Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 97 of 173
Found at i:30407792 original size:20 final size:21
Alignment explanation
Indices: 30407757--30407795 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
30407747 TGAGTTAGTT
30407757 TTGAAATGGAAAAGTATTGGA
1 TTGAAATGGAAAAGTATTGGA
*
30407778 TTGAAAT-GTAAAGTATTG
1 TTGAAATGGAAAAGTATTG
30407796 AATGGTATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.33
Consensus pattern (21 bp):
TTGAAATGGAAAAGTATTGGA
Found at i:30410705 original size:10 final size:10
Alignment explanation
Indices: 30410690--30410737 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
30410680 TAAAGTTTAA
30410690 TAATTAAAAT
1 TAATTAAAAT
*
30410700 TAATT-AAGT
1 TAATTAAAAT
*
30410709 TAATTAATTAT
1 TAATTAA-AAT
30410720 TAATTAAAAT
1 TAATTAAAAT
*
30410730 TAAATAAA
1 TAATTAAA
30410738 GTATAAAAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
9 8 0.26
10 15 0.48
11 8 0.26
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (10 bp):
TAATTAAAAT
Found at i:30437130 original size:27 final size:27
Alignment explanation
Indices: 30437090--30437141 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
30437080 AACTTCTTTT
* * * *
30437090 TTAGGGTGACCAAATTAATAAAAACAA
1 TTAGAGTGAACAAAATAAGAAAAACAA
30437117 TTAGAGTGAACAAAATAAGAAAAAC
1 TTAGAGTGAACAAAATAAGAAAAAC
30437142 CCCAATTCAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.56, C:0.10, G:0.15, T:0.19
Consensus pattern (27 bp):
TTAGAGTGAACAAAATAAGAAAAACAA
Found at i:30437777 original size:66 final size:66
Alignment explanation
Indices: 30437701--30437834 Score: 223
Period size: 66 Copynumber: 2.0 Consensus size: 66
30437691 GAACATGAAG
* * * *
30437701 TAAAATTTTGAGTTTCATTTATTAAATAAATTGAATATAAATATTCCTTGTTAACATGTATTTAA
1 TAAAATTTTGAGTTTCATTTATTAAATAAATTGAACATAAATATTCCTCGTAAACATGCATTTAA
30437766 T
66 T
*
30437767 TAAAATTTTGAGTTTTATTTATTAAATAAATTGAACATAAATATTCCTCGTAAACATGCATTTAA
1 TAAAATTTTGAGTTTCATTTATTAAATAAATTGAACATAAATATTCCTCGTAAACATGCATTTAA
30437832 T
66 T
30437833 TA
1 TA
30437835 TATATTCATG
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.45
Consensus pattern (66 bp):
TAAAATTTTGAGTTTCATTTATTAAATAAATTGAACATAAATATTCCTCGTAAACATGCATTTAA
T
Found at i:30438227 original size:42 final size:43
Alignment explanation
Indices: 30438117--30438236 Score: 179
Period size: 43 Copynumber: 2.8 Consensus size: 43
30438107 CGTTACAAAC
*
30438117 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCCTAGAAA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCCTAGAAA
* * **
30438160 AAAAACGCCGCTAAAGAACAGGTTCTTTAGCGGCGCTTA-AGG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCCTAGAAA
*
30438202 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCG
30438237 TTTTTTCCTA
Statistics
Matches: 70, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
42 34 0.49
43 36 0.51
ACGTcount: A:0.33, C:0.23, G:0.23, T:0.20
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCCTAGAAA
Found at i:30438319 original size:126 final size:126
Alignment explanation
Indices: 30438165--30438400 Score: 296
Period size: 126 Copynumber: 1.9 Consensus size: 126
30438155 AGAAAAAAAA
*
30438165 CGCCGCTAAAGAACAGGTTCTTTAGCGGCGCTTAAGGAAAAACGCCGCTAAAGATCATGTTCTTT
1 CGCCGCTAAAGAACAGGTTCTTTAGCGGCGCTTAAGGAAAAACGCCGCTAAAGAACATGTTCTTT
* * * *
30438230 AGCGGCGTTTTTTCCT-AATCGCCTCTAAAGAACGTGTTCTTTAGCGGCGTTTTTCCCTATG
66 AGCGGCATTTTTT-CTAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCCCTATG
* * **** * *
30438291 CGCCTCTAAAGAAC-GTGTTCTTTAGCGGCGTTTTTTTACAAGCGCCGCTAAAGAACATGTTCTT
1 CGCCGCTAAAGAACAG-GTTCTTTAGCGGCGCTTAAGGAAAAACGCCGCTAAAGAACATGTTCTT
* *
30438355 TAGTGGCATTTTTTTTACAAACGCCGCTAAAGAACATGTTCTTTAG
65 TAGCGGCATTTTTTCTA-AAACGCCGCTAAAGAACATGTTCTTTAG
30438401 TGACGCTTTT
Statistics
Matches: 92, Mismatches: 15, Indels: 5
0.82 0.13 0.04
Matches are distributed among these distances:
125 2 0.02
126 65 0.71
127 25 0.27
ACGTcount: A:0.24, C:0.22, G:0.21, T:0.33
Consensus pattern (126 bp):
CGCCGCTAAAGAACAGGTTCTTTAGCGGCGCTTAAGGAAAAACGCCGCTAAAGAACATGTTCTTT
AGCGGCATTTTTTCTAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTCCCTATG
Found at i:30438402 original size:43 final size:42
Alignment explanation
Indices: 30438119--30438400 Score: 246
Period size: 42 Copynumber: 6.7 Consensus size: 42
30438109 TTACAAACAA
* * **** **
30438119 AAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCCTAGAAAAA
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTACT
* **** *
30438162 AAACGCCGCTAAAGAACAGGTTCTTTAGCGGCGCTTAAGGA-A
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTACT
* *
30438204 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTCCT
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTACT
* * * **
30438246 AATCGCCTCTAAAGAACGTGTTCTTTAGCGGCGTTTTTCCCT
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTACT
** * *
30438288 ATGCGCCTCTAAAGAACGTGTTCTTTAGCGGCGTTTTTTTAC-
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCG-TTTTTTACT
* * *
30438330 AAGCGCCGCTAAAGAACATGTTCTTTAGTGGCATTTTTTTTAC-
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGC--GTTTTTTACT
30438373 AAACGCCGCTAAAGAACATGTTCTTTAG
1 AAACGCCGCTAAAGAACATGTTCTTTAG
30438401 TGACGCTTTT
Statistics
Matches: 206, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
41 2 0.01
42 128 0.62
43 76 0.37
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.30
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTTTTACT
Found at i:30438501 original size:14 final size:14
Alignment explanation
Indices: 30438478--30438511 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
30438468 GCCCTCCTGT
*
30438478 AGCAAAAATTCAAA
1 AGCAACAATTCAAA
30438492 AGCAACAATTCAAA
1 AGCAACAATTCAAA
30438506 AGCAAC
1 AGCAAC
30438512 CAATAGCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.59, C:0.21, G:0.09, T:0.12
Consensus pattern (14 bp):
AGCAACAATTCAAA
Found at i:30438804 original size:21 final size:21
Alignment explanation
Indices: 30438736--30438806 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
30438726 TTTTGCTCTG
*
30438736 CTCTGCTTCTCTCGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
30438757 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
30438778 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
30438799 CTCTGCTT
1 CTCTGCTT
30438807 TAAGTTGTAG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.03, C:0.46, G:0.18, T:0.32
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:30444349 original size:25 final size:25
Alignment explanation
Indices: 30444316--30444418 Score: 107
Period size: 25 Copynumber: 4.0 Consensus size: 25
30444306 TGATAGGAAG
30444316 GTTATGTATTATGTAAGTAATGTAA
1 GTTATGTATTATGTAAGTAATGTAA
* * *
30444341 GTTGTGTATTATGTGAGTTATGTAA
1 GTTATGTATTATGTAAGTAATGTAA
* * *
30444366 GTTATTTAATTTATGTAAGTTATGTAG
1 GTTATGT-A-TTATGTAAGTAATGTAA
* * *
30444393 GCTATGTATTATCTAAATAATGTAA
1 GTTATGTATTATGTAAGTAATGTAA
30444418 G
1 G
30444419 CTAGGAAGGT
Statistics
Matches: 63, Mismatches: 13, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
25 41 0.65
26 2 0.03
27 20 0.32
ACGTcount: A:0.32, C:0.02, G:0.20, T:0.46
Consensus pattern (25 bp):
GTTATGTATTATGTAAGTAATGTAA
Found at i:30444361 original size:9 final size:9
Alignment explanation
Indices: 30444316--30444451 Score: 92
Period size: 9 Copynumber: 16.0 Consensus size: 9
30444306 TGATAGGAAG
30444316 GTTATGT-A
1 GTTATGTAA
30444324 -TTATGTAA
1 GTTATGTAA
*
30444332 GTAATGTAA
1 GTTATGTAA
*
30444341 GTTGTGT-A
1 GTTATGTAA
*
30444349 -TTATGTGA
1 GTTATGTAA
30444357 GTTATGTAA
1 GTTATGTAA
*
30444366 GTTATTTAA
1 GTTATGTAA
*
30444375 TTTATGTAA
1 GTTATGTAA
*
30444384 GTTATGTAG
1 GTTATGTAA
*
30444393 GCTATGT-A
1 GTTATGTAA
*
30444401 -TTATCTAA
1 GTTATGTAA
* *
30444409 ATAATGTAA
1 GTTATGTAA
* *
30444418 GCTA-GGAA
1 GTTATGTAA
30444426 GGTTATGT-A
1 -GTTATGTAA
30444435 -TTATGTAA
1 GTTATGTAA
30444443 GTTATGTAA
1 GTTATGTAA
30444452 TTCGAAATTT
Statistics
Matches: 96, Mismatches: 22, Indels: 19
0.70 0.16 0.14
Matches are distributed among these distances:
7 21 0.22
8 8 0.08
9 66 0.69
10 1 0.01
ACGTcount: A:0.32, C:0.02, G:0.21, T:0.44
Consensus pattern (9 bp):
GTTATGTAA
Found at i:30444450 original size:34 final size:34
Alignment explanation
Indices: 30444357--30444451 Score: 91
Period size: 34 Copynumber: 2.7 Consensus size: 34
30444347 TATTATGTGA
* * * * *
30444357 GTTATGTAAGTTATTTAATTTATGTAAGTTATGTAG
1 GTTATGT-A-TTATCTAAATTATGTAAGCTAGGAAG
* *
30444393 GCTATGTATTATCTAAATAATGTAAGCTAGGAAG
1 GTTATGTATTATCTAAATTATGTAAGCTAGGAAG
* *
30444427 GTTATGTATTATGTAAGTTATGTAA
1 GTTATGTATTATCTAAATTATGTAA
30444452 TTCGAAATTT
Statistics
Matches: 48, Mismatches: 11, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
34 41 0.85
35 1 0.02
36 6 0.12
ACGTcount: A:0.34, C:0.03, G:0.20, T:0.43
Consensus pattern (34 bp):
GTTATGTATTATCTAAATTATGTAAGCTAGGAAG
Found at i:30444488 original size:20 final size:20
Alignment explanation
Indices: 30444463--30444501 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
30444453 TCGAAATTTG
30444463 ATCTTAATATTATAAAAGTA
1 ATCTTAATATTATAAAAGTA
*
30444483 ATCTTAATATTATATAAGT
1 ATCTTAATATTATAAAAGT
30444502 TATGTAATTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.46, C:0.05, G:0.05, T:0.44
Consensus pattern (20 bp):
ATCTTAATATTATAAAAGTA
Found at i:30444536 original size:37 final size:37
Alignment explanation
Indices: 30444483--30444591 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
30444473 TATAAAAGTA
* *
30444483 ATCTTAATATTATATAAGTTATGTAATTCGGAATTTT
1 ATCTTAATATTGTATAAGTTATGTAATTCGAAATTTT
*
30444520 ATCTTAATATTGTATAAGTTATGTAATTAGAAATTTT
1 ATCTTAATATTGTATAAGTTATGTAATTCGAAATTTT
* *
30444557 ACCTTATTATTGTATAAGTTATGTAATTCGAAATT
1 ATCTTAATATTGTATAAGTTATGTAATTCGAAATT
30444592 GTAACTTTAA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.36, C:0.06, G:0.11, T:0.48
Consensus pattern (37 bp):
ATCTTAATATTGTATAAGTTATGTAATTCGAAATTTT
Found at i:30444615 original size:37 final size:36
Alignment explanation
Indices: 30444485--30444622 Score: 106
Period size: 37 Copynumber: 3.7 Consensus size: 36
30444475 TAAAAGTAAT
* * *
30444485 CTTAATATTATATA-AGTTATGTAATTCGGAATTTTAT
1 CTTAAT-TTATGTATAGTTATGTAATTC-GAAATTTAA
* * *
30444522 CTTAATAT-TGTATAAGTTATGTAATTAGAAATTTTAC
1 CTTAATTTATGTAT-AGTTATGTAATTCGAAA-TTTAA
30444559 CTT-A-TTATTGTATAAGTTATGTAATTCGAAATTGTAA
1 CTTAATTTA-TGTAT-AGTTATGTAATTCGAAATT-TAA
30444596 CTTTAATTTATGTAT-GTTATGTGAATT
1 C-TTAATTTATGTATAGTTATGT-AATT
30444623 TTAACTTTAA
Statistics
Matches: 83, Mismatches: 8, Indels: 19
0.75 0.07 0.17
Matches are distributed among these distances:
35 4 0.05
36 7 0.08
37 57 0.69
38 6 0.07
39 6 0.07
40 3 0.04
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (36 bp):
CTTAATTTATGTATAGTTATGTAATTCGAAATTTAA
Found at i:30445240 original size:18 final size:18
Alignment explanation
Indices: 30445217--30445281 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
30445207 AATTTTATCT
30445217 ATTTATTTATAAAGACTA
1 ATTTATTTATAAAGACTA
*** *
30445235 ATTTATTTATTTATTTA-AA
1 ATTTATTTA--TAAAGACTA
*
30445254 ATTTTTTTATAAAGACTA
1 ATTTATTTATAAAGACTA
30445272 ATTTATTTAT
1 ATTTATTTAT
30445282 TTTTTGAGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
17 3 0.09
18 19 0.56
19 9 0.26
20 3 0.09
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.55
Consensus pattern (18 bp):
ATTTATTTATAAAGACTA
Found at i:30446421 original size:19 final size:19
Alignment explanation
Indices: 30446378--30446421 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
30446368 CTGGACTACG
*
30446378 TTGGGGAACTGTTAGGAAT
1 TTGGGGAAATGTTAGGAAT
* * *
30446397 TAGGGGAAATTTTAGGGAT
1 TTGGGGAAATGTTAGGAAT
30446416 TTGGGG
1 TTGGGG
30446422 GAGATGTCTG
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.25, C:0.02, G:0.41, T:0.32
Consensus pattern (19 bp):
TTGGGGAAATGTTAGGAAT
Found at i:30447287 original size:231 final size:230
Alignment explanation
Indices: 30446781--30447493 Score: 1140
Period size: 231 Copynumber: 3.1 Consensus size: 230
30446771 TAAAACCAAC
* *
30446781 TAAGGAAATGGCGCCGTTTTTCGTAACACCATTTCGATTTTGCGGCGTTTATATATAAGCGCCAC
1 TAAGAAAACGGCGCCGTTTTTCGTAACACCATTTCGATTTTGCGGCGTTTATATATAAGCGCCAC
*
30446846 CAAATATAAGGTCAAACGCAGTCGTTTAAAGCAAACTCCTGTAATCTTTAAAATATATTTGCGGC
66 TAAATATAAGGTCAAACGCAGTCGTTTAAAGCAAACTCCTGTAATCTTTAAAATATATTTGCGGC
* * * * *
30446911 GTTTTGGGTGTAACGCCACAAATATC-CTTGAAAACGACGCCGTTTCTGTAACAAAGAAAATATA
131 GTTTTGGGTGTAACGCCACTAATAACAATGGAAAACGACGCCGTTTC-GTAACAAAGAAAACATA
30446975 CTTGCGGCGTTTTATCTAAAACGCCACTAAATGTAA
195 CTTGCGGCGTTTTATCTAAAACGCCACTAAATGTAA
* * *
30447011 TAAGAAAACGGTGCCGTTTTTTGTAACACCATTTTCGAGTTTGCGGCGTTTATATATAAGCGCCA
1 TAAGAAAACGGCGCCGTTTTTCGTAACACCA-TTTCGATTTTGCGGCGTTTATATATAAGCGCCA
* * *
30447076 CTAAATATAAGGTCAAACGCAGTCGTTTAACGCAAACTCCTGTAATCTTTAAAATTTATTTACGG
65 CTAAATATAAGGTCAAACGCAGTCGTTTAAAGCAAACTCCTGTAATCTTTAAAATATATTTGCGG
* * * *
30447141 CATTTCGGGTATAACGCCACTAATAACAAAGGAAAACGACGCCGTTTACGTAACAAAGAAAACAT
130 CGTTTTGGGTGTAACGCCACTAATAACAATGGAAAACGACGCCGTTT-CGTAACAAAGAAAACAT
*
30447206 ACTTGCGGCGTTTTCTCTAAAACGCCACTAAATGTAA
194 ACTTGCGGCGTTTTATCTAAAACGCCACTAAATGTAA
* * * *
30447243 TAAAAAAACGGCGCCATTTTTCGTAACACCATTTCGATTTTGCGGCGTTTATATATAAGTGACAC
1 TAAGAAAACGGCGCCGTTTTTCGTAACACCATTTCGATTTTGCGGCGTTTATATATAAGCGCCAC
* * *
30447308 TAAATATAAGGTCAAACGCAGTCGTTTAATGCAAACTCGTGTAATCTTTAAAACATATTTGCGGC
66 TAAATATAAGGTCAAACGCAGTCGTTTAAAGCAAACTCCTGTAATCTTTAAAATATATTTGCGGC
30447373 GTTTTGGGTGTAACGCCACTAATAACAATGGAAAACGACGCCGTTTCCGTAACAAAGAAAACATA
131 GTTTTGGGTGTAACGCCACTAATAACAATGGAAAACGACGCCGTTT-CGTAACAAAGAAAACATA
30447438 CTTGCGGCGTTTTATCTAAAACGCCACTAAATGTAA
195 CTTGCGGCGTTTTATCTAAAACGCCACTAAATGTAA
*
30447474 TAAGAAAATGGCGCCGTTTT
1 TAAGAAAACGGCGCCGTTTT
30447494 CTTCACAACT
Statistics
Matches: 440, Mismatches: 40, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
230 27 0.06
231 318 0.72
232 94 0.21
233 1 0.00
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.29
Consensus pattern (230 bp):
TAAGAAAACGGCGCCGTTTTTCGTAACACCATTTCGATTTTGCGGCGTTTATATATAAGCGCCAC
TAAATATAAGGTCAAACGCAGTCGTTTAAAGCAAACTCCTGTAATCTTTAAAATATATTTGCGGC
GTTTTGGGTGTAACGCCACTAATAACAATGGAAAACGACGCCGTTTCGTAACAAAGAAAACATAC
TTGCGGCGTTTTATCTAAAACGCCACTAAATGTAA
Found at i:30448575 original size:18 final size:21
Alignment explanation
Indices: 30448552--30448600 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 21
30448542 ATTAATCACG
30448552 ATATTAATTTG-GTG-TTT-T
1 ATATTAATTTGTGTGATTTAT
* *
30448570 ATATTACTTTGTTTGATTTAT
1 ATATTAATTTGTGTGATTTAT
30448591 ATATTAATTT
1 ATATTAATTT
30448601 AGTCGAACTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 10 0.40
19 2 0.08
20 3 0.12
21 10 0.40
ACGTcount: A:0.27, C:0.02, G:0.10, T:0.61
Consensus pattern (21 bp):
ATATTAATTTGTGTGATTTAT
Found at i:30449160 original size:113 final size:113
Alignment explanation
Indices: 30448936--30449188 Score: 266
Period size: 113 Copynumber: 2.3 Consensus size: 113
30448926 ATTACTATTA
* * *
30448936 GCGGCGCTTC-CAAAAAAACGCCGCTAAAGAACAAATCATTAGCGGCGCTTTTAAGAAAACGCCG
1 GCGGCGCTTCTC-AGAAAACGCCGCTAAAGAACAAAGCATTACCGGCGCTTTTAAGAAAACGCCG
* * * *
30449000 CTAAAGGCCCAAAAACAAAGAAAACGGCGTCGTTGCCCTTAGGTTTTTT
65 CAAAAGGCACAAAAACAAAGAAAACGACGTCGTTGCCATTAGGTTTTTT
* **
30449049 GTGGCGCTTCTCAGAAAACGCCGCTAAAGATA-TGAGCATTACCGGCGCTTTTAA-AAAAGCGCC
1 GCGGCGCTTCTCAGAAAACGCCGCTAAAGA-ACAAAGCATTACCGGCGCTTTTAAGAAAA-CGCC
* ** * *
30449112 GCAAAAGGGACAAAAAC-TCGGAAATGACGTCGTTTG-CATTAGGTTTTTT
64 GCAAAAGGCACAAAAACAAAGAAAACGACGTCG-TTGCCATTAGGTTTTTT
* * *
30449161 GCGGCGCTTTTTAGAAATCGCCGC-AAAG
1 GCGGCGCTTCTCAGAAAACGCCGCTAAAG
30449189 TCCCCCGAGC
Statistics
Matches: 117, Mismatches: 19, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
111 4 0.03
112 46 0.39
113 65 0.56
114 2 0.02
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (113 bp):
GCGGCGCTTCTCAGAAAACGCCGCTAAAGAACAAAGCATTACCGGCGCTTTTAAGAAAACGCCGC
AAAAGGCACAAAAACAAAGAAAACGACGTCGTTGCCATTAGGTTTTTT
Found at i:30455877 original size:18 final size:19
Alignment explanation
Indices: 30455833--30455878 Score: 53
Period size: 18 Copynumber: 2.5 Consensus size: 19
30455823 TTTTTTTATT
30455833 CATAACACATCAAATATTAG
1 CATAA-ACATCAAATATTAG
30455853 CAT-AACATCAACAT-TT-G
1 CATAAACATCAA-ATATTAG
30455870 CATAAACAT
