Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 84 of 173
Found at i:26259925 original size:50 final size:50
Alignment explanation
Indices: 26259846--26260073 Score: 262
Period size: 50 Copynumber: 4.5 Consensus size: 50
26259836 TCCTAGATAC
* ** * * * *
26259846 GGTCTTACATCGGAGTTTTCATATCGGTGCCCATGCCATGTCCCAGACAT
1 GGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACAT
** *
26259896 GGTCTTACGGGGGACCTCTCATCTCGGTGCCAACACCATGTCCCAGACAT
1 GGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACAT
* *
26259946 GGTCTTACATGAGACCTCTCATCTCGGTGCCAACGCCATGTCTCAGACAT
1 GGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACAT
* *
26259996 GGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGCCATGTCCCAGACAT
1 GGTCTTACATGGGACCTCTC---ATCTC---GGTGCCAACGCCATGTCCCAGACAT
26260052 GGTCTTACATGGGA--TCTCATCT
1 GGTCTTACATGGGACCTCTCATCT
26260074 TCTTAATGTC
Statistics
Matches: 153, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
50 104 0.68
51 4 0.03
53 5 0.03
54 4 0.03
56 36 0.24
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (50 bp):
GGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGACAT
Found at i:26262366 original size:38 final size:38
Alignment explanation
Indices: 26262324--26262543 Score: 226
Period size: 38 Copynumber: 5.8 Consensus size: 38
26262314 ATAACACTGG
* * *
26262324 CACTAAACCTGCTAGGCATTAAGCCAGAATAACATCGA
1 CACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGA
* * *
26262362 CACTAAGCCTGCTAGACACTAAGCATGAATAACA-CAGG
1 CACTAAGCCTGCTAGGCACTAAGCCTGAATAACATC-GA
** * * *
26262400 CACTAAGCCTATTAGGCAGTAAGCCTGGATAACATCGG
1 CACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGA
* * * *
26262438 CACTAAGCCTGCTAAGCTCTAAGTCTGAATAACACCGA
1 CACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGA
* * *
26262476 CACTAAGCCTGCTAGGCACTGAGCCTGAATAACACCGG
1 CACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGA
* * * *
26262514 GACTAAGCTTACTAGGCACTAAGCTTGAAT
1 CACTAAGCCTGCTAGGCACTAAGCCTGAAT
26262544 TTGACCTCAT
Statistics
Matches: 149, Mismatches: 31, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
37 1 0.01
38 147 0.99
39 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (38 bp):
CACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGA
Found at i:26262442 original size:76 final size:75
Alignment explanation
Indices: 26262313--26262543 Score: 257
Period size: 76 Copynumber: 3.0 Consensus size: 75
26262303 AATAAGTCTA
* * * * *
26262313 AATAACACTGGCACTAAACCTGCTAGGCATTAAGCCAGAATAACATCGACACTAAGCCTGCTAGA
1 AATAACACAGGCACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGGCACTAAGCCTGCTAGA
26262378 CACTAAGCATG
66 CACTAAGC-TG
** * *
26262389 AATAACACAGGCACTAAGCCTATTAGGCAGTAAGCCTGGATAACATCGGCACTAAGCCTGCTA-A
1 AATAACACAGGCACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGGCACTAAGCCTGCTAGA
*
26262453 GCTCTAAGTCTG
66 -CACTAAG-CTG
* * * * * * * *
26262465 AATAACACCGACACTAAGCCTGCTAGGCACTGAGCCTGAATAACACCGGGACTAAGCTTACTAGG
1 AATAACACAGGCACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGGCACTAAGCCTGCTAGA
26262530 CACTAAGCTTG
66 CACTAAGC-TG
26262541 AAT
1 AAT
26262544 TTGACCTCAT
Statistics
Matches: 129, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
75 2 0.02
76 126 0.98
77 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.19
Consensus pattern (75 bp):
AATAACACAGGCACTAAGCCTGCTAGGCACTAAGCCTGAATAACATCGGCACTAAGCCTGCTAGA
CACTAAGCTG
Found at i:26262519 original size:114 final size:114
Alignment explanation
Indices: 26262314--26262537 Score: 299
Period size: 114 Copynumber: 2.0 Consensus size: 114
26262304 ATAAGTCTAA
* *
26262314 ATAACACTGGCACTAAACCTGCTAGGCATTAAGCCAGAATAACATCGACACTAAGCCTGCTAGAC
1 ATAACACTGGCACTAAACCTGCTAAGCATTAAGCCAGAATAACACCGACACTAAGCCTGCTAGAC
* *
26262379 ACTAAGCATGAATAACACAGGCACTAAGCCTATTAGGCAGTAAGCCTGG
66 ACTAAGCATGAATAACACAGGCACTAAGCCTACTAGGCACTAAGCCTGG
* * *
26262428 ATAACA-TCGGCACTAAGCCTGCTAAGC-TCTAAGTCTGAATAACACCGACACTAAGCCTGCTAG
1 ATAACACT-GGCACTAAACCTGCTAAGCAT-TAAGCCAGAATAACACCGACACTAAGCCTGCTAG
* * * * * *
26262491 GCACTGAGCCTGAATAACACCGGGACTAAGCTTACTAGGCACTAAGC
64 ACACTAAGCATGAATAACACAGGCACTAAGCCTACTAGGCACTAAGC
26262538 TTGAATTTGA
Statistics
Matches: 95, Mismatches: 13, Indels: 4
0.85 0.12 0.04
Matches are distributed among these distances:
113 2 0.02
114 93 0.98
ACGTcount: A:0.35, C:0.27, G:0.20, T:0.19
Consensus pattern (114 bp):
ATAACACTGGCACTAAACCTGCTAAGCATTAAGCCAGAATAACACCGACACTAAGCCTGCTAGAC
ACTAAGCATGAATAACACAGGCACTAAGCCTACTAGGCACTAAGCCTGG
Found at i:26271194 original size:287 final size:287
Alignment explanation
Indices: 26270745--26271323 Score: 1113
Period size: 287 Copynumber: 2.0 Consensus size: 287
26270735 ATTTCACATC
*
26270745 AAGTCCTTGACTTATTATTCCTTTAGCAATTTAATCCCTAAACATTTAAATCATTAAAAATTACT
1 AAGTCCTTGAATTATTATTCCTTTAGCAATTTAATCCCTAAACATTTAAATCATTAAAAATTACT
*
26270810 TAACAAAATACTTATAAATAACAACAAATACTTCAAATTCATCACTTAACATCTAAAATCACAAA
66 TAACAAAATACTTATAAATAACAACAAATACTTCAAATTCATCACTTAAAATCTAAAATCACAAA
*
26270875 GATTCATCAATGGCAACATTTAAAATCTTTAACAAATTCAAAAATGAAGGTACGGGCTAGCTGGA
131 GATTCATCAATGGCAACATTTAAAATCTTTAACAAATTCAAAAACGAAGGTACGGGCTAGCTGGA
26270940 CCTAGTTGCAACGATCTCAAAAACATAAAAATTACGAGAAACGGGTTCAAAATGGACTTACATGA
196 CCTAGTTGCAACGATCTCAAAAACATAAAAATTACGAGAAACGGGTTCAAAATGGACTTACATGA
26271005 ATACATTAAAGCTTGGCCGAAGCTTCA
261 ATACATTAAAGCTTGGCCGAAGCTTCA
26271032 AAGTCCTTGAATTATTATTCCTTTAGCAATTTAATCCCTAAACATTTAAATCATTAAAAATTACT
1 AAGTCCTTGAATTATTATTCCTTTAGCAATTTAATCCCTAAACATTTAAATCATTAAAAATTACT
*
26271097 TAACAAAATACTTATAAATAACAACTAATACTTCAAATTCATCACTTAAAATCTAAAATCACAAA
66 TAACAAAATACTTATAAATAACAACAAATACTTCAAATTCATCACTTAAAATCTAAAATCACAAA
26271162 GATTCATCAATGGCAACATTTAAAATCTTTAACAAATTCAAAAACGAAGGTACGGGCTAGCTGGA
131 GATTCATCAATGGCAACATTTAAAATCTTTAACAAATTCAAAAACGAAGGTACGGGCTAGCTGGA
26271227 CCTAGTTGCAACGATCTCAAAAACATAAAAATTACGAGAAACGGGTTCAAAATGGACTTACATGA
196 CCTAGTTGCAACGATCTCAAAAACATAAAAATTACGAGAAACGGGTTCAAAATGGACTTACATGA
*
26271292 ATACATTGAAGCTTGGCCGAAGCTTCA
261 ATACATTAAAGCTTGGCCGAAGCTTCA
26271319 AAGTC
1 AAGTC
26271324 TTTAACAATG
Statistics
Matches: 287, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
287 287 1.00
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.28
Consensus pattern (287 bp):
AAGTCCTTGAATTATTATTCCTTTAGCAATTTAATCCCTAAACATTTAAATCATTAAAAATTACT
TAACAAAATACTTATAAATAACAACAAATACTTCAAATTCATCACTTAAAATCTAAAATCACAAA
GATTCATCAATGGCAACATTTAAAATCTTTAACAAATTCAAAAACGAAGGTACGGGCTAGCTGGA
CCTAGTTGCAACGATCTCAAAAACATAAAAATTACGAGAAACGGGTTCAAAATGGACTTACATGA
ATACATTAAAGCTTGGCCGAAGCTTCA
Found at i:26271672 original size:12 final size:12
Alignment explanation
Indices: 26271655--26271687 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
26271645 AACACTCCGT
26271655 AAATATTTATAA
1 AAATATTTATAA
26271667 AAATATTTATAA
1 AAATATTTATAA
26271679 AAATATTTA
1 AAATATTTA
26271688 CGGTTCTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
AAATATTTATAA
Found at i:26271977 original size:15 final size:15
Alignment explanation
Indices: 26271957--26271985 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
26271947 ACTAAGCCTG
26271957 AATAACACCGGCACT
1 AATAACACCGGCACT
26271972 AATAACACCGGCAC
1 AATAACACCGGCAC
26271986 CAAGCCTGCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.34, G:0.14, T:0.10
Consensus pattern (15 bp):
AATAACACCGGCACT
Found at i:26272044 original size:38 final size:38
Alignment explanation
Indices: 26271972--26272046 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 38
26271962 CACCGGCACT
* * *
26271972 AATAACACCGGCACCAAGCCTGCTAGGCACTAAGCCTA
1 AATAACACCAGCACAAAGCCTGCTAAGCACTAAGCCTA
* * *
26272010 AATAACATCAGCACAAAGCCTGCTAATCATTAAGCCT
1 AATAACACCAGCACAAAGCCTGCTAAGCACTAAGCCT
26272047 GAATTTCACC
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 31 1.00
ACGTcount: A:0.37, C:0.31, G:0.15, T:0.17
Consensus pattern (38 bp):
AATAACACCAGCACAAAGCCTGCTAAGCACTAAGCCTA
Found at i:26281247 original size:44 final size:46
Alignment explanation
Indices: 26281163--26281252 Score: 112
Period size: 44 Copynumber: 2.0 Consensus size: 46
26281153 TTAACCTAGA
***
26281163 AAAAAAAGAAATTTTAAAAAAAAGAGAAGATAATTTTGGGTTGTTG
1 AAAAAAAGAAATTTTAAAAAAAAGAGAAGATAAACATGGGTTGTTG
** *
26281209 AAAAAAA-AAA-TTTAAAAGGAGGAGAAGATAAACATGGGTTGTTG
1 AAAAAAAGAAATTTTAAAAAAAAGAGAAGATAAACATGGGTTGTTG
26281253 GATTTACCCT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 28 0.74
45 3 0.08
46 7 0.18
ACGTcount: A:0.52, C:0.01, G:0.22, T:0.24
Consensus pattern (46 bp):
AAAAAAAGAAATTTTAAAAAAAAGAGAAGATAAACATGGGTTGTTG
Found at i:26289297 original size:18 final size:18
Alignment explanation
Indices: 26289276--26289336 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
26289266 AGATTGTTCA
26289276 CCACATTTGGACTATTTG
1 CCACATTTGGACTATTTG
* * *
26289294 CCACATTTGGATTGTTCG
1 CCACATTTGGACTATTTG
*
26289312 CCACATTTGGACTATCTG
1 CCACATTTGGACTATTTG
26289330 CCACATT
1 CCACATT
26289337 GGCTTGCACT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.21, C:0.26, G:0.16, T:0.36
Consensus pattern (18 bp):
CCACATTTGGACTATTTG
Found at i:26289307 original size:36 final size:36
Alignment explanation
Indices: 26289267--26289336 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
26289257 GCCACTCTTA
*
26289267 GATTGTTCACCACATTTGGACTATTTGCCACATTTG
1 GATTGTTCACCACATTTGGACTATCTGCCACATTTG
*
