Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 85 of 173
Found at i:26578555 original size:47 final size:47
Alignment explanation
Indices: 26578464--26578555 Score: 121
Period size: 47 Copynumber: 2.0 Consensus size: 47
26578454 GGCAACCTCG
* * * * * *
26578464 AATACGCCACAAAGGCACTTACAGAATTTTCTACAATGGCACTTATA
1 AATACGCCACAAAGGAACTTACAGAATATGCCACAAAGGAACTTATA
*
26578511 AATACGCCACAAAGGAACTTATAGAATATGCCACAAAGGAACTTA
1 AATACGCCACAAAGGAACTTACAGAATATGCCACAAAGGAACTTA
26578556 CAGAATCACG
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 38 1.00
ACGTcount: A:0.42, C:0.22, G:0.14, T:0.22
Consensus pattern (47 bp):
AATACGCCACAAAGGAACTTACAGAATATGCCACAAAGGAACTTATA
Found at i:26585848 original size:79 final size:81
Alignment explanation
Indices: 26585712--26585896 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
26585702 TTGAATGATG
*
26585712 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26585776 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26585791 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26585853 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
26585871 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26585897 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:26585910 original size:40 final size:40
Alignment explanation
Indices: 26585713--26585896 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
26585703 TGAATGATGT
* * * *
26585713 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26585753 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
26585793 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26585831 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26585872 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26585897 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26585918 original size:79 final size:79
Alignment explanation
Indices: 26585765--26585929 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
26585755 GGACTAAGAT
* **
26585765 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
26585830 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
26585844 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
26585907 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
26585923 CCGAAGG
1 CCGAAGG
26585930 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:26589096 original size:935 final size:934
Alignment explanation
Indices: 26587287--26590104 Score: 4605
Period size: 935 Copynumber: 3.0 Consensus size: 934
26587277 CGACGTTTAG
26587287 ATATGGGAATACATCTACTCAGGGCAATTATCATATTTTATTTTATTGTTTTCAAGTTGTTGCTC
1 ATATGGGAATACATCTACTCAGGGCAATTATCATATTTTATTTTATTGTTTTCAAGTTGTTGCTC
* * *
26587352 TAACAACTATCCTCACAATTTAT-CTCGTTCCTATCTAGTTATCGCATCGACACTAATAGAAAAA
66 TGACAACTATCCTCACAATTTATCCT-GTTTCTATCTAGTTATTGCATCGACACTAATAGAAAAA
* *
26587416 AGGCAACCATCCCTGTGGGATCGATATATCCTTATTCCTTATGATATCCTGATGATGCCTTGAAG
130 AGACAACCATCCCTGTAGGATCGATATATCCTTATTCCTTATGATATCCTGATGATGCCTTGAAG
* *
26587481 ATGTAATTATTTCCTTATTCCTTATAGGGAAGAGCCCGTACTTGGTTTTTTGGGCTATCTACCGG
195 ATGCAATTATTTCCTTATTCCTTATAGGGAAGAGCCCGTACTTGGTTTTTTGGGCTACCTACCGG
* *
26587546 ATCAATTACTTCTTGGGATGCACTAGTAACACAGTTTGTTTTGCAATTTAACCCACCAACAACGA
260 ATCAATTACTTCTTGGGATGCACTAGTAACACAGTTTGTTTTGCGATTTAACCCACCAACAATGA
* * * * * * *
26587611 ATG-TTCGTCTTGAAAATGATATTATTGCTTACCATCAGTTGGATTATGAAAATCTTCAAACCAT
325 ATGCTT-GTCTTCAAAATGATATTACTACTTACCATCAGCTGGATGATGAAAATCTTCACACCAC
* *
26587675 GTGGGAACATTATAAATCTTTACTTTGACTTTGTCCCATGCACGACATTCAACCAGAAATACAAA
389 ATGGGAACATTATAAATCTTTACTTTGACTTTGTCCCATGCACGACATTCAACCAGAAACACAAA
* * *
26587740 TTGAGATTTCTATAACGGGCTGAATTCATATACAAGGAAACTTGTCGACGCATCAGCCAATGGAC
454 TTGAGATTTTTATAATGGGCTGAATTCATATACAAGGAAACTTGTCGATGCATCAGCCAATGGAC
* *
26587805 CTCTGTT-AGATTGTACTTATGATGATGCTGTGAGAAGTCTTGAGAGAATTGCTCAGAATGATTA
519 CTCTGTTGA-ATTGTACTTATAATGATGCTGTGAGAATTCTTGAGAGAATTGCTCAGAATGATTA
* * * *
26587869 TCAATACCTTATCTCTAGAGCTGCACAAGAAAAAACTACTCCTGGAGTTATTGAATTGGATGCAA
583 TCAATACCTTATCTCCATAGCTGCACAAGCAAAAACTACTCCAGGAGTTATTGAATTGGATGCAA
*
26587934 TAACTGCACTAAGTGCTCAAGTTTCTTCTCACACAAACATGATTAAAAATATGCAATAGACTAGT
648 TAACCGCACTAAGTGCTCAAGTTTCTTCTCACACAAACATGATTAAAAATATGCAATAGACTAGT
*
26587999 GGCGTTGCACCTATACAAGTCGCTTAACAAGTTGATGTTCCTACTTTTTGTTGTGAGATTTGTAG
713 GGCGTTGCACCTAT-CAAGTCGCTCAACAAGTTGATGTTCCTACTTTTTGTTGTGAGATTTGTAG
* **
26588064 TGACAACCATAGCTATGAAGATTGACCACAATATGCAAAGAATGCCTATTATATTAGTACATCTA
777 TGACAACCATAGCTATGAAGATTGACCACAATATGCAAAGAATGCCTGTTATATTAGTACATCCG
* * *
26588129 CAACAATTCTTAAGGTAACTCTTACAACAACTTTGCACGCAACCAACTATTTGGGGGAACTCAGA
842 CAACAATTCTTATGGTAACTCTTACAACAACTTTGCACGCAACCAACCATTTTGGGGAACTCAGA
26588194 ATGCTAGACAAAATGCTGCGACATTCAT
907 ATGCTAGACAAAATGCTGCGACATTCAT
*
26588222 ATATGGGAATACATCTACTCAGGGCAATTATCATATTTTATTTTATTGTTCTCAAGTTGTTGCTC
1 ATATGGGAATACATCTACTCAGGGCAATTATCATATTTTATTTTATTGTTTTCAAGTTGTTGCTC
* ***
26588287 TGATAACTATCCTCACAATTTATCCTGTTTCTATCTAGTTATTGCATCGACACTTCGAGAAAAAA
66 TGACAACTATCCTCACAATTTATCCTGTTTCTATCTAGTTATTGCATCGACACTAATAGAAAAAA
* * *
26588352 AACAACCATCCCTGTAGGATCGATATATCATTAATCCTTATGATATCCTGATGATGCCTTGAAGA
131 GACAACCATCCCTGTAGGATCGATATATCCTTATTCCTTATGATATCCTGATGATGCCTTGAAGA
26588417 TGCAATTATTTCCTTATTCCTTATAGGGAAGAGCCCGTACTTGGTTTTTTGGGCTACCTACCGGA
196 TGCAATTATTTCCTTATTCCTTATAGGGAAGAGCCCGTACTTGGTTTTTTGGGCTACCTACCGGA
* * * *
26588482 TCAATTACTTCTTGGGATGCACTAGTACCACAGTTTGTTTTGTGATTTAACTCACCAACAATAAA
261 TCAATTACTTCTTGGGATGCACTAGTAACACAGTTTGTTTTGCGATTTAACCCACCAACAATGAA
*
26588547 TGCTTGTCTTCAAAATGATATTACTACTTACCGTCAGCTGGATGATGAAAATCTTCACACCACAT
326 TGCTTGTCTTCAAAATGATATTACTACTTACCATCAGCTGGATGATGAAAATCTTCACACCACAT
* * *
26588612 GGGAACATTATAAATCTTTACTTTGACTTTGTCCCCTGTACGACATTCAACCAAAAACACAAATT
391 GGGAACATTATAAATCTTTACTTTGACTTTGTCCCATGCACGACATTCAACCAGAAACACAAATT
*
26588677 GAGATTTTTATAATGGGCTGAATTCATATACAAGGAAACTTGTCGATGCATCAGCCAATGGACTT
456 GAGATTTTTATAATGGGCTGAATTCATATACAAGGAAACTTGTCGATGCATCAGCCAATGGACCT
*
26588742 CTGTTGAATTGTACTTATAATGATGCTGTGAGAATTCTCGAGAGAATTGCTCAGAATGATTATCA
521 CTGTTGAATTGTACTTATAATGATGCTGTGAGAATTCTTGAGAGAATTGCTCAGAATGATTATCA
* * *
26588807 ATACCTTATCTCCATAGTTGCACAAGCAAAAACTAGTCCGGGAGTTATTGAATTGGATGCAATAA
586 ATACCTTATCTCCATAGCTGCACAAGCAAAAACTACTCCAGGAGTTATTGAATTGGATGCAATAA
26588872 CCGCACTAAGTGCTCAAGTTTCTTCTCACACAAACATGATTAAAAA-ATGCAATAGACTAGTGGC
651 CCGCACTAAGTGCTCAAGTTTCTTCTCACACAAACATGATTAAAAATATGCAATAGACTAGTGGC
*
26588936 GTTGCACCTATGCAAGTCGCTCAACAAGTTGATGTTCCTACTTTTTGTTCTGAGATTTTGTAGTG
716 GTTGCACCTAT-CAAGTCGCTCAACAAGTTGATGTTCCTACTTTTTGTTGTGAGA-TTTGTAGTG
26589001 ACAACCATAGCTATGAAGATTGACCACAATATGCAAAGAATGCCTGTTATATTAGTACATCCGCA
779 ACAACCATAGCTATGAAGATTGACCACAATATGCAAAGAATGCCTGTTATATTAGTACATCCGCA
* *
26589066 ACAATTCTTATGGTAACTCTTACAACAACTTTGCACGCAACCAACCATTTTGGGGAAGTCAAAAT
844 ACAATTCTTATGGTAACTCTTACAACAACTTTGCACGCAACCAACCATTTTGGGGAACTCAGAAT
* * *
26589131 CCTAGACAAAATGCTGCTACATTCAG
909 GCTAGACAAAATGCTGCGACATTCAT
* *
26589157 ATATGGGAATACATCTACCCAGGGCAATTATCAAATTTTATTTTATTGTTTTCAAGTTGTTGCTC
1 ATATGGGAATACATCTACTCAGGGCAATTATCATATTTTATTTTATTGTTTTCAAGTTGTTGCTC
* *
26589222 TGACAACTATCCTCACAATTTATCTTGTTTCTATCTAGTTATTGCATCGACACTAATAGGAAAAA
66 TGACAACTATCCTCACAATTTATCCTGTTTCTATCTAGTTATTGCATCGACACTAATAGAAAAAA
* *
26589287 GACAACCATCCCTGTAGGATCGATATATCCTTATTCCTTATGATATCTTGATGATGCCTTAAAGA
131 GACAACCATCCCTGTAGGATCGATATATCCTTATTCCTTATGATATCCTGATGATGCCTTGAAGA
* * * * ***
26589352 TGCAATTATTTCCTTATTCCTTAGAGAGAAGAGCCAGTACTTCGTTTTTTGGGCTACCTACTAAA
196 TGCAATTATTTCCTTATTCCTTATAGGGAAGAGCCCGTACTTGGTTTTTTGGGCTACCTACCGGA
*
26589417 TCAATTACTTCTTGGGATGCACTAGTAACACAGTTTGTTTTGCGATTTAACCCGCCAACAATGAA
261 TCAATTACTTCTTGGGATGCACTAGTAACACAGTTTGTTTTGCGATTTAACCCACCAACAATGAA
* * *
26589482 TGCTCGTCTTCAAAATGATATTACTACTTACCATCAGCTGGATGATCATAATCTTCACACCACAT
326 TGCTTGTCTTCAAAATGATATTACTACTTACCATCAGCTGGATGATGAAAATCTTCACACCACAT
* * * * *
26589547 GAGAAAATTATAAATCTTTACTTCGACTTTGTCCCATGCACGACATTCAACTAGAAACCCAAATT
391 GGGAACATTATAAATCTTTACTTTGACTTTGTCCCATGCACGACATTCAACCAGAAACACAAATT
* * *
26589612 GAGATTTTTATAATGGGTTGAATTCATATACAAGGAAACTTGTCAATGCATCTGCCAATGGACCT
456 GAGATTTTTATAATGGGCTGAATTCATATACAAGGAAACTTGTCGATGCATCAGCCAATGGACCT
*
26589677 CTGTTGGATTGTACTTATAATGATGCTGTGAGAATTCTTGAGAGAATTGCTCAGAATGATTATCA
521 CTGTTGAATTGTACTTATAATGATGCTGTGAGAATTCTTGAGAGAATTGCTCAGAATGATTATCA
26589742 ATACCTTATCTCCATAGCTGCACAAGCAAAAACTACTCCAGGAGTTATTGAATTGGATGCAATAA
586 ATACCTTATCTCCATAGCTGCACAAGCAAAAACTACTCCAGGAGTTATTGAATTGGATGCAATAA
*
26589807 CCGCACTAAGTGCTCAAGTTTCTTCT-ATCCCAAACATGATTAAAAATATGCAATAGACTAGTGG
651 CCGCACTAAGTGCTCAAGTTTCTTCTCA-CACAAACATGATTAAAAATATGCAATAGACTAGTGG
26589871 CGTT--A--TA-CAAGTCGCTCAACAAGTTGATGTTCCTACTTTTTGTTGTGAGATTTGTAGTGA
715 CGTTGCACCTATCAAGTCGCTCAACAAGTTGATGTTCCTACTTTTTGTTGTGAGATTTGTAGTGA
* * * * *
26589931 CAACCATAGCTATGAAGATTGACCACAACATACAGAGAATGCCTGTTATATTATTACATCCGCGA
780 CAACCATAGCTATGAAGATTGACCACAATATGCAAAGAATGCCTGTTATATTAGTACATCCGCAA
* * * *
26589996 CAATTCTTATGGTAACTCCTACAACAACTCTGCACGCAACTAACCATTTTGGGGAACTTAGAATG
845 CAATTCTTATGGTAACTCTTACAACAACTTTGCACGCAACCAACCATTTTGGGGAACTCAGAATG
26590061 CTAGACAAAATGCTGCGACATTCAGT
910 CTAGACAAAATGCTGCGACATTCA-T
26590087 -TATGGGAATACATCTACT
1 ATATGGGAATACATCTACT
26590105 TAGAGCAAGT
Statistics
Matches: 1750, Mismatches: 126, Indels: 20
0.92 0.07 0.01
Matches are distributed among these distances:
929 168 0.10
930 42 0.02
932 2 0.00
934 72 0.04
935 1440 0.82
936 26 0.01
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.32
Consensus pattern (934 bp):
ATATGGGAATACATCTACTCAGGGCAATTATCATATTTTATTTTATTGTTTTCAAGTTGTTGCTC
TGACAACTATCCTCACAATTTATCCTGTTTCTATCTAGTTATTGCATCGACACTAATAGAAAAAA
GACAACCATCCCTGTAGGATCGATATATCCTTATTCCTTATGATATCCTGATGATGCCTTGAAGA
TGCAATTATTTCCTTATTCCTTATAGGGAAGAGCCCGTACTTGGTTTTTTGGGCTACCTACCGGA
TCAATTACTTCTTGGGATGCACTAGTAACACAGTTTGTTTTGCGATTTAACCCACCAACAATGAA
TGCTTGTCTTCAAAATGATATTACTACTTACCATCAGCTGGATGATGAAAATCTTCACACCACAT
GGGAACATTATAAATCTTTACTTTGACTTTGTCCCATGCACGACATTCAACCAGAAACACAAATT
GAGATTTTTATAATGGGCTGAATTCATATACAAGGAAACTTGTCGATGCATCAGCCAATGGACCT
CTGTTGAATTGTACTTATAATGATGCTGTGAGAATTCTTGAGAGAATTGCTCAGAATGATTATCA
ATACCTTATCTCCATAGCTGCACAAGCAAAAACTACTCCAGGAGTTATTGAATTGGATGCAATAA
CCGCACTAAGTGCTCAAGTTTCTTCTCACACAAACATGATTAAAAATATGCAATAGACTAGTGGC
GTTGCACCTATCAAGTCGCTCAACAAGTTGATGTTCCTACTTTTTGTTGTGAGATTTGTAGTGAC
AACCATAGCTATGAAGATTGACCACAATATGCAAAGAATGCCTGTTATATTAGTACATCCGCAAC
AATTCTTATGGTAACTCTTACAACAACTTTGCACGCAACCAACCATTTTGGGGAACTCAGAATGC
TAGACAAAATGCTGCGACATTCAT
Found at i:26596362 original size:18 final size:18
Alignment explanation
Indices: 26596339--26596375 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
26596329 AATACGAAGT
26596339 AGTTGCTGAAGAAGAAAA
1 AGTTGCTGAAGAAGAAAA
*
26596357 AGTTGCTGAAGATGAAAA
1 AGTTGCTGAAGAAGAAAA
26596375 A
1 A
26596376 TAAAAAGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.49, C:0.05, G:0.27, T:0.19
Consensus pattern (18 bp):
AGTTGCTGAAGAAGAAAA
Found at i:26600478 original size:101 final size:99
Alignment explanation
Indices: 26600305--26600495 Score: 265
Period size: 101 Copynumber: 1.9 Consensus size: 99
26600295 GTTCTTTTTG
* * ** * *
26600305 TGCCATAGTCCAACTATGGTCTTACACATGCATTGCCATGGCCCTGCCATGGTCTTACATTTGTA
1 TGCCATAGCCCAACTATGGTCTTACACATACATTGCCATGGCCCAACCATGGCCTTACATTCGTA
*
26600370 GTGCCATAACCTAGTTATGGTCTTATCATCAGAA
66 GTGCCATAACCCAGTTATGGTCTTATCATCAGAA
* * * *
26600404 TGCCATAGCCCAACTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGCCTTACGTTCG
1 TGCCATAGCCCAACTATGGTCTTACACAT--ACATTGCCATGGCCCAACCATGGCCTTACATTCG
26600469 TAGTGCCATAACCCAGTTATGGTCTTA
64 TAGTGCCATAACCCAGTTATGGTCTTA
26600496 CCTGTTAATT
Statistics
Matches: 79, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
99 27 0.34
101 52 0.66
ACGTcount: A:0.25, C:0.26, G:0.18, T:0.31
Consensus pattern (99 bp):
TGCCATAGCCCAACTATGGTCTTACACATACATTGCCATGGCCCAACCATGGCCTTACATTCGTA
GTGCCATAACCCAGTTATGGTCTTATCATCAGAA
Found at i:26603376 original size:50 final size:50
Alignment explanation
Indices: 26603252--26603542 Score: 323
Period size: 50 Copynumber: 5.8 Consensus size: 50
26603242 GAATATAACA
* * ** ** * * * *
26603252 TGCCAAAGCTATGTCCCAGACATAATCTTACATGGGATGTTTCTTATA-C
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * * * ** *
26603301 TGCCAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * * ** *
26603351 TGCCCATGTCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
*
26603401 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * *
26603451 TACCAACGCCATGTCCAAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
*
26603501 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26603543 TTACCCAAAA
Statistics
Matches: 207, Mismatches: 34, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
49 37 0.18
50 170 0.82
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
Found at i:26608824 original size:43 final size:43
Alignment explanation
Indices: 26608714--26608967 Score: 217
Period size: 43 Copynumber: 5.9 Consensus size: 43
26608704 AAAACGCCGC
* * * * * * *
26608714 TAAAGAACATGACCTTTAGCGGCGC-TTCACCAGAAACGCCAC
1 TAAAGAACATGACATTTAGCGACGCTTTTATCACAAATGCCAG
* * *
26608756 TAAAGAACAGGACCTTTAGAGACGCTTTTATCACAAATGCCAG
1 TAAAGAACATGACATTTAGCGACGCTTTTATCACAAATGCCAG
* * * *
26608799 TAAAGAACATGACATTTACCAACGCTTTTACCACAAACGCC-G
1 TAAAGAACATGACATTTAGCGACGCTTTTATCACAAATGCCAG
* * * * * *
26608841 CTAAAGAACATGACTTTTAGCGGCACTTTTATTAAAAATGTC-G
1 -TAAAGAACATGACATTTAGCGACGCTTTTATCACAAATGCCAG
** * * * *
26608884 CTAAAGAGTATGACCTTTAGTGGCGCTTTTATCACAAATGCCAC
1 -TAAAGAACATGACATTTAGCGACGCTTTTATCACAAATGCCAG
*
26608928 TAAAGAACATGATATTTAGCGACGCTTTTTATCACAAATG