1 CATAAACAT
30455879 ATTCAAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
17 4 0.17
18 14 0.58
19 3 0.12
20 3 0.12
ACGTcount: A:0.48, C:0.22, G:0.04, T:0.26
Consensus pattern (19 bp):
CATAAACATCAAATATTAG
Found at i:30460834 original size:29 final size:28
Alignment explanation
Indices: 30460756--30460846 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 28
30460746 TATCGAAGCT
* * *
30460756 CATCGAATATGAAAAGGGATAGTTACGAC
1 CATCAAATATGAAAAGGGATGGTT-TGAC
*
30460785 CATTAAATATGAAAAGGGATGGCTTTGAC
1 CATCAAATATGAAAAGGGATGG-TTTGAC
*
30460814 CATCAAATATGGAAAGGGATGGTTTTGAC
1 CATCAAATATGAAAAGGGATGG-TTTGAC
30460843 CATC
1 CATC
30460847 GTTTAGCACA
Statistics
Matches: 54, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
29 52 0.96
30 2 0.04
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.25
Consensus pattern (28 bp):
CATCAAATATGAAAAGGGATGGTTTGAC
Found at i:30466145 original size:136 final size:136
Alignment explanation
Indices: 30465887--30466270 Score: 513
Period size: 136 Copynumber: 2.8 Consensus size: 136
30465877 GTTTATAGGA
* * * * * * *
30465887 TTCGGGTGTTGCTCTTGAATGTCCTAGCAGTGGCTGAGTTCTGGCATTTATTGCGGATACTTGAT
1 TTCGGGTGCTGGTCTTGAATGTCCTACCAGTGGCTGAGTTTTGGCATTTGTTGCGGATACTAGAC
* * * ** *
30465952 AGCTTGTGGAGCAGCACCGTGTAGCTACATTCCGA-CC-TACGACTTGTGTGAGTAGACCCAGGT
66 AGCTTGTGGAGTAGCACTGTGTAGCTACGTTCCGACCCATA-G-CTTGTGTGAACAGACCCAAGT
*
30466015 TACCATAT
129 TACAATAT
* *
30466023 TTCTGGTGCTGGTCTTGAATGTCCTACCAGTGGTTGAGTTTTGGCATTTGTTGCGGATACTAGAC
1 TTCGGGTGCTGGTCTTGAATGTCCTACCAGTGGCTGAGTTTTGGCATTTGTTGCGGATACTAGAC
*
30466088 AGCTTGTGGAGTAGCACTGTGTAGCTACGTTCTGACCCATAGCTTGTGTGAACAGACCCAAGTTA
66 AGCTTGTGGAGTAGCACTGTGTAGCTACGTTCCGACCCATAGCTTGTGTGAACAGACCCAAGTTA
30466153 CAATAT
131 CAATAT
* *
30466159 TTCGGGTGCTGGTCTTGAATGTCCTACC-GATGGCTGAGTTTTAGCATTTGTTGTGGATACTAGA
1 TTCGGGTGCTGGTCTTGAATGTCCTACCAG-TGGCTGAGTTTTGGCATTTGTTGCGGATACTAGA
* * * *
30466223 CAACTTGTGGAGTAGCACTGTGTAACTACGTTCCGACCAACAGCTTGT
65 CAGCTTGTGGAGTAGCACTGTGTAGCTACGTTCCGACCCATAGCTTGT
30466271 CTGTGTAGGC
Statistics
Matches: 219, Mismatches: 26, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
135 1 0.00
136 213 0.97
137 3 0.01
138 2 0.01
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.33
Consensus pattern (136 bp):
TTCGGGTGCTGGTCTTGAATGTCCTACCAGTGGCTGAGTTTTGGCATTTGTTGCGGATACTAGAC
AGCTTGTGGAGTAGCACTGTGTAGCTACGTTCCGACCCATAGCTTGTGTGAACAGACCCAAGTTA
CAATAT
Found at i:30483404 original size:18 final size:18
Alignment explanation
Indices: 30483357--30483405 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
30483347 AAAGGACTAG
*
30483357 GTGTGTAATCACAAACAG
1 GTGTGTAATCACAAACAA
* **
30483375 GTGCGTTTTCACAAACAA
1 GTGTGTAATCACAAACAA
30483393 GTGTGTAATCACA
1 GTGTGTAATCACA
30483406 CCCTCTCTCA
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (18 bp):
GTGTGTAATCACAAACAA
Found at i:30483613 original size:27 final size:27
Alignment explanation
Indices: 30483569--30483819 Score: 274
Period size: 27 Copynumber: 9.3 Consensus size: 27
30483559 GTAATGGGCC
*
30483569 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * ** *
30483596 TAAAATGACCGGACTACCGACAAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
30483623 TAAAATGACTGAAATA-CCTCAAATGG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
30483649 TAAAATGACCAAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* *
30483676 TAAAATGAACGAAATACCCTTGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
** * * *
30483703 TAAAATGATTGAAATACCTTTGAAGGA
1 TAAAATGACCGAAATACCCTCGAAGGG
*
30483730 TAAAATGATCGAAATACCC-CTGAAGGG
1 TAAAATGACCGAAATACCCTC-GAAGGG
* *
30483757 TAAAATAACCGAAATACCCTCGATGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
*
30483784 TAAAATGACTGAAATATCCC-CGAAGGG
1 TAAAATGACCGAAATA-CCCTCGAAGGG
30483811 TAAAATGAC
1 TAAAATGAC
30483820 TGTTATACCC
Statistics
Matches: 187, Mismatches: 33, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
26 21 0.11
27 162 0.87
28 4 0.02
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:30484032 original size:26 final size:26
Alignment explanation
Indices: 30483997--30484070 Score: 139
Period size: 26 Copynumber: 2.8 Consensus size: 26
30483987 CCACATATAT
30483997 TGTTACTGGCAGCTTTGTTGCGTTAC
1 TGTTACTGGCAGCTTTGTTGCGTTAC
30484023 TGTTACTGGCAGCTTTGTTGCGTTAC
1 TGTTACTGGCAGCTTTGTTGCGTTAC
*
30484049 TGTTACTGGCAGCTTTGCTGCG
1 TGTTACTGGCAGCTTTGTTGCG
30484071 ATATTGGTGT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.11, C:0.20, G:0.28, T:0.41
Consensus pattern (26 bp):
TGTTACTGGCAGCTTTGTTGCGTTAC
Found at i:30484244 original size:30 final size:30
Alignment explanation
Indices: 30484176--30484258 Score: 107
Period size: 30 Copynumber: 2.8 Consensus size: 30
30484166 ACTGCATTAT
* *
30484176 ACTATTAGTGTATTGGGCTAAGG--CTCAT
1 ACTATTACTGTATTGGGCTAAGGCCCTCAC
* *
30484204 ACTGTTACTGTATTTGGCTAAGGCCCTCAC
1 ACTATTACTGTATTGGGCTAAGGCCCTCAC
*
30484234 ACTATTACTGTAATGGGCTAAGGCC
1 ACTATTACTGTATTGGGCTAAGGCC
30484259 TACACTGTAC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
28 20 0.43
30 26 0.57
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (30 bp):
ACTATTACTGTATTGGGCTAAGGCCCTCAC
Found at i:30492377 original size:40 final size:40
Alignment explanation
Indices: 30492319--30492524 Score: 243
Period size: 40 Copynumber: 5.2 Consensus size: 40
30492309 ATACTATTTG
* * * * * *
30492319 ATTCAAGGTTACCAAAGTATAAACATGGGCATGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * *
30492359 ATTCAGGTGTACCGAAGTACAAACAGGGGCACATATGTAC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
*
30492399 ATTCAGGGGTACCGAAGTACATACAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
* * * *
30492439 ATTCAGGGGTACCGAAGTA-AATACAAGGCCACATATGTGT
1 ATTCAGGGGTACCGAAGTACAA-ACAGGGGCACGTATGTGC
* * *
30492479 ATTCAGGGATACCAAAGTACAAATAGGGGCACGTATGTGC
1 ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
30492519 ATTCAG
1 ATTCAG
30492525 ACAATAATCA
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
39 1 0.01
40 136 0.98
41 2 0.01
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.22
Consensus pattern (40 bp):
ATTCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGC
Found at i:30492398 original size:20 final size:20
Alignment explanation
Indices: 30492375--30492447 Score: 65
Period size: 20 Copynumber: 3.6 Consensus size: 20
30492365 GTGTACCGAA
*
30492375 GTACAAACAGGGGCACATAT
1 GTACATACAGGGGCACATAT
* * ** *
30492395 GTACATTCAGGGGTACCGAA
1 GTACATACAGGGGCACATAT
*
30492415 GTACATACAGGGGCACGTAT
1 GTACATACAGGGGCACATAT
* *
30492435 GTGCATTCAGGGG
1 GTACATACAGGGG
30492448 TACCGAAGTA
Statistics
Matches: 40, Mismatches: 13, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.30, C:0.19, G:0.32, T:0.19
Consensus pattern (20 bp):
GTACATACAGGGGCACATAT
Found at i:30492452 original size:80 final size:80
Alignment explanation
Indices: 30492319--30492524 Score: 270
Period size: 80 Copynumber: 2.6 Consensus size: 80
30492309 ATACTATTTG
* * * * * *
30492319 ATTCAAGGTTACCAAAGTATAAACATGGGCATGTATGTGCATTCAGGTGTACCGAAGTACAA-AC
1 ATTCAGGGATACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTA-AATAC
* *
30492383 AGGGGCACATATGTAC
65 AAGGCCACATATGTAC
* * *
30492399 ATTCAGGGGTACCGAAGTACATACAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTAAATACA
1 ATTCAGGGATACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTAAATACA
**
30492464 AGGCCACATATGTGT
66 AGGCCACATATGTAC
*
30492479 ATTCAGGGATACCAAAGTACAAATAGGGGCACGTATGTGCATTCAG
1 ATTCAGGGATACCAAAGTACAAACAGGGGCACGTATGTGCATTCAG
30492525 ACAATAATCA
Statistics
Matches: 109, Mismatches: 16, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
79 2 0.02
80 107 0.98
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.22
Consensus pattern (80 bp):
ATTCAGGGATACCAAAGTACAAACAGGGGCACGTATGTGCATTCAGGGGTACCGAAGTAAATACA
AGGCCACATATGTAC
Found at i:30495576 original size:40 final size:40
Alignment explanation
Indices: 30495519--30495597 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
30495509 ATACTATTTG
* *
30495519 ATTCAGGGTTACCAAAGTATAAATAGGGGCACGTATGTGC
1 ATTCAGGGTTACCAAAGTACAAACAGGGGCACGTATGTGC
*
30495559 ATTCAAGGG-TACTAAAGTACAAACAGGGGCACGTATGTG
1 ATTC-AGGGTTACCAAAGTACAAACAGGGGCACGTATGTG
30495598 AATTTAGACA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
40 31 0.89
41 4 0.11
ACGTcount: A:0.34, C:0.15, G:0.28, T:0.23
Consensus pattern (40 bp):
ATTCAGGGTTACCAAAGTACAAACAGGGGCACGTATGTGC
Found at i:30497850 original size:27 final size:27
Alignment explanation
Indices: 30497769--30498239 Score: 505
Period size: 27 Copynumber: 17.5 Consensus size: 27
30497759 ACCGAGACAT
* * * *
30497769 CGAAATACCCCAATAAGATAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
*
30497796 CGAAA-ACCCCCGTAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * * *
30497822 CGAAATATCCCGATAGGGTAAATTAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
30497849 CGAAATACACCCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
30497876 CGAAATACCCTCATAAGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
30497903 CGAAATA-CCCCGTAGTGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
30497929 CAAAATACACCCATAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* * * *
30497956 TGAAATACCCTCATAAGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
30497983 CAAAATACCCCCATAAGGTAAAATGGC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
30498010 CGAAATACCCCTATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
30498037 CAAAATACCCCTATAGGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * *
30498064 TGAAATACCCCTATAGGGTAAAATGAT
1 CGAAATACCCCCATAGGGTAAAATGAC
* * * * *
30498091 CGAATTACCCTCGTAAGGTAAAATAAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
30498118 TGAAATACCCCCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* * * *
30498145 TGAAATATCACCATAGGTTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
* *
30498172 CAAAATACCCTCATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
*
30498199 CGAAATACCCCTATAGGGTAAAATGAC
1 CGAAATACCCCCATAGGGTAAAATGAC
**
30498226 TAAAATACCCCCAT
1 CGAAATACCCCCAT
30498240 TGTACTATTA
Statistics
Matches: 364, Mismatches: 78, Indels: 4
0.82 0.17 0.01
Matches are distributed among these distances:
26 41 0.11
27 323 0.89
ACGTcount: A:0.44, C:0.21, G:0.16, T:0.20
Consensus pattern (27 bp):
CGAAATACCCCCATAGGGTAAAATGAC
Found at i:30500286 original size:27 final size:27
Alignment explanation
Indices: 30500240--30500614 Score: 367
Period size: 27 Copynumber: 13.9 Consensus size: 27
30500230 CGAGACATCA
** **
30500240 AAATACCCCGGTAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGACCG
* * *
30500267 AAATACCCCCGTAAGATAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* **
30500294 AAATACCCCC-TAGGGTAAATTGGTCG
1 AAATACCCCCATAGGGTAAAATGACCG
** *
30500320 AAATACCCCCATAGGGTAAAAACATCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * **
30500347 AAATATCCCCATTGGGTAAAATGACTA
1 AAATACCCCCATAGGGTAAAATGACCG
* *
30500374 AAATACCCTCGTAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * *
30500401 AAATACCCTCATTGGGTAGAATGACCA
1 AAATACCCCCATAGGGTAAAATGACCG
* *
30500428 AAATACCCTCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
30500455 AAATACCCCCATAGGGTAAAATGATCG
1 AAATACCCCCATAGGGTAAAATGACCG
** * * **
30500482 AAATACCCCTGTATGGTAGAATGATTG
1 AAATACCCCCATAGGGTAAAATGACCG
* **
30500509 AAATA-CCCCATTAGGGTAAAATTACTA
1 AAATACCCCCA-TAGGGTAAAATGACCG
30500536 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
* * * *
30500563 AAATGCCCTCGTAGGGTAGAATGACCG
1 AAATACCCCCATAGGGTAAAATGACCG
*
30500590 AAATACCCCCATAAGGTAAAATGAC
1 AAATACCCCCATAGGGTAAAATGAC
30500615 TGGTATACCC
Statistics
Matches: 285, Mismatches: 60, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
26 24 0.08
27 256 0.90
28 5 0.02
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACCG
Found at i:30500859 original size:26 final size:26
Alignment explanation
Indices: 30500806--30500862 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
30500796 TTTGACAGAT
* *
30500806 ATATTGTTACTGGCAGCTTCACTGCG
1 ATATTATTACTGGCAGCTTCACTACG
* **
30500832 ATATTATTCCTGGCAGCTTTGCTACG
1 ATATTATTACTGGCAGCTTCACTACG
30500858 ATATT
1 ATATT
30500863 GGTGTGTTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (26 bp):
ATATTATTACTGGCAGCTTCACTACG
Found at i:30501018 original size:28 final size:28
Alignment explanation
Indices: 30500974--30501080 Score: 151
Period size: 28 Copynumber: 3.8 Consensus size: 28
30500964 CTGGTCACTA
* * *
30500974 TATTGGGCTAAGACCCACATTGTTATTG
1 TATTGGGCTAAGGCCCACACTGTTACTG
30501002 TATTGGGCTAAGGCCCACACTGTTACTG
1 TATTGGGCTAAGGCCCACACTGTTACTG
*
30501030 TATTGGGCTAAGGCCCACACTGTTACTA
1 TATTGGGCTAAGGCCCACACTGTTACTG
* * *
30501058 TATCGAGCTAAGGCACACACTGT
1 TATTGGGCTAAGGCCCACACTGT
30501081 ACTATTACTG
Statistics
Matches: 72, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 72 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (28 bp):
TATTGGGCTAAGGCCCACACTGTTACTG
Found at i:30502860 original size:29 final size:27
Alignment explanation
Indices: 30502842--30502911 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
30502832 ATATTAAGTC
30502842 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
30502869 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
30502897 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
30502912 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:30502905 original size:28 final size:28
Alignment explanation
Indices: 30502842--30502939 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
30502832 ATATTAAGTC
*
30502842 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
30502869 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
30502897 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
30502926 CGCACACTTAGTGC
1 CGCACACTTAGTGC
30502940 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:30510894 original size:29 final size:27
Alignment explanation
Indices: 30510876--30510945 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
30510866 ATATTAAGTC
30510876 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
30510903 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
30510931 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
30510946 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:30510939 original size:28 final size:28
Alignment explanation
Indices: 30510876--30510973 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
30510866 ATATTAAGTC
*
30510876 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
30510903 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
30510931 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
30510960 CGCACACTTAGTGC
1 CGCACACTTAGTGC
30510974 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:30514777 original size:27 final size:27
Alignment explanation
Indices: 30514746--30514839 Score: 84
Period size: 27 Copynumber: 3.5 Consensus size: 27
30514736 TCTTGTCAGT
*
30514746 ACATAAAATAGTCATGATGGAGC-TTCC
1 ACATAAAATAGTCATGATAGA-CTTTCC
*
30514773 ACATAAAATAGTCTTGATAGACTTTCC
1 ACATAAAATAGTCATGATAGACTTTCC
* * * *
30514800 ACA-AAAGATAGTCCTGAAAAACTTCCC
1 ACATAAA-ATAGTCATGATAGACTTTCC
* *
30514827 GCATAATATAGTC
1 ACATAAAATAGTC
30514840 CTTGTAGACT
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
26 4 0.07
27 50 0.89
28 2 0.04
ACGTcount: A:0.39, C:0.20, G:0.14, T:0.27
Consensus pattern (27 bp):
ACATAAAATAGTCATGATAGACTTTCC
Found at i:30524374 original size:28 final size:27
Alignment explanation
Indices: 30524307--30524481 Score: 224
Period size: 28 Copynumber: 6.2 Consensus size: 27
30524297 CAGTGATAGT
* *
30524307 ACAGTGTGGGCCTTAGCCCAAAAACAATA
1 ACAGTGTGGGCCTTAGCCC-AATAC-AGA
30524336 ACAGTGTGGGCCTTAGCCCAATACAGTA
1 ACAGTGTGGGCCTTAGCCCAATACAG-A
* **
30524364 ACAGTGTGGGCGTTAGATCAATACAGA
1 ACAGTGTGGGCCTTAGCCCAATACAGA
30524391 ATCAGTGTGGGCCTTAGCCCAATACAGA
1 A-CAGTGTGGGCCTTAGCCCAATACAGA
*
30524419 ATCAGTGTGGGCCTTATCCCAATACAGA
1 A-CAGTGTGGGCCTTAGCCCAATACAGA
*
30524447 ATCAGTGTGGGCCTTAGTCCAATACAGTA
1 A-CAGTGTGGGCCTTAGCCCAATACAG-A
30524476 ACAGTG
1 ACAGTG
30524482 CAGTGCAATA
Statistics
Matches: 132, Mismatches: 11, Indels: 7
0.88 0.07 0.05
Matches are distributed among these distances:
27 3 0.02
28 108 0.82
29 21 0.16