26289303 GATTGTTCGCCACATTTGGACTATCTGCCACATT
1 GATTGTTCACCACATTTGGACTATCTGCCACATT
26289337 GGCTTGCACT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.21, C:0.24, G:0.17, T:0.37
Consensus pattern (36 bp):
GATTGTTCACCACATTTGGACTATCTGCCACATTTG
Found at i:26289394 original size:29 final size:29
Alignment explanation
Indices: 26289317--26289414 Score: 92
Period size: 29 Copynumber: 3.4 Consensus size: 29
26289307 GTTCGCCACA
* * * *
26289317 TTTGGACTATCTGCCACATTGGCTTGCAC
1 TTTGGATTGTCTGCCACTTTGGCTTGTAC
* * *
26289346 -TAGGATTGT-TCACCATTTTGGCTTGTAC
1 TTTGGATTGTCT-GCCACTTTGGCTTGTAC
26289374 TTTGGATTGTCTGCCACTTTGGCTTGTAC
1 TTTGGATTGTCTGCCACTTTGGCTTGTAC
*
26289403 TTTTGGCTTGTC
1 -TTTGGATTGTC
26289415 CACCACTGTT
Statistics
Matches: 54, Mismatches: 11, Indels: 7
0.75 0.15 0.10
Matches are distributed among these distances:
27 1 0.02
28 19 0.35
29 23 0.43
30 11 0.20
ACGTcount: A:0.13, C:0.21, G:0.22, T:0.43
Consensus pattern (29 bp):
TTTGGATTGTCTGCCACTTTGGCTTGTAC
Found at i:26289421 original size:30 final size:29
Alignment explanation
Indices: 26289330--26289421 Score: 96
Period size: 29 Copynumber: 3.2 Consensus size: 29
26289320 GGACTATCTG
* * * *
26289330 CCACATTGGCTTGCAC-TAGGATTGTTCA
1 CCACTTTGGCTTGTACTTTGGATTGTCCA
* **
26289358 CCATTTTGGCTTGTACTTTGGATTGTCTG
1 CCACTTTGGCTTGTACTTTGGATTGTCCA
*
26289387 CCACTTTGGCTTGTACTTTTGGCTTGTCCA
1 CCACTTTGGCTTGTAC-TTTGGATTGTCCA
26289417 CCACT
1 CCACT
26289422 GTTGCATGGT
Statistics
Matches: 51, Mismatches: 11, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
28 13 0.25
29 23 0.45
30 15 0.29
ACGTcount: A:0.14, C:0.25, G:0.21, T:0.40
Consensus pattern (29 bp):
CCACTTTGGCTTGTACTTTGGATTGTCCA
Found at i:26292319 original size:43 final size:43
Alignment explanation
Indices: 26292253--26292370 Score: 150
Period size: 43 Copynumber: 2.7 Consensus size: 43
26292243 CTCGTACAAC
* *
26292253 GCCAATGTCCCAGACGTGGTCTTACATG-TAATCACAAATCGAT
1 GCCAATGTCCCAGACGTGGTCTTACACGAAAAT-ACAAATCGAT
* *
26292296 GCCATTGTCCCAGACAG-GGTCTTACACGAAAATACAAGTCGAT
1 GCCAATGTCCCAGAC-GTGGTCTTACACGAAAATACAAATCGAT
* *
26292339 GCCAATGTCCCAGACGTGCTATTACACGAAAA
1 GCCAATGTCCCAGACGTGGTCTTACACGAAAA
26292371 CACTTATCAG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
42 1 0.02
43 60 0.92
44 4 0.06
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.22
Consensus pattern (43 bp):
GCCAATGTCCCAGACGTGGTCTTACACGAAAATACAAATCGAT
Found at i:26293043 original size:26 final size:25
Alignment explanation
Indices: 26292989--26293045 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 25
26292979 ATCAAACAAA
* *
26292989 AAAAATCACAAGATATCATCAATGG
1 AAAAATCACAAAATATCATCAATGC
*
26293014 AAAAA-CACAAAATCATCATCAAATTC
1 AAAAATCACAAAAT-ATCATC-AATGC
26293040 AAAAAT
1 AAAAAT
26293046 TAAGACATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
24 7 0.27
25 11 0.42
26 8 0.31
ACGTcount: A:0.58, C:0.18, G:0.05, T:0.19
Consensus pattern (25 bp):
AAAAATCACAAAATATCATCAATGC
Found at i:26294887 original size:28 final size:28
Alignment explanation
Indices: 26294814--26294888 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
26294804 CGGACTATCT
* * * *
26294814 GTCACATTGGCTTGCACTGGGATTGTTC
1 GTCACTTTGGCTTGTACTTGGACTGTTC
* *
26294842 GCCACTTTGGCTTATACTTGGACTGTTC
1 GTCACTTTGGCTTGTACTTGGACTGTTC
26294870 GTCACTTTGGCTTGTACTT
1 GTCACTTTGGCTTGTACTT
26294889 TGGATTATCC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.13, C:0.23, G:0.24, T:0.40
Consensus pattern (28 bp):
GTCACTTTGGCTTGTACTTGGACTGTTC
Found at i:26296456 original size:48 final size:48
Alignment explanation
Indices: 26296383--26296482 Score: 173
Period size: 48 Copynumber: 2.1 Consensus size: 48
26296373 GAGAGCTGTA
**
26296383 AGAATGTGAATGACAATAACATATTGCAAACATCAAATAGCTTGTCAG
1 AGAATGTGAATGACAATAACATATTGCAAACATCAAATAGCCGGTCAG
*
26296431 AGAATGTGAATGACAATAACGTATTGCAAACATCAAATAGCCGGTCAG
1 AGAATGTGAATGACAATAACATATTGCAAACATCAAATAGCCGGTCAG
26296479 AGAA
1 AGAA
26296483 AGAGTCCCAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (48 bp):
AGAATGTGAATGACAATAACATATTGCAAACATCAAATAGCCGGTCAG
Found at i:26296658 original size:14 final size:14
Alignment explanation
Indices: 26296639--26296668 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26296629 ATCATTGTGA
26296639 TTATCAAACATTTC
1 TTATCAAACATTTC
26296653 TTATCAAACATTTC
1 TTATCAAACATTTC
26296667 TT
1 TT
26296669 TCTTCGTATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.47
Consensus pattern (14 bp):
TTATCAAACATTTC
Found at i:26299994 original size:25 final size:25
Alignment explanation
Indices: 26299966--26300015 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
26299956 ATCACCTTTC
* *
26299966 ACTTTCACTATTTTGTTCACTTAAT
1 ACTTTCACTATCTTGTGCACTTAAT
26299991 ACTTTCACTATCTTGTGCACTTAAT
1 ACTTTCACTATCTTGTGCACTTAAT
26300016 GTTTCATTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.06, T:0.48
Consensus pattern (25 bp):
ACTTTCACTATCTTGTGCACTTAAT
Found at i:26306656 original size:14 final size:14
Alignment explanation
Indices: 26306639--26306670 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
26306629 ATAATAATGA
*
26306639 TAAACTAATTAAAT
1 TAAACTAATTAAAC
26306653 TAAACTAATTAAAC
1 TAAACTAATTAAAC
26306667 TAAA
1 TAAA
26306671 GCTACCCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAACTAATTAAAC
Found at i:26308875 original size:16 final size:17
Alignment explanation
Indices: 26308844--26308876 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26308834 GGGGATGGCA
26308844 TTGTTTGATGTTTATTT
1 TTGTTTGATGTTTATTT
26308861 TTGTTTGAT-TTTATTT
1 TTGTTTGATGTTTATTT
26308877 CATAATATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.12, C:0.00, G:0.15, T:0.73
Consensus pattern (17 bp):
TTGTTTGATGTTTATTT
Found at i:26315190 original size:20 final size:22
Alignment explanation
Indices: 26315145--26315191 Score: 57
Period size: 20 Copynumber: 2.3 Consensus size: 22
26315135 AATTTTATTT
*
26315145 TTATTTTAGTTTTTTTTGTTAA
1 TTATTTTAGTTCTTTTTGTTAA
26315167 --ATTTT-GTTCTTTTT-TTAA
1 TTATTTTAGTTCTTTTTGTTAA
26315185 TTATTTT
1 TTATTTT
26315192 TATTTTTGCA
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
18 4 0.18
19 8 0.36
20 10 0.45
ACGTcount: A:0.17, C:0.02, G:0.06, T:0.74
Consensus pattern (22 bp):
TTATTTTAGTTCTTTTTGTTAA
Found at i:26325952 original size:27 final size:27
Alignment explanation
Indices: 26325900--26325952 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
26325890 AATGATTTTA
*
26325900 AAATTTTTTAAATAATTTTTATTATTGG
1 AAATTTTTT-AATAATTTTTAATATTGG
26325928 AAATTTTTT-ATAATTTTATAATATT
1 AAATTTTTTAATAATTTT-TAATATT
26325953 TCTAGAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
26 8 0.35
27 6 0.26
28 9 0.39
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (27 bp):
AAATTTTTTAATAATTTTTAATATTGG
Found at i:26331910 original size:2 final size:2
Alignment explanation
Indices: 26331905--26331936 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
26331895 CGCGCGCGCG
26331905 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
26331937 TAGAGAAAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:26333658 original size:12 final size:12
Alignment explanation
Indices: 26333639--26333708 Score: 68
Period size: 12 Copynumber: 5.8 Consensus size: 12
26333629 TCGTTTTAAG
*
26333639 CTCATTTATTGG
1 CTCATTTATTGA
* **
26333651 CTCGTTTATAAA
1 CTCATTTATTGA
26333663 CTCATTTATTGA
1 CTCATTTATTGA
* **
26333675 CTCGTTTATAAA
1 CTCATTTATTGA
26333687 CTCATTTATTGA
1 CTCATTTATTGA
*
26333699 CTCGTTTATT
1 CTCATTTATT
26333709 TATTAATGAT
Statistics
Matches: 44, Mismatches: 14, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
12 44 1.00
ACGTcount: A:0.24, C:0.17, G:0.10, T:0.49
Consensus pattern (12 bp):
CTCATTTATTGA
Found at i:26333668 original size:24 final size:24
Alignment explanation
Indices: 26333629--26333707 Score: 133
Period size: 24 Copynumber: 3.3 Consensus size: 24
26333619 TGTGTTCGGT
* *
26333629 TCGTTT-TAAGCTCATTTATTGGC
1 TCGTTTATAAACTCATTTATTGAC
26333652 TCGTTTATAAACTCATTTATTGAC
1 TCGTTTATAAACTCATTTATTGAC
26333676 TCGTTTATAAACTCATTTATTGAC
1 TCGTTTATAAACTCATTTATTGAC
26333700 TCGTTTAT
1 TCGTTTAT
26333708 TTATTAATGA
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
23 6 0.11
24 47 0.89
ACGTcount: A:0.24, C:0.16, G:0.11, T:0.48
Consensus pattern (24 bp):
TCGTTTATAAACTCATTTATTGAC
Found at i:26338695 original size:19 final size:18
Alignment explanation
Indices: 26338659--26338698 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26338649 TTTCCACTCG
*
26338659 TTTCTTTTTCAACTTCTC
1 TTTCTTTTTCAACATCTC
*
26338677 TTTCTTTTTCCACAATCTC
1 TTTCTTTTTCAAC-ATCTC
26338696 TTT
1 TTT
26338699 GTTTGTTGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.12, C:0.28, G:0.00, T:0.60
Consensus pattern (18 bp):
TTTCTTTTTCAACATCTC
Found at i:26338830 original size:18 final size:17
Alignment explanation
Indices: 26338771--26338831 Score: 59
Period size: 18 Copynumber: 3.4 Consensus size: 17
26338761 GCACTCTTTC
*
26338771 TTTTCTTTCTCCAATCTTT
1 TTTTCTTT-TTCAAT-TTT
*
26338790 TTCTCTTTTTCAATTTT
1 TTTTCTTTTTCAATTTT
*
26338807 TGTTTCTTTTTCAGTTTCT
1 T-TTTCTTTTTCAATTT-T
26338826 TTTTCT
1 TTTTCT
26338832 CTCGTCACTC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 4 0.11
18 23 0.64
19 9 0.25
ACGTcount: A:0.08, C:0.20, G:0.03, T:0.69
Consensus pattern (17 bp):
TTTTCTTTTTCAATTTT