1 TAAAGAACATGACATTTAGCGACGC-TTTTATCACAAATG
26608968 TCGCAAAAAG
Statistics
Matches: 168, Mismatches: 40, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
42 23 0.14
43 131 0.78
44 14 0.08
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.26
Consensus pattern (43 bp):
TAAAGAACATGACATTTAGCGACGCTTTTATCACAAATGCCAG
Found at i:26608860 original size:86 final size:86
Alignment explanation
Indices: 26608709--26608967 Score: 290
Period size: 86 Copynumber: 3.0 Consensus size: 86
26608699 GTGAAAAAAC
* * * *
26608709 GCCGCTAAAGAACATGACCTTTAGCGGCGC-TTCACCAGAAACGCCACTAAAGAACAGGACCTTT
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAGAACATGACTTTT
*
26608773 AGAGACGCTTTTATCACAAAT
66 AGCGACGCTTTTATCACAAAT
* * ** *
26608794 GCCAG-TAAAGAACATGACATTTACCAACGCTTTTACCACAAACGCCGCTAAAGAACATGACTTT
1 GCC-GCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAGAACATGACTTT
* * * *
26608858 TAGCGGCACTTTTATTAAAAAT
65 TAGCGACGCTTTTATCACAAAT
* ** * * *
26608880 GTCGCTAAAGAGTATGACCTTTAGTGGCGCTTTTATCACAAATGCCACTAAAGAACATGA-TATT
1 GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAGAACATGACT-TT
26608944 TAGCGACGCTTTTTATCACAAAT
65 TAGCGACGC-TTTTATCACAAAT
26608967 G
1 G
26608968 TCGCAAAAAG
Statistics
Matches: 140, Mismatches: 29, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
85 26 0.19
86 102 0.73
87 12 0.09
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (86 bp):
GCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTACCACAAACGCCACTAAAGAACATGACTTTT
AGCGACGCTTTTATCACAAAT
Found at i:26608934 original size:129 final size:129
Alignment explanation
Indices: 26608705--26608965 Score: 335
Period size: 129 Copynumber: 2.0 Consensus size: 129
26608695 TTATGTGAAA
* *
26608705 AAACGCCGCTAAAGAACATGACCTTTAGCGGCGCTTCACCAGAAACGCCACTAAAGAACAGGACC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTCACCAAAAACGCCACTAAAGAACAGGACC
*
26608770 TTTAGAGACGCTTTTATCACAAATGCCAGTAAAGAACATGACATTTACCAACGC-TTTTACCAC
66 TTTAGAGACGCTTTTATCACAAATGCCACTAAAGAACATGACATTTACCAACGCTTTTTACCAC
* * ** * * * ** *
26608833 AAACGCCGCTAAAGAACATGACTTTTAGCGGCACTTTTATTAAAAATGTCGCTAAAGAGTATGAC
1 AAACGCCGCTAAAGAACATGACCTTTAGCGGCAC-TTCACCAAAAACGCCACTAAAGAACAGGAC
* * * * * *
26608898 CTTTAGTGGCGCTTTTATCACAAATGCCACTAAAGAACATGATATTTAGCGACGCTTTTTATCAC
65 CTTTAGAGACGCTTTTATCACAAATGCCACTAAAGAACATGACATTTACCAACGCTTTTTACCAC
26608963 AAA
1 AAA
26608966 TGTCGCAAAA
Statistics
Matches: 112, Mismatches: 19, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
128 32 0.29
129 69 0.62
130 11 0.10
ACGTcount: A:0.35, C:0.23, G:0.16, T:0.25
Consensus pattern (129 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCGGCACTTCACCAAAAACGCCACTAAAGAACAGGACC
TTTAGAGACGCTTTTATCACAAATGCCACTAAAGAACATGACATTTACCAACGCTTTTTACCAC
Found at i:26613940 original size:23 final size:24
Alignment explanation
Indices: 26613901--26613954 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 24
26613891 CAAAATAATA
*
26613901 TTGTTTTGCTCTGCTAAAAATCTT
1 TTGTTTTGCTCTGCTAAAAAACTT
*
26613925 TTGTTTT-TTCTGCTAAAAAACTT
1 TTGTTTTGCTCTGCTAAAAAACTT
*
26613948 TTATTTT
1 TTGTTTT
26613955 ATTTTTTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.22, C:0.13, G:0.09, T:0.56
Consensus pattern (24 bp):
TTGTTTTGCTCTGCTAAAAAACTT
Found at i:26614630 original size:7 final size:7
Alignment explanation
Indices: 26614618--26614779 Score: 94
Period size: 7 Copynumber: 22.9 Consensus size: 7
26614608 ACTAATTAAT
26614618 CTAAACC
1 CTAAACC
26614625 CTAAACC
1 CTAAACC
26614632 CTAAACC
1 CTAAACC
* *
26614639 TTGAACC
1 CTAAACC
*
26614646 ATAAACC
1 CTAAACC
26614653 CTAAACC
1 CTAAACC
26614660 CTAAACC
1 CTAAACC
* *
26614667 TTTAAACT
1 -CTAAACC
*
26614675 GTAAACC
1 CTAAACC
* *
26614682 ATAAATC
1 CTAAACC
* *
26614689 ATAATCC
1 CTAAACC
26614696 CTAAACC
1 CTAAACC
* *
26614703 GTAATCC
1 CTAAACC
*
26614710 ATAAACC
1 CTAAACC
*
26614717 TTAAA--
1 CTAAACC
*
26614722 ATAGTAACTC
1 CTA--AAC-C
*
26614732 TTAAACC
1 CTAAACC
*
26614739 TTAAACC
1 CTAAACC
26614746 CTAAACC
1 CTAAACC
* *
26614753 ATATACC
1 CTAAACC
26614760 CTAAACC
1 CTAAACC
*
26614767 ATAAACC
1 CTAAACC
26614774 CTAAAC
1 CTAAAC
26614780 TATAATGATA
Statistics
Matches: 120, Mismatches: 29, Indels: 12
0.75 0.18 0.07
Matches are distributed among these distances:
5 2 0.02
7 108 0.90
8 8 0.07
10 2 0.02
ACGTcount: A:0.44, C:0.31, G:0.02, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:26614637 original size:14 final size:14
Alignment explanation
Indices: 26614618--26614784 Score: 113
Period size: 14 Copynumber: 11.8 Consensus size: 14
26614608 ACTAATTAAT
*
26614618 CTAAACCCTAAACC
1 CTAAACCATAAACC
* *
26614632 CTAAACCTTGAACC
1 CTAAACCATAAACC
* *
26614646 ATAAACCCTAAACC
1 CTAAACCATAAACC
* *
26614660 CTAAACCTTTAAACT
1 CTAAACC-ATAAACC
* *
26614675 GTAAACCATAAATC
1 CTAAACCATAAACC
* * *
26614689 ATAATCCCTAAACC
1 CTAAACCATAAACC
* *
26614703 GTAATCCATAAACC
1 CTAAACCATAAACC
*
26614717 TTAAA--ATAGTAACTC
1 CTAAACCATA--AAC-C
* *
26614732 TTAAACCTTAAACC
1 CTAAACCATAAACC
*
26614746 CTAAACCATATACC
1 CTAAACCATAAACC
26614760 CTAAACCATAAACC
1 CTAAACCATAAACC
*
26614774 CTAAACTATAA
1 CTAAACCATAA
26614785 TGATAATTAA
Statistics
Matches: 121, Mismatches: 26, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
12 3 0.02
14 96 0.79
15 20 0.17
17 2 0.02
ACGTcount: A:0.45, C:0.30, G:0.02, T:0.23
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:26615048 original size:40 final size:40
Alignment explanation
Indices: 26615004--26615187 Score: 217
Period size: 40 Copynumber: 4.6 Consensus size: 40
26614994 TTTTTTGCGA
** *
26615004 CGTTTTTCAAAAAGCGCCACTAATACTCGATATATAGCCG
1 CGTTTTTCAAAAAGCGCCACTAATACTCGACCTATAGCGG
* * ** * *
26615044 CGTTTTTCAAGAAGCACTGCTAATGCTCGACCTACAGCGG
1 CGTTTTTCAAAAAGCGCCACTAATACTCGACCTATAGCGG
* ** *
26615084 CGTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAGCAG
1 CGTTTTTCAAAAAGCGCCACTAATACTCGACCTATAGCGG
* *
26615124 CGTTTCTCAAAAAGCGCCACTAA-AGCTCGATCTATAGCGG
1 CGTTTTTCAAAAAGCGCCACTAATA-CTCGACCTATAGCGG
26615164 CGTTTTTCAAAAAGCGCCACTAAT
1 CGTTTTTCAAAAAGCGCCACTAAT
26615188 GCCTCTAAAG
Statistics
Matches: 120, Mismatches: 22, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
40 120 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (40 bp):
CGTTTTTCAAAAAGCGCCACTAATACTCGACCTATAGCGG
Found at i:26615152 original size:80 final size:80
Alignment explanation
Indices: 26615004--26615189 Score: 246
Period size: 80 Copynumber: 2.3 Consensus size: 80
26614994 TTTTTTGCGA
* * * * * ** *
26615004 CGTTTTTCAAAAAGCGCCACTAATACTCGATATATAGCCGCGTTTTTCAAGAAGCACTGCTAATG
1 CGTTTTTCAAAAAGCGCCACTAATGCTCGACATATAGCAGCGTTTCTCAAAAAGCACCACTAAAG
26615069 CTCGACCTACAGCGG
66 CTCGACCTACAGCGG
* * * *
26615084 CGTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAGCAGCGTTTCTCAAAAAGCGCCACTAAAG
1 CGTTTTTCAAAAAGCGCCACTAATGCTCGACATATAGCAGCGTTTCTCAAAAAGCACCACTAAAG
* *
26615149 CTCGATCTATAGCGG
66 CTCGACCTACAGCGG
26615164 CGTTTTTCAAAAAGCGCCACTAATGC
1 CGTTTTTCAAAAAGCGCCACTAATGC
26615190 CTCTAAAGCT
Statistics
Matches: 90, Mismatches: 16, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
80 90 1.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.25
Consensus pattern (80 bp):
CGTTTTTCAAAAAGCGCCACTAATGCTCGACATATAGCAGCGTTTCTCAAAAAGCACCACTAAAG
CTCGACCTACAGCGG
Found at i:26615291 original size:155 final size:155
Alignment explanation
Indices: 26615080--26615376 Score: 400
Period size: 155 Copynumber: 1.9 Consensus size: 155
26615070 TCGACCTACA
*
26615080 GCGGCGTTTTTCAAAAAGCGCCGCTAATGGTCGACCTATAGCAGCGTTTCTCAAAAAGCGCCACT
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGATCGACCTATAGCAGCGTTTCTCAAAAAGCGCCACT
* * *
26615145 AAAGCTCGATCTATAGCGGCGTTTTTCAA-AAAGCGCCACTAATGCCTCTAAAGCTCAACATAAA
66 AAAGCTCGATCTATAGCAGCGTTTTT-AAGAAAACGCCACTAATGCCACTAAAGCTCAACATAAA
26615209 ACGACAGCGTTGTGCTTAATTATTTT
130 ACGACAGCGTTGTGCTTAATTATTTT
* * * * * **
26615235 GCGGCGTTTTTTAGAAAGTGCCGCTAATGATCGACCTATAGCAGTGATTT-TCAAAAAGTGCTGC
1 GCGGCGTTTTTCAAAAAGCGCCGCTAATGATCGACCTATAGCAGCG-TTTCTCAAAAAGCGCCAC
* * * * *
26615299 TAATGCTTGATCTATAGTAGTGTTTTTAAGAAAACGCCGCTAATGCCACTAAAGCTCAACATAAA
65 TAAAGCTCGATCTATAGCAGCGTTTTTAAGAAAACGCCACTAATGCCACTAAAGCTCAACATAAA
**
26615364 ACGATGGCGTTGT
130 ACGACAGCGTTGT
26615377 ACGATCGCCA
Statistics
Matches: 122, Mismatches: 18, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
154 2 0.02
155 117 0.96
156 3 0.02
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.28
Consensus pattern (155 bp):
GCGGCGTTTTTCAAAAAGCGCCGCTAATGATCGACCTATAGCAGCGTTTCTCAAAAAGCGCCACT
AAAGCTCGATCTATAGCAGCGTTTTTAAGAAAACGCCACTAATGCCACTAAAGCTCAACATAAAA
CGACAGCGTTGTGCTTAATTATTTT
Found at i:26615314 original size:40 final size:40
Alignment explanation
Indices: 26615249--26615343 Score: 102
Period size: 40 Copynumber: 2.4 Consensus size: 40
26615239 CGTTTTTTAG
26615249 AAAGTGCCGCTAATGATCGACCTATAGCAGTGATTTTCAA
1 AAAGTGCCGCTAATGATCGACCTATAGCAGTGATTTTCAA
* * * * * *
26615289 AAAGTGCTGCTAATGCTTGATCTATAGTAGTG-TTTTTAA
1 AAAGTGCCGCTAATGATCGACCTATAGCAGTGATTTTCAA
**
26615328 GAAAACGCCGCTAATG
1 -AAAGTGCCGCTAATG
26615344 CCACTAAAGC
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
39 6 0.13
40 39 0.87
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.31
Consensus pattern (40 bp):
AAAGTGCCGCTAATGATCGACCTATAGCAGTGATTTTCAA
Found at i:26616619 original size:68 final size:68
Alignment explanation
Indices: 26616507--26616720 Score: 299
Period size: 68 Copynumber: 3.2 Consensus size: 68
26616497 CATAGTTCAA
* * * ** **
26616507 CTATGGTCTTACACAT-GA-ATTGTCATGGCCCTGCCATGGTCTTACATTTGTAGTGCCATAACC
1 CTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAACC
26616570 CAG
66 CAG
* *
26616573 CTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGCCTTACATTCATAGTGCCATAGCC
1 CTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAACC
26616638 CAG
66 CAG
*
26616641 CTATGGTCTTACATATAAACATT-TCCATGGTCCAACCATGGTCTTACGTTCATAGTGCCATAAC
1 CTATGGTCTTACATATAAACATTGT-CATGGTCCAACCATGGTCTTACATTCATAGTGCCATAAC
26616705 CCAG
65 CCAG
*
26616709 TTATGGTCTTAC
1 CTATGGTCTTAC
26616721 CTGTCAATTC
Statistics
Matches: 132, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
66 15 0.11
67 2 0.02
68 115 0.87
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (68 bp):
CTATGGTCTTACATATAAACATTGTCATGGTCCAACCATGGTCTTACATTCATAGTGCCATAACC
CAG
Found at i:26616654 original size:33 final size:33
Alignment explanation
Indices: 26616542--26616720 Score: 115
Period size: 33 Copynumber: 5.3 Consensus size: 33
26616532 TGGCCCTGCC
** *
26616542 ATGGTCTTACATTTGTAGTGCCATAACCCAGCT
1 ATGGTCTTACATTAATAGTGCCATAGCCCAGCT
* * * * * * *
26616575 ATGGTCTTACATATAAACATTGTCATGGTCCAACC
1 ATGGTCTTACAT-T-AATAGTGCCATAGCCCAGCT
* *
26616610 ATGGCCTTACATTCATAGTGCCATAGCCCAGCT
1 ATGGTCTTACATTAATAGTGCCATAGCCCAGCT
* * * * * * *
26616643 ATGGTCTTACATATAAACATTTCCATGGTCCAACC
1 ATGGTCTTACAT-T-AATAGTGCCATAGCCCAGCT
* * * *
26616678 ATGGTCTTACGTTCATAGTGCCATAACCCAGTT
1 ATGGTCTTACATTAATAGTGCCATAGCCCAGCT
26616711 ATGGTCTTAC
1 ATGGTCTTAC
26616721 CTGTCAATTC
Statistics
Matches: 103, Mismatches: 39, Indels: 8
0.69 0.26 0.05
Matches are distributed among these distances:
33 55 0.53
34 4 0.04
35 44 0.43
ACGTcount: A:0.27, C:0.25, G:0.16, T:0.32
Consensus pattern (33 bp):
ATGGTCTTACATTAATAGTGCCATAGCCCAGCT
Found at i:26616684 original size:35 final size:35
Alignment explanation
Indices: 26616575--26616687 Score: 115
Period size: 35 Copynumber: 3.3 Consensus size: 35
26616565 TAACCCAGCT
26616575 ATGGTCTTACATATAAACATTGT-CATGGTCCAACC
1 ATGGTCTTACATATAAACATT-TCCATGGTCCAACC
* * * * * * * * *
26616610 ATGGCCTTACAT-T-CATAGTGCCATAGCCCAGCT
1 ATGGTCTTACATATAAACATTTCCATGGTCCAACC
26616643 ATGGTCTTACATATAAACATTTCCATGGTCCAACC
1 ATGGTCTTACATATAAACATTTCCATGGTCCAACC
26616678 ATGGTCTTAC
1 ATGGTCTTAC
26616688 GTTCATAGTG
Statistics
Matches: 57, Mismatches: 18, Indels: 6
0.70 0.22 0.07
Matches are distributed among these distances:
33 22 0.39
34 2 0.04
35 33 0.58
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (35 bp):
ATGGTCTTACATATAAACATTTCCATGGTCCAACC
Found at i:26624543 original size:3 final size:3
Alignment explanation
Indices: 26624535--26624592 Score: 71
Period size: 3 Copynumber: 19.3 Consensus size: 3
26624525 TGAAACAATC
* * * * *
26624535 TAA TAA TAA TAT TAA TAA TGA TAA TGA TAA TGA TAA TAA TAA TAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26624583 TAA TAA TAA T
1 TAA TAA TAA T
26624593 CTGAGGTTTA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.59, C:0.02, G:0.05, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:26626041 original size:51 final size:51
Alignment explanation
Indices: 26625965--26626068 Score: 145
Period size: 51 Copynumber: 2.0 Consensus size: 51
26625955 TAGGATTTGT
* **
26625965 AGCTTCAATCCGTTCCACTGCAACGCTAGGGAAATAAGATTCGTTGTCTTC
1 AGCTTCAATCCGTTCCACTGCAACGCCAGGGAAATAAGATTCACTGTCTTC
* * * *
26626016 AGCTTTAATCTGTTCTACTGCAACGCCAGGGTAATAAGATTCACTGTCTTC
1 AGCTTCAATCCGTTCCACTGCAACGCCAGGGAAATAAGATTCACTGTCTTC
26626067 AG
1 AG
26626069 TCTGCTCCGC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (51 bp):
AGCTTCAATCCGTTCCACTGCAACGCCAGGGAAATAAGATTCACTGTCTTC
Found at i:26626256 original size:120 final size:120
Alignment explanation
Indices: 26626040--26626281 Score: 358
Period size: 120 Copynumber: 2.0 Consensus size: 120
26626030 CTACTGCAAC
* *
26626040 GCCAGGGTAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTGAAGGAGATAAGGCTGGA
1 GCCAGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGGCTGGA
*
26626105 GGCTCCAATCTACTTCACTGCAACTTAAGGAAGATAAGATCCGCCATAATTTGTA
66 GGCTCCAATCTACTCCACTGCAACTTAAGGAAGATAAGATCCGCCATAATTTGTA