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (27 bp):
ACAGTGTGGGCCTTAGCCCAATACAGA
Found at i:30524880 original size:52 final size:54
Alignment explanation
Indices: 30524817--30524936 Score: 138
Period size: 54 Copynumber: 2.2 Consensus size: 54
30524807 ATGCCATAAC
*
30524817 AGTCATTTTATCTCCTAGGGATA-AT-AATCATTTTA-TCCTATGGGGGTATTTT
1 AGTCATTTTATCTCATAGGGATATATCAATCATTTTACT-CTATGGGGGTATTTT
* * * * **
30524869 GGTCATTTTATCTTATAGGGGTATTTCGGTCATTTTACTCTATGGGGGTATTTT
1 AGTCATTTTATCTCATAGGGATATATCAATCATTTTACTCTATGGGGGTATTTT
30524923 AGTCATTTTCATCT
1 AGTCATTTT-ATCT
30524937 ATTAGAGGTA
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
52 19 0.34
53 1 0.02
54 31 0.55
55 5 0.09
ACGTcount: A:0.21, C:0.13, G:0.19, T:0.47
Consensus pattern (54 bp):
AGTCATTTTATCTCATAGGGATATATCAATCATTTTACTCTATGGGGGTATTTT
Found at i:30524937 original size:27 final size:26
Alignment explanation
Indices: 30524844--30524938 Score: 127
Period size: 27 Copynumber: 3.5 Consensus size: 26
30524834 GGGATAATAA
30524844 TCATTTTATCCTATGGGGGTATTTTGG
1 TCATTTTAT-CTATGGGGGTATTTTGG
* *
30524871 TCATTTTATCTTATAGGGGTATTTCGG
1 TCATTTTATC-TATGGGGGTATTTTGG
*
30524898 TCATTTTACTCTATGGGGGTATTTTAG
1 TCATTTTA-TCTATGGGGGTATTTTGG
30524925 TCATTTTCATCTAT
1 TCATTTT-ATCTAT
30524939 TAGAGGTAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
26 1 0.02
27 56 0.93
28 3 0.05
ACGTcount: A:0.18, C:0.13, G:0.20, T:0.49
Consensus pattern (26 bp):
TCATTTTATCTATGGGGGTATTTTGG
Found at i:30528739 original size:26 final size:25
Alignment explanation
Indices: 30528707--30528772 Score: 78
Period size: 26 Copynumber: 2.6 Consensus size: 25
30528697 CTATAAACAC
* *
30528707 TTCATATAACCATTCATATATTTAT
1 TTCATATAACCATTCATATAGTAAT
*
30528732 TTCTATATAAACATTTCATATAGTAAT
1 TTC-ATATAACCA-TTCATATAGTAAT
*
30528759 TTCATAAAACCATT
1 TTCATATAACCATT
30528773 TATCACATAA
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
25 5 0.15
26 15 0.44
27 14 0.41
ACGTcount: A:0.39, C:0.15, G:0.02, T:0.44
Consensus pattern (25 bp):
TTCATATAACCATTCATATAGTAAT
Found at i:30532621 original size:26 final size:26
Alignment explanation
Indices: 30532574--30532772 Score: 175
Period size: 26 Copynumber: 7.7 Consensus size: 26
30532564 TATATTCCCC
* * *
30532574 GGCTCAATGTCTGGTAAATAAACACT
1 GGCTCAAAGCCTGCTAAATAAACACT
*
30532600 GGCTCAAAGCCTGCTAAGTAAACAAC-
1 GGCTCAAAGCCTGCTAAATAAAC-ACT
* *
30532626 GGCTCAAAGCCAGCTAAATAATCACT
1 GGCTCAAAGCCTGCTAAATAAACACT
**
30532652 GATTCAAAGCCTGCTAAATAAACACT
1 GGCTCAAAGCCTGCTAAATAAACACT
* * * * * * *
30532678 AGCTCATAGACTACTAAGTAATCACC
1 GGCTCAAAGCCTGCTAAATAAACACT
* *
30532704 GGCTCAAAACCTACTAAATAAACACT
1 GGCTCAAAGCCTGCTAAATAAACACT
* * * *
30532730 GACTCAAGGCCTACTAAATGAACACT
1 GGCTCAAAGCCTGCTAAATAAACACT
* *
30532756 CGCTCAAGGCCTGCTAA
1 GGCTCAAAGCCTGCTAA
30532773 TCAGGTACAT
Statistics
Matches: 137, Mismatches: 34, Indels: 4
0.78 0.19 0.02
Matches are distributed among these distances:
25 2 0.01
26 133 0.97
27 2 0.01
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.21
Consensus pattern (26 bp):
GGCTCAAAGCCTGCTAAATAAACACT
Found at i:30532721 original size:78 final size:78
Alignment explanation
Indices: 30532588--30532762 Score: 217
Period size: 78 Copynumber: 2.2 Consensus size: 78
30532578 CAATGTCTGG
* * * * *
30532588 TAAATAAACACTGGCTCAAAGCCTGCTAAGTAAACAACGGCTCAAAGCCAGCTAAATAATCACTG
1 TAAATAAACACTAGCTCAAAGACTACTAAGTAAACAACGGCTCAAAACCAGCTAAATAAACACTG
* *
30532653 ATTCAAAGCCTGC
66 ACTCAAAGCCTAC
* * *
30532666 TAAATAAACACTAGCTCATAGACTACTAAGTAATCACCGGCTCAAAACCTA-CTAAATAAACACT
1 TAAATAAACACTAGCTCAAAGACTACTAAGTAAACAACGGCTCAAAACC-AGCTAAATAAACACT
*
30532730 GACTCAAGGCCTAC
65 GACTCAAAGCCTAC
* *
30532744 TAAATGAACACTCGCTCAA
1 TAAATAAACACTAGCTCAA
30532763 GGCCTGCTAA
Statistics
Matches: 82, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
78 81 0.99
79 1 0.01
ACGTcount: A:0.41, C:0.26, G:0.13, T:0.20
Consensus pattern (78 bp):
TAAATAAACACTAGCTCAAAGACTACTAAGTAAACAACGGCTCAAAACCAGCTAAATAAACACTG
ACTCAAAGCCTAC
Found at i:30539572 original size:41 final size:42
Alignment explanation
Indices: 30539521--30539626 Score: 135
Period size: 41 Copynumber: 2.5 Consensus size: 42
30539511 AGGGTAAATC
* * *
30539521 CAACAGCCCAAGTTTATCTTCTCCT-TTTTTAAATTTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTT
30539562 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTT
1 CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTT
* *
30539604 GCCAA-TACTCAAGATTATCTTCT
1 --CAACAACCCAAGATTATCTTCT
30539627 TTTGAATTTA
Statistics
Matches: 57, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
41 23 0.40
42 15 0.26
43 16 0.28
44 3 0.05
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (42 bp):
CAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTT
Found at i:30539591 original size:43 final size:42
Alignment explanation
Indices: 30539520--30539626 Score: 121
Period size: 43 Copynumber: 2.5 Consensus size: 42
30539510 TAGGGTAAAT
* *
30539520 CCAACAGCCCAAGTTTATCTTCTCCTTTTTTAAATT-TTTTT-
1 CCAACAACCCAAGATTATCTTCTCC-TTTTTAAATTCTTTTTG
*
30539561 TCAACAACCCAAGATTATCTTCTCCTCTTTTTAAATTCTTTTTG
1 CCAACAACCCAAGATTATCTTCT-C-CTTTTTAAATTCTTTTTG
* *
30539605 CCAA-TACTCAAGATTATCTTCT
1 CCAACAACCCAAGATTATCTTCT
30539627 TTTGAATTTA
Statistics
Matches: 56, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
41 20 0.36
42 11 0.20
43 22 0.39
44 3 0.05
ACGTcount: A:0.25, C:0.25, G:0.05, T:0.45
Consensus pattern (42 bp):
CCAACAACCCAAGATTATCTTCTCCTTTTTAAATTCTTTTTG
Found at i:30546817 original size:79 final size:80
Alignment explanation
Indices: 30546705--30546928 Score: 287
Period size: 79 Copynumber: 2.8 Consensus size: 80
30546695 GCTCCTCGTT
* *
30546705 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCC-TCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
30546768 GATTTAGTAACTCGCA
65 GAATTAGTAACTCGCA
* *
30546784 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
30546848 AATTAGTATCTCGCA
66 AATTAGTAACTCGCA
* * * * *
30546863 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
30546926 GGA
64 GGA
30546929 CATCATTCAA
Statistics
Matches: 127, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 3 0.02
79 99 0.78
80 25 0.20
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
AATTAGTAACTCGCA
Found at i:30546928 original size:40 final size:40
Alignment explanation
Indices: 30546705--30546928 Score: 278
Period size: 40 Copynumber: 5.7 Consensus size: 40
30546695 GCTCCTCGTT
* *
30546705 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
30546745 CAAATGCC-TCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
30546784 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
30546824 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
30546863 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
30546904 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
30546929 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 2 0.01
39 66 0.41
40 82 0.51
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:30552920 original size:45 final size:43
Alignment explanation
Indices: 30552828--30553490 Score: 171
Period size: 43 Copynumber: 15.3 Consensus size: 43
30552818 TACAAGATCG
* * *
30552828 TATCTCCTTGAAGTTGTAGTG-GAGCAGACT-AAGTAGGCAAGTCT
1 TATCTCC-TGAAGTTGCAGTGAG-GCAGACTAAAGT-CGCAAATCT
* * *
30552872 TATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATTGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGAGGCAGACTAAAG-TCGCAAATCT
* * * **
30552917 TATCTCCCTTAAGTTGCAGGGA-GCAGATTAAAGTCGGTAATCT
1 TATCT-CCTGAAGTTGCAGTGAGGCAGACTAAAGTCGCAAATCT
* * ** ** *
30552960 TATCTCGCTGAAGTTGCAGTGA-GCGGATTAAAACCTTAGATCT
1 TATCTC-CTGAAGTTGCAGTGAGGCAGACTAAAGTCGCAAATCT
* * * **
30553003 TATTTCTCTGAAGTTACA--GA-G-AG-C-ATA-TCGCATCTAGCCT
1 TATCTC-CTGAAGTTGCAGTGAGGCAGACTAAAGTCGCA---AATCT
* * * *
30553043 TATCCTCCTGACGTTGCAGTGA-GTAGACTGAAGATGGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGAGGCAGACTAAAG-TCGCAAATCT
* * * * * **
30553087 TATCTCCCTGAAGTTGTAGTGAAGCAAATTAAAGCCGGTAAT-T
1 TATCT-CCTGAAGTTGCAGTGAGGCAGACTAAAGTCGCAAATCT
* * ** ** *
30553130 CTATCTCACTGAAGTTGCAGTGA-GCGGATTAAAACCTTAGATCT
1 -TATCTC-CTGAAGTTGCAGTGAGGCAGACTAAAGTCGCAAATCT
* * * *
30553174 TATCTCTCTGAAGTTGCAGAGA-GCAGA-T--CG-CGTCTAGTCT
1 TATCTC-CTGAAGTTGCAGTGAGGCAGACTAAAGTCG-CAAATCT
* * *
30553214 TATCCTTCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGAGGCAGACTAAAG-TCGCAAATCT
* * * * * *
30553259 TATCGCCCTGAAGTTGCAGTG-GAGTAGATTAAAGCCGATAAATCC
1 TATC-TCCTGAAGTTGCAGTGAG-GCAGACTAAAGTCG-CAAATCT
* * * ** ** *
30553304 TATCTCGCTAAAGTTGTAGTGA-GCAGATTAAAACCTTAGATCT
1 TATCTC-CTGAAGTTGCAGTGAGGCAGACTAAAGTCGCAAATCT
* * * * *
30553347 TATCTCTCTGATA-TTGCAGAGA-GCAGA-T--CG-CATCTAGTCT
1 TATCTC-CTGA-AGTTGCAGTGAGGCAGACTAAAGTC-GCAAATCT
* * *
30553387 TATCCTCCTGAAGTTGCAGTGAGGCAGGCTGAAGATGGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGAGGCAGACTAAAG-TCGCAAATCT
* *
30553432 TATCTCCCTGAAGTTGCAGTG-GAGCAGATTAAAG-CG-ATAATCC
1 TATCT-CCTGAAGTTGCAGTGAG-GCAGACTAAAGTCGCA-AATCT
30553475 TATCTTCCTGAAGTTG
1 TATC-TCCTGAAGTTG
30553491 TAAGTGGAGT
Statistics
Matches: 456, Mismatches: 114, Indels: 99
0.68 0.17 0.15
Matches are distributed among these distances:
37 2 0.00
38 2 0.00
39 3 0.01
40 54 0.12
41 19 0.04
42 9 0.02
43 141 0.31
44 98 0.21
45 122 0.27
46 2 0.00
47 4 0.01
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (43 bp):
TATCTCCTGAAGTTGCAGTGAGGCAGACTAAAGTCGCAAATCT
Found at i:30553065 original size:83 final size:83
Alignment explanation
Indices: 30552958--30553592 Score: 278
Period size: 88 Copynumber: 7.4 Consensus size: 83
30552948 AGTCGGTAAT
* * *
30552958 CTTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATTTCTCTGAAGTTACAGA
1 CTTATCTCACTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGA
*
30553023 GAGCATATCGCATCTAGC
66 GAGCATATCGCATCTAGA
* ** * * **** * * *
30553041 CTTATCCTC-CTGACGTTGCAGTGAGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGTA
1 CTTAT-CTCACTGAAGTTGCAGTGAGCGGA-TTAAAACCTTAGATCTTATCTCTCTGAAGTTGCA
* ** ***
30553105 GTGAAGCAAATTAAAGCCGGTA-A
64 GAG-AGC--A-TATCGCATCTAGA
*
30553128 TTCTATCTCACTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAG
1 CT-TATCTCACTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAG
* * *
30553193 AGAGCAGATCGCGTCTAGT
65 AGAGCATATCGCATCTAGA
* * * * **** * * *
30553212 CTTATC-CTTCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCGCCCTGAAGTTGC
1 CTTATCTC-ACTGAAGTTGCAGTGA-GCGGA-TTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
** *** *
30553276 AGTGGAGTAG-ATTAAAGCCGATAAA
63 A---GAG-AGCA-TATCGCATCTAGA
* * * * *
30553301 TCCTATCTCGCTAAAGTTGTAGTGAGCAGATTAAAACCTTAGATCTTATCTCTCTGATA-TTGCA
1 -CTTATCTCACTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGA-AGTTGCA
* *
30553365 GAGAGCAGATCGCATCTAGT
64 GAGAGCATATCGCATCTAGA
* * * **** * *
30553385 CTTATCCTC-CTGAAGTTGCAGTGAGGCAGGCTGAAGATGGCAAATCTTATCTCCCTGAAGTTGC
1 CTTAT-CTCACTGAAGTTGCAGTGA-GC-GGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* * *** *
30553449 AGTGGAGCAGATTAAAGCGATA-A
63 AG-AGAGCATATCGCATC--TAGA
* * * *
30553472 TCCTATCTTC-CTGAAGTTGTAAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTG
1 -CTTATC-TCACTGAAGTTG-CAGT-GAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTG
* * * * *
30553536 CAGAGAGTAGATCGTATTTAGT
62 CAGAGAGCATATCGCATCTAGA
* *
30553558 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
1 CTTATCTCACTGAAGTTGCAGT-GAGCGGATTAAA
30553593 GCCGATAATT
Statistics
Matches: 391, Mismatches: 127, Indels: 67
0.67 0.22 0.11
Matches are distributed among these distances:
82 1 0.00
83 63 0.16
84 63 0.16
85 74 0.19
86 13 0.03
87 41 0.10
88 98 0.25
89 17 0.04
90 20 0.05
91 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (83 bp):
CTTATCTCACTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGA
GAGCATATCGCATCTAGA
Found at i:30553366 original size:173 final size:172
Alignment explanation
Indices: 30552867--30553580 Score: 1044
Period size: 173 Copynumber: 4.2 Consensus size: 172
30552857 TAAGTAGGCA
* * *
30552867 AGTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATTGCAAATCTTATCTCCCTTAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * *
30552932 GCAG-GGAGCAGATTAAAGTCGGTAATCTTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
66 GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
* * *
30552996 TAGATCTTATTTCTCTGAAGTTACAGAGAGCATATCGCATCT
131 TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* * *
30553038 AGCCTTATCCTCCTGACGTTGCAGTGA-GTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * * * * *
30553102 GTAGTGAAGCAAATTAAAGCCGGTAATTCTATCTCACTGAAGTTGCAGTGAGCGGATTAAAACCT
66 GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
*
30553167 TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCGTCT
131 TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* *
30553209 AGTCTTATCCTTCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCGCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * * *
30553274 GCAGTGGAGTAGATTAAAGCCGATAAATCCTATCTCGCTAAAGTTGTAGTGAGCAGATTAAAACC
66 GCAGTGGAGCAGATTAAAGCCGAT-AATCCTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACC
30553339 TTAGATCTTATCTCTCTGATA-TTGCAGAGAGCAGATCGCATCT
130 TTAGATCTTATCTCTCTGA-AGTTGCAGAGAGCAGATCGCATCT
*
30553382 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGGCTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* *
30553447 GCAGTGGAGCAGATTAAAG-CGATAATCCTATCTTC-CTGAAGTTGTAAGTGGAGTGGATTAAAA
66 GCAGTGGAGCAGATTAAAGCCGATAATCCTATC-TCGCTGAAGTTG-CAGT-GAGCGGATTAAAA
* * * *
30553510 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGTATTT
128 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
30553555 AGTCTTAT-CTCCCTGAAGTTGCAGTG
1 AGTCTTATCCT-CCTGAAGTTGCAGTG
30553581 GAGCAGATTA
Statistics
Matches: 491, Mismatches: 43, Indels: 16
0.89 0.08 0.03
Matches are distributed among these distances:
170 38 0.08
171 158 0.32
172 66 0.13
173 228 0.46
174 1 0.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (172 bp):
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
Found at i:30553563 original size:128 final size:129
Alignment explanation
Indices: 30553429--30553714 Score: 486
Period size: 130 Copynumber: 2.2 Consensus size: 129
30553419 AGATGGCAAA
*
30553429 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CGATAATCCTATC-TTCCTGAAGTTGT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTTCCTAAAGTTG-
*
30553492 AAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGTATTTAG
65 AAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
*
30553557 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATTCTATCTTTTCCTAAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATC-TTTCCTAAAGTTG
*
30553622 CAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
65 AAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
*
30553687 TCTTATCTCCTTGAAAGTTGCAGTGGAG
1 TCTTATCTCCCTG-AAGTTGCAGTGGAG
30553715 TAGGCTAAAG
Statistics
Matches: 149, Mismatches: 5, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
128 37 0.25
129 12 0.08
130 75 0.50
131 25 0.17
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTTCCTAAAGTTGA
AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
Found at i:30553754 original size:130 final size:127
Alignment explanation
Indices: 30553429--30553755 Score: 446
Period size: 130 Copynumber: 2.5 Consensus size: 127
30553419 AGATGGCAAA
* *
30553429 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCGA-TAATCCTATCTTCCTGAAGTTGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-ACTATTCCTATCTTCCTGAAGTTG-C
*
30553493 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGTATTTAG
64 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
*
30553557 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-CGATAATT-CTATCTTTTCCTAAAGT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCAC--T-ATTCCTATC--TTCCTGAAGT
30553620 TGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTT
61 TGCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTT
30553685 AG
126 AG
* * ** *
30553687 TCTTATCTCCTTGAAAGTTGCAGTGGAGTAGGCTAAAGCACTAGTTTCCTATACTT-CTGAAGAT
1 TCTTATCTCCCTG-AAGTTGCAGTGGAGCAGATTAAAGCACTA--TTCCTAT-CTTCCTGAAGTT
30553751 GCAGT
62 GCAGT
30553756 ATGAAGGAAT
Statistics
Matches: 177, Mismatches: 10, Indels: 22
