCCAATTATGGTCTTACACAATATGGTCTTCTTT
1 CCATATGATGCCATAACCCCCAGTTATGGTCTTACACAATATGGTCTTCTTT
* * * * * *
25104724 CCAAAAGATGCAATAATCCACTAGTTACGGTCTTACACAATATGGTC
1 CCATATGATGCCATAA-CCCCCAGTTATGGTCTTACACAATATGGTC
25104771 CTTTAACGTC
Statistics
Matches: 83, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
51 23 0.28
52 34 0.41
53 26 0.31
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (52 bp):
CCATATGATGCCATAACCCCCAGTTATGGTCTTACACAATATGGTCTTCTTT
Found at i:25106632 original size:12 final size:12
Alignment explanation
Indices: 25106595--25106632 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
25106585 TTCCTTTATT
25106595 TTTTTACTTTTA
1 TTTTTACTTTTA
*
25106607 TTATTA-TTTCTA
1 TTTTTACTTT-TA
25106619 TTTTTACTTTTA
1 TTTTTACTTTTA
25106631 TT
1 TT
25106633 ATTTCTAGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
11 3 0.14
12 16 0.73
13 3 0.14
ACGTcount: A:0.18, C:0.08, G:0.00, T:0.74
Consensus pattern (12 bp):
TTTTTACTTTTA
Found at i:25111418 original size:49 final size:50
Alignment explanation
Indices: 25111270--25111518 Score: 225
Period size: 50 Copynumber: 4.9 Consensus size: 50
25111260 ACATTAAGAG
* * * *
25111270 GATGAGA--TCCCATGTACGACCATGTCTGGGACATAGCATTGGTATCATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCA---A
* *
25111321 GATTATGAGAGGTCCCATGTAAGACTATGTCTGGGACAAGGCATTGGCACCAA
1 G---ATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
* * * *
25111374 GATGAGAGGTTCCATGTAA-ACCATGTCTAGGACATGGCGTTGGCACCGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
** * * * *
25111423 GATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGACATGGGCACCTA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
* ** * * *
25111473 TATGAGAACTTCCATGTAAGACCATATCTGGGATATGGCATTGGCA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
25111519 GTACAAGAAA
Statistics
Matches: 160, Mismatches: 32, Indels: 13
0.78 0.16 0.06
Matches are distributed among these distances:
49 41 0.26
50 76 0.47
51 1 0.01
53 2 0.01
54 6 0.04
56 34 0.21
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAA
Found at i:25111469 original size:99 final size:100
Alignment explanation
Indices: 25111325--25111518 Score: 246
Period size: 99 Copynumber: 1.9 Consensus size: 100
25111315 CATTGAGATT
* * * * **
25111325 ATGAGAGGTCCCATGTAAGACTATGTCTGGGACAAGGCATTGGCACCAAGATGAGAGGTTCCATG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACAAGACATGGGCACCAAGATGAGAACTTCCATG
* *
25111390 TAA-ACCATGTCTAGGACATGGCGTTGGCACCGAG
66 TAAGACCATATCTAGGACATGGCATTGGCACCGAG
* * * * *
25111424 ATGAGAGGTCCCCCGTAAGACCATGTTTGGGACATGACATGGGCACCTATATGAGAACTTCCATG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACAAGACATGGGCACCAAGATGAGAACTTCCATG
* *
25111489 TAAGACCATATCTGGGATATGGCATTGGCA
66 TAAGACCATATCTAGGACATGGCATTGGCA
25111519 GTACAAGAAA
Statistics
Matches: 79, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
99 57 0.72
100 22 0.28
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (100 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACAAGACATGGGCACCAAGATGAGAACTTCCATG
TAAGACCATATCTAGGACATGGCATTGGCACCGAG
Found at i:25124235 original size:21 final size:20
Alignment explanation
Indices: 25124211--25124252 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
25124201 TACAATATTT
*
25124211 TGATGCAAAACTTAATTTTAA
1 TGATGCAAAA-TAAATTTTAA
*
25124232 TGATGCCAAATAAATTTTAA
1 TGATGCAAAATAAATTTTAA
25124252 T
1 T
25124253 ACTAATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (20 bp):
TGATGCAAAATAAATTTTAA
Found at i:25125227 original size:14 final size:14
Alignment explanation
Indices: 25125217--25125249 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