Found at i:26339864 original size:12 final size:12
Alignment explanation
Indices: 26339816--26339866 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
26339806 ATAGAAACTA
*
26339816 AATTTTTTTTTA
1 AATTTTTTTTTG
*
26339828 AATTTTTTTTCG
1 AATTTTTTTTTG
*
26339840 ATTTTTTTTTTTG
1 A-ATTTTTTTTTG
26339853 AATTTTTTTTTG
1 AATTTTTTTTTG
26339865 AA
1 AA
26339867 GATGCTACTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
12 23 0.70
13 10 0.30
ACGTcount: A:0.20, C:0.02, G:0.06, T:0.73
Consensus pattern (12 bp):
AATTTTTTTTTG
Found at i:26342141 original size:23 final size:22
Alignment explanation
Indices: 26342091--26342194 Score: 93
Period size: 23 Copynumber: 4.5 Consensus size: 22
26342081 ACATTGTCCG
*
26342091 TGAACATGTTCAACTATATGTTCA
1 TGAACATGTTC-A-TTTATGTTCA
*
26342115 TGAACATGTTCATTTAGTGTTCG
1 TGAACATGTTCATTTA-TGTTCA
* *
26342138 TGAACATATTCGTTTAATGTTCA
1 TGAACATGTTCATTT-ATGTTCA
* *
26342161 TGAACATGTTCGA-TTAAGTTAAA
1 TGAACATGTTC-ATTTATGTT-CA
26342184 TGAACATGTTC
1 TGAACATGTTC
26342195 TTGAACATTA
Statistics
Matches: 67, Mismatches: 9, Indels: 9
0.79 0.11 0.11
Matches are distributed among these distances:
22 7 0.10
23 48 0.72
24 12 0.18
ACGTcount: A:0.31, C:0.13, G:0.16, T:0.39
Consensus pattern (22 bp):
TGAACATGTTCATTTATGTTCA
Found at i:26349309 original size:23 final size:23
Alignment explanation
Indices: 26349241--26349342 Score: 98
Period size: 23 Copynumber: 4.4 Consensus size: 23
26349231 CTCAAGGGCG
* *
26349241 TTACAGAACACGCCACATAGGCA
1 TTACAGAACACGCCACAAAGGCT
* * *
26349264 TCATAGAATACGCCACAAAGGCT
1 TTACAGAACACGCCACAAAGGCT
* * *
26349287 TTACAGAATATGCCACACAGGCT
1 TTACAGAACACGCCACAAAGGCT
* *
26349310 TTACCA-AACAAGTCACAAAGGCT
1 TTA-CAGAACACGCCACAAAGGCT
26349333 TTACAGAACA
1 TTACAGAACA
26349343 TTACATGTTT
Statistics
Matches: 64, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
22 2 0.03
23 60 0.94
24 2 0.03
ACGTcount: A:0.40, C:0.26, G:0.16, T:0.18
Consensus pattern (23 bp):
TTACAGAACACGCCACAAAGGCT
Found at i:26352900 original size:10 final size:10
Alignment explanation
Indices: 26352885--26352935 Score: 52
Period size: 10 Copynumber: 5.1 Consensus size: 10
26352875 TTGGGTTAAG
26352885 ATTGAGCTGA
1 ATTGAGCTGA
26352895 ATTGAGCTCGA
1 ATTGAGCT-GA
26352906 A-TGAGCTGA
1 ATTGAGCTGA
*
26352915 CTTGAGCTCG-
1 ATTGAGCT-GA
*
26352925 AGTGAGCTGA
1 ATTGAGCTGA
26352935 A
1 A
26352936 CTAAGTTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
9 3 0.09
10 27 0.79
11 4 0.12
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.25
Consensus pattern (10 bp):
ATTGAGCTGA
Found at i:26352910 original size:20 final size:20
Alignment explanation
Indices: 26352887--26352935 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
26352877 GGGTTAAGAT
26352887 TGAGCTGAATTGAGCTCGAA
1 TGAGCTGAATTGAGCTCGAA
* *
26352907 TGAGCTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAA
26352927 TGAGCTGAA
1 TGAGCTGAA
26352936 CTAAGTTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.27, C:0.16, G:0.33, T:0.24
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAA
Found at i:26357150 original size:20 final size:21
Alignment explanation
Indices: 26357127--26357177 Score: 70
Period size: 20 Copynumber: 2.5 Consensus size: 21
26357117 GGGTTAAGAT
26357127 TGAGCTGAA-TTGAGCTCGAA
1 TGAGCTGAACTTGAGCTCGAA
* *
26357147 TGAGCT-AACTTGAGCTTGAG
1 TGAGCTGAACTTGAGCTCGAA
26357167 TGAGCTGAACT
1 TGAGCTGAACT
26357178 AAATTAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 21 0.78
21 4 0.15
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.27
Consensus pattern (21 bp):
TGAGCTGAACTTGAGCTCGAA
Found at i:26359846 original size:15 final size:16
Alignment explanation
Indices: 26359826--26359855 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26359816 CTAAATAGTG
26359826 AATTTTTTTC-ATTTT
1 AATTTTTTTCTATTTT
26359841 AATTTTTTTCTATTT
1 AATTTTTTTCTATTT
26359856 CATATTATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.73
Consensus pattern (16 bp):
AATTTTTTTCTATTTT
Found at i:26367217 original size:396 final size:396
Alignment explanation
Indices: 26366485--26367281 Score: 1576
Period size: 396 Copynumber: 2.0 Consensus size: 396
26366475 TCATTCTCAT
26366485 TTGAAGAATGAATCAATTGTTGTGGTTGTAATTGTCTTGATATAGAATTAAATCTATTTTCATCA
1 TTGAAGAATGAATCAATTGTTGTGGTTGTAATTGTCTTGATATAGAATTAAATCTATTTTCATCA
26366550 AAAATAGCATCTCTTGATTCAATAACCGTATTAATTGAAATTGAATCATTTGGTTCAATTACTAT
66 AAAATAGCATCTCTTGATTCAATAACCGTATTAATTGAAATTGAATCATTTGGTTCAATTACTAT
26366615 GAACCTATATGCCTTGCTATTATGTGCATAACCTATAAATATGCATTCAATTCCTCTTTCACCTA
131 GAACCTATATGCCTTGCTATTATGTGCATAACCTATAAATATGCATTCAATTCCTCTTTCACCTA
26366680 ACTTTTTACGTTTAGGTGTTGGAACTTTTACAATAGCTCTACAACCCCAAACCTTTAAATAATTA
196 ACTTTTTACGTTTAGGTGTTGGAACTTTTACAATAGCTCTACAACCCCAAACCTTTAAATAATTA
26366745 AAGTTTGGTTTCCTTTTCTTCCATTGTTCATAGGGGGTTATTTTAGTTTCCTTATTAGGAACTCT
261 AAGTTTGGTTTCCTTTTCTTCCATTGTTCATAGGGGGTTATTTTAGTTTCCTTATTAGGAACTCT
26366810 ATTCAATATATGACAAGCTGTTAGAACAGCTTCTCCCCAAAAACCCTGTCCAAGACCTGAATATG
326 ATTCAATATATGACAAGCTGTTAGAACAGCTTCTCCCCAAAAACCCTGTCCAAGACCTGAATATG
26366875 ATAACA
391 ATAACA
26366881 TTGAAGAATGAATCAATTGTTGTGGTTGTAATTGTCTTGATATAGAATTAAATCTATTTTCATCA
1 TTGAAGAATGAATCAATTGTTGTGGTTGTAATTGTCTTGATATAGAATTAAATCTATTTTCATCA
*
26366946 AAAATAGCATCTCTTGATTTAATAACCGTATTAATTGAAATTGAATCATTTGGTTCAATTACTAT
66 AAAATAGCATCTCTTGATTCAATAACCGTATTAATTGAAATTGAATCATTTGGTTCAATTACTAT
26367011 GAACCTATATGCCTTGCTATTATGTGCATAACCTATAAATATGCATTCAATTCCTCTTTCACCTA
131 GAACCTATATGCCTTGCTATTATGTGCATAACCTATAAATATGCATTCAATTCCTCTTTCACCTA
26367076 ACTTTTTACGTTTAGGTGTTGGAACTTTTACAATAGCTCTACAACCCCAAACCTTTAAATAATTA
196 ACTTTTTACGTTTAGGTGTTGGAACTTTTACAATAGCTCTACAACCCCAAACCTTTAAATAATTA
*
26367141 AGGTTTGGTTTCCTTTTCTTCCATTGTTCATAGGGGGTTATTTTAGTTTCCTTATTAGGAACTCT
261 AAGTTTGGTTTCCTTTTCTTCCATTGTTCATAGGGGGTTATTTTAGTTTCCTTATTAGGAACTCT
26367206 ATTCAATATATGACAAGCTGTTAGAACAGCTTCTCCCCAAAAACCCTGTCCAAGACCTGAATATG
326 ATTCAATATATGACAAGCTGTTAGAACAGCTTCTCCCCAAAAACCCTGTCCAAGACCTGAATATG
26367271 ATAACA
391 ATAACA
26367277 TTGAA
1 TTGAA
26367282 TTTACCATTT
Statistics
Matches: 399, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
396 399 1.00
ACGTcount: A:0.31, C:0.18, G:0.13, T:0.38
Consensus pattern (396 bp):
TTGAAGAATGAATCAATTGTTGTGGTTGTAATTGTCTTGATATAGAATTAAATCTATTTTCATCA
AAAATAGCATCTCTTGATTCAATAACCGTATTAATTGAAATTGAATCATTTGGTTCAATTACTAT
GAACCTATATGCCTTGCTATTATGTGCATAACCTATAAATATGCATTCAATTCCTCTTTCACCTA
ACTTTTTACGTTTAGGTGTTGGAACTTTTACAATAGCTCTACAACCCCAAACCTTTAAATAATTA
AAGTTTGGTTTCCTTTTCTTCCATTGTTCATAGGGGGTTATTTTAGTTTCCTTATTAGGAACTCT
ATTCAATATATGACAAGCTGTTAGAACAGCTTCTCCCCAAAAACCCTGTCCAAGACCTGAATATG
ATAACA
Found at i:26376208 original size:18 final size:18
Alignment explanation
Indices: 26376162--26376221 Score: 54
Period size: 18 Copynumber: 3.3 Consensus size: 18
26376152 CCAAGATAAT
*
26376162 GAAAAATAATAAATTTAAA
1 GAAAAATAATTAA-TTAAA
26376181 -AATAAA-AATTAATTAAA
1 GAA-AAATAATTAATTAAA
26376198 GAAAAATAATTTAA-TAAA
1 GAAAAATAA-TTAATTAAA
*
26376216 TAAAAA
1 GAAAAA
26376222 ATAAACTAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
17 8 0.23
18 20 0.57
19 7 0.20
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (18 bp):
GAAAAATAATTAATTAAA
Found at i:26379505 original size:17 final size:18
Alignment explanation
Indices: 26379485--26379520 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
26379475 ATTTTAAAGT
26379485 TTTTAAGTT-GGTATTGA
1 TTTTAAGTTGGGTATTGA
*
26379502 TTTTATGTTGGGTATTGA
1 TTTTAAGTTGGGTATTGA
26379520 T
1 T
26379521 GTTGTATCGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (18 bp):
TTTTAAGTTGGGTATTGA
Found at i:26379505 original size:18 final size:19
Alignment explanation
Indices: 26379484--26379520 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
26379474 AATTTTAAAG
26379484 TTTTTAAGTT-GGTATTGA
1 TTTTTAAGTTGGGTATTGA
*
26379502 -TTTTATGTTGGGTATTGA
1 TTTTTAAGTTGGGTATTGA
26379520 T
1 T
26379521 GTTGTATCGG
Statistics
Matches: 16, Mismatches: 1, Indels: 3
0.80 0.05 0.15
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.19, C:0.00, G:0.24, T:0.57
Consensus pattern (19 bp):
TTTTTAAGTTGGGTATTGA
Found at i:26382725 original size:24 final size:24
Alignment explanation
Indices: 26382689--26382738 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
26382679 TTAGTCCTTT
*
26382689 TCTCAATTCTAAACTTAAAATCTA
1 TCTCAATTATAAACTTAAAATCTA
*
26382713 TCTCAGTTATAAACTTAAAATCTA
1 TCTCAATTATAAACTTAAAATCTA
26382737 TC
1 TC
26382739 ACTTTAACCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.20, G:0.02, T:0.38
Consensus pattern (24 bp):
TCTCAATTATAAACTTAAAATCTA
Found at i:26385594 original size:18 final size:19
Alignment explanation
Indices: 26385558--26385602 Score: 65
Period size: 18 Copynumber: 2.4 Consensus size: 19
26385548 CTAATTGGTT
*
26385558 TTTTTATTTCTTTTGTTTA
1 TTTTTATTTCTTTTATTTA
*
26385577 TTTTTCTTTC-TTTATTTA
1 TTTTTATTTCTTTTATTTA
26385595 TTTTTATT
1 TTTTTATT
26385603 CTATCAACTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 14 0.61
19 9 0.39
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.80
Consensus pattern (19 bp):
TTTTTATTTCTTTTATTTA
Found at i:26396880 original size:45 final size:45
Alignment explanation
Indices: 26396816--26396952 Score: 274
Period size: 45 Copynumber: 3.0 Consensus size: 45
26396806 TAGCTAACGC