* ** * *
26626160 GCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTTTGCTGCAACTTCAGGGAGATAAGGCTGGT
1 GCCAGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGGCTGGA
* * * ** *
26626225 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCGTAATTTGTA
66 GGCTCCAATCTACTCCACTGCAACTTAAGGAAGATAAGATCCGCCATAATTTGTA
26626280 GC
1 GC
26626282 TTTAATCTAT
Statistics
Matches: 108, Mismatches: 14, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
120 108 1.00
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (120 bp):
GCCAGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGGCTGGA
GGCTCCAATCTACTCCACTGCAACTTAAGGAAGATAAGATCCGCCATAATTTGTA
Found at i:26626511 original size:144 final size:143
Alignment explanation
Indices: 26626160--26626756 Score: 933
Period size: 144 Copynumber: 4.2 Consensus size: 143
26626150 ATAATTTGTA
**
26626160 GCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTTTGCTGCAACTTCAGGGAGATAAGGCTGGT
1 GCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGT
* *
26626225 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCGTAATTTGTAGCTTTAATCT
66 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCGCAATTTGTAGCTTTAATCT
*
26626290 ATTCCACTACAAC
131 ATTCCACTGCAAC
*
26626303 GCCAGGGAAATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGT
1 GCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGT
* *
26626368 GGCTTCAATTTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCTGCAATTTGTAGCTTTTAATC
66 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCGCAATTTGTAGC-TTTAATC
26626433 TATTCCACTGCAAC
130 TATTCCACTGCAAC
* * *
26626447 GCCAGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGGAACTTCAGGCAGATAAGGCTGGT
1 GCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGT
* *
26626512 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCTGCAATTTGTAACTTTTAATC
66 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCGCAATTTGTAGC-TTTAATC
*
26626577 TGTTCCACTGCAAC
130 TATTCCACTGCAAC
* * * * *
26626591 ACCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACTACCACTTCAGGGAGATAAGGTTGGT
1 GCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGT
* ** ** *
26626656 GGCTTCAATCTGCTCCACTGTAACTTCAGGAAGATAAGATTTACCATAATTTGTAGCTGTAATCT
66 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCGCAATTTGTAGCTTTAATCT
*
26626721 GTTCCACTGCAAC
131 ATTCCACTGCAAC
*
26626734 GCCAGGGAAATAAGATTCACTGT
1 GCCAGGGAAATAAGATTCGCTGT
26626757 AATGACTTCA
Statistics
Matches: 420, Mismatches: 33, Indels: 2
0.92 0.07 0.00
Matches are distributed among these distances:
143 156 0.37
144 264 0.63
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (143 bp):
GCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGT
GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCGCAATTTGTAGCTTTAATCT
ATTCCACTGCAAC
Found at i:26626682 original size:44 final size:45
Alignment explanation
Indices: 26626573--26626696 Score: 133
Period size: 44 Copynumber: 2.8 Consensus size: 45
26626563 TGTAACTTTT
* ** * *
26626573 AATCTGTTCCACTGCAACACCAGGGAAATAAGATTCGCTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTGGCTTC
* * * * *
26626618 AGTCTGCTCCACTACCACTTCAGGGAGATAAGGTT-GGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTGGCTTC
* *
26626662 AATCTGCTCCACTGTAACTTCAGGAAGATAAGATT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
26626697 TACCATAATT
Statistics
Matches: 63, Mismatches: 16, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
44 36 0.57
45 27 0.43
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.27
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCGCTGGCTTC
Found at i:26626728 original size:287 final size:287
Alignment explanation
Indices: 26626160--26626756 Score: 944
Period size: 287 Copynumber: 2.1 Consensus size: 287
26626150 ATAATTTGTA
* ** *
26626160 GCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTTTGCTGCAACTTCAGGGAGATAAGGCTGGT
1 GCCAGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGCAGATAAGGCTGGT
* * *
26626225 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTTGCCGTAATTTGTAGCTTTAATCT
66 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCGCAATTTGTAACTTTAATCT
* * * *
26626290 ATTCCACTACAACGCCAGGGAAATAAGATTCGCTGTCTTCAGTTTGCTCCGCTGCAACTTCAGGG
131 ATTCCACTACAACACCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACTACAACTTCAGGG
* * **
26626355 AGATAAGGCTGGTGGCTTCAATTTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCTGCAATTT
196 AGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCACCACAATTT
*
26626420 GTAGCTTTTAATCTATTCCACTGCAAC
261 GTAGCTTGTAATCTATTCCACTGCAAC
*
26626447 GCCAGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGGAACTTCAGGCAGATAAGGCTGGT
1 GCCAGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGCAGATAAGGCTGGT
*
26626512 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCTGCAATTTGTAACTTTTAATC
66 GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCGCAATTTGTAAC-TTTAATC
* * *
26626577 TGTTCCACTGCAACACCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACTACCACTTCAGG
130 TATTCCACTACAACACCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACTACAACTTCAGG
* * * *
26626642 GAGATAAGGTTGGTGGCTTCAATCTGCTCCACTGTAACTTCAGGAAGATAAGATTTACCATAATT
195 GAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCACCACAATT
*
26626707 TGTAGC-TGTAATCTGTTCCACTGCAAC
260 TGTAGCTTGTAATCTATTCCACTGCAAC
26626734 GCCAGGGAAATAAGATTCACTGT
1 GCCAGGGAAATAAGATTCACTGT
26626757 AATGACTTCA
Statistics
Matches: 283, Mismatches: 26, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
287 155 0.55
288 128 0.45
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (287 bp):
GCCAGGGAAATAAGATTCACTGTCTTCAGTCTGCTCCGCTGCAACTTCAGGCAGATAAGGCTGGT
GGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCGCCGCAATTTGTAACTTTAATCT
ATTCCACTACAACACCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCACTACAACTTCAGGG
AGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATTCACCACAATTT
GTAGCTTGTAATCTATTCCACTGCAAC
Found at i:26628044 original size:51 final size:48
Alignment explanation
Indices: 26627989--26628110 Score: 158
Period size: 46 Copynumber: 2.5 Consensus size: 48
26627979 TCTCAAGACA
* **
26627989 CCCTTTGCGGGTTTTCACCTTGGCCTCTCCTTTTTTTTTGAACTCAAAGCG
1 CCCTTTGCGGGTTTTCACCTTGGCCT-T--TCTTTTTAAGAACTCAAAGCG
*
26628040 CCCTTTGCGGGTTTTCACCTTGG--TTTCTTTTTAAGGACTCAAAGCG
1 CCCTTTGCGGGTTTTCACCTTGGCCTTTCTTTTTAAGAACTCAAAGCG
*
26628086 CCCTTTGGGGGTTTTCACCTTGGCC
1 CCCTTTGCGGGTTTTCACCTTGGCC
26628111 CCTTCTCCTT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
46 39 0.61
48 1 0.02
49 1 0.02
51 23 0.36
ACGTcount: A:0.11, C:0.28, G:0.21, T:0.39
Consensus pattern (48 bp):
CCCTTTGCGGGTTTTCACCTTGGCCTTTCTTTTTAAGAACTCAAAGCG
Found at i:26628559 original size:16 final size:15
Alignment explanation
Indices: 26628538--26628584 Score: 58
Period size: 16 Copynumber: 3.0 Consensus size: 15
26628528 CCCGGTAGAG
26628538 GTTTTTATTTCTTTTT
1 GTTTTT-TTTCTTTTT
*
26628554 GTTTTTTTTGTTTTTT
1 GTTTTTTTT-CTTTTT
*
26628570 GTTTTTTGTCTTTTT
1 GTTTTTTTTCTTTTT
26628585 TTTGTCTTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.02, C:0.04, G:0.11, T:0.83
Consensus pattern (15 bp):
GTTTTTTTTCTTTTT
Found at i:26628561 original size:9 final size:9
Alignment explanation
Indices: 26628539--26628598 Score: 61
Period size: 9 Copynumber: 6.8 Consensus size: 9
26628529 CCGGTAGAGG
*
26628539 TTTTTATTT
1 TTTTTGTTT
26628548 CTTTTTGTTT
1 -TTTTTGTTT
26628558 TTTTTG--T
1 TTTTTGTTT
26628565 TTTTTGTTT
1 TTTTTGTTT
* *
26628574 TTTGTCTTT
1 TTTTTGTTT
*
26628583 TTTTTGTCT
1 TTTTTGTTT
26628592 TTTTTGT
1 TTTTTGT
26628599 CCTCTACTAC
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
7 7 0.17
9 27 0.64
10 8 0.19
ACGTcount: A:0.02, C:0.05, G:0.10, T:0.83
Consensus pattern (9 bp):
TTTTTGTTT
Found at i:26628567 original size:7 final size:7
Alignment explanation
Indices: 26628557--26628598 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
26628547 TCTTTTTGTT
26628557 TTTTTTG
1 TTTTTTG
26628564 TTTTTTG
1 TTTTTTG
26628571 TTTTTTG
1 TTTTTTG
*
26628578 TCTTTT-
1 TTTTTTG
* *
26628584 TTTTGTC
1 TTTTTTG
26628591 TTTTTTG
1 TTTTTTG
26628598 T
1 T
26628599 CCTCTACTAC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
6 4 0.14
7 25 0.86
ACGTcount: A:0.00, C:0.05, G:0.12, T:0.83
Consensus pattern (7 bp):
TTTTTTG
Found at i:26634456 original size:3 final size:3
Alignment explanation
Indices: 26634448--26634498 Score: 50
Period size: 3 Copynumber: 17.0 Consensus size: 3
26634438 TGAAACAATC
* * * *
26634448 TAA TAA TAA TAT TAA TAA TGA TAA TGA TAA TGAA -AA TGA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA TAA TAA
26634493 TAA TAA
1 TAA TAA
26634499 CATAATCTGA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
2 2 0.05
3 34 0.89
4 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.08, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26637016 original size:49 final size:49
Alignment explanation
Indices: 26636917--26637016 Score: 123
Period size: 49 Copynumber: 2.0 Consensus size: 49
26636907 TTATTTTAGT
* * * * *
26636917 TTAGAATAAGGTTTTTCAGCCTTATTATACTTCATCTATTTGATATTGA
1 TTAGAATAAGGTGTTTCAACCTTACTATACTTAATCTATTAGATATTGA
26636966 TTAGAATAAGGTGTTTCAACCTTACTATAC-TAATTCTATTAGA-ATATGA
1 TTAGAATAAGGTGTTTCAACCTTACTATACTTAA-TCTATTAGATAT-TGA
26637015 TT
1 TT
26637017 TTACAAGCCT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
48 4 0.09
49 40 0.91
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (49 bp):
TTAGAATAAGGTGTTTCAACCTTACTATACTTAATCTATTAGATATTGA
Found at i:26646691 original size:16 final size:16
Alignment explanation
Indices: 26646672--26646702 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26646662 TGTTAATTTC
*
26646672 ATTTAATTTTAAAATT
1 ATTTAATATTAAAATT
26646688 ATTTAATATTAAAAT
1 ATTTAATATTAAAAT
26646703 AATACCAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (16 bp):
ATTTAATATTAAAATT
Found at i:26649187 original size:48 final size:48
Alignment explanation
Indices: 26649056--26649225 Score: 205
Period size: 48 Copynumber: 3.5 Consensus size: 48
26649046 GGTCACATAT
* *
26649056 GTGGCACGGACTGTGTGCAAGCCACCAATATTCTGTTAAGATACAAGG
1 GTGGCACGGACTGTGTGCAGGCCACCAAGATTCTGTTAAGATACAAGG
* * *
26649104 ATGACACGGACTGTGTGCAGGCCACCAATATTCTGTTAAGATACAAGG
1 GTGGCACGGACTGTGTGCAGGCCACCAAGATTCTGTTAAGATACAAGG
* * * * ** * *
26649152 GTGGCACAGACTATGTGCAGGCCACCGAGAGTCTGTTATTACACAAAG
1 GTGGCACGGACTGTGTGCAGGCCACCAAGATTCTGTTAAGATACAAGG
* *
26649200 GTGGTACGGACTGTGTGTAGGCCACC
1 GTGGCACGGACTGTGTGCAGGCCACC
26649226 GAGAAATTTG
Statistics
Matches: 104, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 104 1.00
ACGTcount: A:0.28, C:0.22, G:0.28, T:0.22
Consensus pattern (48 bp):
GTGGCACGGACTGTGTGCAGGCCACCAAGATTCTGTTAAGATACAAGG
Found at i:26652058 original size:12 final size:12
Alignment explanation
Indices: 26652041--26652066 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26652031 AGGATATGCA
26652041 ATCTTAGATATG
1 ATCTTAGATATG
26652053 ATCTTAGATATG
1 ATCTTAGATATG
26652065 AT
1 AT
26652067 ATGCAATCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATCTTAGATATG
Found at i:26652426 original size:3 final size:3
Alignment explanation
Indices: 26652418--26652453 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
26652408 TGTTATTAAG
* *
26652418 TTA TTA TTA TTG TTA TTA TTA TCA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26652454 CTATATATAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:26652611 original size:17 final size:17
Alignment explanation
Indices: 26652580--26652623 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
26652570 CATAACTTTT
*
26652580 ATATACA-TATATATAC
1 ATATACATTTTATATAC
*
26652596 ATTTACATTTTATATAC
1 ATATACATTTTATATAC
26652613 ATATACATTTT
1 ATATACATTTT
26652624 TTATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATACATTTTATATAC
Found at i:26652819 original size:30 final size:30
Alignment explanation
Indices: 26652758--26652826 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
26652748 TTTAATTTTA
* * *
26652758 ATATATGTAATTATTATTATTTGTTTATAT
1 ATATATGTAATTATCATTATTTATATATAT
*
26652788 ATATATGTAATTATCATT-TTTATAATCTAT
1 ATATATGTAATTATCATTATTTAT-ATATAT
26652818 ATATATGTA
1 ATATATGTA
26652827 TATAATTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 4 0.12
30 30 0.88
ACGTcount: A:0.36, C:0.03, G:0.06, T:0.55
Consensus pattern (30 bp):
ATATATGTAATTATCATTATTTATATATAT
Found at i:26652838 original size:30 final size:27
Alignment explanation
Indices: 26652783--26652862 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 27
26652773 ATTATTTGTT
* *
26652783 TATATATATATGTAATTATCATTTTTATAA
1 TATATATATATGT-A-TAT-ATTTTTTTTA
*
26652813 TCTATATATATGTATATAATTTTTTTTA
1 TATATATATATGTATAT-ATTTTTTTTA
* *
26652841 TATATGTACATGTATATATTTT
1 TATATATATATGTATATATTTT
26652863 GTACCCTTTT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
27 5 0.12
28 25 0.58
29 1 0.02
30 12 0.28
ACGTcount: A:0.35, C:0.04, G:0.05, T:0.56
Consensus pattern (27 bp):
TATATATATATGTATATATTTTTTTTA
Found at i:26652844 original size:26 final size:26
Alignment explanation
Indices: 26652718--26652862 Score: 71
Period size: 30 Copynumber: 5.3 Consensus size: 26
26652708 ATTATTCTTC
* * * *
26652718 ATAAATTTTTTTATATATATTTCTAA
1 ATAATTTTTTTTATATATATATGTAT
* **
26652744 ATTATTTAATTT-TA-ATATATGTAATT
1 ATAATTTTTTTTATATATATATGT-A-T
*
26652770 ATTATTATTTGTTTATATATATATGTAATT
1 ATAATT-TTT-TTTATATATATATGT-A-T
* * *
26652800 ATCATTTTTATAATCTATATATATGTAT
1 ATAATTTTT-T-TTATATATATATGTAT
*
26652828 ATAATTTTTTTTATATATGTACATGTAT
1 ATAATTTTTTTTATATA--TATATGTAT
26652856 AT-ATTTT