0.85 0.05 0.11
Matches are distributed among these distances:
128 38 0.21
129 7 0.04
130 89 0.50
131 37 0.21
132 5 0.03
133 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (127 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCACTATTCCTATCTTCCTGAAGTTGCAG
TGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
Found at i:30555624 original size:95 final size:93
Alignment explanation
Indices: 30555444--30555632 Score: 276
Period size: 95 Copynumber: 2.0 Consensus size: 93
30555434 GTACAATAAA
*
30555444 ACTTTAAAAGAACCACTCATCCAAGATTTAAGAAATCACACCAATACGTTAGGGCACGATTCCTA
1 ACTTTAAAAGAACCACTCATCCAAGATTTAAGAAATCACACCAATACGTTAGGGCACAATTCCTA
30555509 AGAATCCCAAACTCGAAATATTTCCTTT
66 AGAATCCCAAACTCGAAATATTTCCTTT
* *
30555537 ACTTTAAAAGACATCCACTTATCCAAGA-TTAAGAAATCACACCCAATACTTTAGGGCACAATTC
1 ACTTTAAAAGA-A-CCACTCATCCAAGATTTAAGAAATCACA-CCAATACGTTAGGGCACAATTC
*
30555601 CTTTAA-AAT-CCAAACTCGGAATATTTCCTTT
63 C--TAAGAATCCCAAACTCGAAATATTTCCTTT
30555632 A
1 A
30555633 TTATTTTTAA
Statistics
Matches: 87, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
93 11 0.13
94 14 0.16
95 56 0.64
96 3 0.03
97 3 0.03
ACGTcount: A:0.39, C:0.24, G:0.10, T:0.28
Consensus pattern (93 bp):
ACTTTAAAAGAACCACTCATCCAAGATTTAAGAAATCACACCAATACGTTAGGGCACAATTCCTA
AGAATCCCAAACTCGAAATATTTCCTTT
Found at i:30556931 original size:19 final size:19
Alignment explanation
Indices: 30556907--30556981 Score: 96
Period size: 19 Copynumber: 3.8 Consensus size: 19
30556897 AATCATATAT
30556907 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
30556926 TCTAAGATTGCATATATGATA
1 TCTAAGATTGC--ATATCATA
** *
30556947 TCTTGGGTTGCATATCATA
1 TCTAAGATTGCATATCATA
30556966 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
30556982 CTCAAAAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 31 0.67
21 15 0.33
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:30557294 original size:44 final size:44
Alignment explanation
Indices: 30557193--30558030 Score: 342
Period size: 44 Copynumber: 19.5 Consensus size: 44
30557183 TTCAATCTAA
*
30557193 TCCACTGCAACTTCAGG-GAGATAAGACTTGCCATCTTCAGTCTG-
1 TCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTCTT-AGTCTGC
30557237 TCTCACTGCAACTTCAGGAG-GATAAGACTTGCTTCCTTAGTCTGC
1 TC-CACTGCAACTTCAGGAGAGATAAGACTTGCTT-CTTAGTCTGC
* * * *
30557282 TCCACTGCAACTTCA-G-GAGATAAGACTAGATGC-GA-TCTGC
1 TCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTGC
* * * *
30557322 T-CTCTGCAACTTCA-GAGAGATAAGATCTGTGATT-TTAATCCGC
1 TCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCTTCTTAGTCTGC
* * * * *
30557365 TCTACTGCAACTTCAGG-GAGATAGGA-TT-ATTGGCTTTAATTTGC
1 TCCACTGCAACTTCAGGAGAGATAAGACTTGCTT--C-TTAGTCTGC
* * *
30557409 TCCACTGCAACTTTAGG-GAGATAAGATTTGCCATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTCTT-AGTCTGC
*
30557454 -CTCACTGTAACTTCAGGAG-GATAAGACTTGCTTACTTAGTCTG-
1 TC-CACTGCAACTTCAGGAGAGATAAGACTTGCTT-CTTAGTCTGC
* * * * *
30557497 TCCACCGCAACTTCAGG-GAGATAAGACTAG-ATGTGA-TCTGC
1 TCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTGC
* * * ** * *
30557538 T-CTCTGTAAATTCA-GAGAGATAAGATCTGTAATT-TTAATCCGC
1 TCCACTGCAACTTCAGGAGAGATAAGA-CT-TGCTTCTTAGTCTGC
* * ** *
30557581 TCCACTGCAACTTTAGG-GAGATAGGA-TTGTCGGCTTTAATCTGC
1 TCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTC-TTAGTCTGC
* * * *
30557625 TCCACTGCGACTTCAGGA-AGATAAGATTTTCCATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGAGAGATAAGA-CTTGCTTCTT-AGTCTGC
* *
30557670 T-CACTGTAACTTTA-G-GAGATAAGACTTGCTTACTTAGTCTTG-
1 TCCACTGCAACTTCAGGAGAGATAAGACTTGCTT-CTTAGTC-TGC
* * * * *
30557712 TCCACCGCAACTTCAGG-GAGATAAGACTAGATGC-GA-TCTGC
1 TCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTGC
** * ** * * *
30557753 T-TTCTGTAACTTCA-GAG-GATAGAGATCTGTAATT-TTAATCCGT
1 TCCACTGCAACTTCAGGAGAGATA-AGA-CT-TGCTTCTTAGTCTGC
* * *
30557796 TCCACTGCAACTTCAGGGAGAGAT-TG--TCGC-T-TTA-TCTAC
1 TCCACTGCAACTTCA-GGAGAGATAAGACTTGCTTCTTAGTCTGC
* * *
30557835 TCCACTGCAACTTCAGGA-AAATAAGATTTGCCATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGAGAGATAAGACTTG-CTTCTT-AGTCTGC
* * * *
30557880 -CTCACTGTAACTTTAGAAG-GATAAGACTTGCTTACTTAGTTTGC
1 TC-CACTGCAACTTCAGGAGAGATAAGACTTGCTT-CTTAGTCTGC
* * * * * *
30557924 TCTACTGCAGCTTCAGG-GAGATAAGACTAGATGC-GA-TCTGC
1 TCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTGC
* * * * * *
30557965 T-CTCTGCAACTTCAGAAG-GATAAGATCAGTGATT-TTAATCCGC
1 TCCACTGCAACTTCAGGAGAGATAAGA-C-TTGCTTCTTAGTCTGC
30558008 TCCACTGCAACTTCAGG-GAGATA
1 TCCACTGCAACTTCAGGAGAGATA
30558031 GGATTGGTCG
Statistics
Matches: 595, Mismatches: 123, Indels: 152
0.68 0.14 0.17
Matches are distributed among these distances:
37 3 0.01
38 4 0.01
39 36 0.06
40 79 0.13
41 23 0.04
42 32 0.05
43 85 0.14
44 215 0.36
45 107 0.18
46 7 0.01
47 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGAGAGATAAGACTTGCTTCTTAGTCTGC
Found at i:30557372 original size:83 final size:84
Alignment explanation
Indices: 30557193--30557387 Score: 211
Period size: 83 Copynumber: 2.3 Consensus size: 84
30557183 TTCAATCTAA
* *
30557193 TCCACTGCAACTTCAGGGAGATAAGACTTGCCAT-CTTCAGTCTGTCTCACTGCAACTTCAGGAG
1 TCCACTGCAACTTCAGGGAGATAAGACTAG--ATGC--GA-TCTGTCTCACTGCAACTTCAGGAG
* * *
30557257 GATAAGACTTGCTTCCTTAGTCTGC
61 GATAAGACTTGATT-CTTAATCCGC
*
30557282 TCCACTGCAACTTCA-GGAGATAAGACTAGATGCGATCTG-CTCTCTGCAACTTCA-GAGAGATA
1 TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGTCTCACTGCAACTTCAGGAG-GATA
30557344 AGATCTGTGATT-TTAATCCGC
65 AGA-CT-TGATTCTTAATCCGC
*
30557365 TCTACTGCAACTTCAGGGAGATA
1 TCCACTGCAACTTCAGGGAGATA
30557388 GGATTATTGG
Statistics
Matches: 94, Mismatches: 7, Indels: 15
0.81 0.06 0.13
Matches are distributed among these distances:
82 3 0.03
83 42 0.45
84 13 0.14
85 5 0.05
86 2 0.02
87 1 0.01
88 13 0.14
89 15 0.16
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.28
Consensus pattern (84 bp):
TCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTGTCTCACTGCAACTTCAGGAGGATAA
GACTTGATTCTTAATCCGC
Found at i:30557542 original size:216 final size:216
Alignment explanation
Indices: 30557153--30558058 Score: 1260
Period size: 216 Copynumber: 4.2 Consensus size: 216
30557143 ATTCCTTCCT
* * * * * ** *
30557153 ACTGCATCTTCAGAG-GATAGGAATTAGTGCTTCAATCTAATCCACTGCAACTTCAGGGAGATAA
1 ACTGCAACTTCAGGGAGATAGGATTTTG-GCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAA
* * * *
30557217 GACTTGCCATCTTCAGTCTGTCTCACTGCAACTTCAGGAGGATAAGACTTGCTTCCTTAGTCTGC
65 GATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGC
*
30557282 TCCACTGCAACTTCA-GGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
130 TCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
* *
30557346 ATCTGTGATTTTAATCCGCTCT
195 ATCTGTAATTTTAATCCGCTCC
* * *
30557368 ACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATTTGCTCCACTGCAACTTTAGGGAGATAA
1 ACTGCAACTTCAGGGAGATAGGATT-TTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAA
30557433 GATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTG-
65 GATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGC
* * *
30557497 TCCACCGCAACTTCAGGGAGATAAGACTAGATGTGATCTGCTCTCTGTAAATTCAGAGAGATAAG
130 TCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAG
30557562 ATCTGTAATTTTAATCCGCTCC
195 ATCTGTAATTTTAATCCGCTCC
* * *
30557584 ACTGCAACTTTAGGGAGATAGGATTGTCGGCTTTAATCTGCTCCACTGCGACTTCAGGAAGATAA
1 ACTGCAACTTCAGGGAGATAGGATT-TTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAA
* *
30557649 GATTTTCCATCTTCAGTCTG-CTCACTGTAACTTTAGGA-GATAAGACTTGCTTACTTAGTCTTG
65 GATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTC-TG
* *
30557712 -TCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTTTCTGTAACTTCAGAG-GATAG
129 CTCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATA-
*
30557775 AGATCTGTAATTTTAATCCGTTCC
193 AGATCTGTAATTTTAATCCGCTCC
* * * *
30557799 ACTGCAACTTCAGGGAG--A-GATTGTCGCTTT-ATCTACTCCACTGCAACTTCAGGAAAATAAG
1 ACTGCAACTTCAGGGAGATAGGATTTTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAG
* * *
30557860 ATTTGCCATCTTCAGTCTGCCTCACTGTAACTTTAGAAGGATAAGACTTGCTTACTTAGTTTGCT
66 ATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
* * *
30557925 CTACTGCAGCTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGA-AGGATAAG
131 CCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGA-GATAAG
* *
30557989 ATCAGTGATTTTAATCCGCTCC
195 ATCTGTAATTTTAATCCGCTCC
* *
30558011 ACTGCAACTTCAGGGAGATAGGATTGGTCGACTTTAATCTGCTTCCAC
1 ACTGCAACTTCAGGGAGATAGGATT--TTGGCTTTAATCTGC-TCCAC
30558059 AATCTTGGAA
Statistics
Matches: 619, Mismatches: 55, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
210 46 0.07
211 24 0.04
212 115 0.19
213 5 0.01
214 27 0.04
215 144 0.23
216 242 0.39
217 6 0.01
218 5 0.01
219 5 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (216 bp):
ACTGCAACTTCAGGGAGATAGGATTTTGGCTTTAATCTGCTCCACTGCAACTTCAGGAAGATAAG
ATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACTTAGTCTGCT
CCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTGCAACTTCAGAGAGATAAGA
TCTGTAATTTTAATCCGCTCC
Found at i:30558368 original size:132 final size:130
Alignment explanation
Indices: 30558020--30558372 Score: 416
Period size: 132 Copynumber: 2.7 Consensus size: 130
30558010 CACTGCAACT
* * * * *
30558020 TCAGGGAGA-TAGGATTGGTCGACTTTAATCTGCTT-CCACAATCTTGGAAAGTAT--GATTTGT
1 TCAGGGAGACAAGGCTTGGT-GGCTTAAATCTGCTTCCCACTATCTTGGAAA-TATAAGATTTGT
* * *
30558081 CGTCTTCGATCTACTCACACTGCTTAGGGAG-TAAGATCTACAATCTTCAACCTACTCCGCTACT
64 CGTCTTCGATCTGCTCATACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCAGCTACT
30558145 GC
129 GC
* * * *
30558147 TCAGTGAAACAAGGCTT-G-GGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCA
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAATATAAGATTTGTCG
* * * * *
30558210 TCTTCGATCTGCTCACTATTGCTTAGGGAGATAAGATCTATAATTTTTCAACCTTCTCAGCTGCT
66 TCTTCGATCTGCTCA-TACTGCTTAGGGAGATAAGATCTACAA-TCTTCAACCTACTCAGCTACT
30558275 GC
129 GC
* *
30558277 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT-TTGGAAATATAAGATTCGCCG
1 TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAATATAAGATTTGTCG
*
30558341 TCTTCGATCTGCTCCATTACTACTTAGGGAGA
66 TCTTCGATCTGCT-CA-TACTGCTTAGGGAGA
30558373 CAAGGCTTGG
Statistics
Matches: 190, Mismatches: 26, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
125 15 0.08
126 14 0.07
127 30 0.16
128 17 0.09
129 11 0.06
130 34 0.18
131 31 0.16
132 38 0.20
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.32
Consensus pattern (130 bp):
TCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAATATAAGATTTGTCG
TCTTCGATCTGCTCATACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCAGCTACTGC
Found at i:30558379 original size:87 final size:86
Alignment explanation
Indices: 30558279--30558456 Score: 286
Period size: 87 Copynumber: 2.1 Consensus size: 86
30558269 GCTGCTGCTC
* *
30558279 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTAT-TTGGAAATATAAGATTCGCCGTC
1 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTT-CCACTATCTTGGAAAGATAAGATTCACCGTC
*
30558343 TTCGATCTGCTCCATTACTACTT
65 TTCGATCTGCTCCACTACTAC-T
*
30558366 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCACTATCTTGGAAAGATAAGATTCACTGTCT
1 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCACTATCTTGGAAAGATAAGATTCACCGTCT
*
30558431 TCGATCTGCTCCACTACTGCT
66 TCGATCTGCTCCACTACTACT
30558452 AGGGA
1 AGGGA
30558457 CATAAGATCT
Statistics
Matches: 85, Mismatches: 5, Indels: 3
0.91 0.05 0.03
Matches are distributed among these distances:
86 13 0.15
87 72 0.85
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.30
Consensus pattern (86 bp):
AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCACTATCTTGGAAAGATAAGATTCACCGTCT
TCGATCTGCTCCACTACTACT
Found at i:30558600 original size:129 final size:130
Alignment explanation
Indices: 30558366--30558605 Score: 387
Period size: 129 Copynumber: 1.9 Consensus size: 130
30558356 ATTACTACTT
**
30558366 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCACTATCTTGGAAAGATAAGATTCACTGTCT
1 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCACTATCTTGGAAAGATAAGATTCACCATCT
30558431 TCGATCTGCTCCACTACTGCTAGGGACATAAGATCTACAATCTTCAACTTCTCCGCTGTCTGCTC
66 TCGATCTGCTCCACTACTGCTAGGGACATAAGATCTACAATCTTCAACTTCTCCGCTGTCTGCTC
*
30558496 AGGGAGACAAGGCTTGGT-GCTTAAACTCTGCTTCCACTAT-TTGGAAAGAT-AGATTCGCCATC
1 AGGGAGACAAGGCTTGGTGGCTTAAA-TCTGCTTCCACTATCTTGGAAAGATAAGATTCACCATC
* * *
30558558 TTCGATCTGCTCCACTACTGTTTAGGGAGATAAGATCTACAATTTTCA
65 TTCGATCTGCTCCACTACTG-CTAGGGACATAAGATCTACAATCTTCA
30558606 CTGATCTGTT
Statistics
Matches: 102, Mismatches: 6, Indels: 5
0.90 0.05 0.04
Matches are distributed among these distances:
128 29 0.28
129 41 0.40
130 32 0.31
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (130 bp):
AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCACTATCTTGGAAAGATAAGATTCACCATCT
TCGATCTGCTCCACTACTGCTAGGGACATAAGATCTACAATCTTCAACTTCTCCGCTGTCTGCTC
Found at i:30564026 original size:95 final size:97
Alignment explanation
Indices: 30563855--30564043 Score: 280
Period size: 95 Copynumber: 2.0 Consensus size: 97
30563845 TGTACAATAA
30563855 ACTTTAAAAGAACATCCACTCATCCAAGATTTTAAGAAATCACACCCCAATACGTTAGGGACGAT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTTAAGAAATCACACCCCAATACGTTAGGGACGAT
*
30563920 TCCTTAGAATCCCAAACTCGAAATATTTCTTT
66 TCCTTAAAATCCCAAACTCGAAATATTTCTTT
*
30563952 ACTTTAAAAGAA-ATCCACTTTAT-CAAGA-TTTAAGAAATCACA-CCCAATACGTTAGGGCAC-
1 ACTTTAAAAGAACATCCAC-TCATCCAAGATTTTAAGAAATCACACCCCAATACGTTAGGG-ACG
* *
30564012 ATTCTTTTAAAATCCCAAACTCGGAATATTTC
64 ATTC-CTTAAAATCCCAAACTCGAAATATTTC
30564044 CTTATATATT
Statistics
Matches: 85, Mismatches: 4, Indels: 8
0.88 0.04 0.08
Matches are distributed among these distances:
94 19 0.22
95 40 0.47
96 11 0.13
97 15 0.18
ACGTcount: A:0.38, C:0.23, G:0.10, T:0.29
Consensus pattern (97 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTTAAGAAATCACACCCCAATACGTTAGGGACGAT
TCCTTAAAATCCCAAACTCGAAATATTTCTTT
Found at i:30565393 original size:20 final size:19
Alignment explanation
Indices: 30565344--30565434 Score: 78
Period size: 18 Copynumber: 4.7 Consensus size: 19
30565334 CCTCAGATGC
*
30565344 CATATCATATCTAAAGATTA
1 CATATCATATCT-AAGATTG
* *
30565364 TATATCA-CTCTAAGATTG
1 CATATCATATCTAAGATTG
* *
30565382 CATATCATA-CTCAGATTA
1 CATATCATATCTAAGATTG
*
30565400 CATAATCTATATCGTGAGATTG
1 CAT-ATC-ATATC-TAAGATTG
30565422 CATATCATATCTA
1 CATATCATATCTA
30565435 GAAGCATATC
Statistics
Matches: 56, Mismatches: 10, Indels: 11
0.73 0.13 0.14
Matches are distributed among these distances:
18 22 0.39
19 7 0.12
20 14 0.25
21 4 0.07
22 9 0.16
ACGTcount: A:0.37, C:0.18, G:0.09, T:0.36
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:30571644 original size:39 final size:40
Alignment explanation
Indices: 30571538--30571760 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
30571528 GCTCCTCGTT
*
30571538 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
30571578 CAAATGCCTCCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
30571618 CAAATGCCTTC-GGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
30571657 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
30571696 CAAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 C-AAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
30571738 CAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCG
30571761 ACATCATTCA
Statistics
Matches: 159, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 63 0.40
40 69 0.43
41 22 0.14
42 5 0.03
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:30571649 original size:79 final size:79
Alignment explanation
Indices: 30571538--30571760 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 79
30571528 GCTCCTCGTT
* * *
30571538 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTCCGGGACTTAACCCG
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCG
*
30571602 GATTTAGTAACTCGCA
64 GAATTAGTAACTCGCA
* *
30571618 CAAATGCCTTCGGACTTAACCCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
30571682 ATTAGTATCTCGCA
66 ATTAGTAACTCGCA
* * * * *
30571696 CAAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCC
1 C-AAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
30571760 G
63 G
30571761 ACATCATTCA
Statistics
Matches: 124, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
78 23 0.19
79 48 0.39