26396816 CGTACCGGAATCCTCGGGTAAAAAGGAGAAGGATAAAATCGACGT
1 CGTACCGGAATCCTCGGGTAAAAAGGAGAAGGATAAAATCGACGT
26396861 CGTACCGGAATCCTCGGGTAAAAAGGAGAAGGATAAAATCGACGT
1 CGTACCGGAATCCTCGGGTAAAAAGGAGAAGGATAAAATCGACGT
26396906 CGTACCGGAATCCTCGGGTAAAAAGGAGAAGGATAAAATCGACGT
1 CGTACCGGAATCCTCGGGTAAAAAGGAGAAGGATAAAATCGACGT
26396951 CG
1 CG
26396953 AATAGCTCAA
Statistics
Matches: 92, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 92 1.00
ACGTcount: A:0.37, C:0.18, G:0.29, T:0.15
Consensus pattern (45 bp):
CGTACCGGAATCCTCGGGTAAAAAGGAGAAGGATAAAATCGACGT
Found at i:26397565 original size:18 final size:19
Alignment explanation
Indices: 26397542--26397579 Score: 69
Period size: 18 Copynumber: 2.1 Consensus size: 19
26397532 GAAATGACAA
26397542 AGATGAGAAATG-AATATG
1 AGATGAGAAATGAAATATG
26397560 AGATGAGAAATGAAATATG
1 AGATGAGAAATGAAATATG
26397579 A
1 A
26397580 AAAGATGAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 12 0.63
19 7 0.37
ACGTcount: A:0.53, C:0.00, G:0.26, T:0.21
Consensus pattern (19 bp):
AGATGAGAAATGAAATATG
Found at i:26398918 original size:49 final size:49
Alignment explanation
Indices: 26398837--26398930 Score: 152
Period size: 49 Copynumber: 1.9 Consensus size: 49
26398827 TCAAGAAGGG
* * *
26398837 ATAAATAGTGATAAGAGTGTAGATAGTGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAAAGTGTAGACAGTGGAAGACCAAGTTTAGCAATGT
*
26398886 ATAAATAGTGATAAAAGTGTAGACAGTTGAAGACCAAGTTTAGCA
1 ATAAATAGTGATAAAAGTGTAGACAGTGGAAGACCAAGTTTAGCA
26398931 TTGCATAGCA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 41 1.00
ACGTcount: A:0.43, C:0.06, G:0.24, T:0.27
Consensus pattern (49 bp):
ATAAATAGTGATAAAAGTGTAGACAGTGGAAGACCAAGTTTAGCAATGT
Found at i:26400971 original size:20 final size:20
Alignment explanation
Indices: 26400946--26400986 Score: 66
Period size: 20 Copynumber: 2.0 Consensus size: 20
26400936 ACCACCTAAA
26400946 ACTAAAACAA-CATCAAAAAC
1 ACTAAAACAAGCAT-AAAAAC
26400966 ACTAAAACAAGCATAAAAAC
1 ACTAAAACAAGCATAAAAAC
26400986 A
1 A
26400987 TAACTAGTCC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.66, C:0.22, G:0.02, T:0.10
Consensus pattern (20 bp):
ACTAAAACAAGCATAAAAAC
Found at i:26401618 original size:16 final size:16
Alignment explanation
Indices: 26401597--26401633 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
26401587 TTGGTTCGCT
26401597 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
26401613 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
26401629 GTAAT
1 GTAAT
26401634 AGGTAATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.38, C:0.05, G:0.35, T:0.22
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:26401697 original size:44 final size:46
Alignment explanation
Indices: 26401615--26401707 Score: 145
Period size: 44 Copynumber: 2.1 Consensus size: 46
26401605 ATAGAGGCGT
* *
26401615 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATAG
1 AATGGAATAGAGGCATAATAGGTAATTCTTGTGTTTGGTTGAATAG
*
26401661 AATGGAATAGAGGCATAAT-GGT-ATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAGGCATAATAGGTAATTCTTGTGTTTGGTTGAATAG
26401705 AAT
1 AAT
26401708 AGAGGTGTAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 23 0.52
45 3 0.07
46 18 0.41
ACGTcount: A:0.30, C:0.04, G:0.29, T:0.37
Consensus pattern (46 bp):
AATGGAATAGAGGCATAATAGGTAATTCTTGTGTTTGGTTGAATAG
Found at i:26401703 original size:39 final size:44
Alignment explanation
Indices: 26401615--26401712 Score: 125
Period size: 46 Copynumber: 2.3 Consensus size: 44
26401605 ATAGAGGCGT
* *
26401615 AATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAATAG
1 AATGGAATAGAGGCATAATAGGTAATTCTTGTGTTTGGTT--ATAG
26401661 AATGGAATAGAGGCATAAT-GGT-ATTCTTGTGTTTGG-T-T-G
1 AATGGAATAGAGGCATAATAGGTAATTCTTGTGTTTGGTTATAG
26401700 AATGGAATAGAGG
1 AATGGAATAGAGG
26401713 TGTAATAGCA
Statistics
Matches: 50, Mismatches: 2, Indels: 7
0.85 0.03 0.12
Matches are distributed among these distances:
39 14 0.28
40 1 0.02
43 1 0.02
44 13 0.26
45 3 0.06
46 18 0.36
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAGGCATAATAGGTAATTCTTGTGTTTGGTTATAG
Found at i:26403456 original size:49 final size:49
Alignment explanation
Indices: 26403384--26403487 Score: 147
Period size: 49 Copynumber: 2.1 Consensus size: 49
26403374 AAAAAAAAAC
* * * *
26403384 AAATTAAAATTAAGTTTAATATCATGAATCA-AAAGGTGAACACTTTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCACAAA-CTCAACACTGTATA
*
26403433 AAATTAAAATTGAGTTCAATATCATGAATCACAAACTCAACACTGTATA
1 AAATTAAAATTAAGTTCAATATCATGAATCACAAACTCAACACTGTATA
26403482 AAATTA
1 AAATTA
26403488 TAACACATAA
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
49 46 0.94
50 3 0.06
ACGTcount: A:0.49, C:0.12, G:0.09, T:0.31
Consensus pattern (49 bp):
AAATTAAAATTAAGTTCAATATCATGAATCACAAACTCAACACTGTATA
Found at i:26405405 original size:66 final size:64
Alignment explanation
Indices: 26405246--26405422 Score: 275
Period size: 66 Copynumber: 2.7 Consensus size: 64
26405236 AATGAATATT
* *
26405246 TTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTCATATATCCAATAATTG
1 TTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATATATCAAATAATTG
* * *
26405310 TTTTCTAATCAAGTTATTTACTTGATTATATCTAATGATCCAATTTTAATATGTTAT-AAATATT
1 TTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATA---TATCAAATAAT
26405374 TG
63 TG
26405376 TTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTT
1 TTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTT
26405423 TATTTTATTT
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
64 48 0.47
66 52 0.50
67 3 0.03
ACGTcount: A:0.31, C:0.11, G:0.08, T:0.50
Consensus pattern (64 bp):
TTTTTTAATCAAGTTGTTTACTTGATTATATCTAATGATCCAATTTTAATATATCAAATAATTG
Found at i:26405580 original size:32 final size:32
Alignment explanation
Indices: 26405539--26405601 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
26405529 CAAAAATATT
26405539 TTTAATTAATGCGTTGTATATGAATATACACA
1 TTTAATTAATGCGTTGTATATGAATATACACA
26405571 TTTAATTAATGCGTTGTATATGAATATACAC
1 TTTAATTAATGCGTTGTATATGAATATACAC
26405602 TAGTGCAAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.37, C:0.10, G:0.13, T:0.41
Consensus pattern (32 bp):
TTTAATTAATGCGTTGTATATGAATATACACA
Found at i:26405838 original size:25 final size:25
Alignment explanation
Indices: 26405804--26405862 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
26405794 CAATTTACTG
26405804 GAATTGCAACTATAAAAAACCTCTT
1 GAATTGCAACTATAAAAAACCTCTT
*
26405829 GAATTGCAACTATAAAATACCTCTT
1 GAATTGCAACTATAAAAAACCTCTT
26405854 GAATTGCAA
1 GAATTGCAA
26405863 ATAGAGCTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (25 bp):
GAATTGCAACTATAAAAAACCTCTT
Found at i:26407129 original size:130 final size:130
Alignment explanation
Indices: 26406923--26407156 Score: 450
Period size: 130 Copynumber: 1.8 Consensus size: 130
26406913 GATATAAGTT
*
26406923 AAATTTCTCTTGACAGACGATTTGATTTCAGTTTCAACATATTCCAAGCCAAGACAAGCTAAAAT
1 AAATTTCCCTTGACAGACGATTTGATTTCAGTTTCAACATATTCCAAGCCAAGACAAGCTAAAAT
*
26406988 AAGTTATCATACAATTTTGTTTCATATCAATGTTATAAAGAAAATAAGTTCAAGGTAGTATATGA
66 AAGTTATCATACAATTTCGTTTCATATCAATGTTATAAAGAAAATAAGTTCAAGGTAGTATATGA
26407053 AAATTTCCCTTGACAGACGATTTGATTTCAGTTTCAACATATTCCAAGCCAAGACAAGCTAAAAT
1 AAATTTCCCTTGACAGACGATTTGATTTCAGTTTCAACATATTCCAAGCCAAGACAAGCTAAAAT
26407118 AAGTTATCATACAATTTCGTTTCATATCAATGTTATAAA
66 AAGTTATCATACAATTTCGTTTCATATCAATGTTATAAA
26407157 TAAATACCCT
Statistics
Matches: 102, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 102 1.00
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34
Consensus pattern (130 bp):
AAATTTCCCTTGACAGACGATTTGATTTCAGTTTCAACATATTCCAAGCCAAGACAAGCTAAAAT
AAGTTATCATACAATTTCGTTTCATATCAATGTTATAAAGAAAATAAGTTCAAGGTAGTATATGA
Found at i:26409715 original size:2 final size:2
Alignment explanation
Indices: 26409708--26409744 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
26409698 TTCTTTAATT
*
26409708 TC TC TC TC TC TC TC TC TC TC CC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
26409745 TTAAAATTTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49
Consensus pattern (2 bp):
TC
Found at i:26414776 original size:70 final size:70
Alignment explanation
Indices: 26414663--26414802 Score: 262
Period size: 70 Copynumber: 2.0 Consensus size: 70
26414653 TATTCAATGC
26414663 CATCACATCTAATGATATTTTGGCATTTAGTATCAGGTGCTTTTGGATTTAATGTTGGCTTTTGT
1 CATCACATCTAATGATATTTTGGCATTTAGTATCAGGTGCTTTTGGATTTAATGTTGGCTTTTGT
26414728 TAAAG
66 TAAAG
* *
26414733 CATCACATCTAATGATATTTTGGCATTTAGTATCTGGTGCTTTTGGATTTTATGTTGGCTTTTGT
1 CATCACATCTAATGATATTTTGGCATTTAGTATCAGGTGCTTTTGGATTTAATGTTGGCTTTTGT
26414798 TAAAG
66 TAAAG
26414803 TTTATTTTAA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 68 1.00
ACGTcount: A:0.23, C:0.11, G:0.20, T:0.46
Consensus pattern (70 bp):
CATCACATCTAATGATATTTTGGCATTTAGTATCAGGTGCTTTTGGATTTAATGTTGGCTTTTGT
TAAAG
Found at i:26421200 original size:16 final size:16
Alignment explanation
Indices: 26421179--26421210 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26421169 AGAACTAACG
26421179 TTTCTTTTCCTTTTCT
1 TTTCTTTTCCTTTTCT
*
26421195 TTTCTTTTCTTTTTCT
1 TTTCTTTTCCTTTTCT
26421211 ATTATCATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TTTCTTTTCCTTTTCT
Found at i:26421203 original size:10 final size:11
Alignment explanation
Indices: 26421179--26421207 Score: 51
Period size: 10 Copynumber: 2.7 Consensus size: 11