1 ATAATTTT
26652863 GTACCCTTTT
Statistics
Matches: 93, Mismatches: 17, Indels: 17
0.73 0.13 0.13
Matches are distributed among these distances:
24 6 0.06
25 3 0.03
26 19 0.20
27 7 0.08
28 22 0.24
29 7 0.08
30 29 0.31
ACGTcount: A:0.35, C:0.03, G:0.04, T:0.58
Consensus pattern (26 bp):
ATAATTTTTTTTATATATATATGTAT
Found at i:26656118 original size:16 final size:16
Alignment explanation
Indices: 26656097--26656136 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
26656087 ATATTGCCCA
*
26656097 AAAAAAAAGATGGCGC
1 AAAAAAAAGATGGCAC
*
26656113 AAAAAAATGATGGCAC
1 AAAAAAAAGATGGCAC
26656129 AAAAAAAA
1 AAAAAAAA
26656137 AACTCTACCG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.65, C:0.10, G:0.17, T:0.07
Consensus pattern (16 bp):
AAAAAAAAGATGGCAC
Found at i:26657804 original size:44 final size:44
Alignment explanation
Indices: 26657748--26658366 Score: 563
Period size: 44 Copynumber: 14.0 Consensus size: 44
26657738 AGCAGGTCCA
*
26657748 GTCTTTCTATATTGGTAGCGAAGT-GAATCGAAGATGCAGATCTT
1 GTCTTCCTATATTGGTAGCGAAGTAG-ATCGAAGATGCAGATCTT
* * * *
26657792 GTCTTCCCATATTGGTGGCTG-AGTAGATCGAAGAAAGTAGATCTT
1 GTCTTCCTATATTGGTAGC-GAAGTAGATCGAAG-ATGCAGATCTT
* * * * * * *
26657837 GTCTTCATGTATTGG-CGTGAAGTAGGTCGAAGATAGCAGGTCAT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGATCTT
*
26657881 GTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTT
* * * * *
26657924 GTCTTCCAATATTGGTGGCGGAGTGTAGATCAAAGAAAGCAGATCTT
1 GTCTTCCTATATTGGTAGC-GA-AGTAGATCGAAG-ATGCAGATCTT
* * * * *
26657971 GTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGATCTT
*
26658015 GTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTT
* * * * * *
26658059 GTATTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCCT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGATCTT
* *
26658103 GTCTTCCTATATTGGTAGCGAAGTGGATAGAAGATGCAGATCTT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTT
* * * *
26658147 GTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATGCAGATCTT
* * * * * *
26658192 GTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGGTCCT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGATCTT
* * *
26658236 GTCTTCTTATATTGTTAG-GAAGTGGATCGAAGATGCAGATCTT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTT
* * * * *
26658279 GTCTTCCCATACTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAG-ATGCAGATCTT
** * * *
26658324 GTCTTTATGTATTGG-CGTGAAGTAGATCGAAGATAGCAGATCT
1 GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGAT-GCAGATCT
26658367 AGCCTTCTTG
Statistics
Matches: 458, Mismatches: 97, Indels: 40
0.77 0.16 0.07
Matches are distributed among these distances:
43 64 0.14
44 261 0.57
45 101 0.22
46 10 0.02
47 22 0.05
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (44 bp):
GTCTTCCTATATTGGTAGCGAAGTAGATCGAAGATGCAGATCTT
Found at i:26658142 original size:132 final size:132
Alignment explanation
Indices: 26657732--26658365 Score: 708
Period size: 132 Copynumber: 4.8 Consensus size: 132
26657722 GCATATCAAT
* * * *
26657732 GAAGATAGCAGGTCCAGTCTTTCTATATTGGTAGCGAAGTGAATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
*** * * * * * *
26657797 CCCATATTGGTGGCTG-AGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTA
66 CATGTATTGG-CG-TGAAGTAGATCGAAGATAGCAGATCCTGTCTTCATATATTGGAGTGAAGT-
26657861 GG-TC
128 GGATC
* *
26657865 GAAGATAGCAGGTCATGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
* * * * * * *
26657929 CCA-ATATTGGTGGCG-GAGTGTAGATCAAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
66 -CATGTA-T--TGGCGTGA-AGTAGATCGAAGATAGCAGATCCTGTCTTCATATATTGGAGTGAA
*
26657992 GTAGATC
126 GTGGATC
*
26657999 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTATT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
* *
26658064 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGG
66 CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCATATATTGG-AGTGAAGTGG
*
26658129 ATA
130 ATC
* * * * * *
26658132 GAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCAGATCTTGTCT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTCT
* * *
26658196 TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTGTCTTCTTATATTGTTAG-GAAGTG
65 TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCATATATTG-GAGTGAAGTG
26658260 GATC
129 GATC
* * * * * * *
26658264 GAAGAT-GCAGATCTTGTCTTCCCATACTGGTGGCAAAGTAGATCGAAGAAAGCAGATCTTGTCT
1 GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAG-ATGCAGATCTTGTCT
*
26658328 TTATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATC
65 TCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATC
26658366 TAGCCTTCTT
Statistics
Matches: 450, Mismatches: 38, Indels: 27
0.87 0.07 0.05
Matches are distributed among these distances:
132 216 0.48
133 118 0.26
134 82 0.18
135 34 0.08
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (132 bp):
GAAGATAGCAGATCCTGTCTTCCTATATTGGTAGCGAAGTGGATCGAAGATGCAGATCTTGTCTT
CATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCCTGTCTTCATATATTGGAGTGAAGTGGA
TC
Found at i:26658428 original size:44 final size:45
Alignment explanation
Indices: 26658342--26658514 Score: 143
Period size: 44 Copynumber: 3.8 Consensus size: 45
26658332 GTATTGGCGT
* * * * * *
26658342 GAAGTAGATCGAAGATAGCAGATCTAGCCTTCTTGCACCGACAGC
1 GAAGCAGATCGAAGACACCAGATCTTGCCTCCCTGCACCGACAGC
26658387 GAAGCAGATCGAAGACACCAG-TCTTGCCTCCCTGCACCGACAGC
1 GAAGCAGATCGAAGACACCAGATCTTGCCTCCCTGCACCGACAGC
* * * * ** * *
26658431 GACAGCGGAGCAGGCTAAAAATAGTAGATCTTGCCTTCCTGCACCGATAGC
1 GA-AGC--AG-A-TC-GAAGACACCAGATCTTGCCTCCCTGCACCGACAGC
*
26658482 GAAGCAGATCGAAGACACCAG-CCTTGCCTCCCT
1 GAAGCAGATCGAAGACACCAGATCTTGCCTCCCT
26658515 AGGTTACAGC
Statistics
Matches: 99, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
44 32 0.32
45 27 0.27
46 1 0.01
47 3 0.03
48 3 0.03
49 1 0.01
50 9 0.09
51 23 0.23
ACGTcount: A:0.29, C:0.30, G:0.24, T:0.17
Consensus pattern (45 bp):
GAAGCAGATCGAAGACACCAGATCTTGCCTCCCTGCACCGACAGC
Found at i:26658483 original size:95 final size:89
Alignment explanation
Indices: 26658356--26658680 Score: 386
Period size: 88 Copynumber: 3.6 Consensus size: 89
26658346 TAGATCGAAG
* * *
26658356 ATAGCAGATCTAGCCTTCTTGCACCGACAGCGAAGCAGATCGAAGACACCAGTCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
26658421 CACCGACAGCGACAGCGGAGCAGGCTAAAA
66 -A--G---GTGACAGCAGAGCAGGCTAAAA
* *
26658451 ATAGTAGATCTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCT-
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
*
26658515 AGGTTACAGCAGAGCAGGCTAAAA
66 AGGTGACAGCAGAGCAGGCTAAAA
* * * * * * *
26658539 ATAACAGATCTTGCTTTCCTGCACTGATAGTGAAGCAAATTGAAGACACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
* *
26658604 -GGTTG-CAGCAGAGCAAGTTAAAA
66 AGG-TGACAGCAGAGCAGGCTAAAA
* * *
26658627 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATCGATGACCCCAGCC
1 ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCC
26658681 CTATCTCCCT
Statistics
Matches: 200, Mismatches: 28, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
88 138 0.69
89 1 0.00
91 1 0.00
93 1 0.00
95 59 0.29
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (89 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCCTG
AGGTGACAGCAGAGCAGGCTAAAA
Found at i:26658712 original size:88 final size:87
Alignment explanation
Indices: 26658446--26658713 Score: 290
Period size: 88 Copynumber: 3.0 Consensus size: 87
26658436 CGGAGCAGGC
*
26658446 TAAAAATAGTAGATCTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
26658511 CCCTAGGTTACAGCAGAG-CAGGC
66 CCCTAGG-T-CAGCAGAGAAAGGT
* * * * * *
26658534 TAAAAATAACAGATCTTGCTTTCCTGCACTGATAGTGAAGCAAATTGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
* *
26658599 CCCTGGGTTGCAGCAGAGCAA-GT
66 CCCTAGG-T-CAGCAGAGAAAGGT
* * * * * **
26658622 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGTAGATCGATGACCCCAGCCCTATCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
*
26658687 CCCT-GGTCAGCAGTGGAATAGGT
66 CCCTAGGTCAGCAG-AGAA-AGGT
26658710 TAAA
1 TAAA
26658714 GATTGTGAAT
Statistics
Matches: 150, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
85 6 0.04
86 3 0.02
87 3 0.02
88 137 0.91
89 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.22
Consensus pattern (87 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCACCGATAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
CCCTAGGTCAGCAGAGAAAGGT
Found at i:26658878 original size:44 final size:44
Alignment explanation
Indices: 26658680--26658889 Score: 271
Period size: 44 Copynumber: 4.8 Consensus size: 44
26658670 TGACCCCAGC
*
26658680 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* *
26658724 CCTATCTCCCTGGTCAGTAGTGGAATAGGTTGAAGATTGAGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * * * *
26658768 TCTATCTCCCTGGGCAGCAGTGGAATAGATTAAAGATTGT-AGTT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGA-AT
* *
26658812 TCTATCTCCCTGGTCAACAGTGGAATAGGTTGAAGATTGTGAAT
1 CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
* * *
26658856 CCTATCTCCCTTAG-CAGTAGTGGATTAGGTTGAA
1 CCTATCTCCC-TGGTCAGCAGTGGAATAGGTTGAA
26658890 AATAGCAGAT
Statistics
Matches: 143, Mismatches: 20, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
43 1 0.01
44 139 0.97
45 3 0.02
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (44 bp):
CCTATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAAT
Found at i:26659695 original size:12 final size:12
Alignment explanation
Indices: 26659678--26659703 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26659668 AGGATATGCA
26659678 ATCTTAGATATG
1 ATCTTAGATATG
26659690 ATCTTAGATATG
1 ATCTTAGATATG
26659702 AT
1 AT
26659704 ATATGCAATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.15, T:0.42
Consensus pattern (12 bp):
ATCTTAGATATG
Found at i:26659726 original size:19 final size:20
Alignment explanation
Indices: 26659690--26659737 Score: 80
Period size: 19 Copynumber: 2.4 Consensus size: 20
26659680 CTTAGATATG
26659690 ATCTTAGATATGATATATGCA
1 ATCTTAGATATGA-ATATGCA
26659711 ATCTTAGATATG-ATATGCA
1 ATCTTAGATATGAATATGCA
26659730 ATCTTAGA
1 ATCTTAGA
26659738 AGATATGATT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 15 0.56
21 12 0.44
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.38
Consensus pattern (20 bp):
ATCTTAGATATGAATATGCA
Found at i:26659763 original size:22 final size:22
Alignment explanation
Indices: 26659716--26659760 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
26659706 ATGCAATCTT
*
26659716 AGATATGATATGCAATCTTAGA
1 AGATATGATATGCAATATTAGA
* *
26659738 AGATATGATTTTGTAATATTAGA
1 AGATATGA-TATGCAATATTAGA
26659761 GATTTAATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.40, C:0.04, G:0.18, T:0.38
Consensus pattern (22 bp):
AGATATGATATGCAATATTAGA
Found at i:26660264 original size:17 final size:17
Alignment explanation
Indices: 26660233--26660276 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
26660223 CATAACTTTT
*
26660233 ATATACA-TATATATAC
1 ATATACATTTTATATAC
*
26660249 ATTTACATTTTATATAC
1 ATATACATTTTATATAC
26660266 ATATACATTTT
1 ATATACATTTT
26660277 TTATTTCCTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
16 6 0.25
17 18 0.75
ACGTcount: A:0.41, C:0.11, G:0.00, T:0.48
Consensus pattern (17 bp):
ATATACATTTTATATAC
Found at i:26660493 original size:30 final size:30
Alignment explanation
Indices: 26660440--26660496 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
26660430 TATTTGTTTA
*
26660440 TATATATATGTAATTATCATTTTTATAATC
1 TATATATATGTAATAATCATTTTTATAATC
*
26660470 TATATATATGTATATAAT-TTTTTTATA
1 TATATATATGTA-ATAATCATTTTTATA
26660497 TATGTACATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (30 bp):
TATATATATGTAATAATCATTTTTATAATC
Found at i:26679406 original size:41 final size:42
Alignment explanation
Indices: 26679338--26679423 Score: 120
Period size: 41 Copynumber: 2.1 Consensus size: 42
26679328 AAACACATCC
*
26679338 TTTTCATTTGTTATCCTTTCCGGATAACATCCTTTTCAA-CA
1 TTTTCATTTGTTATCCTTTCCGAATAACATCCTTTTCAACCA
** * *
26679379 TTTTCATTTGTTATCCTTTTTGAATAACTTCCTTTTGAACCA
1 TTTTCATTTGTTATCCTTTCCGAATAACATCCTTTTCAACCA
26679421 TTT
1 TTT
26679424 CATGGATTCA
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
41 34 0.87
42 5 0.13
ACGTcount: A:0.21, C:0.21, G:0.07, T:0.51
Consensus pattern (42 bp):
TTTTCATTTGTTATCCTTTCCGAATAACATCCTTTTCAACCA
Found at i:26681561 original size:15 final size:15
Alignment explanation
Indices: 26681541--26681571 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26681531 AATGTCACAA
26681541 ATACAACAATGGCAT
1 ATACAACAATGGCAT
*
26681556 ATACAATAATGGCAT
1 ATACAACAATGGCAT
26681571 A
1 A
26681572 GAAATAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.23
Consensus pattern (15 bp):
ATACAACAATGGCAT
Found at i:26683768 original size:43 final size:44
Alignment explanation
Indices: 26683706--26683821 Score: 189
Period size: 43 Copynumber: 2.7 Consensus size: 44
26683696 CTTGTGTCTA
*
26683706 CTCCACTGCAACTTTAGGGAGATAAGATTATCGGCTTTAATCTG
1 CTCCACTGCAACTTTAGGGAGATAAGATTATCGGCCTTAATCTG
* *
26683750 CTCCAC-GCAACTTTAGGGAGATAGGATTATTGGCCTTAATCTG
1 CTCCACTGCAACTTTAGGGAGATAAGATTATCGGCCTTAATCTG
*
26683793 CTCCACTACAACTTTAGGGAGATAAGATT
1 CTCCACTGCAACTTTAGGGAGATAAGATT
26683822 CGCCCACTTC
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
43 40 0.61
44 26 0.39
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (44 bp):
CTCCACTGCAACTTTAGGGAGATAAGATTATCGGCCTTAATCTG
Found at i:26684083 original size:132 final size:132
Alignment explanation
Indices: 26683846--26684577 Score: 1160
Period size: 132 Copynumber: 5.5 Consensus size: 132
26683836 TGCCTCACTG
* * * * * *