80 37 0.30
81 16 0.13
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
ATTAGTAACTCGCA
Found at i:30577760 original size:44 final size:43
Alignment explanation
Indices: 30577701--30577854 Score: 143
Period size: 44 Copynumber: 3.5 Consensus size: 43
30577691 TAACAGATCG
*
30577701 TATCTCCTTGAAGTTGTAGTGGAGCAGACT-AAGTAGGCAAGTCT
1 TATCTCC-TGAAGTTGCAGTGGAGCAGACTAAAGTAGGCAA-TCT
* * *
30577745 TATCCTCCTGAAGTTGCAGT-GAGGTAGACTGAAG-ATTGCAAATCT
1 TAT-CTCCTGAAGTTGCAGTGGA-GCAGACTAAAGTA-GGC-AATCT
* * * *
30577790 TATCTCCCTTAAGTTGCAGTGGAGCAGATTAAAGTCGGTAATCT
1 TATCT-CCTGAAGTTGCAGTGGAGCAGACTAAAGTAGGCAATCT
30577834 TATCTCGCTGAAGTTGCAGTG
1 TATCTC-CTGAAGTTGCAGTG
30577855 AGCGGATTAA
Statistics
Matches: 90, Mismatches: 11, Indels: 18
0.76 0.09 0.15
Matches are distributed among these distances:
43 3 0.03
44 46 0.51
45 37 0.41
46 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
TATCTCCTGAAGTTGCAGTGGAGCAGACTAAAGTAGGCAATCT
Found at i:30578029 original size:172 final size:172
Alignment explanation
Indices: 30577740--30578455 Score: 1078
Period size: 172 Copynumber: 4.2 Consensus size: 172
30577730 TAAGTAGGCA
* * *
30577740 AGTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATTGCAAATCTTATCTCCCTTAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * *
30577805 GCAGTGGAGCAGATTAAAGTCGGTAATCTTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
66 GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
* * *
30577870 TAGATCTTATTTCTCTGAAGTTACAGAGAGCATATCGCATCT
131 TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* * *
30577912 AGCCTTATCCTCCTGACGTTGCAGTGAGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * * * * *
30577977 GTAGTGAAGCAAATTAAAGCCGGTAATTCTATCTCACTGAAGTTGCAGTGAGCGGATTAAAACCT
66 GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
*
30578042 TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCGTCT
131 TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
* *
30578084 AGTCTTATCCTTCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCGCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* * * *
30578149 GCAGTGGAGTAGATTAAAGCCGATAATCCTATCTCGCTAAAGTTGTAGTGAGCAGATTAAAACCT
66 GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
30578214 TAGATCTTATCTCTCTGATA-TTGCAGAGAGCAGATCGCATCT
131 TAGATCTTATCTCTCTGA-AGTTGCAGAGAGCAGATCGCATCT
*
30578256 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGGCTGAAGATGGCAAATCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* *
30578321 GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTC-CTGAAGTTGTAAGTGGAGTGGATTAAAA
66 GCAGTGGAGCAGATTAAAGCCGATAATCCTATC-TCGCTGAAGTTG-CAGT-GAGCGGATTAAAA
* * * *
30578385 CCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGTATTT
128 CCTTAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
30578430 AGTCTTAT-CTCCCTGAAGTTGCAGTG
1 AGTCTTATCCT-CCTGAAGTTGCAGTG
30578456 GAGCAGATTA
Statistics
Matches: 495, Mismatches: 43, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
172 413 0.83
173 9 0.02
174 73 0.15
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (172 bp):
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACCT
TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
Found at i:30578399 original size:45 final size:44
Alignment explanation
Indices: 30578301--30578516 Score: 113
Period size: 45 Copynumber: 4.9 Consensus size: 44
30578291 GAAGATGGCA
* * *
30578301 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
1 AATCTTATCTTCCTGAAGTTGAAGTGGAGCAGATTAAAACCGAT
* ** *
30578345 AATCCTATCTTCCTGAAGTTGTAAGTGGAGTGGATTAAAACC-TT
1 AATCTTATCTTCCTGAAGTTG-AAGTGGAGCAGATTAAAACCGAT
* * * * *** **
30578389 GGATCTTATC-TCTCTGAAGTTGCAG-AGAGTAGA-TCGTA--TTT
1 -AATCTTATCTTC-CTGAAGTTGAAGTGGAGCAGATTAAAACCGAT
* * * *
30578430 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
1 AATCTTATCTTCCTGAAGTTGAAGTGGAGCAGATTAAAACCGAT
* * **
30578474 AAT-TCTATCTTTTCCTAAAGTTGCAGTGGAGTGGATTAAAACC
1 AATCT-TATC--TTCCTGAAGTTGAAGTGGAGCAGATTAAAACC
30578517 TTGGATCTTA
Statistics
Matches: 128, Mismatches: 32, Indels: 22
0.70 0.18 0.12
Matches are distributed among these distances:
40 19 0.15
41 9 0.07
42 3 0.02
43 7 0.05
44 31 0.24
45 32 0.25
46 27 0.21
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (44 bp):
AATCTTATCTTCCTGAAGTTGAAGTGGAGCAGATTAAAACCGAT
Found at i:30578553 original size:130 final size:129
Alignment explanation
Indices: 30578303--30578589 Score: 495
Period size: 130 Copynumber: 2.2 Consensus size: 129
30578293 AGATGGCAAA
*
30578303 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTGAAGTTGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTAAAGTTGTA
*
30578368 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGTATTTAG
66 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
*
30578432 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATTCTATCTTTTCCTAAAGTTG
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATC--TTCCTAAAGTTG
*
30578497 -CAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTA
64 TAAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTA
30578561 G
129 G
*
30578562 TCTTATCTCCTTGAAAGTTGCAGTGGAG
1 TCTTATCTCCCTG-AAGTTGCAGTGGAG
30578590 TAGGCTAAAG
Statistics
Matches: 150, Mismatches: 5, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
129 50 0.33
130 75 0.50
131 25 0.17
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (129 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTAAAGTTGTA
AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
Found at i:30578570 original size:344 final size:344
Alignment explanation
Indices: 30577740--30578552 Score: 1019
Period size: 344 Copynumber: 2.4 Consensus size: 344
30577730 TAAGTAGGCA
* * * * *
30577740 AGTCTTATCCTCCTGAAGTTGCAGTGAGGTAGACTGAAGATTG-CAAATCTTATCTCCCTTAAGT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTAAAGA-CGACAAATCTTATCGCCCTAAAGT
* ** * * * * *
30577804 TGCAGTGGAGCAGATTAAAGTCGGTAATCTTATCTCGCTGAAGTTGCAGTGAGCGGATTAAAACC
65 TGCAGTGGAGTAGATTAAAACCGATAATCCTATCTCGCTAAAGTTGCAGAGAGCAGATTAAAACC
* * *
30577869 TTAGATCTTATTTCTCTGAAGTTACAGAGAGCATATCGCATCTAGCCTTATCCTCCTGACGTTGC
130 TTAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGCCTTATCCTCCTGAAGTTGC
* *
30577934 AGTGAGGTAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGTAGTGAAGCAAATTAAAGCCG
195 AGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTAAAGCCG
* * *
30577999 GTAATTCTATCTCACTGAAGTTGCAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
260 ATAATCCTATCTCACTGAAGTTGAAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTT
*
30578064 GCAGAGAGCAGATCGCGTCT
325 GCAGAGAGCAGATCGCATCT
* * * * *
30578084 AGTCTTATCCTTCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCAAATCTTATCGCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTAAAGACGACAAATCTTATCGCCCTAAAGTT
* * *
30578149 GCAGTGGAGTAGATTAAAGCCGATAATCCTATCTCGCTAAAGTTGTAGTGAGCAGATTAAAACCT
66 GCAGTGGAGTAGATTAAAACCGATAATCCTATCTCGCTAAAGTTGCAGAGAGCAGATTAAAACCT
* *
30578214 TAGATCTTATCTCTCTGATA-TTGCAGAGAGCAGATCGCATCTAGTCTTATCCTCCTGAAGTTGC
131 TAGATCTTATCTCTCTGA-AGTTACAGAGAGCAGATCGCATCTAGCCTTATCCTCCTGAAGTTGC
* * *
30578278 AGTGAGGCAGGCTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG
195 AGTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTAAAGCCG
* *
30578343 ATAATCCTATCTTC-CTGAAGTTGTAAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAA
260 ATAATCCTATC-TCACTGAAGTTG-AAGT-GAGCGGATTAAAACCTTAGATCTTATCTCTCTGAA
* * *
30578407 GTTGCAGAGAGTAGATCGTATTT
322 GTTGCAGAGAGCAGATCGCATCT
* * * * **
30578430 AGTCTTAT-CTCCCTGAAGTTGCAGTG-GAGCAGATTAAAGCCGATAATTC-TATCTTTTCCTAA
1 AGTCTTATCCT-CCTGAAGTTGCAGTGAG-GCAGACTAAAGACGACAAATCTTATC--GCCCTAA
* * * * * *
30578492 AGTTGCAGTGGAGTGGATTAAAACC-TTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGAT
62 AGTTGCAGTGGAGTAGATTAAAACCGAT-AATCCTATCTCGCTAAAGTTGCAGAGAGCAGAT
30578553 CGTATTTAGT
Statistics
Matches: 409, Mismatches: 50, Indels: 17
0.86 0.11 0.04
Matches are distributed among these distances:
343 2 0.00
344 251 0.61
345 13 0.03
346 89 0.22
347 54 0.13
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (344 bp):
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTAAAGACGACAAATCTTATCGCCCTAAAGTT
GCAGTGGAGTAGATTAAAACCGATAATCCTATCTCGCTAAAGTTGCAGAGAGCAGATTAAAACCT
TAGATCTTATCTCTCTGAAGTTACAGAGAGCAGATCGCATCTAGCCTTATCCTCCTGAAGTTGCA
GTGAGGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGAAGCAAATTAAAGCCGA
TAATCCTATCTCACTGAAGTTGAAGTGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTG
CAGAGAGCAGATCGCATCT
Found at i:30578629 original size:130 final size:127
Alignment explanation
Indices: 30578303--30578630 Score: 453
Period size: 130 Copynumber: 2.5 Consensus size: 127
30578293 AGATGGCAAA
* * *
30578303 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTTCCTGAAGTTGTA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCTAT-TTCCTATCTTCCTGAAGTTG-C
*
30578368 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGTAGATCGTATTTAG
64 AGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
* *
30578432 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATT-CTATCTTTTCCTAAAGTT
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC--TATTTCCTATC--TTCCTGAAGTT
30578496 GCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTA
62 GCAGTGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTA
30578561 G
127 G
* * ** *
30578562 TCTTATCTCCTTGAAAGTTGCAGTGGAGTAGGCTAAAGCACTAGTTTCCTATACTT-CTGAAGAT
1 TCTTATCTCCCTG-AAGTTGCAGTGGAGCAGATTAAAGC-CTA-TTTCCTAT-CTTCCTGAAGTT
30578626 GCAGT
62 GCAGT
30578631 ATGAAGGAAT
Statistics
Matches: 177, Mismatches: 13, Indels: 17
0.86 0.06 0.08
Matches are distributed among these distances:
129 44 0.25
130 89 0.50
131 38 0.21
132 5 0.03
133 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.33
Consensus pattern (127 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCTATTTCCTATCTTCCTGAAGTTGCAG
TGGAGTGGATTAAAACCTTGGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGTATTTAG
Found at i:30580536 original size:98 final size:98
Alignment explanation
Indices: 30580362--30580558 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
30580352 GTACAATAAA
*
30580362 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
30580427 CCTCTAGAATCCCAAACTCGAAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
*
30580460 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
30580525 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
30580558 A
1 A
30580559 TTATTTTTAA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
Found at i:30581880 original size:19 final size:19
Alignment explanation
Indices: 30581856--30581930 Score: 96
Period size: 19 Copynumber: 3.8 Consensus size: 19
30581846 AATCATATAT
30581856 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
30581875 TCTAAGATTGCATATATGATA
1 TCTAAGATTGC--ATATCATA
** *
30581896 TCTTGGGTTGCATATCATA
1 TCTAAGATTGCATATCATA
30581915 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
30581931 CTCAAAAATT
Statistics
Matches: 46, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
19 31 0.67
21 15 0.33
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:30582246 original size:44 final size:43
Alignment explanation
Indices: 30582145--30582991 Score: 388
Period size: 44 Copynumber: 19.5 Consensus size: 43
30582135 TTCAATCTAA
*
30582145 TCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTG-
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-CTTCTT-AGTCTGC
30582189 TCTCACTGCAACTTCA-GGAGGATAAGACTTGCTTCCTTAGTCTGC
1 TC-CACTGCAACTTCAGGGA-GATAAGACTTGCTT-CTTAGTCTGC
* * * *
30582234 TCCACTGCAACTTCAGGGAGATAAGACTAGATGC-GA-TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCTTCTTAGTCTGC
* * * * *
30582275 T-CTCTGCAACTTCAGAGAGATAAGATCTGTGATT-TTAATCCGC
1 TCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTCTTAGTCTGC
* * * * *
30582318 TCTACTGCAACTTCAGGGAGATAGGA-TT-ATTGGCTTTAATTTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCTT--C-TTAGTCTGC
* * *
30582362 TCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-CTTCTT-AGTCTGC
*
30582407 -CTCACTGTAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCTTG-
1 TC-CACTGCAACTTCAGGGA-GATAAGACTTGCTT-CTTAGTC-TGC
* * * * *
30582451 TCCACCGCAACTTCAGGGAGATAAGACTAG-ATGTGA-TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCTTCTTAGTCTGC
* * * * ** * *
30582492 T-CTCTGTAAATTCAGAGAGATAAGATCTGTAATT-TTAATCCGC
1 TCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTCTTAGTCTGC
* * ** *
30582535 TCCACTGCAACTTTAGGGAGATAGGA-TTGTCGGCTTTAATCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-CTTC-TTAGTCTGC
* * * * *
30582579 TCCACTGCGACTTCAGGAAGATAAGATTTTCCATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGA-CTTGCTTCTT-AGTCTGC
* *
30582624 -CTCACTGTAACTTTA-GGAGGATAAGACTTGCTTACTTAGTCTTG-
1 TC-CACTGCAACTTCAGGGA-GATAAGACTTGCTT-CTTAGTC-TGC
* * * * *
30582668 TCCACCGCAACTTCAGGGAGATAAGACTAGATGC-GA-TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCTTCTTAGTCTGC
** * * ** * * *
30582709 T-TTCTGTAACTTCAGAGAGATAAGATCTGTAATT-TTAATCCGT
1 TCCACTGCAACTTCAGGGAGATAAGA-CT-TGCTTCTTAGTCTGC
* ** * *
30582752 TCCACTGCAACTTCAGGGAGATAGGA-TTGTCGGCTTTAATCTAC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-CTTC-TTAGTCTGC
* * * *
30582796 TCCACTGCAACTTCAGGAAAATAAGATTTGCCATCTTCAGTCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTG-CTTCTT-AGTCTGC
* * * *
30582841 -CTCACTGTAACTTTA-GAAGGATAAGACTTGCTTACTTAGTTTGC
1 TC-CACTGCAACTTCAGGGA-GATAAGACTTGCTT-CTTAGTCTGC
* * * * * *
30582885 TCTACTGCAGCTTCAGGGAGATAAGACTAGATGC-GA-TCTGC
1 TCCACTGCAACTTCAGGGAGATAAGACTTGCTTCTTAGTCTGC
* * * * * *
30582926 T-CTCTGCAACTTCA-GAAGGATAAGATCAGTGATT-TTAATCCGC
1 TCCACTGCAACTTCAGGGA-GATAAGA-C-TTGCTTCTTAGTCTGC
30582969 TCCACTGCAACTTCAGGGAGATA
1 TCCACTGCAACTTCAGGGAGATA
30582992 GGATTGTCGA
Statistics
Matches: 603, Mismatches: 135, Indels: 130
0.69 0.16 0.15
Matches are distributed among these distances:
39 2 0.00
40 84 0.14
41 27 0.04
42 21 0.03
43 24 0.04
44 300 0.50
45 142 0.24
46 2 0.00
47 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (43 bp):
TCCACTGCAACTTCAGGGAGATAAGACTTGCTTCTTAGTCTGC
Found at i:30582329 original size:84 final size:86
Alignment explanation
Indices: 30582145--30582774 Score: 231
Period size: 84 Copynumber: 7.3 Consensus size: 86
30582135 TTCAATCTAA
*
30582145 TCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGTCTCACTGCAACTTCAGGAGG
1 TCCACTGCAACTTCAGGGAGATAAGACTAG-CATC-TCAGTCTGTCTCACTGCAACTTCAGGAGG
* * *
30582210 ATAAGACTTGCTTCCTTAGTCTGC
64 ATAAGACTTGATT-CTTAATCCGC
* *
30582234 TCCACTGCAACTTCAGGGAGATAAGACTAG-AT-GC-GATCTG-CTCTCTGCAACTTCA-GAGAG
1 TCCACTGCAACTTCAGGGAGATAAGACTAGCATCTCAG-TCTGTCTCACTGCAACTTCAGGAG-G
30582294 ATAAGATCTGTGATT-TTAATCCGC
64 ATAAGA-CT-TGATTCTTAATCCGC
* * * * * * *
30582318 TCTACTGCAACTTCAGGGAGATAGGATTATTGGC-T-TTAATTTG-CTCCACTGCAACTTTAGG-
1 TCCACTGCAACTTCAGGGAGATAAGACTA---GCATCTCAGTCTGTCT-CACTGCAACTTCAGGA
* * *
30582379 GAGATAAGATTTGCCA-TCTTCAGTCTGC
62 G-GATAAGACTTG--ATTCTT-AATCCGC
* * * * *
30582407 -CTCACTGTAACTTCA-GGAGGATAAGACTTGCTTACTTAGTCTTGTC-CACCGCAACTTCAGG-
1 TC-CACTGCAACTTCAGGGA-GATAAGACTAGCAT-CTCAGTC-TGTCTCACTGCAACTTCAGGA
* * * *
30582468 GAGATAAGACTAGA-T-GTGATCTGC
62 G-GATAAGACTTGATTCTTAATCCGC
* * * * * * * * * *
30582492 T-CTCTGTAAATTCAGAGAGATAAGATCT-GTAATTTTAATCCG-CTCCACTGCAACTTTAGG-G
1 TCCACTGCAACTTCAGGGAGATAAGA-CTAG-CATCTCAGTCTGTCT-CACTGCAACTTCAGGAG
* * *
30582553 AGATAGGA-TTG-TCGGCTTTAATCTGC
63 -GATAAGACTTGAT--TC-TTAATCCGC
* * * ** * * *
30582579 TCCACTGCGACTTCAGGAAGATAAGATTTTCCATCTTCAGTCTGCCTCACTGTAACTTTAGGAGG
1 TCCACTGCAACTTCAGGGAGATAAGA-CTAGCATC-TCAGTCTGTCTCACTGCAACTTCAGGAGG
* * *
30582644 ATAAGACTTGCTTACTTAGTCTTG-
64 ATAAGACTTGATT-CTTAATC-CGC
* * ** *
30582668 TCCACCGCAACTTCAGGGAGATAAGACTAG-AT-GC-GATCTG-CTTTCTGTAACTTCA-GAGAG
1 TCCACTGCAACTTCAGGGAGATAAGACTAGCATCTCAG-TCTGTCTCACTGCAACTTCAGGAG-G
* *
30582728 ATAAGATCTGTAATT-TTAATCCGT
64 ATAAGA-CT-TGATTCTTAATCCGC
30582752 TCCACTGCAACTTCAGGGAGATA
1 TCCACTGCAACTTCAGGGAGATA
30582775 GGATTGTCGG
Statistics
Matches: 415, Mismatches: 79, Indels: 99
0.70 0.13 0.17
Matches are distributed among these distances:
82 1 0.00
83 10 0.02
84 147 0.35
85 24 0.06
86 12 0.03
87 24 0.06
88 50 0.12
89 134 0.32
90 11 0.03
91 2 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (86 bp):