25125207 AAATAAATTT
25125217 AAAAATTTAAAATA
1 AAAAATTTAAAATA
*
25125231 AAAAA-TTAATATA
1 AAAAATTTAAAATA
25125244 AAAAAT
1 AAAAAT
25125250 CGAAACAAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (14 bp):
AAAAATTTAAAATA
Found at i:25133975 original size:74 final size:75
Alignment explanation
Indices: 25133834--25133980 Score: 224
Period size: 74 Copynumber: 1.9 Consensus size: 75
25133824 TCGTTTTAAT
* * *
25133834 ACTCTTAATCTTGCATGAAATGCACAAATTTAAAAAAAAAATAGAGAATTTTATGGTTGTAATCC
1 ACTCTCAAACTTGCATGAAATACACAAATTT--AAAAAAAATAGAGAATTTTATGGTTGTAATCC
25133899 AAGATAGGGGTG
64 AAGATAGGGGTG
* *
25133911 ACTCTCAAACTTGCATGAAATACACAAATTT-AAAAAATTAGAGACTTTTATGGTTGTAATCCAA
1 ACTCTCAAACTTGCATGAAATACACAAATTTAAAAAAAATAGAGAATTTTATGGTTGTAATCCAA
25133975 GATAGG
66 GATAGG
25133981 TTGACGTAGT
Statistics
Matches: 65, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
74 37 0.57
77 28 0.43
ACGTcount: A:0.41, C:0.12, G:0.16, T:0.30
Consensus pattern (75 bp):
ACTCTCAAACTTGCATGAAATACACAAATTTAAAAAAAATAGAGAATTTTATGGTTGTAATCCAA
GATAGGGGTG
Found at i:25136763 original size:24 final size:24
Alignment explanation
Indices: 25136706--25136763 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 24
25136696 ATAGTTACAG
* *
25136706 TTCAAATACAGAATCAAAAGCAAT
1 TTCAGATACAGAAGCAAAAGCAAT
*
25136730 TTC-GAGTACAGAAGCAAACGCAAT
1 TTCAGA-TACAGAAGCAAAAGCAAT
25136754 TTCAGATACA
1 TTCAGATACA
25136764 TATTCAGTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
23 1 0.03
24 26 0.90
25 2 0.07
ACGTcount: A:0.47, C:0.19, G:0.14, T:0.21
Consensus pattern (24 bp):
TTCAGATACAGAAGCAAAAGCAAT
Found at i:25138945 original size:22 final size:21
Alignment explanation
Indices: 25138912--25138952 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 21
25138902 TGTTTATATA
25138912 TAAATATATATTCTTTATAAATT
1 TAAATATATA-T-TTTATAAATT
25138935 TAAAT-TATATTTTATAAA
1 TAAATATATATTTTATAAA
25138953 ATTATATTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 4 0.22
23 5 0.28
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
TAAATATATATTTTATAAATT
Found at i:25138959 original size:39 final size:40
Alignment explanation
Indices: 25138875--25138959 Score: 90
Period size: 39 Copynumber: 2.2 Consensus size: 40
25138865 CTTGGCATAG
*
25138875 AATTAT-TAATCTTTAAAATTTTCAAATTGTTTATATATA
1 AATTATATAATCTTTAAAATTTTCAAATTATTTATATATA
* *
25138914 AA-TATATATTCTTTATAAA-TTT-AAATTATATTTTATA-A
1 AATTATATAATCTTTA-AAATTTTCAAATTAT-TTATATATA
25138952 AATTATAT
1 AATTATAT
25138960 TGAGATGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
38 12 0.31
39 24 0.62
40 3 0.08
ACGTcount: A:0.44, C:0.04, G:0.01, T:0.52
Consensus pattern (40 bp):
AATTATATAATCTTTAAAATTTTCAAATTATTTATATATA
Found at i:25139310 original size:21 final size:21
Alignment explanation
Indices: 25139284--25139324 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
25139274 ATGGATAAAA
25139284 TTTAAGATTTAATATTTAGAT
1 TTTAAGATTTAATATTTAGAT
* * *
25139305 TTTAAGGTTTAGTCTTTAGA
1 TTTAAGATTTAATATTTAGA
25139325 GTCTATAGAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.02, G:0.15, T:0.51
Consensus pattern (21 bp):
TTTAAGATTTAATATTTAGAT
Found at i:25140595 original size:30 final size:30
Alignment explanation
Indices: 25140561--25140620 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
25140551 ACTTAACAAG
*
25140561 CAAATGCCTCTAAAATAATAGCAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
* *
25140591 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGCCTCTAAAATAATAACAAAATTAA
25140621 GAATAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.55, C:0.13, G:0.05, T:0.27
Consensus pattern (30 bp):
CAAATGCCTCTAAAATAATAACAAAATTAA
Done.