26683846 CCAATTTAAGAAGACAGAATCTGTTATTTTCGATCCACTTCATGCCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* * * *
26683911 TGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCC
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTATCTTCGATCCACTTCC
26683976 TA
131 TA
* * * * *
26683978 CCAATATAGGAAGACAGGATCTGCTACCTTCGATCTACTTCACGCTAACACATGAAGACGAGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* *
26684043 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTATATCTTCGATCCACTTTG
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTATCTTCGATCCAC-TTC
26684108 CTA
130 CTA
*
26684111 CCAATATAGGAAGACAGGATCTATTATCTTCGATCTACTTCACG-CAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* *
26684175 TGCTTTCTTCGATCTACTTCGCCATCAGTATGGGAAGACAAGATCTGTATCTTCGATCCACTTTG
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTATCTTCGATCCAC-TTC
26684240 CTA
130 CTA
*
26684243 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGGCAAGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
**
26684308 TATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTATCTTCGATCCACTTCG
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTATCTTCGATCCACTTC-
26684373 CTA
130 CTA
* * *
26684376 CCAATATAGGAAGACAGGATATGTTATCTTCGATCTACTTCACGCCACTACATGAAGACAGGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* *
26684441 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCCACTTCC
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTATCTTCGATCCACTTCC
26684506 TA
131 TA
* *
26684508 CCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
26684573 TGCTT
66 TGCTT
26684578 CTTTTTAGCC
Statistics
Matches: 553, Mismatches: 44, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
132 306 0.55
133 247 0.45
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.29
Consensus pattern (132 bp):
CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTATCTTCGATCCACTTCC
TA
Found at i:26684328 original size:265 final size:265
Alignment explanation
Indices: 26683846--26684573 Score: 1197
Period size: 265 Copynumber: 2.7 Consensus size: 265
26683836 TGCCTCACTG
* * * * * *
26683846 CCAATTTAAGAAGACAGAATCTGTTATTTTCGATCCACTTCATGCCAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* *
26683911 TGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTTGATCCACTTCC
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCCACTTCC
* * * *
26683976 TACCAATATAGGAAGACAGGATCTGCTACCTTCGATCTACTTCACGCTAACACATGAAGACGAGA
131 TACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGA
*
26684041 TCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTATATCTTCGATCCACTT
196 TCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTATATCTTCGATCCACTT
*
26684106 TGCTA
261 CGCTA
*
26684111 CCAATATAGGAAGACAGGATCTATTATCTTCGATCTACTTCACG-CAATACATGAAGACAAGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
* * * *
26684175 TGCTTTCTTCGATCTACTTCGCCATCAGTATGGGAAGACAAGATCTGTATCTTCGATCCACTTTG
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCCAC-TTC
* *
26684240 CTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGGCAAG
130 CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAG
* *
26684305 ATCTATTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGTATCTTCGATCCACT
195 ATCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTATATCTTCGATCCACT
26684370 TCGCTA
260 TCGCTA
* * *
26684376 CCAATATAGGAAGACAGGATATGTTATCTTCGATCTACTTCACGCCACTACATGAAGACAGGATC
1 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
26684441 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCCACTTCC
66 TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCCACTTCC
*
26684506 TACCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCACGCCAATACATGAAGACAAGA
131 TACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGA
26684571 TCT
196 TCT
26684574 GCTTCTTTTT
Statistics
Matches: 427, Mismatches: 34, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
264 76 0.18
265 275 0.64
266 76 0.18
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (265 bp):
CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATC
TGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCCACTTCC
TACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGA
TCTACTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTATATCTTCGATCCACTT
CGCTA
Found at i:26684575 original size:44 final size:44
Alignment explanation
Indices: 26683846--26684580 Score: 617
Period size: 44 Copynumber: 16.7 Consensus size: 44
26683836 TGCCTCACTG
* * * * * **
26683846 CCAATTTAAGAAGAC-AGAATCTGTTATTTTCGATCCACTTCATG
1 CCAATATAGGAAGACAAG-ATCTGCTATCTTCGATCTACTTCACA
* * *
26683890 CCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCA-CA
* * *
26683935 CCAATATGGGAAGACAAGATCTGC-ATCTTTGATCCACTTC-CTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * *
26683978 CCAATATAGGAAGACAGGATCTGCTACCTTCGATCTACTTCACG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * * * * *
26684022 CTAACACATGAAGACGAGATCTGCTTTCTTCGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACA
* * * * **
26684067 CCAGTATGGGAAGACAAGATCT-ATATCTTCGATCCACTTTGCTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* **
26684111 CCAATATAGGAAGACAGGATCTATTATCTTCGATCTACTTCAC-
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * * *
26684154 GCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACA
* * * * **
26684199 TCAGTATGGGAAGACAAGATCTG-TATCTTCGATCCACTTTGCTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * *
26684243 CCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * ** * *
26684287 CCAATACATGAAGGCAAGATCTATTTTCTTCGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACA
* * * *
26684332 CCAGTATGGGAAGACAAGATCTG-TATCTTCGATCCACTTCGCTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * * *
26684376 CCAATATAGGAAGACAGGATATGTTATCTTCGATCTACTTCACG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* * * * * *
26684420 CCACTACATGAAGACAGGATCTGCTTTCTTCGATCTACTTCGCCA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTC-ACA
* * * *
26684465 CCAGTATGGGAAGACAAGATCTGC-ATCTTTGATCCACTTC-CTA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCAC-A
* * *
26684508 CCAATATAGGAAGACAGGATCTGCTATCTTTGATCTACTTCACG
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
* *
26684552 CCAATACATGAAGACAAGATCTGCT-TCTT
1 CCAATATAGGAAGACAAGATCTGCTATCTT
26684581 TTTAGCCTGC
Statistics
Matches: 549, Mismatches: 123, Indels: 39
0.77 0.17 0.05
Matches are distributed among these distances:
42 2 0.00
43 86 0.16
44 315 0.57
45 146 0.27
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (44 bp):
CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACA
Found at i:26699407 original size:20 final size:20
Alignment explanation
Indices: 26699382--26699419 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
26699372 ACTCGTAAAC
26699382 ATTAAATAAATATTTAAAAA
1 ATTAAATAAATATTTAAAAA
26699402 ATTAAATAAATATTTAAA
1 ATTAAATAAATATTTAAA
26699420 CACTAACTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (20 bp):
ATTAAATAAATATTTAAAAA
Found at i:26702853 original size:13 final size:13
Alignment explanation
Indices: 26702835--26702868 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
26702825 GTGTGGGCCT
26702835 ACATGGGCATGCA
1 ACATGGGCATGCA
26702848 ACATGGGCATGCA
1 ACATGGGCATGCA
*
26702861 ACGTGGGC
1 ACATGGGC
26702869 CTATGGGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.26, C:0.24, G:0.35, T:0.15
Consensus pattern (13 bp):
ACATGGGCATGCA
Found at i:26713979 original size:24 final size:24
Alignment explanation
Indices: 26713958--26714014 Score: 87
Period size: 24 Copynumber: 2.4 Consensus size: 24
26713948 AAGATTTAGT
*
26713958 ATTTATTAGTATAATATATTTAAC
1 ATTTATTAGCATAATATATTTAAC
*
26713982 ATTTATTAGCATAATATATTTGAC
1 ATTTATTAGCATAATATATTTAAC
*
26714006 ATTGATTAG
1 ATTTATTAG
26714015 AATTAGGTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.39, C:0.05, G:0.09, T:0.47
Consensus pattern (24 bp):
ATTTATTAGCATAATATATTTAAC
Found at i:26723460 original size:110 final size:112
Alignment explanation
Indices: 26723335--26723558 Score: 321
Period size: 112 Copynumber: 2.0 Consensus size: 112
26723325 GAAATTTTAA
* *
26723335 AACAACAATATTTAAAATTAGTACTT-A-TTCTTTTCTCAT-GGTTTAATTTTGATTAAACGTTT
1 AACAACAATATTTAAAATTAATACTTAATTTCTTTTCTC-TCGGTTTAATTTTGATTAAACCTTT
* * * *
26723397 GCTTTTGAAATTCTAT-TTCCAAGATTTGCTTTATCAGTATTTTAAATT
65 GCTTTTGAAATTCTATCTT-CAACATTTGCTTTACCAATATTTAAAATT
* *
26723445 AACAATAATATTTAAAATTAATACTTAATTTTTTTTCTCTCGGTTTAATTTTGATTAAACCTTTG
1 AACAACAATATTTAAAATTAATACTTAATTTCTTTTCTCTCGGTTTAATTTTGATTAAACCTTTG
*
26723510 CTTTTGAAATTCTATCTTCAACATTTTCTTTACCAATATTTAAAATT
66 CTTTTGAAATTCTATCTTCAACATTTGCTTTACCAATATTTAAAATT
26723557 AA
1 AA
26723559 TATATTATAA
Statistics
Matches: 101, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
110 24 0.24
111 2 0.02
112 73 0.72
113 2 0.02
ACGTcount: A:0.33, C:0.12, G:0.07, T:0.48
Consensus pattern (112 bp):
AACAACAATATTTAAAATTAATACTTAATTTCTTTTCTCTCGGTTTAATTTTGATTAAACCTTTG
CTTTTGAAATTCTATCTTCAACATTTGCTTTACCAATATTTAAAATT
Found at i:26723803 original size:5 final size:5
Alignment explanation
Indices: 26723793--26723880 Score: 97
Period size: 5 Copynumber: 17.4 Consensus size: 5
26723783 GCTTAGACAC
* * * *
26723793 ATATA ATATA ATATA ATATA AT-TT ATATT ATATT ATATT ATATT ATATT
1 ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT ATATT
* *
26723842 ATATT ATGTT ATATT ATATT AGTATTT ATATT GTATT AT
1 ATATT ATATT ATATT ATATT A-TA-TT ATATT ATATT AT
26723881 TTTAAAATTA
Statistics
Matches: 75, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
4 3 0.04
5 65 0.87
6 4 0.05
7 3 0.04
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (5 bp):
ATATT
Found at i:26724376 original size:22 final size:22
Alignment explanation
Indices: 26724321--26724378 Score: 71
Period size: 22 Copynumber: 2.6 Consensus size: 22
26724311 CAGGAGAGCC
**
26724321 TTGTCTCAAGATGTATGATAAA
1 TTGTCTCAAGACATATGATAAA
** *
26724343 TTGTCTTGAGACATATGGTAAA
1 TTGTCTCAAGACATATGATAAA
26724365 TTGTCTCAAGACAT
1 TTGTCTCAAGACAT
26724379 GCACATTTTG
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.33, C:0.12, G:0.19, T:0.36
Consensus pattern (22 bp):
TTGTCTCAAGACATATGATAAA
Found at i:26740178 original size:137 final size:137
Alignment explanation
Indices: 26739995--26740428 Score: 541
Period size: 137 Copynumber: 3.2 Consensus size: 137
26739985 TTACTAACTG
* *
26739995 CTTTGGAGGCTACGAA-CTTAAATTGTCAAACCTTTCTGACATCAGCTAGGAGCGTAGGTCCGCT
1 CTTTGGAGGCTAC-AATTTTAAATTGTCAAACCTTTATGACATCAGCTAGGAGCGTAGGTCCGCT
* ** * * *
26740059 AGCTGTGTCGGAGCTGTGAGCTTAACTTTGCAAGCTCTTATAATGTCAGCTGGGAACGTAGGTCC
65 AGCTGTGTCAGAGCTACGAGCTTAACTTTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCC
26740124 GCTAGCTA
130 GCTAGCTA
** * * * *
26740132 CTTTGGAGGCTATGATTTTAAATTGTCAAACTTTTATGACATCAGCTGGGAGCATAGGTTCGCTA
1 CTTTGGAGGCTACAATTTTAAATTGTCAAACCTTTATGACATCAGCTAGGAGCGTAGGTCCGCTA
* * * * ** *
26740197 GTTGTGTCAGAGCTACGAGCTTAACTCTACGAGCTCTTACAATGTTATTTGGGAGCGTAGGTCTG
66 GCTGTGTCAGAGCTACGAGCTTAACTTTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCCG
26740262 CTAGCTA
131 CTAGCTA
* * * * * *
26740269 CTTTAGAAGCTACAATATTAAATCGTCAAACCTTTATGACATCAG-TTGGAAGCGTAGG-CCTTC
1 CTTTGGAGGCTACAATTTTAAATTGTCAAACCTTTATGACATCAGCTAGG-AGCGTAGGTCC-GC
*
26740332 TAGCTGTGTCAAAGCTACGAGCTTAACTTTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTC
64 TAGCTGTGTCAGAGCTACGAGCTTAACTTTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTC
* * *
26740397 CACTAGTTG
129 CGCTAGCTA
26740406 CTTTGGAGGCTACAATTTTAAAT
1 CTTTGGAGGCTACAATTTTAAAT
26740429 CCACAAACCT
Statistics
Matches: 248, Mismatches: 46, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
136 5 0.02
137 243 0.98
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (137 bp):
CTTTGGAGGCTACAATTTTAAATTGTCAAACCTTTATGACATCAGCTAGGAGCGTAGGTCCGCTA
GCTGTGTCAGAGCTACGAGCTTAACTTTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCCG
CTAGCTA
Found at i:26740196 original size:69 final size:68
Alignment explanation
Indices: 26739995--26740197 Score: 194
Period size: 68 Copynumber: 3.0 Consensus size: 68
26739985 TTACTAACTG
* * * *
26739995 CTTTGGAGGCTACGAACTTAAATTGTCAAACCTTTCTGACATCAGCTAGGAGCGTAGGTCCGCTA
1 CTTTGGAGGCTATGAACTTAAATTGTCAAACTTTTATGACATCAGCTGGGAGCGTAGGTCCGCTA
26740060 GCT
66 GCT
* * * * * * * * ** *
26740063 GTGTCGGA-GCTGTGAGCTTAACTT-TGCAAGCTCTTATAATGTCAGCTGGGAACGTAGGTCCGC
1 CT-TTGGAGGCTATGAACTTAAATTGT-CAAACTTTTATGACATCAGCTGGGAGCGTAGGTCCGC
26740126 TAGCT
64 TAGCT
** * *
26740131 ACTTTGGAGGCTATGATTTTAAATTGTCAAACTTTTATGACATCAGCTGGGAGCATAGGTTCGCT
1 -CTTTGGAGGCTATGAACTTAAATTGTCAAACTTTTATGACATCAGCTGGGAGCGTAGGTCCGCT
26740196 AG
65 AG
26740198 TTGTGTCAGA
Statistics
Matches: 101, Mismatches: 29, Indels: 9
0.73 0.21 0.06
Matches are distributed among these distances:
67 1 0.01
68 50 0.50
69 49 0.49
70 1 0.01
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.31
Consensus pattern (68 bp):
CTTTGGAGGCTATGAACTTAAATTGTCAAACTTTTATGACATCAGCTGGGAGCGTAGGTCCGCTA
GCT
Found at i:26740429 original size:137 final size:136
Alignment explanation
Indices: 26739945--26740439 Score: 498
Period size: 137 Copynumber: 3.6 Consensus size: 136
26739935 AGCTGCAAGT
* * * * ** * *
26739945 TTAACTCTACAAGCTCTTATAATG-TACCCGGTAGCATA-GTTTACTAACTGCTTTGGAGGCTAC
1 TTAACTCTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCCACTAGCTACTTTGGAGGCTAC
* * * * * *
26740008 GAA-CTTAAATTGTCAAACCTTTCTGACATCAGCTAGGAGCGTAGGTCC-GCTAGCTGTGTCGGA
66 -AATTTTAAATCGTCAAACCTTTATGACATCAG-TTGGAGCGTAGG-CCTTCTAGCTGTGTCAGA
**
26740071 GCTGTGAGC
128 GCTACGAGC
* * * * * *
26740080 TTAACTTTGCAAGCTCTTATAATGTCAGCTGGGAACGTAGGTCCGCTAGCTACTTTGGAGGCTAT