TCCACTGCAACTTCAGGGAGATAAGACTAGCATCTCAGTCTGTCTCACTGCAACTTCAGGAGGAT
AAGACTTGATTCTTAATCCGC
Found at i:30582477 original size:217 final size:218
Alignment explanation
Indices: 30582145--30583018 Score: 1398
Period size: 217 Copynumber: 4.0 Consensus size: 218
30582135 TTCAATCTAA
* * * *
30582145 TCCACTGCAACTTCAGGGAGATAAGACTTGCCATCTTCAGTCTGTCTCACTGCAACTTCAGGAGG
1 TCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGG
* *
30582210 ATAAGACTTGCTTCCTTAGTC-TGCTCCACTGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
66 ATAAGACTTGCTTACTTAGTCTTGCTCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
* *
30582274 CTCTCTGCAACTTCAGAGAGATAAGATCTGTGATTTTAATCCGCTCTACTGCAACTTCAGGGAGA
131 CTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGA
* * *
30582339 TAGGATTATTGGCTTTAATTTGC
196 TAGGATTGTCGGCTTTAATCTGC
* *
30582362 TCCACTGCAACTTTAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGG
1 TCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGG
*
30582427 ATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACTAGATGTGATCTG
66 ATAAGACTTGCTTACTTAGTCTTGCTCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
* * *
30582491 CTCTCTGTAAATTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTTAGGGAGA
131 CTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGA
30582556 TAGGATTGTCGGCTTTAATCTGC
196 TAGGATTGTCGGCTTTAATCTGC
* * *
30582579 TCCACTGCGACTTCAGGAAGATAAGATTTTCCATCTTCAGTCTGCCTCACTGTAACTTTAGGAGG
1 TCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGG
30582644 ATAAGACTTGCTTACTTAGTCTTG-TCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
66 ATAAGACTTGCTTACTTAGTCTTGCTCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
* * *
30582708 CTTTCTGTAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGTTCCACTGCAACTTCAGGGAGA
131 CTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGA
*
30582773 TAGGATTGTCGGCTTTAATCTAC
196 TAGGATTGTCGGCTTTAATCTGC
* * *
30582796 TCCACTGCAACTTCAGGAAAATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTTAGAAGG
1 TCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGG
* * *
30582861 ATAAGACTTGCTTACTTAGT-TTGCTCTACTGCAGCTTCAGGGAGATAAGACTAGATGCGATCTG
66 ATAAGACTTGCTTACTTAGTCTTGCTCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
* *
30582925 CTCTCTGCAACTTCAGA-AGGATAAGATCAGTGATTTTAATCCGCTCCACTGCAACTTCAGGGAG
131 CTCTCTGCAACTTCAGAGA-GATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAGGGAG
*
30582989 ATAGGATTGTCGACTTTAATCTGC
195 ATAGGATTGTCGGCTTTAATCTGC
30583013 TTCCAC
1 -TCCAC
30583019 AATCTTGGAA
Statistics
Matches: 613, Mismatches: 40, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
216 4 0.01
217 602 0.98
218 7 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (218 bp):
TCCACTGCAACTTCAGGAAGATAAGATTTGCCATCTTCAGTCTGCCTCACTGTAACTTCAGGAGG
ATAAGACTTGCTTACTTAGTCTTGCTCCACCGCAACTTCAGGGAGATAAGACTAGATGCGATCTG
CTCTCTGCAACTTCAGAGAGATAAGATCTGTAATTTTAATCCGCTCCACTGCAACTTCAGGGAGA
TAGGATTGTCGGCTTTAATCTGC
Found at i:30583171 original size:132 final size:132
Alignment explanation
Indices: 30583006--30583339 Score: 508
Period size: 132 Copynumber: 2.5 Consensus size: 132
30582996 TGTCGACTTT
* * *
30583006 AATCTGCTT-CCACAATCTTGGAAAGATATGATTTGTCGTCTTCGATCTACTCCACTACTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
* *
30583070 GGGAGATAAGATCTACAATCTTCAACCTACTCCGCTACTGCTCAGTGAAACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTACTCAGCTACTGCTCAGGGAAACAAGGCTTGGTGGCT
30583135 TA
131 TA
* *
30583137 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCATCTTCGATCTGCTCCACTATTGCTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
* * * * *
30583202 GGGAGATAAGATCTATAATTTTCAACCTTCTCAGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCT
66 GGGAGATAAGATCTACAATCTTCAACCTACTCAGCTACTGCTCAGGGAAACAAGGCTTGGTGGCT
30583267 TA
131 TA
* * * * *
30583269 AATCTGCTTCCCACTATCTTGGAAATATAAGATTCGCCGTCTTCGATCTGCTCCATTACTACTTA
1 AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
30583334 GGGAGA
66 GGGAGA
30583340 CAAGGCTTGG
Statistics
Matches: 183, Mismatches: 19, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
131 9 0.05
132 174 0.95
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.32
Consensus pattern (132 bp):
AATCTGCTTCCCACTATCTTGGAAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGCTTA
GGGAGATAAGATCTACAATCTTCAACCTACTCAGCTACTGCTCAGGGAAACAAGGCTTGGTGGCT
TA
Found at i:30583344 original size:88 final size:88
Alignment explanation
Indices: 30583245--30583425 Score: 317
Period size: 88 Copynumber: 2.1 Consensus size: 88
30583235 GCTGCTGCTC
* *
30583245 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAATATAAGATTCGCCGTC
1 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTC
*
30583310 TTCGATCTGCTCCATTACTACTT
66 TTCGATCTGCTCCACTACTACTT
*
30583333 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACTGTC
1 AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTC
*
30583398 TTCGATCTGCTCCACTACTGCTT
66 TTCGATCTGCTCCACTACTACTT
30583421 AGGGA
1 AGGGA
30583426 CATAAGATCT
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 88 1.00
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.30
Consensus pattern (88 bp):
AGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACCGTC
TTCGATCTGCTCCACTACTACTT
Found at i:30583371 original size:220 final size:220
Alignment explanation
Indices: 30583119--30583559 Score: 749
Period size: 220 Copynumber: 2.0 Consensus size: 220
30583109 GCTCAGTGAA
**
30583119 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATT-TGTCATCTTCGA
1 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACT-ATCTTCGA
* * * *
30583183 TCTGCTCCACTATTGCTTAGGGAGATAAGATCTATAATTTTCAACCTTCTCAGCTGCTGCTCAGG
65 TCTGCTCCACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTTCTCAGCTGCTGCTCAGG
* *
30583248 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAATATAAGATTCGCCGTCTTC
130 GAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCATCTTC
*
30583313 GATCTGCTCCATTACTACTTAGGGAG
195 GATCTGCTCCACTACTACTTAGGGAG
*
30583339 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACTGTCTTCGAT
1 ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACTATCTTCGAT
*
30583404 CTGCTCCACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTTCTCCGCTGCTGCTCAGGG
66 CTGCTCCACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTTCTCAGCTGCTGCTCAGGG
30583469 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCATCTTCG
131 AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCATCTTCG
**
30583534 ATCTGCTCCACTACTGTTTAGGGAG
196 ATCTGCTCCACTACTACTTAGGGAG
30583559 A
1 A
30583560 TAAGATCTAC
Statistics
Matches: 207, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
220 206 1.00
221 1 0.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (220 bp):
ACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACTATCTTCGAT
CTGCTCCACTACTGCTTAGGGACATAAGATCTACAATCTTCAACCTTCTCAGCTGCTGCTCAGGG
AGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCATCTTCG
ATCTGCTCCACTACTACTTAGGGAG
Found at i:30583406 original size:44 final size:44
Alignment explanation
Indices: 30583270--30583408 Score: 115
Period size: 44 Copynumber: 3.2 Consensus size: 44
30583260 GGTGGCTTAA
* *
30583270 ATCTGCTTCCCACTATCTTGGAAATATAAGATTCGCCGTCTTCG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCG
* * * * * * **
30583314 ATCTGC-T-CCATTACTACTTAGG-GAGACAAGGCTT-GGTGGCTTAA
1 ATCTGCTTCCCACTA-T-CTT-GGAAAGATAA-GATTCGCTGTCTTCG
*
30583358 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTCACTGTCTTCG
1 ATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCG
30583402 ATCTGCT
1 ATCTGCT
30583409 CCACTACTGC
Statistics
Matches: 68, Mismatches: 19, Indels: 16
0.66 0.18 0.16
Matches are distributed among these distances:
42 5 0.07
43 7 0.10
44 44 0.65
45 7 0.10
46 5 0.07
ACGTcount: A:0.24, C:0.24, G:0.19, T:0.33
Consensus pattern (44 bp):
ATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCTGTCTTCG
Found at i:30583406 original size:132 final size:133
Alignment explanation
Indices: 30583316--30583577 Score: 384
Period size: 132 Copynumber: 2.0 Consensus size: 133
30583306 CGTCTTCGAT
* *
30583316 CTGCTCCATTACTACTTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAA
1 CTGCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAA
** *
30583381 AGATAAGATTCACTGTCTTCGATCTGC-TCCACTACTGCTTAGGGACATAAGATCTACAATCTTC
66 AGATAAGATTCACCATCTTCGATCTGCTTCCACTACTGCTTAGGAACATAAGATCTACAATCTTC
30583445 AAC
131 AAC
* * * *
30583448 CTTCTCCGCTGCTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAA
1 CTGCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAA
* * * * *
30583513 AGATAAGATTCGCCATCTTCGATCTGC-TCCACTACTGTTTAGGGAGATAAGATCTACAATTTTC
66 AGATAAGATTCACCATCTTCGATCTGCTTCCACTACTGCTTAGGAACATAAGATCTACAATCTTC
30583577 A
131 A
30583578 CTGATCTGTT
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 118 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (133 bp):
CTGCTCCACTACTACTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAA
AGATAAGATTCACCATCTTCGATCTGCTTCCACTACTGCTTAGGAACATAAGATCTACAATCTTC
AAC
Found at i:30589100 original size:98 final size:98
Alignment explanation
Indices: 30588926--30589122 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
30588916 GTACAATAAA
*
30588926 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
30588991 CCTCTAGAATCCCAAACTCGAAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
*
30589024 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* *
30589089 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
66 CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
30589122 A
1 A
30589123 TTATTTTTAA
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.27
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTCATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTCTAAAATCCCAAACTCGAAATATTTCCTTT
Found at i:30590450 original size:19 final size:19
Alignment explanation
Indices: 30590426--30590538 Score: 154
Period size: 19 Copynumber: 5.8 Consensus size: 19
30590416 AATCATATAT
30590426 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
30590445 TCTAAGATTATATATCATC
1 TCTAAGATTGCATATCATA
30590464 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
30590483 TCTAAGATTACATATATCATA
1 TCTAAGATTGC--ATATCATA
**
30590504 TCTTGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
30590523 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
30590539 CTCAAAAATT
Statistics
Matches: 80, Mismatches: 12, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
19 64 0.80
21 16 0.20
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:30590513 original size:40 final size:39
Alignment explanation
Indices: 30590426--30590537 Score: 172
Period size: 40 Copynumber: 2.8 Consensus size: 39
30590416 AATCATATAT
*
30590426 TCTAAGATTGCATATCATATCTAAGATT-ATATATCATC
1 TCTAAGATTGCATATCATATCTAAGATTCATATATCATA
30590464 TCTAAGATTGCATATCATATCTAAGATTACATATATCATA
1 TCTAAGATTGCATATCATATCTAAGATT-CATATATCATA
**
30590504 TCTTGGATTGCATATCATATCTAAGATTGCATAT
1 TCTAAGATTGCATATCATATCTAAGATT-CATAT
30590538 CCTCAAAAAT
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
38 28 0.41
40 40 0.59
ACGTcount: A:0.36, C:0.15, G:0.10, T:0.39
Consensus pattern (39 bp):
TCTAAGATTGCATATCATATCTAAGATTCATATATCATA
Found at i:30595030 original size:3 final size:3
Alignment explanation
Indices: 30595022--30595048 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
30595012 GTCAAAGTTG
30595022 TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA
30595049 AGATGAATCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:30595559 original size:17 final size:18
Alignment explanation
Indices: 30595520--30595559 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
30595510 AATCTTCAAG
*
30595520 GATATGCAATCTTAAATAA
1 GATATGCAATCTT-AAGAA
30595539 GATATGCAATCTT-AGAA
1 GATATGCAATCTTAAGAA
30595556 GATA
1 GATA
30595560 AGATTTTGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 7 0.35
19 13 0.65
ACGTcount: A:0.45, C:0.10, G:0.15, T:0.30
Consensus pattern (18 bp):
GATATGCAATCTTAAGAA
Found at i:30596462 original size:24 final size:23
Alignment explanation
Indices: 30596357--30596539 Score: 112
Period size: 24 Copynumber: 7.9 Consensus size: 23
30596347 TATTGTATAT
* *
30596357 TATTATTTTAGATTTATCATGTTT
1 TATTATTTTAAATTTATCATG-TA
* *
30596381 TAGTATTTGT-AATTTATCA-ATA
1 TATTATTT-TAAATTTATCATGTA
*
30596403 TTATTATTTTAAATTCAT--TGTTAA
1 -TATTATTTTAAATTTATCATG-T-A
*
30596427 CATTATTTTAAATTTATCATGTA
1 TATTATTTTAAATTTATCATGTA
30596450 TATCTATTTTAAATTTATCAT-TA
1 TAT-TATTTTAAATTTATCATGTA
* *
30596473 -A-TATTTTTAAATTTATTATATA
1 TATTA-TTTTAAATTTATCATGTA
** *
30596495 CTATTATTTTGGATTTATCACGTA
1 -TATTATTTTAAATTTATCATGTA
*
30596519 TGATTATTCTAGAA-TTATCAT
1 T-ATTATTTTA-AATTTATCAT
30596540 CAAAATTTTT
Statistics
Matches: 123, Mismatches: 20, Indels: 32
0.70 0.11 0.18
Matches are distributed among these distances:
20 2 0.02
21 14 0.11
22 5 0.04
23 35 0.28
24 61 0.50
25 6 0.05
ACGTcount: A:0.33, C:0.07, G:0.06, T:0.55
Consensus pattern (23 bp):
TATTATTTTAAATTTATCATGTA
Found at i:30596665 original size:23 final size:23
Alignment explanation
Indices: 30596638--30596682 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
30596628 AATTGTACAT
* *
30596638 TCATATATATTATTTGTTTTAAC
1 TCATAAATATTATTTATTTTAAC
*
30596661 TCATAAATATTGTTTATTTTAA
1 TCATAAATATTATTTATTTTAA
30596683 AATTTTGAAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.07, G:0.04, T:0.56
Consensus pattern (23 bp):
TCATAAATATTATTTATTTTAAC
Found at i:30603171 original size:45 final size:45
Alignment explanation
Indices: 30603120--30603703 Score: 616
Period size: 45 Copynumber: 13.0 Consensus size: 45
30603110 TAAGTTGAAA
*
30603120 ATAGCAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
30603165 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* *
30603210 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAA
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* * *
30603255 ATAACAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* * * * *
30603300 ATATCAGATCTTATCTTTCTGTACTAGCAGCAAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* * * * * * *
30603345 ATACCAG-CCTTATCTCCCTG-A---GCAGCAGTAGAGTAGGTTGAAA
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGC-G-A-AGTAGATCGAAG
* * *
30603388 ATAGCAAATCTTATCTTCCTGTACTGGTAGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* * *
30603433 ATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAAT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* *
30603478 ATAGCAGATCTTATCTTCCTGTATTGGCAGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* * * * ** *
30603523 -TCA-CA-AGCCTTGTCTCCCTG-A---GCAGTAGTAGAGTAAGTTAAAAAA
1 AT-AGCAGA-TCTTGTCTTCCTGTACTGGCAG-CG-A-AGT-AGAT-CGAAG
* * * *
30603568 ATAGCAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCAAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* *
30603613 ATAGCAGATCTTGTCTTTCTGTATTGGCAGCGAAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
* * *
30603658 ATAGCAGATCTTGTCTTCCTGTACTAGTAGCGCAGTAGATCGAAG
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
30603703 A
1 A
30603704 CGGAAAATCT
Statistics
Matches: 454, Mismatches: 63, Indels: 44
0.81 0.11 0.08
Matches are distributed among these distances:
40 9 0.02
41 1 0.00
42 2 0.00
43 20 0.04
44 37 0.08
45 351 0.77
46 18 0.04
47 6 0.01
48 5 0.01
49 1 0.00
50 4 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (45 bp):
ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAG
Found at i:30603423 original size:178 final size:180
Alignment explanation
Indices: 30603210--30603703 Score: 724
Period size: 178 Copynumber: 2.8 Consensus size: 180
30603200 TAGATCGAAG
* *
30603210 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAACAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* * * *
30603275 GTATTGGTAGCGAAGTAGATCGAAGATATCAGATCTTATCTTTCTGTACTAGCAGCAAAGTAGAT
66 GTATTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTGTACTAGCAGCGAAGTAGAT
* * *
30603340 CGAAGAT-ACCAGCCTTATCTCCCTGAGCAGCAGTAGAGTAGGTT-GAAA
131 CGAAGATCACAAGCCTTATCTCCCTGAGCAGCAGTAGAGTAAGTTAAAAA
* * * *
30603388 ATAGCAAATCTTATCTTCCTGTACTGGTAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* * * *