26421169 AGAACTAACG
26421179 TTTCTTTTCCT
1 TTTCTTTTCCT
26421190 TTTCTTTT-CT
1 TTTCTTTTCCT
26421200 TTTCTTTT
1 TTTCTTTT
26421208 TCTATTATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTCTTTTCCT
Found at i:26423537 original size:69 final size:70
Alignment explanation
Indices: 26423421--26423565 Score: 204
Period size: 69 Copynumber: 2.1 Consensus size: 70
26423411 TGTGCAGTGG
* *
26423421 CTAAAATGAAACTTTTTGAAATGGTACTAAAACTTGTAGTAAACTTTAACCAATTTCTACCTTGA
1 CTAAAATGAAACTTTTTGAAATGGTACTAAAACTTCTAGTAAACTTTAACCAATTTCAACCTTGA
26423486 GGAG-T
66 -GAGCT
* * ** *
26423491 CTAAAATG-AGCTTTTTGAAATGGTACTAGAACTTCTAGTATGCTTTAACCTATTTCAACCTTGA
1 CTAAAATGAAACTTTTTGAAATGGTACTAAAACTTCTAGTAAACTTTAACCAATTTCAACCTTGA
26423555 GAGCT
66 GAGCT
26423560 CTAAAA
1 CTAAAA
26423566 ACTTACGCGA
Statistics
Matches: 67, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
68 3 0.04
69 56 0.84
70 8 0.12
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.34
Consensus pattern (70 bp):
CTAAAATGAAACTTTTTGAAATGGTACTAAAACTTCTAGTAAACTTTAACCAATTTCAACCTTGA
GAGCT
Found at i:26423787 original size:15 final size:15
Alignment explanation
Indices: 26423767--26423796 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26423757 GACAAAAATA
26423767 TTAGGTTCGAAATGG
1 TTAGGTTCGAAATGG
*
26423782 TTAGGTTTGAAATGG
1 TTAGGTTCGAAATGG
26423797 GCTTGAACAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.33, T:0.37
Consensus pattern (15 bp):
TTAGGTTCGAAATGG
Found at i:26423884 original size:18 final size:19
Alignment explanation
Indices: 26423861--26423901 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
26423851 AATATTTTAT
* *
26423861 ATTATGTTATTT-TTATAC
1 ATTATGTAATTTATAATAC
26423879 ATTATGTAATTTATAATAC
1 ATTATGTAATTTATAATAC
26423898 ATTA
1 ATTA
26423902 AAATAATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.37, C:0.05, G:0.05, T:0.54
Consensus pattern (19 bp):
ATTATGTAATTTATAATAC
Found at i:26425876 original size:26 final size:25
Alignment explanation
Indices: 26425846--26425934 Score: 97
Period size: 26 Copynumber: 3.4 Consensus size: 25
26425836 TTGTTATTAA
26425846 ATTTTAATAAGATTATTATTAAATAT
1 ATTTTAATAA-ATTATTATTAAATAT
** * *
26425872 ATTTTAATAAAAAATAATTTAATCAT
1 ATTTTAATAAATTATTATTAAAT-AT
*
26425898 ATTTTAACATAATTATTATTAAATAT
1 ATTTTAATA-AATTATTATTAAATAT
*
26425924 AATTTAATAAA
1 ATTTTAATAAA
26425935 ATAATATATA
Statistics
Matches: 50, Mismatches: 11, Indels: 5
0.76 0.17 0.08
Matches are distributed among these distances:
25 11 0.22
26 29 0.58
27 10 0.20
ACGTcount: A:0.51, C:0.02, G:0.01, T:0.46
Consensus pattern (25 bp):
ATTTTAATAAATTATTATTAAATAT
Found at i:26425967 original size:57 final size:57
Alignment explanation
Indices: 26425857--26426006 Score: 170
Period size: 57 Copynumber: 2.7 Consensus size: 57
26425847 TTTTAATAAG
* * *
26425857 ATTATTATTAAATATATTTTAAT--AA-AA-A-ATAATTTAATCATATTTTAACATA
1 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAACATTTTAACATA
26425909 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAACATTCTTAA-ATA
1 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAACATT-TTAACATA
*
26425966 ATTATTATTAAAATATGAA-TTAAAAAATCATAATATATAAT
1 ATTATTATT-AAATAT-AATTTAATAAA--ATAATATATAAT
26426007 ATTATAAAAT
Statistics
Matches: 84, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
52 22 0.26
54 2 0.02
55 2 0.02
56 1 0.01
57 26 0.31
58 17 0.20
59 2 0.02
60 12 0.14
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (57 bp):
ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAACATTTTAACATA
Found at i:26436054 original size:33 final size:32
Alignment explanation
Indices: 26436009--26436090 Score: 87
Period size: 33 Copynumber: 2.6 Consensus size: 32
26435999 TAATTAATTG
*
26436009 ATAATGTA-ATTATTTTATATATATATATATAT
1 ATAAT-TATATTATTTTATATACATATATATAT
* * *
26436041 GTAATTATTATTATTTTATCTACATATGTATAT
1 ATAATTA-TATTATTTTATATACATATATATAT
*
26436074 ATATTTATATT-TTTTAT
1 ATAATTATATTATTTTAT
26436091 GAATATTTTT
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
31 8 0.19
32 8 0.19
33 26 0.62
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (32 bp):
ATAATTATATTATTTTATATACATATATATAT
Found at i:26436067 original size:27 final size:27
Alignment explanation
Indices: 26436012--26436083 Score: 76
Period size: 27 Copynumber: 2.6 Consensus size: 27
26436002 TTAATTGATA
*
26436012 ATGTAATTATTTTATATATATATATAT
1 ATGTAATTATTTTATATATATATACAT
* *
26436039 ATGTAATTATTATTAT-TTTATCTACAT
1 ATGTAATTATT-TTATATATATATACAT
26436066 ATGT-ATATATATTTATAT
1 ATGTAAT-TAT-TTTATAT
26436084 TTTTTATGAA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 2 0.05
27 30 0.79
28 6 0.16
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.56
Consensus pattern (27 bp):
ATGTAATTATTTTATATATATATACAT
Found at i:26436091 original size:23 final size:23
Alignment explanation
Indices: 26436065--26436109 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
26436055 TTTATCTACA
*
26436065 TATGTATATATATT-TATATTTTT
1 TATGAATAT-TATTCTATATTTTT
*
26436088 TATGAATATTTTTCTATATTTT
1 TATGAATATTATTCTATATTTT
26436110 ATTTTTCTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.64
Consensus pattern (23 bp):
TATGAATATTATTCTATATTTTT
Found at i:26436127 original size:15 final size:14
Alignment explanation
Indices: 26436080--26436130 Score: 50
Period size: 15 Copynumber: 3.6 Consensus size: 14
26436070 ATATATATTT
*
26436080 ATATTTTT-TATGA
1 ATATTTTTCTATAA
*
26436093 ATATTTTTCTATATT
1 ATATTTTTCTATA-A
*
26436108 TTATTTTTCTAATAA
1 ATATTTTTCT-ATAA
26436123 ATATTTTT
1 ATATTTTT
26436131 GTATTTATAC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
13 8 0.27
14 3 0.10
15 16 0.53
16 3 0.10
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (14 bp):
ATATTTTTCTATAA
Found at i:26436129 original size:29 final size:29
Alignment explanation
Indices: 26436073--26436130 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 29
26436063 CATATGTATA
*
26436073 TATATTTATATTTTTTATGAATATTTTTC
1 TATATTTATATTTTTTATAAATATTTTTC
26436102 TATATTT-TATTTTTCTAATAAATATTTTT
1 TATATTTATATTTTT-T-ATAAATATTTTT
26436131 GTATTTATAC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 7 0.27
29 8 0.31
30 11 0.42
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.66
Consensus pattern (29 bp):
TATATTTATATTTTTTATAAATATTTTTC
Found at i:26439384 original size:35 final size:35
Alignment explanation
Indices: 26439338--26439454 Score: 101
Period size: 35 Copynumber: 3.3 Consensus size: 35
26439328 ACTCTCTGTT
** *
26439338 TTGGTGTGTTTCGGTTAGACTAGCTCTTACTAGCA
1 TTGGTGTGTTTCGGAGAGACTAGCTCTTACGAGCA
* * *
26439373 TTGGTGTGTTTCGGAGGGATTAGCTCTTACGAGCG
1 TTGGTGTGTTTCGGAGAGACTAGCTCTTACGAGCA
* * * * * *
26439408 TTGGTGTCTTTCAGATG-GATTGGCTCTTATGAACA
1 TTGGTGTGTTTCGGA-GAGACTAGCTCTTACGAGCA
26439443 TCTGGTGTGTTT
1 T-TGGTGTGTTT
26439455 TGGTTAGATT
Statistics
Matches: 67, Mismatches: 13, Indels: 3
0.81 0.16 0.04
Matches are distributed among these distances:
35 57 0.85
36 10 0.15
ACGTcount: A:0.15, C:0.15, G:0.30, T:0.40
Consensus pattern (35 bp):
TTGGTGTGTTTCGGAGAGACTAGCTCTTACGAGCA
Found at i:26441676 original size:17 final size:17
Alignment explanation
Indices: 26441656--26441739 Score: 78
Period size: 17 Copynumber: 4.9 Consensus size: 17
26441646 TATTCATATG
*
26441656 AAATAACAGTACATACC
1 AAATAACAGTTCATACC
* *
26441673 AAATGACAGTTCATTCC
1 AAATAACAGTTCATACC
* * **
26441690 AATTAGCAGTTCATAAT
1 AAATAACAGTTCATACC
* *
26441707 ACATAACAGTTCATACA
1 AAATAACAGTTCATACC
*
26441724 AAATAATAGTTCATAC
1 AAATAACAGTTCATAC
26441740 TACATCATAA
Statistics
Matches: 51, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
17 51 1.00
ACGTcount: A:0.45, C:0.19, G:0.08, T:0.27
Consensus pattern (17 bp):
AAATAACAGTTCATACC
Found at i:26444633 original size:18 final size:18
Alignment explanation
Indices: 26444610--26444670 Score: 77
Period size: 18 Copynumber: 3.4 Consensus size: 18
26444600 AATTTGGCAA
* *
26444610 ATTAATATAGTTCGCCAT
1 ATTAATACAGATCGCCAT
* *
26444628 ATTAATACAGATCACCAA
1 ATTAATACAGATCGCCAT
26444646 ATTAATACAGATCGCCAT
1 ATTAATACAGATCGCCAT
*
26444664 AATAATA
1 ATTAATA
26444671 TAATTCTCCA
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.44, C:0.18, G:0.08, T:0.30
Consensus pattern (18 bp):
ATTAATACAGATCGCCAT
Found at i:26444887 original size:15 final size:16
Alignment explanation
Indices: 26444855--26444887 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
26444845 CATTATCAAT
26444855 AAAATTCATATGTTATA
1 AAAATTCATA-GTTATA
26444872 AAAATTCATA-TTATA
1 AAAATTCATAGTTATA
26444887 A
1 A
26444888 TATTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
17 10 0.62
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (16 bp):
AAAATTCATAGTTATA
Found at i:26446460 original size:23 final size:22
Alignment explanation
Indices: 26446409--26446460 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 22
26446399 TAAACTGAAG
*
26446409 TTATTAATTCTAATTATTCTAA
1 TTATTTATTCTAATTATTCTAA
26446431 -TATTTTATT-TAATTAATTCCTAA
1 TTA-TTTATTCTAATT-ATT-CTAA
26446454 TTATTTA
1 TTATTTA
26446461 ATTATATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 7 0.28
22 8 0.32
23 8 0.32
24 2 0.08
ACGTcount: A:0.35, C:0.08, G:0.00, T:0.58
Consensus pattern (22 bp):
TTATTTATTCTAATTATTCTAA
Found at i:26446476 original size:32 final size:31
Alignment explanation