1 TTAACTCTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCCACTAGCTACTTTGGAGGCTAC
* * * * * *
26740145 GATTTTAAATTGTCAAACTTTTATGACATCAGCTGGGAGCATAGG--TTCGCTAGTTGTGTCAGA
66 AATTTTAAATCGTCAAACCTTTATGACATCAG-TTGGAGCGTAGGCCTT--CTAGCTGTGTCAGA
26740208 GCTACGAGC
128 GCTACGAGC
* * ** ** * *
26740217 TTAACTCTACGAGCTCTTACAATGTTATTTGGGAGCGTAGGTCTGCTAGCTACTTTAGAAGCTAC
1 TTAACTCTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCCACTAGCTACTTTGGAGGCTAC
* *
26740282 AATATTAAATCGTCAAACCTTTATGACATCAGTTGGAAGCGTAGGCCTTCTAGCTGTGTCAAAGC
66 AATTTTAAATCGTCAAACCTTTATGACATCAGTTGG-AGCGTAGGCCTTCTAGCTGTGTCAGAGC
26740347 TACGAGC
130 TACGAGC
* * *
26740354 TTAACTTTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCCACTAGTTGCTTTGGAGGCTAC
1 TTAACTCTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCCACTAGCTACTTTGGAGGCTAC
**
26740419 AATTTTAAATCCACAAACCTT
66 AATTTTAAATCGTCAAACCTT
26740440 CAAACTATAC
Statistics
Matches: 292, Mismatches: 59, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
135 22 0.08
136 12 0.04
137 256 0.88
139 2 0.01
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (136 bp):
TTAACTCTACAAGCTCTTATAATGTTAGCTGGGAGCGTAGGTCCACTAGCTACTTTGGAGGCTAC
AATTTTAAATCGTCAAACCTTTATGACATCAGTTGGAGCGTAGGCCTTCTAGCTGTGTCAGAGCT
ACGAGC
Found at i:26752234 original size:31 final size:30
Alignment explanation
Indices: 26752165--26752234 Score: 88
Period size: 30 Copynumber: 2.3 Consensus size: 30
26752155 AAATAATTAG
* *
26752165 ACTCTTTTTAAAAGGTTAATGTCAAATTTG
1 ACTCTTTTTAAAAGGTTAATGCCAAATTTA
26752195 ACTCTTTTTAAAAGG-TAGATGGCCAAATTTA
1 ACTCTTTTTAAAAGGTTA-AT-GCCAAATTTA
*
26752226 ACTTTTTTT
1 ACTCTTTTT
26752235 TAAATGATCA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
29 2 0.06
30 17 0.49
31 16 0.46
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.44
Consensus pattern (30 bp):
ACTCTTTTTAAAAGGTTAATGCCAAATTTA
Found at i:26753943 original size:20 final size:20
Alignment explanation
Indices: 26753909--26753959 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
26753899 TAGTTAACTA
26753909 AAATTTATA-ATAAATATAT
1 AAATTTATATATAAATATAT
*
26753928 ATATTTATATATAAATATAT
1 AAATTTATATATAAATATAT
26753948 AAATTTAT-TATA
1 AAATTTATATATA
26753960 TTTGTACTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 12 0.41
20 17 0.59
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (20 bp):
AAATTTATATATAAATATAT
Found at i:26760325 original size:11 final size:11
Alignment explanation
Indices: 26760309--26760334 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26760299 TATTTTTTTA
26760309 TTTTAAAATAT
1 TTTTAAAATAT
26760320 TTTTAAAATAT
1 TTTTAAAATAT
26760331 TTTT
1 TTTT
26760335 TTTATTTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:26762911 original size:35 final size:36
Alignment explanation
Indices: 26762837--26762930 Score: 138
Period size: 35 Copynumber: 2.6 Consensus size: 36
26762827 ATACAGTGGA
*
26762837 ATGCTTAACATGCGAATCAGAATCAGAAATAATGAC
1 ATGCTTAACATGCGAATCAAAATCAGAAATAATGAC
*
26762873 ATGCTTAACATGCGAGTCAAAATCAG-AATAAT-AGC
1 ATGCTTAACATGCGAATCAAAATCAGAAATAATGA-C
*
26762908 ATGCTTAACATGCGAATAAAAAT
1 ATGCTTAACATGCGAATCAAAAT
26762931 AATAAAATAT
Statistics
Matches: 53, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
34 1 0.02
35 28 0.53
36 24 0.45
ACGTcount: A:0.45, C:0.16, G:0.16, T:0.23
Consensus pattern (36 bp):
ATGCTTAACATGCGAATCAAAATCAGAAATAATGAC
Found at i:26763861 original size:25 final size:25
Alignment explanation
Indices: 26763828--26763883 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
26763818 CAATGCAGCA
26763828 GTGGTGCAACGACGCGACAGGGACG
1 GTGGTGCAACGACGCGACAGGGACG
26763853 GTGGTGCAACGACGCGACAGGGACG
1 GTGGTGCAACGACGCGACAGGGACG
26763878 GTGGTG
1 GTGGTG
26763884 TAGTGGCCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.21, C:0.21, G:0.46, T:0.11
Consensus pattern (25 bp):
GTGGTGCAACGACGCGACAGGGACG
Found at i:26765465 original size:317 final size:317
Alignment explanation
Indices: 26764890--26765501 Score: 1224
Period size: 317 Copynumber: 1.9 Consensus size: 317
26764880 ACTTATTAAA
26764890 TTAACTTATCTCTTGAACATTTTCCAATGACAATTCAAACAATTAATCAATCTTCATAAGCACAT
1 TTAACTTATCTCTTGAACATTTTCCAATGACAATTCAAACAATTAATCAATCTTCATAAGCACAT
26764955 AAAATATTAAGTGAGATAACAATGTATTCCTACATTAAAATAGTTTAATCACAATAATCTTACAA
66 AAAATATTAAGTGAGATAACAATGTATTCCTACATTAAAATAGTTTAATCACAATAATCTTACAA
26765020 GTTATGCAAGGCTAATGTACCATCTATACCGTCGGTAATTTAACCCTCAGCTACCTTAGAAGATT
131 GTTATGCAAGGCTAATGTACCATCTATACCGTCGGTAATTTAACCCTCAGCTACCTTAGAAGATT
26765085 AAACATACACTGATTAAGTATTGTGCCAATTAATTGCAATTTCAACATGATTAAATAATTAATTC
196 AAACATACACTGATTAAGTATTGTGCCAATTAATTGCAATTTCAACATGATTAAATAATTAATTC
26765150 ATTAGTTACCTTACAATTATAATGCAAGAATAACTAATGAATAACTTAATTCATTAG
261 ATTAGTTACCTTACAATTATAATGCAAGAATAACTAATGAATAACTTAATTCATTAG
26765207 TTAACTTATCTCTTGAACATTTTCCAATGACAATTCAAACAATTAATCAATCTTCATAAGCACAT
1 TTAACTTATCTCTTGAACATTTTCCAATGACAATTCAAACAATTAATCAATCTTCATAAGCACAT
26765272 AAAATATTAAGTGAGATAACAATGTATTCCTACATTAAAATAGTTTAATCACAATAATCTTACAA
66 AAAATATTAAGTGAGATAACAATGTATTCCTACATTAAAATAGTTTAATCACAATAATCTTACAA
26765337 GTTATGCAAGGCTAATGTACCATCTATACCGTCGGTAATTTAACCCTCAGCTACCTTAGAAGATT
131 GTTATGCAAGGCTAATGTACCATCTATACCGTCGGTAATTTAACCCTCAGCTACCTTAGAAGATT
26765402 AAACATACACTGATTAAGTATTGTGCCAATTAATTGCAATTTCAACATGATTAAATAATTAATTC
196 AAACATACACTGATTAAGTATTGTGCCAATTAATTGCAATTTCAACATGATTAAATAATTAATTC
26765467 ATTAGTTACCTTACAATTATAATGCAAGAATAACT
261 ATTAGTTACCTTACAATTATAATGCAAGAATAACT
26765502 TAATCATGAT
Statistics
Matches: 295, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
317 295 1.00
ACGTcount: A:0.40, C:0.17, G:0.09, T:0.34
Consensus pattern (317 bp):
TTAACTTATCTCTTGAACATTTTCCAATGACAATTCAAACAATTAATCAATCTTCATAAGCACAT
AAAATATTAAGTGAGATAACAATGTATTCCTACATTAAAATAGTTTAATCACAATAATCTTACAA
GTTATGCAAGGCTAATGTACCATCTATACCGTCGGTAATTTAACCCTCAGCTACCTTAGAAGATT
AAACATACACTGATTAAGTATTGTGCCAATTAATTGCAATTTCAACATGATTAAATAATTAATTC
ATTAGTTACCTTACAATTATAATGCAAGAATAACTAATGAATAACTTAATTCATTAG
Found at i:26766326 original size:21 final size:22
Alignment explanation
Indices: 26766302--26766346 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
26766292 TATTTAACCC
*
26766302 AAAATAAATTGGATTAT-AATT
1 AAAATAAATTAGATTATAAATT
* *
26766323 AAAATTAATTATATTATAAATT
1 AAAATAAATTAGATTATAAATT
26766345 AA
1 AA
26766347 TATTCATAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (22 bp):
AAAATAAATTAGATTATAAATT
Found at i:26766333 original size:16 final size:16
Alignment explanation
Indices: 26766314--26766347 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
26766304 AATAAATTGG
26766314 ATTATAATTA-AAATTA
1 ATTAT-ATTATAAATTA
26766330 ATTATATTATAAATTA
1 ATTATATTATAAATTA
26766346 AT
1 AT
26766348 ATTCATAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTATATTATAAATTA
Found at i:26770296 original size:30 final size:30
Alignment explanation
Indices: 26770239--26770297 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
26770229 TGCCTTTGAA
* * *
26770239 AATATTTACAAAAAGTGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
26770269 AATATTTACAAAAAGAG-CAACCAAATTTT
1 AATATTTACAAAAAGAGAC-ACCAAATTTT
26770298 GAAAATAGTT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:26784846 original size:11 final size:11
Alignment explanation
Indices: 26784830--26784860 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
26784820 GAGATTAGAT
26784830 ACTGTAGCGAC
1 ACTGTAGCGAC
26784841 ACTGTAGCGAC
1 ACTGTAGCGAC
26784852 ACTGTAGCG
1 ACTGTAGCG
26784861 TGAGACAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (11 bp):
ACTGTAGCGAC
Found at i:26793015 original size:22 final size:22
Alignment explanation
Indices: 26792987--26793034 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
26792977 TTTATGTAAG
26792987 AAAACTTAAATAACATGAAACC
1 AAAACTTAAATAACATGAAACC
26793009 AAAACTTAAATAACATGAAACC
1 AAAACTTAAATAACATGAAACC
26793031 AAAA
1 AAAA
26793035 GCATTTAACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.62, C:0.17, G:0.04, T:0.17
Consensus pattern (22 bp):
AAAACTTAAATAACATGAAACC
Found at i:26794425 original size:101 final size:102
Alignment explanation
Indices: 26794310--26794493 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
26794300 AAAGTGACGG
*
26794310 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-CTGGAATGAT-A-GGTCGCATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GG-ATGATAATGGTCACATGTGTAG
26794372 TACTATGTGCAGGCTACTATGCGTACTGGATAGTTTTGA
64 TACTATGTGCAGGCTACTATGCGTACTGGATAGTTTTGA
*
26794411 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGATAATGGTCACATGTGTAGTA
* * *
26794476 CTGTTTGTAGGCTACTAT
66 CTATGTGCAGGCTACTAT
26794494 ATGAACCGAA
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
100 4 0.05
101 40 0.53
102 31 0.41
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACTGGATAGTTTTGA
Found at i:26794440 original size:51 final size:50
Alignment explanation
Indices: 26794310--26794443 Score: 180
Period size: 50 Copynumber: 2.7 Consensus size: 50
26794300 AAAGTGACGG
* *
26794310 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACTGGAATGATAGA
* * * * *
26794360 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACTGG-ATAGTTTTGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACTGGAAT-G-ATAGA
26794411 TCACGTGTGTAGTACTATGTGCAGGCTACTACG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACG
26794444 TGTATCGGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
49 2 0.03
50 38 0.53
51 32 0.44
ACGTcount: A:0.22, C:0.17, G:0.28, T:0.32
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTACTGGAATGATAGA
Found at i:26794471 original size:51 final size:50
Alignment explanation
Indices: 26794308--26794492 Score: 212
Period size: 51 Copynumber: 3.7 Consensus size: 50
26794298 TGAAAGTGAC
* *
26794308 GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAATGATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGG-ATGGTAT
* * * * *
26794358 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACTGGATAGTTTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAT-GGTAT
* *
26794409 GATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-TCGGATGGTAAT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACT-GGATGGT-AT
* * *
26794460 GGTCACATGTGTAGTACTGTTTGTAGGCTACTA
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTA
26794493 TATGAACCGA
Statistics
Matches: 113, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
49 2 0.02
50 44 0.39
51 67 0.59
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATGGTAT
Found at i:26794554 original size:45 final size:45
Alignment explanation
Indices: 26794503--26794590 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
26794493 TATGAACCGA
* * * *
26794503 ACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCAG
1 ACATCATTGATTAATAAGATGGTTGCTATATGCTGAATCCACCAG
26794548 ACATCATTGATTAATAAGATGGTTGCTATATGCTGAATCCACC
1 ACATCATTGATTAATAAGATGGTTGCTATATGCTGAATCCACC
26794591 GAGTATTTGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (45 bp):
ACATCATTGATTAATAAGATGGTTGCTATATGCTGAATCCACCAG
Found at i:26796512 original size:6 final size:6
Alignment explanation
Indices: 26796501--26796525 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
26796491 AACCTAAAGG
26796501 AAACTA AAACTA AAACTA AAACTA A
1 AAACTA AAACTA AAACTA AAACTA A
26796526 GCTAAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
AAACTA
Found at i:26798102 original size:18 final size:18
Alignment explanation
Indices: 26798061--26798107 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
26798051 AAAAATGTAT
*
26798061 AAAAACTAAA-ATAAACAC
1 AAAAA-TAAACATAAAAAC
*
26798079 ACAAATAAACATAAAAAC
1 AAAAATAAACATAAAAAC
26798097 AAAAATAAACA
1 AAAAATAAACA
26798108 CACATAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 4 0.16
18 21 0.84
ACGTcount: A:0.74, C:0.15, G:0.00, T:0.11
Consensus pattern (18 bp):
AAAAATAAACATAAAAAC
Found at i:26809637 original size:15 final size:15
Alignment explanation
Indices: 26809617--26809647 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26809607 ATTTTCAAAC
26809617 TGGACCAAGGTATCG
1 TGGACCAAGGTATCG
26809632 TGGACCAAGGTATCG
1 TGGACCAAGGTATCG
26809647 T
1 T
26809648 TACTTTACCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.19, G:0.32, T:0.23
Consensus pattern (15 bp):
TGGACCAAGGTATCG
Found at i:26818628 original size:20 final size:20
Alignment explanation
Indices: 26818605--26818645 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
26818595 ATAAATTTTA
26818605 TAAATAAAAATTAAAAATAT
1 TAAATAAAAATTAAAAATAT
***
26818625 TAAATAAGTGTTAAAAATAT
1 TAAATAAAAATTAAAAATAT
26818645 T
1 T
26818646 TTTATAAAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
TAAATAAAAATTAAAAATAT
Found at i:26823346 original size:11 final size:11
Alignment explanation
Indices: 26823305--26823345 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
26823295 TTGTAGATTC
26823305 AAAAAAATCGA
1 AAAAAAATCGA
26823316 AAAAAAATCGA
1 AAAAAAATCGA
*
26823327 AAAAAAATTGA
1 AAAAAAATCGA
26823338 AAAAAAAT
1 AAAAAAAT
26823346 TTTGAAAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.76, C:0.05, G:0.07, T:0.12
Consensus pattern (11 bp):
AAAAAAATCGA
Found at i:26837654 original size:39 final size:38
Alignment explanation
Indices: 26837611--26837684 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 38
26837601 TTAAAATCAA
26837611 GCATTAGCGGCGCTTTTTGAAAAA-CGCCGCTAAAAATAT
1 GCATTAGCGGCG-TTTTTGAAAAAGCGCCGC-AAAAATAT
* *
26837650 GCATTAGTGGCGTTTTTTAAAAAGCGCCGCAAAAA
1 GCATTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAA
26837685 GCCTAAGCCC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