30603453 GTATTGGCAGCGAAGTAGATCAAATATAGCAGATCTTATCTTCCTGTATTGGCAGCGAAGTAGAT
66 GTATTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTGTACTAGCAGCGAAGTAGAT
* *
30603518 CGAAG-TCACAAGCCTTGTCTCCCTGAGCAGTAGTAGAGTAAGTTAAAAAA
131 CGAAGATCACAAGCCTTATCTCCCTGAGCAGCAGTAGAGTAAGTT-AAAAA
* * * *
30603568 ATAGCAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTTCT
1 ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
* * *
30603633 GTATTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTAGTAGCGCAGTAGAT
66 GTATTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTGTACTAGCAGCGAAGTAGAT
30603698 CGAAGA
131 CGAAGA
30603704 CGGAAAATCT
Statistics
Matches: 278, Mismatches: 34, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
177 1 0.00
178 154 0.55
180 123 0.44
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (180 bp):
ATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTGTCTTCCT
GTATTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTATCTTCCTGTACTAGCAGCGAAGTAGAT
CGAAGATCACAAGCCTTATCTCCCTGAGCAGCAGTAGAGTAAGTTAAAAA
Found at i:30603508 original size:268 final size:268
Alignment explanation
Indices: 30603029--30603518 Score: 845
Period size: 268 Copynumber: 1.8 Consensus size: 268
30603019 CAGATCAGTA
*
30603029 AAGATATCAGATCTTGTCTTTCTGTACTAGAAGCAAAGTAGATCGAAAATACCAGCCTTATCTCC
1 AAGATATCAGATCTTATCTTTCTGTACTAGAAGCAAAGTAGATCGAAAATACCAGCCTTATCTCC
* * * * *
30603094 CTGAGCAGTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGA
66 CTGAGCAGCAGTAGAGTAAGTTGAAAATAGCAAATCTTATCTTCCTGTACTGGCAGCGAAGTAGA
* *
30603159 TCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGT
131 TCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTAT
30603224 CTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAACAGATCTTGTCTTCCTGTATTGGTAGCGAA
196 CTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAACAGATCTTGTCTTCCTGTATTGGTAGCGAA
30603289 GTAGATCG
261 GTAGATCG
* *
30603297 AAGATATCAGATCTTATCTTTCTGTACTAGCAGCAAAGTAGATCGAAGATACCAGCCTTATCTCC
1 AAGATATCAGATCTTATCTTTCTGTACTAGAAGCAAAGTAGATCGAAAATACCAGCCTTATCTCC
* *
30603362 CTGAGCAGCAGTAGAGTAGGTTGAAAATAGCAAATCTTATCTTCCTGTACTGGTAGCGAAGTAGA
66 CTGAGCAGCAGTAGAGTAAGTTGAAAATAGCAAATCTTATCTTCCTGTACTGGCAGCGAAGTAGA
* *
30603427 TCGAAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAATATAGCAGATCTTAT
131 TCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTAT
*
30603492 CTTCCTGTATTGGCAGCGAAGTAGATC
196 CTTCCTGTACTGGCAGCGAAGTAGATC
30603519 GAAGTCACAA
Statistics
Matches: 207, Mismatches: 15, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
268 207 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (268 bp):
AAGATATCAGATCTTATCTTTCTGTACTAGAAGCAAAGTAGATCGAAAATACCAGCCTTATCTCC
CTGAGCAGCAGTAGAGTAAGTTGAAAATAGCAAATCTTATCTTCCTGTACTGGCAGCGAAGTAGA
TCGAAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTAT
CTTCCTGTACTGGCAGCGAAGTAGATCAAAAATAACAGATCTTGTCTTCCTGTATTGGTAGCGAA
GTAGATCG
Found at i:30603578 original size:268 final size:267
Alignment explanation
Indices: 30603036--30603703 Score: 810
Period size: 268 Copynumber: 2.5 Consensus size: 267
30603026 GTAAAGATAT
* *
30603036 CAGATCTTGTCTTTCTGTACTAGAAGCAAAGTAGATCGAAAATACCAGCCTTATCTCCCTGAGCA
1 CAGATCTTGTCTTTCTGTACTAGCAGCAAAGTAGATCGAAGATACCAGCCTTATCTCCCTGAGCA
* * * * *
30603101 GTAGTGGAGTAAGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGCAGTGAAGTAGATCGAAGA
66 GCAGTAGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAGTAGATCGAAGA
* *
30603166 TAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTG
131 TAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTATCTTCCTG
* * * * * *
30603231 TACTGGCAGCGAAGTAGATCAAAAATAACAGATCTTGTCTTCCTGTATTGGTAGCGAAGTAGATC
196 TACTGGCAGCGAAGTAGATCAAAAATAACAGACCTTGTCTCCCTGCAGTAGTAGAGAAGTAGA-C
* * *
30603296 GAAGATAT
260 AAAAATAG
*
30603304 CAGATCTTATCTTTCTGTACTAGCAGCAAAGTAGATCGAAGATACCAGCCTTATCTCCCTGAGCA
1 CAGATCTTGTCTTTCTGTACTAGCAGCAAAGTAGATCGAAGATACCAGCCTTATCTCCCTGAGCA
* *
30603369 GCAGTAGAGTAGGTTGAAAATAGCAAATCTTATCTTCCTGTACTGGTAGCGAAGTAGATCGAAGA
66 GCAGTAGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAGTAGATCGAAGA
* *
30603434 TAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAATATAGCAGATCTTATCTTCCTG
131 TAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTATCTTCCTG
* * * *
30603499 TATTGGCAGCGAAGTAGATC-GAAGTCACA-AGCCTTGTCTCCCTGAGCAGTAGTAGAGTAAGTT
196 TACTGGCAGCGAAGTAGATCAAAAATAACAGA-CCTTGTCTCCCT--GCAGTAGTAGAG-AAG-T
30603562 A-A-AAAAATAG
256 AGACAAAAATAG
* * ** * * * * **
30603572 CAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTTTCTGTAT
1 CAGATCTTGTCTTTCTGTACTAGCAGCAAAGTAGATCGAAGATACCAG-CCTTATCTCCCTG-A-
* * * * *
30603637 TGGCAGC-G-A-AGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTAGTAGCGCAGTAGATC
63 --GCAGCAGTAGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAGTAGATC
30603699 GAAGA
126 GAAGA
30603704 CGGAAAATCT
Statistics
Matches: 345, Mismatches: 45, Indels: 18
0.85 0.11 0.04
Matches are distributed among these distances:
266 1 0.00
267 16 0.05
268 246 0.71
269 17 0.05
270 56 0.16
271 3 0.01
272 1 0.00
273 5 0.01
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (267 bp):
CAGATCTTGTCTTTCTGTACTAGCAGCAAAGTAGATCGAAGATACCAGCCTTATCTCCCTGAGCA
GCAGTAGAGTAGGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAGTAGATCGAAGA
TAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCAAAGATAGCAGATCTTATCTTCCTG
TACTGGCAGCGAAGTAGATCAAAAATAACAGACCTTGTCTCCCTGCAGTAGTAGAGAAGTAGACA
AAAATAG
Found at i:30603714 original size:135 final size:135
Alignment explanation
Indices: 30603029--30603703 Score: 662
Period size: 135 Copynumber: 5.0 Consensus size: 135
30603019 CAGATCAGTA
* * * * * *
30603029 AAGATATCAGATCTTGTCTTTCTGTACTAGAAGCAAAGTAGATCGAAA-ATACCAG-CCTTATCT
1 AAGATAGCAGATCTTGTCTTCCTGTACTAGCAGCGAAGTAGATC-AAAGATAGCAGATCTTATCT
* *** * * * * * *
30603092 CCCTG-AGCAGTAGTGGAGTA-AGTTGAAAATAGCAGATCTTGTCTTCCTGTACTGGCAGTGAAG
65 TCCTGTATTGGCAGCGAAGTAGA-TCGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAG
30603155 TAGATCG
129 TAGATCG
* * *
30603162 AAGATAGCAGATCTTGTCTTCCTGTACTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTT
1 AAGATAGCAGATCTTGTCTTCCTGTACTAGCAGCGAAGTAGATCAAAGATAGCAGATCTTATCTT
* * * *
30603227 CCTGTACTGGCAGCGAAGTAGATCAAAAATAACAGATCTTGTCTTCCTGTATTGGTAGCGAAGTA
66 CCTGTATTGGCAGCGAAGTAGATCGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAGTA
30603292 GATCG
131 GATCG
* * * * * * * *
30603297 AAGATATCAGATCTTATCTTTCTGTACTAGCAGCAAAGTAGATCGAAGATACCAG-CCTTATCTC
1 AAGATAGCAGATCTTGTCTTCCTGTACTAGCAGCGAAGTAGATCAAAGATAGCAGATCTTATCTT
* * * *
30603361 CCTG-A---GCAGCAGTAGAGTAGGTTGAAAATAGCAAATCTTATCTTCCTGTACTGGTAGCGAA
66 CCTGTATTGGCAGC-G-A-AGTAGATCGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAA
30603422 GTAGATCG
128 GTAGATCG
* * *
30603430 AAGATAGCAGATCTTGTCTTCCTGTATTGGCAGCGAAGTAGATCAAATATAGCAGATCTTATCTT
1 AAGATAGCAGATCTTGTCTTCCTGTACTAGCAGCGAAGTAGATCAAAGATAGCAGATCTTATCTT
* * * * *
30603495 CCTGTATTGGCAGCGAAGTAGATCG-AAGTCA-CA-AGCCTTGTCTCCCTG-AGCAGTAGTAGAG
66 CCTGTATTGGCAGCGAAGTAGATCGAAAAT-AGCAGA-TCTTGTCTTCCTGTA-C--TGGTAGCG
*
30603556 TAAGTTA-A--A
126 -AAG-TAGATCG
* * * *
30603565 AAAATAGCAGATCTTGTCTTCCTGTATTAGCAGTGAAGTAGATCAAAGATAGCAGATCTTGTCTT
1 AAGATAGCAGATCTTGTCTTCCTGTACTAGCAGCGAAGTAGATCAAAGATAGCAGATCTTATCTT
* * * *
30603630 TCTGTATTGGCAGCGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTGTACTAGTAGCGCAGTA
66 CCTGTATTGGCAGCGAAGTAGATCGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAGTA
30603695 GATCG
131 GATCG
30603700 AAGA
1 AAGA
30603704 CGGAAAATCT
Statistics
Matches: 444, Mismatches: 72, Indels: 50
0.78 0.13 0.09
Matches are distributed among these distances:
130 5 0.01
131 1 0.00
132 5 0.01
133 144 0.32
134 54 0.12
135 197 0.44
136 24 0.05
137 7 0.02
138 7 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.28
Consensus pattern (135 bp):
AAGATAGCAGATCTTGTCTTCCTGTACTAGCAGCGAAGTAGATCAAAGATAGCAGATCTTATCTT
CCTGTATTGGCAGCGAAGTAGATCGAAAATAGCAGATCTTGTCTTCCTGTACTGGTAGCGAAGTA
GATCG
Found at i:30603893 original size:132 final size:132
Alignment explanation
Indices: 30603694--30604245 Score: 741
Period size: 132 Copynumber: 4.2 Consensus size: 132
30603684 GTAGCGCAGT
* * * * *
30603694 AGATCGAAGACGGAAAATCTTAT-TTCCCAAGGTAGTAGGGAAGC-GAATTTAATCCACCAATCT
1 AGATCGAAGACAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAG-ATTTAAGCCACCAATCC
* * *
30603757 TATCTCCCTGAGTAGCAGTGGAATAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTAG
65 TATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGG
30603822 AGC
130 AGC
** * * *
30603825 AGATCGAAGATGGTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCT
1 AGATCGAAGACAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT
* * * *
30603890 ATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGA
66 ATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGGA
30603955 GC
131 GC
* * * * *
30603957 AGATAGAAGGCAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCATCAGTCAT
1 AGATCGAAGACAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT
* * * *
30604022 ATTTCCTTGAGCAGCGGTGGAGTAGGTTGAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGGA
66 ATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGGA
30604087 GC
131 GC
**
30604089 AGATCGAAGGTAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT
1 AGATCGAAGACAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT
* * * *
30604154 TTCTCCCTGAGCAGCAGTGGAGTAGG-TAGAAGATTGTAGATCCTGTATCCCTAAGCAGTAGTGG
66 ATCTCCCTGAGCAGCAGTGGAGTAGGTTA-AAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGG
30604218 AGC
130 AGC
* * * *
30604221 AGATTGAAGGCAGCGAATCTTATCT
1 AGATCGAAGACAGCAAATCCTATCT
30604246 CCTTGGCGTT
Statistics
Matches: 375, Mismatches: 43, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
131 22 0.06
132 352 0.94
133 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (132 bp):
AGATCGAAGACAGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCT
ATCTCCCTGAGCAGCAGTGGAGTAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGGA
GC
Found at i:30604188 original size:264 final size:264
Alignment explanation
Indices: 30603708--30604245 Score: 837
Period size: 264 Copynumber: 2.0 Consensus size: 264
30603698 CGAAGACGGA
* * *
30603708 AAATCTTAT-TTCCCAAGGTAGTAGGGAAGCGAATTTAATCCACCAATCTTATCTCCCTGAGTAG
1 AAATCTTATCTTCCCAAGGTAGTAGGGAAGCGAATTTAAGCCACCAATCATATCTCCCTGAGCAG
*
30603772 CAGTGGAATAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATG
66 CAGTGGAATAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATA
* * *
30603837 GTAAATCTTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGC
131 GCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTAAGC
* *
30603902 AGCAGTGGAGTAGGTTGAAGATTGTAGATCATGTCTCCCTAAGCAGTAGTGGAGCAGATAGAAGG
196 AGCAGTGGAGTAGGTAGAAGATTGTAGATCATGTATCCCTAAGCAGTAGTGGAGCAGATAGAAGG
30603967 CAGC
261 CAGC
* * * * *
30603971 AAATCCTATCTTCCCAAGGTAGTAGGGAAGC-AGATTTAAGCCATCAGTCATATTTCCTTGAGCA
1 AAATCTTATCTTCCCAAGGTAGTAGGGAAGCGA-ATTTAAGCCACCAATCATATCTCCCTGAGCA
* * * * *
30604035 GCGGTGGAGTAGGTTGAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGGT
65 GCAGTGGAATAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGAT
* *
30604100 AGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTTTCTCCCTGAG
130 AGCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTAAG
* *
30604165 CAGCAGTGGAGTAGGTAGAAGATTGTAGATCCTGTATCCCTAAGCAGTAGTGGAGCAGATTGAAG
195 CAGCAGTGGAGTAGGTAGAAGATTGTAGATCATGTATCCCTAAGCAGTAGTGGAGCAGATAGAAG
30604230 GCAGC
260 GCAGC
*
30604235 GAATCTTATCT
1 AAATCTTATCT
30604246 CCTTGGCGTT
Statistics
Matches: 248, Mismatches: 25, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
263 9 0.04
264 239 0.96
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (264 bp):
AAATCTTATCTTCCCAAGGTAGTAGGGAAGCGAATTTAAGCCACCAATCATATCTCCCTGAGCAG
CAGTGGAATAGGTTAAAGATTGTAAATCTTGTCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATA
GCAAATCCTATCTTCCCAAGGTAGTAGGGAAGCAGATTTAAGCCACCAATCCTATCTCCCTAAGC
AGCAGTGGAGTAGGTAGAAGATTGTAGATCATGTATCCCTAAGCAGTAGTGGAGCAGATAGAAGG
CAGC
Found at i:30604391 original size:44 final size:43
Alignment explanation
Indices: 30604326--30604504 Score: 132
Period size: 44 Copynumber: 4.0 Consensus size: 43
30604316 AGATCAAGAC
* * *
30604326 TGAAGATAACTAACCTTATCTCACTGAAGTTACAGTGGAGTC-GGT
1 TGAAGAT-AC-AATCTTATCTC-CTGAAGTTGCAGTGGAGTCAGAT
* *
30604371 TGAAGATATCAATCTTATCTCCTTAAAGTTGCAGT-GAGACAGAT
1 TGAAGATA-CAATCTTATCTCC-TGAAGTTGCAGTGGAGTCAGAT
* * *
30604415 TGAAGTTACAAGTCTTATCTCCCTGAAGTTGTAGTGGAGT-AGAC
1 TGAAGATACAA-TCTTATCT-CCTGAAGTTGCAGTGGAGTCAGAT
* * * *
30604459 TGAGGATGGCGAATCTTGTCTCCTTGAAGTTGTAGTGGAG-CAGAT
1 TGAAGAT-AC-AATCTTATCTCC-TGAAGTTGCAGTGGAGTCAGAT
30604504 T
1 T
30604505 AAAGCCAATA
Statistics
Matches: 109, Mismatches: 15, Indels: 20
0.76 0.10 0.14
Matches are distributed among these distances:
43 8 0.07
44 58 0.53
45 41 0.38
46 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (43 bp):
TGAAGATACAATCTTATCTCCTGAAGTTGCAGTGGAGTCAGAT
Found at i:30605798 original size:24 final size:24
Alignment explanation
Indices: 30605767--30605952 Score: 138
Period size: 24 Copynumber: 8.0 Consensus size: 24
30605757 ATGTATTGTA
*
30605767 TATTATTATTTTAGATTTATCATG
1 TATTATTATTTTAAATTTATCATG
* *
30605791 TTTTATTATTTGT-AATTTATCA-A
1 TATTATTATTT-TAAATTTATCATG
*
30605814 TATTATTATTTTAAATTCAT--TG
1 TATTATTATTTTAAATTTATCATG
**
30605836 TTAACATTATTTTAAATTTATCATG
1 -TATTATTATTTTAAATTTATCATG
30605861 TA-TATCTATTTTAAATTTATCAT-
1 TATTAT-TATTTTAAATTTATCATG
* * *
30605884 TAGTA-T-TTTTAAATTTATTATA
1 TATTATTATTTTAAATTTATCATG
* ** *
30605906 TACTATTATTTTGGATTTATCACG
1 TATTATTATTTTAAATTTATCATG
* *
30605930 TATGATTATTCTAGAA-TTATCAT
1 TATTATTATTTTA-AATTTATCAT
30605953 CAAAATTTTT
Statistics
Matches: 127, Mismatches: 23, Indels: 24
0.73 0.13 0.14
Matches are distributed among these distances:
21 14 0.11
22 6 0.05
23 38 0.30
24 65 0.51
25 4 0.03
ACGTcount: A:0.32, C:0.06, G:0.06, T:0.55
Consensus pattern (24 bp):
TATTATTATTTTAAATTTATCATG
Found at i:30605817 original size:47 final size:46
Alignment explanation
Indices: 30605766--30605927 Score: 129
Period size: 47 Copynumber: 3.5 Consensus size: 46
30605756 AATGTATTGT
* *
30605766 ATATTATTATTTTAGATTTATCATGTTTTATTATTTGTAATTTATCA
1 ATATTATTATTTTAAATTTATCATGTTATATTATTT-TAATTTATCA
* *
30605813 ATATTATTATTTTAAATTCAT--TGTTAACATTATTTTAAATTTATC-
1 ATATTATTATTTTAAATTTATCATGTT-ATATTATTTT-AATTTATCA
* * *
30605858 ATGTATATCTATTTTAAATTTATCA--TTAGTATT-TTTAAATTTATTA
1 ATAT-TAT-TATTTTAAATTTATCATGTTA-TATTATTTTAATTTATCA
* **
30605904 TATACTATTATTTTGGATTTATCA
1 -ATATTATTATTTTAAATTTATCA
30605928 CGTATGATTA
Statistics
Matches: 93, Mismatches: 13, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
45 29 0.31
46 25 0.27
47 39 0.42
ACGTcount: A:0.33, C:0.06, G:0.05, T:0.57
Consensus pattern (46 bp):
ATATTATTATTTTAAATTTATCATGTTATATTATTTTAATTTATCA
Found at i:30605950 original size:69 final size:68
Alignment explanation
Indices: 30605726--30605977 Score: 212
Period size: 70 Copynumber: 3.6 Consensus size: 68
30605716 TGTTTATACT
* * * *
30605726 TATTA-TTA-AATTAATCATTAATATTATCTAAATGTATTGTATATTATTATTTTAGATTTATCA
1 TATTATTTAGAATTTATCATTAATATT-TTTAAATTTATTGTATACTATTATTTTAGATTTATCA
*
30605789 TGTTT
65 TG-TA
* * * *
30605794 TATTATTT-GTAATTTATCAATATTATTATTTTAAATTCATTGT-TAAC-ATTATTTTAAATTTA
1 TATTATTTAG-AATTTATCATTAATA-T-TTTTAAATTTATTGTAT-ACTATTATTTTAGATTTA
30605856 TCATGTA
62 TCATGTA
* * *
30605863 TATCTATTTTA-AATTTATCATTAGTATTTTTAAATTTATTATATACTATTATTTTGGATTTATC
1 TAT-TA-TTTAGAATTTATCATTAATATTTTTAAATTTATTGTATACTATTATTTTAGATTTATC
*
30605927 ACGTA
64 ATGTA
* *
30605932 TGATTATTCTAGAA-TTATCATCAAAATTTTTAAATTTTATATGTAT
1 T-ATTATT-TAGAATTTATCATTAATATTTTTAAA-TTTAT-TGTAT
30605978 TATTATATAT
Statistics
Matches: 148, Mismatches: 20, Indels: 29
0.75 0.10 0.15
Matches are distributed among these distances:
68 22 0.15
69 49 0.33
70 56 0.38
71 20 0.14
72 1 0.01
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.54
Consensus pattern (68 bp):
TATTATTTAGAATTTATCATTAATATTTTTAAATTTATTGTATACTATTATTTTAGATTTATCAT
GTA
Found at i:30606093 original size:23 final size:23
Alignment explanation
Indices: 30606052--30606095 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
30606042 ATTGTACATT
* *
30606052 CATATATATTATTTGTTTTAACA