Indices: 26446411--26446477 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 31
26446401 AACTGAAGTT
* * *
26446411 ATTAATTCTAATTATTCTAATATTTTATTTA
1 ATTAATTCTAATTATTCTAATATATAATCTA
26446442 ATTAATTCCTAATTATT-TAATTATATAATCTA
1 ATTAATT-CTAATTATTCTAA-TATATAATCTA
26446474 ATTA
1 ATTA
26446478 CGGTTTTCAG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
31 10 0.32
32 21 0.68
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.54
Consensus pattern (31 bp):
ATTAATTCTAATTATTCTAATATATAATCTA
Found at i:26446989 original size:88 final size:87
Alignment explanation
Indices: 26446837--26447003 Score: 257
Period size: 88 Copynumber: 1.9 Consensus size: 87
26446827 CTTATCCGCA
* *
26446837 CACTTTCATATCAACATGTAATGGAAATATGTATATAAAGTAAGCATTGGACCCTATACGAAATT
1 CACTTTCATATCAACATGGAATGGAAATATGTATATAAAGTAAGCATTGGACCCTATACAAAATT
*
26446902 AAGATATGTAAACAATTCTCACG
66 -AGATAGGTAAACAATTCTCACG
*
26446925 CACTTTCATA-CAAACATGGAATGGAAATATGTATATAAA-TGAAGCATTGGATCCTATACAAAA
1 CACTTTCATATC-AACATGGAATGGAAATATGTATATAAAGT-AAGCATTGGACCCTATACAAAA
26446988 TTAGATAGGTAAACAA
64 TTAGATAGGTAAACAA
26447004 GTCTTGTAAA
Statistics
Matches: 73, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
87 15 0.21
88 58 0.79
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.28
Consensus pattern (87 bp):
CACTTTCATATCAACATGGAATGGAAATATGTATATAAAGTAAGCATTGGACCCTATACAAAATT
AGATAGGTAAACAATTCTCACG
Found at i:26450706 original size:90 final size:90
Alignment explanation
Indices: 26450543--26450756 Score: 257
Period size: 90 Copynumber: 2.4 Consensus size: 90
26450533 AACAATTAGG
* * ** * * * * * *
26450543 ATATACATACAACAGGTAGTATGTACTAGTATCGGCTTTCATGCTATATAAATACAGCAAGTATT
1 ATATACATACAACAAGTACTATGTACCGGTGTTGGCTTTCATGCCATACAAATACAACAAGTACT
* *
26450608 ATGGACCGGTGTTGGCTATCATGCT
66 ATGGACCGGTGTTGACTATCATGCC
* * * *
26450633 ATATACATACAGCAAGTACTATTTACCGGTGTTGGCTTTCATGCCATACAAATACAATAGGTACT
1 ATATACATACAACAAGTACTATGTACCGGTGTTGGCTTTCATGCCATACAAATACAACAAGTACT
*
26450698 ATGTACCGGTGTTGACTATCATGCC
66 ATGGACCGGTGTTGACTATCATGCC
* *
26450723 ATATACATACAATAGGTACTATGTACCGGTGTTG
1 ATATACATACAACAAGTACTATGTACCGGTGTTG
26450757 ATTTTCTAAC
Statistics
Matches: 103, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
90 103 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (90 bp):
ATATACATACAACAAGTACTATGTACCGGTGTTGGCTTTCATGCCATACAAATACAACAAGTACT
ATGGACCGGTGTTGACTATCATGCC
Found at i:26450757 original size:45 final size:45
Alignment explanation
Indices: 26450543--26450756 Score: 230
Period size: 45 Copynumber: 4.8 Consensus size: 45
26450533 AACAATTAGG
* ** * * * *
26450543 ATATACATACAACAGGTAGTATGTACTAGTATCGGCTTTCATGCT
1 ATATACATACAACAGGTACTATGTACCGGTGTTGGCTATCATGCC
* * * * * *
26450588 ATATAAATACAGCAAGTATTATGGACCGGTGTTGGCTATCATGCT
1 ATATACATACAACAGGTACTATGTACCGGTGTTGGCTATCATGCC
* * * *
26450633 ATATACATACAGCAAGTACTATTTACCGGTGTTGGCTTTCATGCC
1 ATATACATACAACAGGTACTATGTACCGGTGTTGGCTATCATGCC
* * * *
26450678 ATACAAATACAATAGGTACTATGTACCGGTGTTGACTATCATGCC
1 ATATACATACAACAGGTACTATGTACCGGTGTTGGCTATCATGCC
*
26450723 ATATACATACAATAGGTACTATGTACCGGTGTTG
1 ATATACATACAACAGGTACTATGTACCGGTGTTG
26450757 ATTTTCTAAC
Statistics
Matches: 143, Mismatches: 26, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 143 1.00
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (45 bp):
ATATACATACAACAGGTACTATGTACCGGTGTTGGCTATCATGCC
Found at i:26454447 original size:13 final size:13
Alignment explanation
Indices: 26454429--26454453 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26454419 ATTTACAAGA
26454429 TTACATAATCAAC
1 TTACATAATCAAC
26454442 TTACATAATCAA
1 TTACATAATCAA
26454454 ATCTAATCCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.00, T:0.32
Consensus pattern (13 bp):
TTACATAATCAAC
Found at i:26455340 original size:12 final size:11
Alignment explanation
Indices: 26455305--26455340 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
26455295 AGAGCTTATG
*
26455305 TAAGCTTGATT
1 TAAGCTCGATT
26455316 TAAGCTCGATT
1 TAAGCTCGATT
26455327 TAAGCTCAGATT
1 TAAGCTC-GATT
26455339 TA
1 TA
26455341 GTTGTAAATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 17 0.74
12 6 0.26
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.39
Consensus pattern (11 bp):
TAAGCTCGATT
Found at i:26480305 original size:14 final size:15
Alignment explanation
Indices: 26480278--26480322 Score: 58
Period size: 14 Copynumber: 3.1 Consensus size: 15
26480268 GAATCTCAGG
*
26480278 TATATTTTACTATAAT
1 TATA-TTTATTATAAT
26480294 T-TATTTATTAT-AT
1 TATATTTATTATAAT
26480307 TATATTTATTATAAT
1 TATATTTATTATAAT
26480322 T
1 T
26480323 GGAGACTAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 3 0.12
14 17 0.65
15 5 0.19
16 1 0.04
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (15 bp):
TATATTTATTATAAT
Found at i:26483074 original size:22 final size:22
Alignment explanation
Indices: 26483046--26483089 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
26483036 TAGAATATGA
26483046 TATATTATGTGATGTTCTCATG
1 TATATTATGTGATGTTCTCATG
26483068 TATATTATGTGATGTTCTCATG
1 TATATTATGTGATGTTCTCATG
26483090 AGGGGAGTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.23, C:0.09, G:0.18, T:0.50
Consensus pattern (22 bp):
TATATTATGTGATGTTCTCATG
Found at i:26483315 original size:19 final size:19
Alignment explanation
Indices: 26483291--26483330 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
26483281 AAATCTCTAC
26483291 TTCATTTATACTTCTTATG
1 TTCATTTATACTTCTTATG
26483310 TTCATTTATACTTCTTATG
1 TTCATTTATACTTCTTATG
26483329 TT
1 TT
26483331 TATAAATAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.15, G:0.05, T:0.60
Consensus pattern (19 bp):
TTCATTTATACTTCTTATG
Found at i:26484207 original size:27 final size:27
Alignment explanation
Indices: 26484169--26484256 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
26484159 AAAAAACCTG
* *
26484169 TGGCGGCACCAAAAGTGCCAAAGTGAT
1 TGGCGGCACCAAAGGTGCCAAAGAGAT
26484196 TGGCGGCACCAAAGGTGCCAAAGAGAT
1 TGGCGGCACCAAAGGTGCCAAAGAGAT
*
26484223 TGGCCTG-ACCAAAGGTGCCAAAGAGAT
1 TGG-CGGCACCAAAGGTGCCAAAGAGAT
26484250 TGGCGGC
1 TGGCGGC
26484257 GCAAGACTAA
Statistics
Matches: 55, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
26 2 0.04
27 51 0.93
28 2 0.04
ACGTcount: A:0.31, C:0.23, G:0.33, T:0.14
Consensus pattern (27 bp):
TGGCGGCACCAAAGGTGCCAAAGAGAT
Found at i:26484814 original size:18 final size:17
Alignment explanation
Indices: 26484785--26484819 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26484775 GTAATGTTTC
*
26484785 AAAAAATGTTTTTAGGA
1 AAAAAATGTTTTAAGGA
26484802 AAAAAATGTTTTTAAGGA
1 AAAAAATG-TTTTAAGGA
26484820 GAAGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (17 bp):
AAAAAATGTTTTAAGGA
Found at i:26485940 original size:22 final size:23
Alignment explanation
Indices: 26485915--26485966 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
26485905 CTCTCTAATC
26485915 CTCTCAATTTT-CTTCCAAAATT
1 CTCTCAATTTTCCTTCCAAAATT
*
26485937 CTCTCATTTTTCCTTCCAAAATT
1 CTCTCAATTTTCCTTCCAAAATT
26485960 CTCTCAA
1 CTCTCAA
26485967 ACCCATATTT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
22 10 0.37
23 17 0.63
ACGTcount: A:0.25, C:0.31, G:0.00, T:0.44
Consensus pattern (23 bp):
CTCTCAATTTTCCTTCCAAAATT
Found at i:26486001 original size:51 final size:51
Alignment explanation
Indices: 26485945--26486050 Score: 176
Period size: 51 Copynumber: 2.1 Consensus size: 51
26485935 TTCTCTCATT
*
26485945 TTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTCCTCTCAA
1 TTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTCCCCTCAA
* * *
26485996 TTTCCTTCCAAAATTCTCTTAAATCCATATTTAATTTCAATTTCCCCTTAA
1 TTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTCCCCTCAA
26486047 TTTC
1 TTTC
26486051 ATTTTTTAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.28, C:0.27, G:0.00, T:0.44
Consensus pattern (51 bp):
TTTCCTTCCAAAATTCTCTCAAACCCATATTTAATTTCAATTTCCCCTCAA
Found at i:26486078 original size:10 final size:10
Alignment explanation
Indices: 26486051--26486116 Score: 69
Period size: 10 Copynumber: 6.5 Consensus size: 10
26486041 CCTTAATTTC
*
26486051 ATTTTTTAAA
1 ATTTTTTTAA
**
26486061 ATAATTTTAA
1 ATTTTTTTAA
26486071 ATTTTTTTAA
1 ATTTTTTTAA
26486081 ATTTTTTTAAA
1 ATTTTTTT-AA
**
26486092 ATAATTTTAA
1 ATTTTTTTAA
*
26486102 ATTTTTTTAT
1 ATTTTTTTAA
26486112 ATTTT
1 ATTTT
26486117 CATCAATGGC
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
10 37 0.82
11 8 0.18
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (10 bp):
ATTTTTTTAA
Found at i:26486090 original size:31 final size:31
Alignment explanation
Indices: 26486052--26486116 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
26486042 CTTAATTTCA
26486052 TTTTTTAAAATAATTTTAAATTTTTTTAAAT
1 TTTTTTAAAATAATTTTAAATTTTTTTAAAT
*
26486083 TTTTTTAAAATAATTTTAAATTTTTTTATAT
1 TTTTTTAAAATAATTTTAAATTTTTTTAAAT
26486114 TTT
1 TTT
26486117 CATCAATGGC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (31 bp):
TTTTTTAAAATAATTTTAAATTTTTTTAAAT
Found at i:26486093 original size:21 final size:21
Alignment explanation
Indices: 26486051--26486110 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
26486041 CCTTAATTTC
* **
26486051 ATTTTTTAAAATAATTTT-AA
1 ATTTTTTTAAATTTTTTTAAA
26486071 ATTTTTTTAAATTTTTTTAAA
1 ATTTTTTTAAATTTTTTTAAA
**
26486092 ATAATTTTAAATTTTTTTA
1 ATTTTTTTAAATTTTTTTA
26486111 TATTTTCATC