38 15 0.47
39 17 0.53
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (38 bp):
GCATTAGCGGCGTTTTTGAAAAAGCGCCGCAAAAATAT
Found at i:26837794 original size:41 final size:41
Alignment explanation
Indices: 26837725--26837962 Score: 300
Period size: 41 Copynumber: 5.8 Consensus size: 41
26837715 TTTGGGGGCA
* ** **
26837725 TTTAGCGGCGTTTTTTAAAAAGTTCCGCTAATGCTCGATAC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGAGCC
* * * *
26837766 TTTAGCAGCGTTTTTGAGAAAGCGCCGCTAATGCTCGGGCA
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGAGCC
* *
26837807 TTTAGCGGCGTTTTTGAGAAAGTGCCGCTAATGCTCGAGCC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGAGCC
* *
26837848 TTTAGCGACGTTTTTGAAAAAGCGCCGCTAATGCTCGGGCC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGAGCC
*
26837889 TTTAGCGGCGTTTTTGAAAAAGCGCCACTAATGCTCG-GACC
1 TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGAG-CC
*
26837930 TTTAGCGGCGTTTGTTTCAAAAA-CGCCGCTAAT
1 TTTAGCGGCG-TT-TTTGAAAAAGCGCCGCTAAT
26837963 AATAATAAAA
Statistics
Matches: 173, Mismatches: 21, Indels: 5
0.87 0.11 0.03
Matches are distributed among these distances:
40 1 0.01
41 153 0.88
42 11 0.06
43 8 0.05
ACGTcount: A:0.23, C:0.22, G:0.25, T:0.30
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCGAGCC
Found at i:26838113 original size:15 final size:15
Alignment explanation
Indices: 26838077--26838109 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
26838067 TTGTTAAAAG
*
26838077 TTTAGAGATTATGGA
1 TTTAGGGATTATGGA
26838092 TTTAGGGATTATGG-
1 TTTAGGGATTATGGA
26838106 TTTA
1 TTTA
26838110 AGGGTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.45
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:26838398 original size:15 final size:15
Alignment explanation
Indices: 26838343--26838403 Score: 63
Period size: 15 Copynumber: 4.1 Consensus size: 15
26838333 GAGTTCATAT
26838343 TTTAAGGTTTAGGGA
1 TTTAAGGTTTAGGGA
* *
26838358 -ATATGGATTTAGGGA
1 TTTAAGG-TTTAGGGA
* *
26838373 -TTATGGATTAGGGA
1 TTTAAGGTTTAGGGA
26838387 TTTAAGGTTTAGGGA
1 TTTAAGGTTTAGGGA
26838402 TT
1 TT
26838404 CAGGGGTCGG
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
14 11 0.29
15 27 0.71
ACGTcount: A:0.28, C:0.00, G:0.33, T:0.39
Consensus pattern (15 bp):
TTTAAGGTTTAGGGA
Found at i:26838402 original size:22 final size:22
Alignment explanation
Indices: 26838343--26838408 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
26838333 GAGTTCATAT
* *
26838343 TTTAAGGTTTAGGGAATATGGA
1 TTTAAGGTTTAGGGATTAGGGA
* * *
26838365 TTTAGGGATTATGGATTAGGGA
1 TTTAAGGTTTAGGGATTAGGGA
26838387 TTTAAGGTTTAGGGATTCAGGG
1 TTTAAGGTTTAGGGATT-AGGG
26838409 GTCGGGTTAG
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
22 31 0.89
23 4 0.11
ACGTcount: A:0.27, C:0.02, G:0.35, T:0.36
Consensus pattern (22 bp):
TTTAAGGTTTAGGGATTAGGGA
Found at i:26843368 original size:336 final size:336
Alignment explanation
Indices: 26842683--26843383 Score: 1165
Period size: 336 Copynumber: 2.1 Consensus size: 336
26842673 GGGGTATTAC
*
26842683 ACACGATTTTTAACTTATCATTTTCTCTAGATTAATAGAACGGCGCCGTTTCTGTTAATTTTTAA
1 ACACGATTTTTAACTTATCATTTTCTCTAGATTAATAGAACGACGCCGTTTCTGTTAATTTTTAA
26842748 TGGCGTTTTACATGATTCGCCGCAAATGTGACTTAAAAAATTGGCTAAACGTTGCCGTTTGACTT
66 TGGCGTTTTACATGATTCGCCGCAAATGTGACTTAAAAAATTGGCTAAACGTTGCCGTTTGACTT
*
26842813 AAGCAAATTTATTTTTAGTGGCATTTTTCTGGAAAACGCCAGAACTGTGCATGAAAGATTAATTA
131 AAGCAAATTTATTTTTAGTGGCATTTTTCTGGAAAACGCCAGAACTGCGCATGAAAGATTAATTA
* *
26842878 AACGGCGCCATTTCTGATTATAACTTTAATTTTTAGTGGCGTTTTTTTGAAAACGCCGCAAATGT
196 AACGGCACCATTTCTGATTATAACTTTAATTTTTAGTGGCGCTTTTTTGAAAACGCCGCAAATGT
* *
26842943 ATAAGCAATAGTGGCGTTTTTGCAGAAAACGCCGCCAGAGTGTCTTAACATATTGGCTGGACGAC
261 ATAAGCAATAGCGGCGTTTTTGCAGAAAACGCCGCAAGAGTGTCTTAACATATTGGCTGGACGAC
26843008 ACCATTTCTGT
326 ACCATTTCTGT
* *
26843019 ACACGATTTTTAACTTATCATTTTCTCTAGATTAATAGAACGACGTCGTTTCTGTTAATTTTTAG
1 ACACGATTTTTAACTTATCATTTTCTCTAGATTAATAGAACGACGCCGTTTCTGTTAATTTTTAA
*
26843084 TGGCGTTTTACATGATTCGCCGCAAATGTGACTTAGAAAATTGGCTAAACGTTGCCGTTTGACTT
66 TGGCGTTTTACATGATTCGCCGCAAATGTGACTTAAAAAATTGGCTAAACGTTGCCGTTTGACTT
* *
26843149 AAGCAAATTTATTTTTAGTGGCGTTTTTGC-GGAAAATG-CAGAACTGCGCATGAAAGATTAATT
131 AAGCAAATTTATTTTTAGTGGCATTTTT-CTGGAAAACGCCAGAACTGCGCATGAAAGATTAATT
** * *
26843212 AAACGGCACTGTTTCTGATTATAACTTTAGTTTTTAGTGGCGCTTTTTTGGAAACGCCGCAAATG
195 AAACGGCACCATTTCTGATTATAACTTTAATTTTTAGTGGCGCTTTTTTGAAAACGCCGCAAATG
*
26843277 TATAAGCAATAGCGGCGTTTTTGTAGAAAACGCCGCAAGAGTGTCTTAACATATTGGCTGGACGA
260 TATAAGCAATAGCGGCGTTTTTGCAGAAAACGCCGCAAGAGTGTCTTAACATATTGGCTGGACGA
** *
26843342 CGTCGTTTCTGT
325 CACCATTTCTGT
* *
26843354 CCATCG-TGTTTTAACTTCTCATTTTCTCTA
1 ACA-CGAT-TTTTAACTTATCATTTTCTCTA
26843384 TATCTCAGAC
Statistics
Matches: 341, Mismatches: 21, Indels: 6
0.93 0.06 0.02
Matches are distributed among these distances:
335 157 0.46
336 183 0.54
337 1 0.00
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (336 bp):
ACACGATTTTTAACTTATCATTTTCTCTAGATTAATAGAACGACGCCGTTTCTGTTAATTTTTAA
TGGCGTTTTACATGATTCGCCGCAAATGTGACTTAAAAAATTGGCTAAACGTTGCCGTTTGACTT
AAGCAAATTTATTTTTAGTGGCATTTTTCTGGAAAACGCCAGAACTGCGCATGAAAGATTAATTA
AACGGCACCATTTCTGATTATAACTTTAATTTTTAGTGGCGCTTTTTTGAAAACGCCGCAAATGT
ATAAGCAATAGCGGCGTTTTTGCAGAAAACGCCGCAAGAGTGTCTTAACATATTGGCTGGACGAC
ACCATTTCTGT
Found at i:26843445 original size:16 final size:17
Alignment explanation
Indices: 26843421--26843462 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
26843411 ACAGAAAGAC
* *
26843421 AAAATGAAAGGGGAAA-
1 AAAAAGAAAGAGGAAAT
*
26843437 AAAAGGAAAGAGGAAAT
1 AAAAAGAAAGAGGAAAT
26843454 AAAAAGAAA
1 AAAAAGAAA
26843463 AAAAGGGAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
16 14 0.64
17 8 0.36
ACGTcount: A:0.69, C:0.00, G:0.26, T:0.05
Consensus pattern (17 bp):
AAAAAGAAAGAGGAAAT
Found at i:26844731 original size:18 final size:17
Alignment explanation
Indices: 26844702--26844754 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
26844692 TTACATTACT
*
26844702 TACATTACTTACTAAAA
1 TACAGTACTTACTAAAA
* *
26844719 TATAGTACATTACTTAAA
1 TACAGTAC-TTACTAAAA
*
26844737 TACATTACTTACTAAAA
1 TACAGTACTTACTAAAA
26844754 T
1 T
26844755 TTACTTAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
17 15 0.52
18 14 0.48
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (17 bp):
TACAGTACTTACTAAAA
Found at i:26844742 original size:13 final size:13
Alignment explanation
Indices: 26844724--26844787 Score: 69
Period size: 13 Copynumber: 4.8 Consensus size: 13
26844714 TAAAATATAG
26844724 TACATTACTTAAA
1 TACATTACTTAAA
26844737 TACATTACTTACTAA
1 TACATTACTTA--AA
26844752 -A-ATTTACTTAAA
1 TACA-TTACTTAAA
*
26844764 TATATTACTTAAA
1 TACATTACTTAAA
*
26844777 TACATGACTTA
1 TACATTACTTA
26844788 CTAAAATTTA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
12 2 0.05
13 31 0.70
14 9 0.20
15 2 0.05
ACGTcount: A:0.44, C:0.14, G:0.02, T:0.41
Consensus pattern (13 bp):
TACATTACTTAAA
Found at i:26844862 original size:22 final size:22
Alignment explanation
Indices: 26844810--26844894 Score: 67
Period size: 22 Copynumber: 4.1 Consensus size: 22
26844800 TATATATTAC
*
26844810 ATTACTTACATTACTTACTAAAAT
1 ATTACTTACATTACTTA--AATAT
26844834 A-TA-TTACATTACTTAAATAT
1 ATTACTTACATTACTTAAATAT
*
26844854 ATTACTTAC--TA---AAATTT
1 ATTACTTACATTACTTAAATAT
* *
26844871 ATAACTTACATTAATTAAATAT
1 ATTACTTACATTACTTAAATAT
26844893 AT
1 AT
26844895 ATTTTTAAGT
Statistics
Matches: 50, Mismatches: 4, Indels: 16
0.71 0.06 0.23
Matches are distributed among these distances:
17 13 0.26
19 2 0.04
20 7 0.14
21 2 0.04
22 23 0.46
23 2 0.04
24 1 0.02
ACGTcount: A:0.45, C:0.12, G:0.00, T:0.44
Consensus pattern (22 bp):
ATTACTTACATTACTTAAATAT
Found at i:26844867 original size:74 final size:73
Alignment explanation
Indices: 26844702--26845097 Score: 293
Period size: 74 Copynumber: 5.4 Consensus size: 73
26844692 TTACATTACT
* *
26844702 TACATTACTTACTAAAA--TATAGTACATTACTTAAATACATTACTTACTAAAATTTACTTAA-A
1 TACATTACTTACTAAAATTTATA-TATATTACTTAAATACATTACTTACTAAAA--TA--TAACT
*
26844764 TATATTACTTAAA
61 TACATTACTTAAA
* **
26844777 TACATGACTTACTAAAATTTAAGTATATATTACATTACTTACATTACTTACTAAAATAT-A-TTA
1 TACATTACTTACTAAAATTT-A-TATATATTAC-TTAAATACATTACTTACTAAAATATAACTTA
26844840 CATTACTTAAA
63 CATTACTTAAA
* * * * * * *
26844851 TATATTACTTACTAAAATTTATAACTTACATTAATTAAATATA-TA-TT-TTTAAGTATATA-TT
1 TACATTACTTACTAAAATTTAT-A--TATATTACTTAAATACATTACTTACTAAAATATA-ACTT
26844912 ACATTAC-T---
62 ACATTACTTAAA
* * * *
26844920 TACATTACTTACTAAAA--TATAGTATATTACTTAAATACATGACTTACTAAAATTTAAGTATAT
1 TACATTACTTACTAAAATTTATA-TATATTACTTAAATACATTACTTACTAAAATATAACT-TAC
**
26844983 ATTACATTACT
64 ATTAC-TTAAA
* * *
26844994 TACATTACTTACTAAAATATAT-TACATTACTTAAATATATTACTTACTAAAATTTATAACTTAC
1 TACATTACTTACTAAAATTTATATATATTACTTAAATACATTACTTACTAAAA--TATAACTTAC
*
26845058 ATGACTTAAA
64 ATTACTTAAA
*
26845068 TATATTACATTACTTAAAATTTATATATAT
1 TACATTAC-TTAC-TAAAATTTATATATAT
26845098 ATTTAAAATT
Statistics
Matches: 255, Mismatches: 39, Indels: 52
0.74 0.11 0.15
Matches are distributed among these distances:
65 14 0.05
66 2 0.01
67 6 0.02
68 7 0.03
69 23 0.09
71 7 0.03
72 4 0.02
73 14 0.05
74 91 0.36
75 33 0.13
76 17 0.07
77 7 0.03
78 8 0.03
79 22 0.09
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (73 bp):
TACATTACTTACTAAAATTTATATATATTACTTAAATACATTACTTACTAAAATATAACTTACAT
TACTTAAA
Found at i:26844877 original size:17 final size:17
Alignment explanation
Indices: 26844819--26845057 Score: 116
Period size: 17 Copynumber: 13.5 Consensus size: 17
26844809 CATTACTTAC
26844819 ATTACTTACTAAAATAT
1 ATTACTTACTAAAATAT
*
26844836 ATTACATTACTTAAATAT
1 ATTAC-TTACTAAAATAT
*
26844854 ATTACTTACTAAAATTT
1 ATTACTTACTAAAATAT
*
26844871 ATAACTTACATTAATTAA-AT
1 ATTACTTAC--TAA--AATAT
** *
26844891 ATATA-TTTTTAAGTATAT
1 AT-TACTTACTAA-AATAT
*
26844909 ATTACATTACT----TAC
1 ATTAC-TTACTAAAATAT
26844923 ATTACTTACTAAAATAT
1 ATTACTTACTAAAATAT
* *
26844940 AGTATA-TTACTTAAATAC
1 A-T-TACTTACTAAAATAT
*
26844958 ATGACTTACTAAAATTTAAGT
1 ATTACTTACTAAAA--T-A-T
* ** *
26844979 ATATA-TTACATTACTTAC
1 AT-TACTTAC-TAAAATAT
26844997 ATTACTTACTAAAATAT
1 ATTACTTACTAAAATAT
*
26845014 ATTACATTACTTAAATAT
1 ATTAC-TTACTAAAATAT
*
26845032 ATTACTTACTAAAATTT
1 ATTACTTACTAAAATAT
*
26845049 ATAACTTAC
1 ATTACTTAC
26845058 ATGACTTAAA
Statistics
Matches: 166, Mismatches: 32, Indels: 48
0.67 0.13 0.20
Matches are distributed among these distances:
13 5 0.03
14 7 0.04
16 1 0.01
17 67 0.40
18 57 0.34
19 10 0.06
20 7 0.04
21 9 0.05
22 3 0.02
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.43
Consensus pattern (17 bp):
ATTACTTACTAAAATAT
Found at i:26844904 original size:104 final size:104
Alignment explanation
Indices: 26844794--26845097 Score: 344
Period size: 104 Copynumber: 2.8 Consensus size: 104
26844784 CTTACTAAAA
26844794 TTTAAGTATATATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTAC
1 TTTAAGTATATATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTAC
*
26844859 TTACTAAAATTTATA-A-CTTACATTAATTAAATATATATT
66 TTACTAAAATTTATATATATTACATTAATTAAAT-TA-ATT
* * * *
26844898 TTTAAGTATATATTACATTACTTACATTACTTACTAAAATATAGTATATTACTTAAATACATGAC
1 TTTAAGTATATATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTAC
* * *
26844963 TTACTAAAATTTAAGTATATATTACATTACTTACATTACTT
66 TTACTAAAATTT-A-TATATATTACATTAATTAAATTAATT
** * * *
26845004 ACTAA-AATATATTACATTACTTAAATATATTACTTACTAAAATTTATAACTTACATGACTTAAA
1 TTTAAGTATATATTACATTAC-T---TACATTACTTACTAAAA--TAT-A-TTACATTACTTAAA
26845068 TATATTACATTACTTAAAATTTATATATAT
58 TATATTAC-TTAC-TAAAATTTATATATAT
26845098 ATTTAAAATT
Statistics
Matches: 169, Mismatches: 17, Indels: 19
0.82 0.08 0.09
Matches are distributed among these distances:
104 73 0.43
105 15 0.09
106 8 0.05
107 3 0.02
108 13 0.08
109 16 0.09
111 3 0.02
112 1 0.01
113 24 0.14
114 5 0.03
115 8 0.05
ACGTcount: A:0.43, C:0.11, G:0.02, T:0.44
Consensus pattern (104 bp):
TTTAAGTATATATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTAC
TTACTAAAATTTATATATATTACATTAATTAAATTAATT
Found at i:26844959 original size:178 final size:181
Alignment explanation
Indices: 26844737--26845072 Score: 606
Period size: 178 Copynumber: 1.9 Consensus size: 181
26844727 ATTACTTAAA
26844737 TACATTACTTACTAAAATTTACTTAAATATATTACTTAAATACATGACTTACTAAAATTTAAGTA
1 TACATTACTTACTAAAA-TTAC-TAAATATATTACTTAAATACATGACTTACTAAAATTTAAGTA
26844802 TATATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTACTTACTAAA
64 TATATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTACTTACTAAA
*
26844867 ATTTATAACTTACATTAATTAAATATATATTTTTAAGTATATATTACATTACT
129 ATTTATAACTTACATGAATTAAATATATATTTTTAAGTATATATTACATTACT
*
26844920 TACATTACTTACTAAAA-TA-T-AGTATATTACTTAAATACATGACTTACTAAAATTTAAGTATA
1 TACATTACTTACTAAAATTACTAAATATATTACTTAAATACATGACTTACTAAAATTTAAGTATA
26844982 TATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTACTTACTAAAAT
66 TATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTACTTACTAAAAT
*
26845047 TTATAACTTACATGACTTAAATATAT
131 TTATAACTTACATGAATTAAATATAT
26845073 TACATTACTT
Statistics
Matches: 150, Mismatches: 3, Indels: 5
0.95 0.02 0.03
Matches are distributed among these distances:
178 130 0.87
179 1 0.01
181 2 0.01
183 17 0.11
ACGTcount: A:0.43, C:0.12, G:0.02, T:0.43
Consensus pattern (181 bp):
TACATTACTTACTAAAATTACTAAATATATTACTTAAATACATGACTTACTAAAATTTAAGTATA
TATTACATTACTTACATTACTTACTAAAATATATTACATTACTTAAATATATTACTTACTAAAAT
TTATAACTTACATGAATTAAATATATATTTTTAAGTATATATTACATTACT
Found at i:26845037 original size:31 final size:31
Alignment explanation
Indices: 26844979--26845037 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
26844969 AAATTTAAGT