1 CATATAGATTATTTATTTTAACA
*
30606075 CATATAGATTGTTTATTTTAA
1 CATATAGATTATTTATTTTAA
30606096 AATTTTGAAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (23 bp):
CATATAGATTATTTATTTTAACA
Found at i:30607495 original size:125 final size:125
Alignment explanation
Indices: 30607164--30607534 Score: 526
Period size: 126 Copynumber: 3.0 Consensus size: 125
30607154 ATTAGGTCTT
* * *
30607164 GGAATAAATAATTTTGAGTTAACGTTTTTGATCAAATAGTATAAAATCGCTTCTAGCAGGATGCT
1 GGAAGAAATAATTTTGAGTTAACGTTTTTGAGCAAATAGTGTAAAATCGCTTCTAGCAGGATGCT
* * *
30607229 ATTTGAGAAGAATTTATAAAATCGCGCCTTCGTGGACGCGCTTTTGCTACAGTAGGTCAC
66 ATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCAC
*** * * *
30607289 GGAAGAAATAATTATTTTTTTTACGTTTTTGAGAAAATAGTGTAAAATCGCTTGTAGCAGGATGC
1 GGAAGAAATAATT-TTGAGTTAACGTTTTTGAGCAAATAGTGTAAAATCGCTTCTAGCAGGATGC
* * *
30607354 TATTTGAGAAGAATTTGTGATATCGTGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCCC
65 TATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCAC
* * *
30607415 GGAAGAAATAATTTTGAGTTGACATTTCTGAGCAAATAGTGTAAAATCGCTTCTAGCAGGATGCT
1 GGAAGAAATAATTTTGAGTTAACGTTTTTGAGCAAATAGTGTAAAATCGCTTCTAGCAGGATGCT
* * * * *
30607480 ATTTGAGAAGAATTTGTGAAATCGCACCGTCATGGACGTGATTTTGCTACAGTAG
66 ATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
30607535 CATGTTTGGG
Statistics
Matches: 215, Mismatches: 30, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
125 104 0.48
126 111 0.52
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (125 bp):
GGAAGAAATAATTTTGAGTTAACGTTTTTGAGCAAATAGTGTAAAATCGCTTCTAGCAGGATGCT
ATTTGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGGTCAC
Found at i:30610764 original size:116 final size:116
Alignment explanation
Indices: 30610560--30610784 Score: 335
Period size: 116 Copynumber: 1.9 Consensus size: 116
30610550 ATTAATTGAT
* * *
30610560 AATTGTATTAATTGTTACTAAAATTATCAAATAGTATAAATTTATTAATTGTTAGTACCAGTCAA
1 AATTGTATTAATGGTTACTAAAACTATCAAATAGTATAAAGTTATTAATTGTTAGTACCAGTCAA
*
30610625 AACATTTTACCAAATCTAACATTATGTGAATGTAAAATTATTAAGTCAAAA
66 AACATTTTACCAAATCTAACATTACGTGAATGTAAAATTATTAAGTCAAAA
* * *
30610676 AATTGTGTTAATGGTTAGTAAAACTATCAAATTA-TGTAAAGTTATTAATTGTTAGTACCAGTCA
1 AATTGTATTAATGGTTACTAAAACTATCAAA-TAGTATAAAGTTATTAATTGTTAGTACCAGTCA
* * * *
30610740 AAATATTTTTCCAAATCTAACATTACGTGAATGTAACATTGTTAA
65 AAACATTTTACCAAATCTAACATTACGTGAATGTAAAATTATTAA
30610785 CTTACTTTAG
Statistics
Matches: 97, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
116 95 0.98
117 2 0.02
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (116 bp):
AATTGTATTAATGGTTACTAAAACTATCAAATAGTATAAAGTTATTAATTGTTAGTACCAGTCAA
AACATTTTACCAAATCTAACATTACGTGAATGTAAAATTATTAAGTCAAAA
Found at i:30610835 original size:23 final size:23
Alignment explanation
Indices: 30610795--30610844 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 23
30610785 CTTACTTTAG
* *
30610795 GGTTTTTAAATAATTTAGGTTAA
1 GGTTTTGAAATAAATTAGGTTAA
* *
30610818 GGTTTTGAATTAAATTAGGTTAG
1 GGTTTTGAAATAAATTAGGTTAA
30610841 GGTT
1 GGTT
30610845 AGGGTCTTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (23 bp):
GGTTTTGAAATAAATTAGGTTAA
Found at i:30610857 original size:29 final size:30
Alignment explanation
Indices: 30610812--30611007 Score: 219
Period size: 29 Copynumber: 6.6 Consensus size: 30
30610802 AAATAATTTA
* *
30610812 GGTTAAGGTTTTGAATTAAATTAGG-TTAG
1 GGTTAGGGTTTTTAATTAAATTAGGATTAG
*
30610841 GGTTAGGGTCTTTAATTAAATTAGGATTAG
1 GGTTAGGGTTTTTAATTAAATTAGGATTAG
*
30610871 GGTTTTTAGGGTTTTTAATTAAATTAAG-TTAG
1 GG---TTAGGGTTTTTAATTAAATTAGGATTAG
* * *
30610903 GGTTAGGGTATTTAATT--A--GGGTTTA-
1 GGTTAGGGTTTTTAATTAAATTAGGATTAG
30610928 GGTTAGGGTTTTTAATTAAATTAGGATTAG
1 GGTTAGGGTTTTTAATTAAATTAGGATTAG
30610958 GGTTTTTAGGGTTTTTAATTAAATTAGG-TTAG
1 GG---TTAGGGTTTTTAATTAAATTAGGATTAG
30610990 GGTTAGGGTTTTTAATTA
1 GGTTAGGGTTTTTAATTA
30611008 GGGTATTTAA
Statistics
Matches: 143, Mismatches: 11, Indels: 26
0.79 0.06 0.14
Matches are distributed among these distances:
25 17 0.12
26 3 0.02
27 2 0.01
29 57 0.40
30 8 0.06
32 12 0.08
33 44 0.31
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.45
Consensus pattern (30 bp):
GGTTAGGGTTTTTAATTAAATTAGGATTAG
Found at i:30610891 original size:62 final size:58
Alignment explanation
Indices: 30610812--30611007 Score: 222
Period size: 62 Copynumber: 3.3 Consensus size: 58
30610802 AAATAATTTA
* * *
30610812 GGTTAAGGTTTTGAATTAAATTAGGTTAGGGTTAGGGTCTTTAATTAAATTAGGATTAG
1 GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAAATTAGG-TTAG
* *
30610871 GGTTTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTATTTAATT--A--GGGTTTA-
1 GG---TTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAAATTAGG-TTAG
*
30610928 GGTTAGGGTTTTTAATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTAATTAAATTAGG-TTAGGG---TTAGGGTATTTAATTAAATTAGGTTAG
30610990 GGTTAGGGTTTTTAATTA
1 GGTTAGGGTTTTTAATTA
30611008 GGGTATTTAA
Statistics
Matches: 116, Mismatches: 9, Indels: 21
0.79 0.06 0.14
Matches are distributed among these distances:
54 22 0.19
55 6 0.05
57 2 0.02
58 19 0.16
59 2 0.02
60 2 0.02
61 3 0.03
62 60 0.52
ACGTcount: A:0.28, C:0.01, G:0.27, T:0.45
Consensus pattern (58 bp):
GGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAAATTAGGTTAG
Found at i:30610903 original size:38 final size:38
Alignment explanation
Indices: 30610854--30611003 Score: 138
Period size: 38 Copynumber: 3.7 Consensus size: 38
30610844 TAGGGTCTTT
30610854 AATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTA
1 AATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTA
* * * *
30610892 AATTAAGTTAGGGTTAGGGTATTTAATTAGGGTTTAGGTTAGGGTTTTT
1 AATTAAATTAGGATTAGGG--TTT--TTAGGGTTT---TTA----ATTA
30610941 AATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTA
1 AATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTA
** *
30610979 AATTAGGTTAGGGTTAGGGTTTTTA
1 AATTAAATTAGGATTAGGGTTTTTA
30611004 ATTAGGGTAT
Statistics
Matches: 90, Mismatches: 11, Indels: 22
0.73 0.09 0.18
Matches are distributed among these distances:
38 41 0.46
40 3 0.03
42 12 0.13
45 12 0.13
47 3 0.03
49 19 0.21
ACGTcount: A:0.28, C:0.00, G:0.26, T:0.46
Consensus pattern (38 bp):
AATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTA
Found at i:30610942 original size:87 final size:88
Alignment explanation
Indices: 30610790--30611011 Score: 326
Period size: 87 Copynumber: 2.6 Consensus size: 88
30610780 GTTAACTTAC
* * * ** * *
30610790 TTTAGGGTTTTTAAATAATTTAGGTTAAGGTT-TTGAATTAAATTA-GG-TTAGGGTTAGGGTCT
1 TTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAGGGTTTAGGGTTAGGGTCT
30610852 TTAATTAAATTAGGATTAGGGTT
66 TTAATTAAATTAGGATTAGGGTT
* *
30610875 TTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTATTTAATTAGGGTTTA-GGTTAGGGTTT
1 TTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAGGGTTTAGGGTTAGGGTCT
30610939 TTAATTAAATTAGGATTAGGGTT
66 TTAATTAAATTAGGATTAGGGTT
*
30610962 TTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAGGGT
1 TTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAGGGT
30611012 ATTTAATTAG
Statistics
Matches: 123, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
85 28 0.23
86 9 0.07
87 83 0.67
88 3 0.02
ACGTcount: A:0.27, C:0.00, G:0.26, T:0.46
Consensus pattern (88 bp):
TTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTATTTAATTAGGGTTTAGGGTTAGGGTCT
TTAATTAAATTAGGATTAGGGTT
Found at i:30610961 original size:24 final size:23
Alignment explanation
Indices: 30610892--30610965 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 23
30610882 TTTTTAATTA
* *
30610892 AATTAAGTTAGGGTTAGGGTATTT
1 AATTAAATTA-GGTTAGGGTTTTT
**
30610916 AATTAGGGTTTAGGTTAGGGTTTTT
1 AATTA--AATTAGGTTAGGGTTTTT
30610941 AATTAAATTAGGATTAGGGTTTTT
1 AATTAAATTAGG-TTAGGGTTTTT
30610965 A
1 A
30610966 GGGTTTTTAA
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
23 5 0.12
24 17 0.40
25 17 0.40
26 3 0.07
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (23 bp):
AATTAAATTAGGTTAGGGTTTTT
Found at i:30611010 original size:13 final size:13
Alignment explanation
Indices: 30610992--30611033 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
30610982 TAGGTTAGGG
30610992 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
*
30611005 TTAGGGTATTTAA
1 TTAGGGTTTTTAA
30611018 TTA-GGTTTTTGAA
1 TTAGGGTTTTT-AA
30611031 TTA
1 TTA
30611034 ATTTAGGTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
12 6 0.23
13 20 0.77
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.52
Consensus pattern (13 bp):
TTAGGGTTTTTAA
Found at i:30611025 original size:87 final size:87
Alignment explanation
Indices: 30610843--30611040 Score: 310
Period size: 87 Copynumber: 2.3 Consensus size: 87
30610833 TAGGTTAGGG
*
30610843 TTAGGGTCTTTAATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTA
1 TTAGGGTTTTTAATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTA
*
30610908 GGGTATTTAATTAGGGTTTAGG
66 GGGTATTTAATTAGGGTTTAGA
*
30610930 TTAGGGTTTTTAATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTA
1 TTAGGGTTTTTAATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTA
*
30610995 GGGTTTTTAATTAGGGTATTTA-A
66 GGGTATTTAATTAGGG--TTTAGA
*
30611018 TTA-GGTTTTTGAATTAATTTAGG
1 TTAGGGTTTTT-AATTAAATTAGG
30611041 TTACAGTTAG
Statistics
Matches: 103, Mismatches: 5, Indels: 5
0.91 0.04 0.04
Matches are distributed among these distances:
87 85 0.83
88 14 0.14
89 4 0.04
ACGTcount: A:0.27, C:0.01, G:0.25, T:0.47
Consensus pattern (87 bp):
TTAGGGTTTTTAATTAAATTAGGATTAGGGTTTTTAGGGTTTTTAATTAAATTAAGTTAGGGTTA
GGGTATTTAATTAGGGTTTAGA
Found at i:30611067 original size:73 final size:72
Alignment explanation
Indices: 30610983--30611199 Score: 355
Period size: 73 Copynumber: 3.0 Consensus size: 72
30610973 TAATTAAATT
* **
30610983 AGGTTAGGGTTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAATTTAGGTTACAGT
1 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGG-TTTTGAATTAATTTAGGTTAGGGT
30611048 TAGGGTTA
65 TAGGGTTA
* *
30611056 GGGTTAAGGTTAGGGTTTTTAATTAGGGTTTTTAATTATGGTTTTGAATTAATTTAGGTTAGGGT
1 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTA-GGTTTTGAATTAATTTAGGTTAGGGT
30611121 TAGGGTTA
65 TAGGGTTA
30611129 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAA-TTAGGTTAGGGT
1 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGG-TTTTGAATTAATTTAGGTTAGGGT
30611193 TAGGGTT
65 TAGGGTT
30611200 TTTAATTAGG
Statistics
Matches: 135, Mismatches: 7, Indels: 5
0.92 0.05 0.03
Matches are distributed among these distances:
72 21 0.16
73 112 0.83
74 2 0.01
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (72 bp):
AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGTTTTGAATTAATTTAGGTTAGGGTT
AGGGTTA
Found at i:30611083 original size:13 final size:13
Alignment explanation
Indices: 30611065--30611106 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
30611055 AGGGTTAAGG
30611065 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
30611078 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
* *
30611091 TTATGGTTTTGAA
1 TTAGGGTTTTTAA
30611104 TTA
1 TTA
30611107 ATTTAGGTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (13 bp):
TTAGGGTTTTTAA
Found at i:30611123 original size:6 final size:6
Alignment explanation
Indices: 30611112--30611145 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
30611102 AATTAATTTA
*
30611112 GGTTAG GGTTAG GGTTAA GGTTAG GGTTAG GGTT
1 GGTTAG GGTTAG GGTTAG GGTTAG GGTTAG GGTT
30611146 TTTAATTAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.18, C:0.00, G:0.47, T:0.35
Consensus pattern (6 bp):
GGTTAG
Found at i:30611134 original size:18 final size:18
Alignment explanation
Indices: 30611111--30611145 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
30611101 GAATTAATTT
30611111 AGGTTAGGGTTAGGGTTA
1 AGGTTAGGGTTAGGGTTA
30611129 AGGTTAGGGTTAGGGTT
1 AGGTTAGGGTTAGGGTT
30611146 TTTAATTAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (18 bp):
AGGTTAGGGTTAGGGTTA
Found at i:30611156 original size:13 final size:13
Alignment explanation
Indices: 30611138--30611226 Score: 67
Period size: 13 Copynumber: 6.8 Consensus size: 13
30611128 AAGGTTAGGG
30611138 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
30611151 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
*
30611164 TTAGGATTTTGAATTAA
1 TTAGG-GTTT---TTAA
****
30611181 TTA-GG-TTAGGG
1 TTAGGGTTTTTAA
30611192 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
*
30611205 TTAGGGTATTTAA
1 TTAGGGTTTTTAA
30611218 TTA-GGTTTT
1 TTAGGGTTTT
30611227 GGAATTAATT
Statistics
Matches: 58, Mismatches: 12, Indels: 13
0.70 0.14 0.16
Matches are distributed among these distances:
11 3 0.05
12 7 0.12
13 35 0.60
14 5 0.09
16 1 0.02
17 7 0.12
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.51
Consensus pattern (13 bp):
TTAGGGTTTTTAA
Found at i:30611187 original size:54 final size:55
Alignment explanation
Indices: 30611129--30611556 Score: 326
Period size: 54 Copynumber: 7.7 Consensus size: 55
30611119 GTTAGGGTTA
30611129 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAA-TT
1 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAAGTT
* *
30611183 AGGTTAGGGTTAGGGTTTTTAATTAGGGTATTTAATTAGG-TTTTGGAATTAATTT
1 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTT-GAATTAAGTT
* **** *
30611238 AGGTTAGGGTTA-GATTTAGGGTTAGGGTTTTTAATTAGGGTTTTGAATTAATTTAGGTT
1 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATT-A---A-GTT
* * * *
30611297 AAGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTGAATTA--ATTTAG-GTTATGGTT
1 -AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTA-AGTT
* * * * * *
30611351 AGGGTTAGGGCTAGGATTTTTAATTAAGGTATTTAATTAGGTTTTTGAATTAATTT
1 A-GGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAAGTT
* **** * * *
30611407 AGGTTAGGGTTAGTG-TTAGGGTTAGGGTTTTGAATTAGGGTTTTAAATTAGGGTTTAGGTT
1 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTA------A-GTT
* * * *
30611468 AGGGTTAGGGTTAGGGTTTTTAATTAAGGTTTTGAATTA--ATTTAG-GTT-AG--
1 A-GGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAAGTT
*
30611518 -GGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTATTTAGG
1 AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGG
30611557 TTAGAGTTTT
Statistics
Matches: 295, Mismatches: 54, Indels: 54
0.73 0.13 0.13
Matches are distributed among these distances:
48 34 0.12
52 1 0.00
53 6 0.02
54 133 0.45
55 31 0.11
56 7 0.02
57 4 0.01
58 3 0.01
59 6 0.02
60 15 0.05
61 25 0.08
62 13 0.04
63 17 0.06
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.46
Consensus pattern (55 bp):
AGGTTAGGGTTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAAGTT
Found at i:30611233 original size:67 final size:69
Alignment explanation
Indices: 30610992--30611226 Score: 298
Period size: 73 Copynumber: 3.3 Consensus size: 69
30610982 TAGGTTAGGG
* * **
30610992 TTAGGGTTTTTAATTAGGGTATTTAATTAGGTTTTTGAATTAATTTAGGTTACAGTTAGGGTTAG
1 TTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAATTTAGGTTAGGGTTAGGGTTA-
30611057 GGTTAA
65 -GTTAA
30611063 GGTTAGGGTTTTTAATTAGGGTTTTTAATTATGG-TTTTGAATTAATTTAGGTTAGGGTTAGGGT
1 --TTAGGGTTTTTAATTAGGGTTTTTAATTA-GGATTTTGAATTAATTTAGGTTAGGGTTAGGGT
*
30611127 TAAGGTTAGGG
63 T-A-GTTA--A
*
30611138 TTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAA-TTAGGTTAGGGTTAGGGTT-T
1 TTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAATTTAGGTTAGGGTTAGGGTTAG
30611201 TTAA
66 TTAA
*
30611205 TTAGGGTATTTAATTA-GGTTTT
1 TTAGGGTTTTTAATTAGGGTTTT
30611227 GGAATTAATT
Statistics
Matches: 150, Mismatches: 7, Indels: 17
0.86 0.04 0.10
Matches are distributed among these distances:
66 6 0.04
67 15 0.10
69 3 0.02
72 21 0.14
73 102 0.68
74 3 0.02
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (69 bp):
TTAGGGTTTTTAATTAGGGTTTTTAATTAGGATTTTGAATTAATTTAGGTTAGGGTTAGGGTTAG
TTAA
Found at i:30611303 original size:42 final size:45
Alignment explanation
Indices: 30611255--30611345 Score: 155
Period size: 48 Copynumber: 2.0 Consensus size: 45
30611245 GGTTAGATTT
30611255 AGGGTTAGGGTTTTTAATTAGGGTTTTGAATTAATTTAGGTTAAGG
1 AGGGTTAGGGTTTTTAATTAGGGTTTTGAATTAATTTAGGTTAA-G
30611301 TTAGGGTTAGGGTTTTTAATTAGGGTTTTGAATTAATTTAGGTTA
1 --AGGGTTAGGGTTTTTAATTAGGGTTTTGAATTAATTTAGGTTA
30611346 TGGTTAGGGT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (45 bp):
AGGGTTAGGGTTTTTAATTAGGGTTTTGAATTAATTTAGGTTAAG
Done.