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 15 0.44
21 19 0.56
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTTTTTTAAATTTTTTTAAA
Found at i:26487209 original size:7 final size:7
Alignment explanation
Indices: 26487197--26487221 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
26487187 AGTCGATTGA
26487197 TATTTAG
1 TATTTAG
26487204 TATTTAG
1 TATTTAG
26487211 TATTTAG
1 TATTTAG
26487218 TATT
1 TATT
26487222 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:26488331 original size:25 final size:25
Alignment explanation
Indices: 26488303--26488371 Score: 93
Period size: 25 Copynumber: 2.7 Consensus size: 25
26488293 TTTAAATTTA
*
26488303 TTATCTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
* * *
26488328 TTATTTAATATAATAAAATTGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
26488353 TCTATTTGATGTAATAAAA
1 T-TATTTGATGTAATAAAA
26488372 ACCCTAATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
25 22 0.59
26 15 0.41
ACGTcount: A:0.45, C:0.03, G:0.12, T:0.41
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:26488444 original size:40 final size:40
Alignment explanation
Indices: 26488388--26488473 Score: 145
Period size: 40 Copynumber: 2.1 Consensus size: 40
26488378 ATTTATTTAA
*
26488388 AAACTTGCAATAACATGAGCGCATGGATAGCGAAGTGCATC
1 AAAC-TGCAATAACATGAGCGCATGGATAACGAAGTGCATC
*
26488429 AAACTGCAATAACATGAGCGCATGGATAACGAAGTGTATC
1 AAACTGCAATAACATGAGCGCATGGATAACGAAGTGCATC
26488469 AAACT
1 AAACT
26488474 TCCCACAGTC
Statistics
Matches: 43, Mismatches: 2, Indels: 1
0.93 0.04 0.02
Matches are distributed among these distances:
40 39 0.91
41 4 0.09
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.20
Consensus pattern (40 bp):
AAACTGCAATAACATGAGCGCATGGATAACGAAGTGCATC
Found at i:26491328 original size:124 final size:124
Alignment explanation
Indices: 26491103--26491452 Score: 628
Period size: 124 Copynumber: 2.8 Consensus size: 124
26491093 CCCAAACTTG
* *
26491103 CTACTGTAGCAAAATCGCATCCACGAGGGCGCAATTTCACAATTTCTTTTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCAATTTCACAATTTCTTCTCAAATAGCATCCTGG
26491168 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
66 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
*
26491227 CTACTGTCGCAAAATCGCGTCCACGAGGGCGCAATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCAATTTCACAATTTCTTCTCAAATAGCATCCTGG
* * *
26491292 TAGAGGCGATTTTATACTATTTTCTTAGAAAAGTCAAAAAAAATTATTTCTTACATGAC
66 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
* *
26491351 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCATAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCAATTTCACAATTTCTTCTCAAATAGCATCCTGG
26491416 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAA
66 TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAA
26491453 CTTGAAATAA
Statistics
Matches: 214, Mismatches: 12, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
124 214 1.00
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (124 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCAATTTCACAATTTCTTCTCAAATAGCATCCTGG
TAGAGGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCTTACATGAC
Found at i:26491717 original size:29 final size:29
Alignment explanation
Indices: 26491651--26491717 Score: 71
Period size: 29 Copynumber: 2.3 Consensus size: 29
26491641 CGATTTCCCG
* *
26491651 AAAAATGGCCCATTCCGGTAAATAATCAA
1 AAAAACGGCCAATTCCGGTAAATAATCAA
* * ** *
26491680 AAAATCGGCCAATTTCGGTAAATTTTGAA
1 AAAAACGGCCAATTCCGGTAAATAATCAA
26491709 AAAAACGGC
1 AAAAACGGC
26491718 TTTTTTTGGT
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.43, C:0.18, G:0.16, T:0.22
Consensus pattern (29 bp):
AAAAACGGCCAATTCCGGTAAATAATCAA
Found at i:26492423 original size:25 final size:26
Alignment explanation
Indices: 26492372--26492423 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
26492362 TTTTTTTGGT
*
26492372 ATATTTTGGTAAATAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAATGATA
26492398 ATATTTTGGTAAATAAAAAAA-GATA
1 ATATTTTGGTAAATAAAAAAATGATA
26492423 A
1 A
26492424 CAATTTAGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.56, C:0.00, G:0.10, T:0.35
Consensus pattern (26 bp):
ATATTTTGGTAAATAAAAAAATGATA
Found at i:26492429 original size:26 final size:26
Alignment explanation
Indices: 26492374--26492429 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
26492364 TTTTTGGTAT
* *
26492374 ATTTTGGTAAATAAAAAAATTATAAT
1 ATTTTGGTAAATAAAAAAATGATAAA
26492400 ATTTTGGTAAATAAAAAAA-GATAACA
1 ATTTTGGTAAATAAAAAAATGATAA-A
26492426 ATTT
1 ATTT
26492430 AGTTATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
25 4 0.15
26 23 0.85
ACGTcount: A:0.54, C:0.02, G:0.09, T:0.36
Consensus pattern (26 bp):
ATTTTGGTAAATAAAAAAATGATAAA
Found at i:26492720 original size:7 final size:7
Alignment explanation
Indices: 26492708--26492736 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
26492698 AACCCAATTC
26492708 ATGGAAA
1 ATGGAAA
26492715 ATGGAAA
1 ATGGAAA
26492722 ATGGAAA
1 ATGGAAA
26492729 ATGGAAA
1 ATGGAAA
26492736 A
1 A
26492737 CACCCTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.28, T:0.14
Consensus pattern (7 bp):
ATGGAAA
Found at i:26502158 original size:40 final size:40
Alignment explanation
Indices: 26502109--26502197 Score: 115
Period size: 40 Copynumber: 2.2 Consensus size: 40
26502099 ACATTAGTTG
* * * *
26502109 AATCGAAATATTTCGGTTAATTCGGTCCGTTAACTGAATT
1 AATCGAAATATTTCAGTTAATTCAGTCCGATAACCGAATT
* **
26502149 AATCGAAATATTTCAGTTAATTTAGTTTGATAACCGAATT
1 AATCGAAATATTTCAGTTAATTCAGTCCGATAACCGAATT
26502189 AATCGAAAT
1 AATCGAAAT
26502198 TTATATATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (40 bp):
AATCGAAATATTTCAGTTAATTCAGTCCGATAACCGAATT
Found at i:26502316 original size:20 final size:19
Alignment explanation
Indices: 26502279--26502319 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
26502269 TCTAATAGTT
*
26502279 TAAAAATACATTACTAATA
1 TAAAAATACATTAATAATA
*
26502298 TAAAAATATATTATATAATA
1 TAAAAATACATTA-ATAATA
26502318 TA
1 TA
26502320 TATTATATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 12 0.63
20 7 0.37
ACGTcount: A:0.59, C:0.05, G:0.00, T:0.37
Consensus pattern (19 bp):
TAAAAATACATTAATAATA
Found at i:26506170 original size:33 final size:33
Alignment explanation
Indices: 26506132--26506198 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
26506122 AGAACTTTTA
26506132 AATCCTAGATTCTGTTTGATTGATACTTTTGCT
1 AATCCTAGATTCTGTTTGATTGATACTTTTGCT
26506165 AATCCTAGATTCTGTTTGATTGATACTTTTGCT
1 AATCCTAGATTCTGTTTGATTGATACTTTTGCT
26506198 A
1 A
26506199 TAAGTTTTGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.48
Consensus pattern (33 bp):
AATCCTAGATTCTGTTTGATTGATACTTTTGCT
Found at i:26513328 original size:23 final size:23
Alignment explanation
Indices: 26513297--26513343 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
26513287 TCCCAAAGAC
*
26513297 ATGCATAAA-CTTTGGATTTTAAA
1 ATGCATAAATCATT-GATTTTAAA
*
26513320 ATGCTTAAATCATTGATTTTAAA
1 ATGCATAAATCATTGATTTTAAA
26513343 A
1 A
26513344 CTTAAATTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.40
Consensus pattern (23 bp):
ATGCATAAATCATTGATTTTAAA
Found at i:26515858 original size:29 final size:27
Alignment explanation
Indices: 26515840--26515909 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
26515830 ATATTAAGTC
26515840 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
26515867 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
26515895 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
26515910 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:26515903 original size:28 final size:28
Alignment explanation
Indices: 26515840--26515937 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
26515830 ATATTAAGTC
*
26515840 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
26515867 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
26515895 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
26515924 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26515938 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:26523409 original size:19 final size:19
Alignment explanation
Indices: 26523375--26523411 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
26523365 TAATAATCAA
*
26523375 TATTTTTTTTGATATTTTC
1 TATTTTTTTTCATATTTTC
*
26523394 TATTTTTTTTCTTATTTT
1 TATTTTTTTTCATATTTT
26523412 TTTGTATCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (19 bp):
TATTTTTTTTCATATTTTC
Found at i:26526111 original size:22 final size:22
Alignment explanation
Indices: 26526022--26526111 Score: 64
Period size: 22 Copynumber: 4.2 Consensus size: 22
26526012 CATGAAGAAA
*
26526022 AATAAAAGAATATAACTA-GAT
1 AATAAAAGAATATAACTATAAT
** *
26526043 AATAATAAGGTTAGTAA--ACAA-
1 AATAA-AAGAATA-TAACTATAAT
* *
26526064 AATAAAAGAATATAAAT-TGAAA
1 AATAAAAGAATATAACTAT-AAT
26526086 AATAAAAGAATATAACTATAAT
1 AATAAAAGAATATAACTATAAT
26526108 AATA
1 AATA
26526112 TCCATGTCGC
Statistics
Matches: 53, Mismatches: 8, Indels: 15
0.70 0.11 0.20
Matches are distributed among these distances:
19 3 0.06
20 5 0.09
21 13 0.25
22 28 0.53
23 4 0.08
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.24
Consensus pattern (22 bp):
AATAAAAGAATATAACTATAAT
Found at i:26539439 original size:9 final size:9
Alignment explanation
Indices: 26539425--26539453 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