*
26844979 ATATATTACATTACTTACATTACTTACTAAA
1 ATATATTACATTACTTAAATTACTTACTAAA
26845010 ATATATTACATTACTTAAATATA-TTACT
1 ATATATTACATTACTTAAAT-TACTTACT
26845038 TACTAAAATT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
31 24 0.92
32 2 0.08
ACGTcount: A:0.42, C:0.14, G:0.00, T:0.44
Consensus pattern (31 bp):
ATATATTACATTACTTAAATTACTTACTAAA
Found at i:26845058 original size:39 final size:37
Alignment explanation
Indices: 26844920--26845088 Score: 159
Period size: 39 Copynumber: 4.5 Consensus size: 37
26844910 TTACATTACT
* *
26844920 TACATTACTTACTAAAA-TAT-AGTATATTACTTAAA
1 TACATTACTTACTAAAATTATAATTACATTACTTAAA
* * **
26844955 TACATGACTTACTAAAATT-TAAGTATATATTACATTACT
1 TACATTACTTACTAAAATTATAA-T-TACATTAC-TTAAA
26844994 TACATTACTTACTAAAA-TAT-ATTACATTACTTAAA
1 TACATTACTTACTAAAATTATAATTACATTACTTAAA
* *
26845029 TATATTACTTACTAAAATTTATAACTTACATGACTTAAA
1 TACATTACTTACTAAAA-TTATAA-TTACATTACTTAAA
*
26845068 TATATTACATTACTTAAAATT
1 TACATTAC-TTAC-TAAAATT
26845089 TATATATATA
Statistics
Matches: 112, Mismatches: 10, Indels: 19
0.79 0.07 0.13
Matches are distributed among these distances:
35 36 0.32
36 9 0.08
37 4 0.04
38 11 0.10
39 41 0.37
40 6 0.05
41 5 0.04
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.41
Consensus pattern (37 bp):
TACATTACTTACTAAAATTATAATTACATTACTTAAA
Found at i:26845182 original size:12 final size:12
Alignment explanation
Indices: 26845165--26845193 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
26845155 AATAAATTTT
26845165 ATAATTTTAAAA
1 ATAATTTTAAAA
26845177 ATAATTTTAAAA
1 ATAATTTTAAAA
26845189 ATAAT
1 ATAAT
26845194 AACTTACATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
ATAATTTTAAAA
Found at i:26845217 original size:9 final size:9
Alignment explanation
Indices: 26845192--26845477 Score: 165
Period size: 9 Copynumber: 34.7 Consensus size: 9
26845182 TTTAAAAATA
26845192 ATAACTTAC
1 ATAACTTAC
26845201 ATAA--TAC
1 ATAACTTAC
*
26845208 ACAACTTAC
1 ATAACTTAC
*
26845217 ATAACTTAA
1 ATAACTTAC
26845226 ATAACTTAC
1 ATAACTTAC
26845235 ATAA--TAC
1 ATAACTTAC
**
26845242 ATAACTTTG
1 ATAACTTAC
*
26845251 ATAACTAAC
1 ATAACTTAC
*
26845260 ATTA--TAC
1 ATAACTTAC
*
26845267 ACAACTTAC
1 ATAACTTAC
26845276 ATAA--TAC
1 ATAACTTAC
***
26845283 ATTTTTTAC
1 ATAACTTAC
26845292 ATAACTTAC
1 ATAACTTAC
26845301 ATAA--TAC
1 ATAACTTAC
*
26845308 ACAACTTAC
1 ATAACTTAC
*
26845317 ----CTTAA
1 ATAACTTAC
26845322 ATAACTTAC
1 ATAACTTAC
26845331 ATAA--TAC
1 ATAACTTAC
**
26845338 ATAACTTTG
1 ATAACTTAC
*
26845347 ATAACTAAC
1 ATAACTTAC
*
26845356 ATTA--TAC
1 ATAACTTAC
*
26845363 ACAACTTAC
1 ATAACTTAC
26845372 ATAA--TAC
1 ATAACTTAC
**
26845379 ATTTCTTAC
1 ATAACTTAC
26845388 ATAACTTAC
1 ATAACTTAC
26845397 ATAA--TAC
1 ATAACTTAC
*
26845404 ACAACTTAC
1 ATAACTTAC
*
26845413 ATAACTTAA
1 ATAACTTAC
26845422 ATAACTTAC
1 ATAACTTAC
26845431 ATAA--TAC
1 ATAACTTAC
**
26845438 ATTTCTTAC
1 ATAACTTAC
26845447 ATAACTTAC
1 ATAACTTAC
*
26845456 ATTA--TAC
1 ATAACTTAC
*
26845463 ACAACTTAC
1 ATAACTTAC
26845472 ATAACT
1 ATAACT
26845478 CATTTATAGG
Statistics
Matches: 203, Mismatches: 48, Indels: 52
0.67 0.16 0.17
Matches are distributed among these distances:
5 4 0.02
7 60 0.30
9 139 0.68
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (9 bp):
ATAACTTAC
Found at i:26845222 original size:25 final size:25
Alignment explanation
Indices: 26845192--26845477 Score: 192
Period size: 25 Copynumber: 11.2 Consensus size: 25
26845182 TTTAAAAATA
*
26845192 ATAACTTACATAATACACAACTTAC
1 ATAACTTACATAATACATAACTTAC
*
26845217 ATAACTTAAATAACTTACATAA--TAC
1 ATAACTTACATAA--TACATAACTTAC
** *
26845242 ATAACTTTGATAACTAACATTA--TAC
1 ATAACTTACATAA-T-ACATAACTTAC
* ***
26845267 ACAACTTACATAATACATTTTTTAC
1 ATAACTTACATAATACATAACTTAC
*
26845292 ATAACTTACATAATACACAACTTACC
1 ATAACTTACATAATACATAACTTA-C
**
26845318 TTAAATAACTTACATAATACATAACTTTG
1 ----ATAACTTACATAATACATAACTTAC
* * *
26845347 ATAACTAACATTATACACAACTTAC
1 ATAACTTACATAATACATAACTTAC
**
26845372 ATAA--TACATTTCTTACATAACTTAC
1 ATAACTTACA--TAATACATAACTTAC
* *
26845397 ATAA--TACACAACTTACATAACTTAA
1 ATAACTTACATAA--TACATAACTTAC
**
26845422 ATAACTTACATAATACATTTCTTAC
1 ATAACTTACATAATACATAACTTAC
* *
26845447 ATAACTTACATTATACACAACTTAC
1 ATAACTTACATAATACATAACTTAC
26845472 ATAACT
1 ATAACT
26845478 CATTTATAGG
Statistics
Matches: 206, Mismatches: 39, Indels: 32
0.74 0.14 0.12
Matches are distributed among these distances:
23 8 0.04
24 2 0.01
25 161 0.78
26 1 0.00
27 12 0.06
30 22 0.11
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (25 bp):
ATAACTTACATAATACATAACTTAC
Found at i:26845273 original size:41 final size:41
Alignment explanation
Indices: 26845228--26845316 Score: 117
Period size: 41 Copynumber: 2.2 Consensus size: 41
26845218 TAACTTAAAT
* *
26845228 AACTTACATAATACATAACTTT-GATAACTAACATTATACAC
1 AACTTACATAATACAT-ACTTTACATAACTAACATAATACAC
** *
26845269 AACTTACATAATACATTTTTTACATAACTTACATAATACAC
1 AACTTACATAATACATACTTTACATAACTAACATAATACAC
26845310 AACTTAC
1 AACTTAC
26845317 CTTAAATAAC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
40 3 0.07
41 39 0.93
ACGTcount: A:0.45, C:0.20, G:0.01, T:0.34
Consensus pattern (41 bp):
AACTTACATAATACATACTTTACATAACTAACATAATACAC
Found at i:26845308 original size:16 final size:16
Alignment explanation
Indices: 26845289--26845475 Score: 96
Period size: 16 Copynumber: 13.0 Consensus size: 16
26845279 ATACATTTTT
26845289 TACATAACTTACATAA
1 TACATAACTTACATAA
* *
26845305 TACACAACTTACCT--
1 TACATAACTTACATAA
*
26845319 TAAATAACTTACATAA
1 TACATAACTTACATAA
26845335 TACATAAC-T---T--
1 TACATAACTTACATAA
* * *
26845345 T-GATAACTAACATTA
1 TACATAACTTACATAA
*
26845360 TACACAACTTACATAA
1 TACATAACTTACATAA
26845376 TACAT---TT-C-T--
1 TACATAACTTACATAA
26845385 TACATAACTTACATAA
1 TACATAACTTACATAA
*
26845401 TACACAACTTACATAA
1 TACATAACTTACATAA
*
26845417 CTTAAATAACTTACATAA
1 --TACATAACTTACATAA
26845435 TACAT---TT-C-T--
1 TACATAACTTACATAA
*
26845444 TACATAACTTACATTA
1 TACATAACTTACATAA
*
26845460 TACACAACTTACATAA
1 TACATAACTTACATAA
26845476 CTCATTTATA
Statistics
Matches: 127, Mismatches: 19, Indels: 50
0.65 0.10 0.26
Matches are distributed among these distances:
9 15 0.12
10 1 0.01
11 2 0.02
12 7 0.06
13 7 0.06
14 13 0.10
15 2 0.02
16 66 0.52
18 14 0.11
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.33
Consensus pattern (16 bp):
TACATAACTTACATAA
Found at i:26845351 original size:96 final size:97
Alignment explanation
Indices: 26845192--26845475 Score: 453
Period size: 96 Copynumber: 2.9 Consensus size: 97
26845182 TTTAAAAATA
26845192 ATAACTTACATAATACACAACTTACATAACTTAAATAACTTACATAATACATAACTTTGATAACT
1 ATAACTTACATAATACACAACTTAC---ACTTAAATAACTTACATAATACATAACTTTGATAACT
*
26845257 AACATTATACACAACTTACATAATACATTTTTTAC
63 AACATTATACACAACTTACATAATACATTTCTTAC
26845292 ATAACTTACATAATACACAACTTAC-CTTAAATAACTTACATAATACATAACTTTGATAACTAAC
1 ATAACTTACATAATACACAACTTACACTTAAATAACTTACATAATACATAACTTTGATAACTAAC
26845356 ATTATACACAACTTACATAATACATTTCTTAC
66 ATTATACACAACTTACATAATACATTTCTTAC
** **
26845388 ATAACTTACATAATACACAACTTACATAACTTAAATAACTTACATAATACATTTCTTACATAACT
1 ATAACTTACATAATACACAACTTAC---ACTTAAATAACTTACATAATACATAACTTTGATAACT
*
26845453 TACATTATACACAACTTACATAA
63 AACATTATACACAACTTACATAA
26845476 CTCATTTATA
Statistics
Matches: 174, Mismatches: 6, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
96 95 0.55
100 79 0.45
ACGTcount: A:0.46, C:0.20, G:0.01, T:0.33
Consensus pattern (97 bp):
ATAACTTACATAATACACAACTTACACTTAAATAACTTACATAATACATAACTTTGATAACTAAC
ATTATACACAACTTACATAATACATTTCTTAC
Found at i:26845372 original size:41 final size:41
Alignment explanation
Indices: 26845324--26845477 Score: 150
Period size: 41 Copynumber: 3.7 Consensus size: 41
26845314 TACCTTAAAT
** *
26845324 AACTTACATAATACATAACTTTGATAACTAACATTATACAC
1 AACTTACATAATACATAACTTACATAACTAACATAATACAC
** *
26845365 AACTTACATAATACATTTCTTACATAACTTACATAATACAC
1 AACTTACATAATACATAACTTACATAACTAACATAATACAC
* ** *
26845406 AACTTACATAACTTAAATAACTTACATAA-T-ACATTTCTTACAT
1 AACTTACATAA--TACATAACTTACATAACTAACA--TAATACAC
* *
26845449 AACTTACATTATACACAACTTACATAACT
1 AACTTACATAATACATAACTTACATAACT
26845478 CATTTATAGG
Statistics
Matches: 93, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
41 63 0.68
42 2 0.02
43 28 0.30
ACGTcount: A:0.45, C:0.21, G:0.01, T:0.34
Consensus pattern (41 bp):
AACTTACATAATACATAACTTACATAACTAACATAATACAC
Found at i:26845428 original size:59 final size:59
Alignment explanation
Indices: 26845365--26845477 Score: 217
Period size: 59 Copynumber: 1.9 Consensus size: 59
26845355 CATTATACAC
26845365 AACTTACATAATACATTTCTTACATAACTTACATAATACACAACTTACATAACTTAAAT
1 AACTTACATAATACATTTCTTACATAACTTACATAATACACAACTTACATAACTTAAAT
*
26845424 AACTTACATAATACATTTCTTACATAACTTACATTATACACAACTTACATAACT
1 AACTTACATAATACATTTCTTACATAACTTACATAATACACAACTTACATAACT
26845478 CATTTATAGG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 53 1.00
ACGTcount: A:0.44, C:0.21, G:0.00, T:0.35
Consensus pattern (59 bp):
AACTTACATAATACATTTCTTACATAACTTACATAATACACAACTTACATAACTTAAAT
Found at i:26851023 original size:19 final size:19
Alignment explanation
Indices: 26850999--26851036 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
26850989 GTAAATATTT
*
26850999 TTATCATTTTGACTTTTAA
1 TTATCATTTTAACTTTTAA
26851018 TTATCATTTTAACTTTTAA
1 TTATCATTTTAACTTTTAA
26851037 CATTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.29, C:0.11, G:0.03, T:0.58
Consensus pattern (19 bp):
TTATCATTTTAACTTTTAA
Found at i:26851298 original size:43 final size:43
Alignment explanation
Indices: 26851228--26851477 Score: 331
Period size: 43 Copynumber: 5.8 Consensus size: 43
26851218 GCGTTTTTAA
* * * *
26851228 AAAAGCGTCGCTAAAGGTCAAT-GTCTTTAGCGGTGTTTGTAGG
1 AAAAGCGCCGCTAAAGGTC-GTGGTCTTTAGCGGCGTTTGTGGG
* * *
26851271 AGAAGCGCCGCTAAAGGTCGTGCTCTTTAGCGGTGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGG
* *
26851314 AGAAGCGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTTTGGG
1 AAAAGCGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGG
* * * *
26851357 AAAAGCGCCGCAAAAGCTCGTTGTCTTTAGCAGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGG
* * *
26851400 ACAAGCACCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGT
1 AAAAGCGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGG
*
26851443 AAAAGCGCCGCTAAAGGTCATGGTCTTTAGCGGCG
1 AAAAGCGCCGCTAAAGGTCGTGGTCTTTAGCGGCG
26851478 CTTTCCCAAA
Statistics
Matches: 182, Mismatches: 24, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
42 1 0.01
43 181 0.99
ACGTcount: A:0.21, C:0.19, G:0.33, T:0.27
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCGTGGTCTTTAGCGGCGTTTGTGGG
Found at i:26852441 original size:16 final size:16
Alignment explanation
Indices: 26852420--26852451 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26852410 GTTTTGTTGC
*
26852420 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
26852436 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
26852452 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:26855262 original size:19 final size:19
Alignment explanation
Indices: 26855224--26855262 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
26855214 ATTAAGTATT
**
26855224 AAATTAAATAAAATTTATA
1 AAATTAAATAAAATAAATA
*
26855243 AAATTAATTAAAATAAATA
1 AAATTAAATAAAATAAATA
26855262 A
1 A
26855263 TAAAAATGTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATTAAATAAAATAAATA
Found at i:26855842 original size:9 final size:9
Alignment explanation
Indices: 26855825--26855861 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
26855815 TCAGTTTTCG
26855825 AATTCGAAT
1 AATTCGAAT
*
26855834 AACTCGAAT
1 AATTCGAAT
26855843 AATTCGAAT
1 AATTCGAAT
26855852 AATTCGAAT
1 AATTCGAAT
26855861 A
1 A
26855862 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:26855938 original size:29 final size:30
Alignment explanation
Indices: 26855897--26855973 Score: 120
Period size: 30 Copynumber: 2.6 Consensus size: 30
26855887 ACCCCCAACT
* *
26855897 CCCAAACCTTTTTACT-TTTCCCACTTTCCC
1 CCCAAAAC-TTTTACTCCTTCCCACTTTCCC
26855927 CCCAAAACTTTTACTCCTTCCCACTTTCCC
1 CCCAAAACTTTTACTCCTTCCCACTTTCCC
26855957 CCCAAAACTTTTACTCC
1 CCCAAAACTTTTACTCC
26855974 CCTCCCCTCC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 7 0.16
30 37 0.84
ACGTcount: A:0.21, C:0.44, G:0.00, T:0.35
Consensus pattern (30 bp):
CCCAAAACTTTTACTCCTTCCCACTTTCCC
Found at i:26872594 original size:50 final size:50
Alignment explanation
Indices: 26872496--26872627 Score: 140
Period size: 50 Copynumber: 2.6 Consensus size: 50
26872486 TATTGAGGTT
* * * ** *
26872496 ATGAGAGGTC-CCATGTAAGACCATGTCTAGGACATGGCGTTTGTACCGAG
1 ATGAGAGGTCTCC-TGTAAGACCATGTCTGGGACATGACATGGGCACCGAG
* *
26872546 ATGAGAGGTCTCCCGTAAGACCATGTCTGGGACATGACATGGGCACCGAT
1 ATGAGAGGTCTCCTGTAAGACCATGTCTGGGACATGACATGGGCACCGAG
** * *
26872596 ATGAGAACTCTCATGTAAGACCATATCTGGGA
1 ATGAGAGGTCTCCTGTAAGACCATGTCTGGGA
26872628 TATGGCATTT
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 66 0.97
51 2 0.03
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
ATGAGAGGTCTCCTGTAAGACCATGTCTGGGACATGACATGGGCACCGAG
Found at i:26875406 original size:23 final size:24
Alignment explanation
Indices: 26875353--26875407 Score: 67
Period size: 25 Copynumber: 2.3 Consensus size: 24
26875343 AAAATTGTTA
*
26875353 AAATTAAGACATATTTAAAATGCTC
1 AAATTATGACATATTTAAAA-GCTC
* *
26875378 AGATTATGACATGTTTAAAA-CTC
1 AAATTATGACATATTTAAAAGCTC
26875401 AAATTAT
1 AAATTAT
26875408 TGATGTTCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 9 0.35
25 17 0.65
ACGTcount: A:0.45, C:0.11, G:0.09, T:0.35
Consensus pattern (24 bp):
AAATTATGACATATTTAAAAGCTC
Done.