26539415 TAAACAATTC
26539425 AATAATATA
1 AATAATATA
26539434 AATAATATA
1 AATAATATA
26539443 AATAATATA
1 AATAATATA
26539452 AA
1 AA
26539454 ATGTGAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AATAATATA
Found at i:26540027 original size:9 final size:9
Alignment explanation
Indices: 26540010--26540040 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
26540000 TCGAGTTGAT
26540010 TCGAATAAC
1 TCGAATAAC
*
26540019 TCGATTAAC
1 TCGAATAAC
26540028 TCGAATAAC
1 TCGAATAAC
26540037 TCGA
1 TCGA
26540041 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:26540556 original size:15 final size:15
Alignment explanation
Indices: 26540536--26540593 Score: 84
Period size: 15 Copynumber: 3.9 Consensus size: 15
26540526 TTCATTTAGT
26540536 TTTTTATTTTATTAA
1 TTTTTATTTTATTAA
26540551 TTTTTATTGTTATT-A
1 TTTTTATT-TTATTAA
26540566 TTTTTATTTT-TTAGA
1 TTTTTATTTTATTA-A
26540581 TTTTTATTTTATT
1 TTTTTATTTTATT
26540594 TTATTATGCA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
13 2 0.05
14 2 0.05
15 28 0.72
16 7 0.18
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.76
Consensus pattern (15 bp):
TTTTTATTTTATTAA
Found at i:26540563 original size:21 final size:22
Alignment explanation
Indices: 26540539--26540593 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
26540529 ATTTAGTTTT
26540539 TTATTTTATTAATTTTT-ATTG
1 TTATTTTATTAATTTTTAATTG
* * *
26540560 TTATTATTTTTATTTTTTAGATTT
1 TTATT-TTATTAATTTTTA-ATTG
26540584 TTATTTTATT
1 TTATTTTATT
26540594 TTATTATGCA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
21 5 0.19
22 10 0.37
23 4 0.15
24 8 0.30
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (22 bp):
TTATTTTATTAATTTTTAATTG
Found at i:26544364 original size:20 final size:20
Alignment explanation
Indices: 26544341--26544389 Score: 62
Period size: 20 Copynumber: 2.5 Consensus size: 20
26544331 CGAGCTCAAA
* ** *
26544341 TGAGCTGAATTAAGCTTATG
1 TGAGCTGAAATAAAATTAAG
26544361 TGAGCTGAAATAAAATTAAG
1 TGAGCTGAAATAAAATTAAG
26544381 TGAGCTGAA
1 TGAGCTGAA
26544390 CCAAGCTAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.39, C:0.08, G:0.24, T:0.29
Consensus pattern (20 bp):
TGAGCTGAAATAAAATTAAG
Found at i:26546522 original size:21 final size:21
Alignment explanation
Indices: 26546483--26546536 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
26546473 TTCTTTTATC
* *
26546483 TCTTTTTCTTTTATCTCTTTT
1 TCTTTTTCTCTCATCTCTTTT
*
26546504 TCTTTTTCTCTCATTTCTTTT
1 TCTTTTTCTCTCATCTCTTTT
*
26546525 T-TTCTTCTCTCA
1 TCTTTTTCTCTCA
26546537 AATTCATTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
20 10 0.34
21 19 0.66
ACGTcount: A:0.06, C:0.24, G:0.00, T:0.70
Consensus pattern (21 bp):
TCTTTTTCTCTCATCTCTTTT
Found at i:26546526 original size:16 final size:15
Alignment explanation
Indices: 26546470--26546524 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
26546460 TCTCAATTTA
26546470 TTTTTCTTTTATCTC
1 TTTTTCTTTTATCTC
26546485 TTTTTCTTTTATCTC
1 TTTTTCTTTTATCTC
26546500 TTTTTCTTTT-TCTC
1 TTTTTCTTTTATCTC
*
26546514 TCATTTCTTTT
1 T-TTTTCTTTT
26546525 TTTCTTCTCT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
14 5 0.13
15 33 0.87
ACGTcount: A:0.05, C:0.20, G:0.00, T:0.75
Consensus pattern (15 bp):
TTTTTCTTTTATCTC
Found at i:26547865 original size:26 final size:26
Alignment explanation
Indices: 26547830--26547879 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26547820 CCCACACACC
* *
26547830 AATATTGCAGCATAGCTGCCAGTAAT
1 AATATCGCAGCAGAGCTGCCAGTAAT
26547856 AATATCGCAGCAGAGCTGCCAGTA
1 AATATCGCAGCAGAGCTGCCAGTA
26547880 CAGTATATGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
AATATCGCAGCAGAGCTGCCAGTAAT
Found at i:26548132 original size:26 final size:26
Alignment explanation
Indices: 26548103--26548260 Score: 219
Period size: 26 Copynumber: 6.1 Consensus size: 26
26548093 ACAGTCATTC
* *
26548103 TACCCTTCGGGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
* * *
26548129 TACCCATCAAGGGTATTTTGGTAATT
1 TACCCATCGAGGGTATTTCGATAATT
26548155 TACCCATCGAGGGTATTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
*
26548181 TACCCATCGGGGGTATTTC-AGTAATT
1 TACCCATCGAGGGTATTTCGA-TAATT
*
26548207 TACCCATCGAGGGTATTTCGGTAATT
1 TACCCATCGAGGGTATTTCGATAATT
* *
26548233 TACCCATAGAGGGTGTTTCGATAATT
1 TACCCATCGAGGGTATTTCGATAATT
26548259 TA
1 TA
26548261 GGCCTATTAC
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
25 1 0.01
26 115 0.99
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (26 bp):
TACCCATCGAGGGTATTTCGATAATT
Found at i:26548232 original size:78 final size:78
Alignment explanation
Indices: 26548103--26548260 Score: 255
Period size: 78 Copynumber: 2.0 Consensus size: 78
26548093 ACAGTCATTC
* * *
26548103 TACCCTTCGGGGGTATTTCGATAATTTACCCATCAAGGGTATTTTGGTAATTTACCCATCGAGGG
1 TACCCATCGGGGGTATTTCGATAATTTACCCATCAAGGGTATTTCGGTAATTTACCCATAGAGGG
26548168 TATTTCGATAATT
66 TATTTCGATAATT
*
26548181 TACCCATCGGGGGTATTTC-AGTAATTTACCCATCGAGGGTATTTCGGTAATTTACCCATAGAGG
1 TACCCATCGGGGGTATTTCGA-TAATTTACCCATCAAGGGTATTTCGGTAATTTACCCATAGAGG
*
26548245 GTGTTTCGATAATT
65 GTATTTCGATAATT
26548259 TA
1 TA
26548261 GGCCTATTAC
Statistics
Matches: 74, Mismatches: 5, Indels: 2
0.91 0.06 0.02
Matches are distributed among these distances:
77 1 0.01
78 73 0.99
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.36
Consensus pattern (78 bp):
TACCCATCGGGGGTATTTCGATAATTTACCCATCAAGGGTATTTCGGTAATTTACCCATAGAGGG
TATTTCGATAATT
Found at i:26553472 original size:6 final size:6
Alignment explanation
Indices: 26553461--26553498 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
26553451 ATCTTGTGGA
26553461 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG -AAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAAAAG AAA
26553499 GAGATGGTAA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.16
6 26 0.84
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:26562374 original size:30 final size:30
Alignment explanation
Indices: 26562313--26562371 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
26562303 GCTTTTTGAA
* *
26562313 AATATTTACAAAAAGAGGCATCTAAATTTT
1 AATATTTACAAAAAGAGGCAACCAAATTTT
26562343 AATATTTACAAAAAGA-GCAACCAAATTTT
1 AATATTTACAAAAAGAGGCAACCAAATTTT
26562372 TAAAAATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 11 0.41
30 16 0.59
ACGTcount: A:0.49, C:0.12, G:0.08, T:0.31
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCAACCAAATTTT
Found at i:26565222 original size:33 final size:31
Alignment explanation
Indices: 26565161--26565224 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
26565151 TCATTTTCAA
26565161 TGATCCTGATACCTCTTTTTTTGGCACACAC
1 TGATCCTGATACCTCTTTTTTTGGCACACAC
26565192 TGATCCTGATACCTCTTTTTTTGGCACACAC
1 TGATCCTGATACCTCTTTTTTTGGCACACAC
26565223 TG
1 TG
26565225 GACTGGACTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.19, C:0.28, G:0.14, T:0.39
Consensus pattern (31 bp):
TGATCCTGATACCTCTTTTTTTGGCACACAC
Found at i:26570946 original size:12 final size:13
Alignment explanation
Indices: 26570929--26570958 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
26570919 CTTATACATG
26570929 AATAAATAAA-GC
1 AATAAATAAATGC
26570941 AATAAATAAATGC
1 AATAAATAAATGC
26570954 AATAA
1 AATAA
26570959 TTATAGCCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.67, C:0.07, G:0.07, T:0.20
Consensus pattern (13 bp):
AATAAATAAATGC
Found at i:26577493 original size:153 final size:153
Alignment explanation
Indices: 26577211--26577520 Score: 539
Period size: 153 Copynumber: 2.0 Consensus size: 153
26577201 GGCCTATAAC
*
26577211 AACATAACACAATTTTAATAATTTTAACAAACGAAATGCAATCAACATAACACAAATTAAATTCA
1 AACATAACACAATTTTAATAATTTTAAAAAACGAAATGCAATCAACATAACACAAATTAAATTCA
* *
26577276 AGCTAAATTGATTAAATTAACCATTCCAACAACATAAATTTTGATAGATATGTTTAGCAGAACAA
66 AGATAAATTGATTAAATTAACCATTCCAACAACATAAATATTGATAGATATGTTTAGCAGAACAA
* *
26577341 TAACAAAAATTAAAGAGATAGGG
131 CAACAAAAAATAAAGAGATAGGG
* *
26577364 AACATAACACAATTTTAATGATTTTAAAAAACGAAATGCAATCAACATAACACGAATTAAATTCA
1 AACATAACACAATTTTAATAATTTTAAAAAACGAAATGCAATCAACATAACACAAATTAAATTCA
*
26577429 AGATAAATTGATTAAATTAACCATTCCAACAACATAAATATTGATAGATATGTTTAGCATAACAA
66 AGATAAATTGATTAAATTAACCATTCCAACAACATAAATATTGATAGATATGTTTAGCAGAACAA
*
26577494 CAGCAAAAAATAAAGAGATAGGG
131 CAACAAAAAATAAAGAGATAGGG
26577517 AACA
1 AACA
26577521 AGAATCAAAT
Statistics
Matches: 148, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
153 148 1.00
ACGTcount: A:0.51, C:0.14, G:0.10, T:0.26
Consensus pattern (153 bp):
AACATAACACAATTTTAATAATTTTAAAAAACGAAATGCAATCAACATAACACAAATTAAATTCA
AGATAAATTGATTAAATTAACCATTCCAACAACATAAATATTGATAGATATGTTTAGCAGAACAA
CAACAAAAAATAAAGAGATAGGG
Found at i:26578530 original size:23 final size:24
Alignment explanation
Indices: 26578463--26578561 Score: 101
Period size: 24 Copynumber: 4.2 Consensus size: 24
26578453 AGGCAACCTC
* *
26578463 GAATACGCCACAAAGGCACTTACA
1 GAATACGCCACAAAGGAACTTATA
*** * * *
26578487 GAATTTTCTACAATGGCACTTATA
1 GAATACGCCACAAAGGAACTTATA
26578511 -AATACGCCACAAAGGAACTTATA
1 GAATACGCCACAAAGGAACTTATA
* *
26578534 GAATATGCCACAAAGGAACTTACA
1 GAATACGCCACAAAGGAACTTATA
26578558 GAAT
1 GAAT
26578562 CACGTGTTTA
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
23 17 0.28
24 43 0.72
ACGTcount: A:0.42, C:0.21, G:0.15, T:0.21
Consensus pattern (24 bp):
GAATACGCCACAAAGGAACTTATA
Done.