Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 99 of 173
Found at i:30840019 original size:15 final size:15
Alignment explanation
Indices: 30839999--30840066 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 15
30839989 ATACTATAAA
30839999 ATATTTATTATTAAT
1 ATATTTATTATTAAT
30840014 ATATTTA-TAGTTGTAAT
1 ATATTTATTA--T-TAAT
*
30840031 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
*
30840048 ATA-TTAATATTAA-
1 ATATTTATTATTAAT
30840061 ATATTT
1 ATATTT
30840067 TAATAAAATT
Statistics
Matches: 44, Mismatches: 2, Indels: 15
0.72 0.03 0.25
Matches are distributed among these distances:
13 3 0.07
14 13 0.30
15 10 0.23
16 1 0.02
17 7 0.16
18 1 0.02
19 7 0.16
20 2 0.05
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:30840069 original size:15 final size:15
Alignment explanation
Indices: 30840030--30840071 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
30840020 ATAGTTGTAA
*
30840030 TAAATA-TTTATTAT
1 TAAATATTTTAATAT
*
30840044 TAAA-ATATTAATAT
1 TAAATATTTTAATAT
30840058 TAAATATTTTAATA
1 TAAATATTTTAATA
30840072 AAATTTGAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 1 0.04
14 14 0.61
15 8 0.35
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
TAAATATTTTAATAT
Found at i:30840115 original size:16 final size:16
Alignment explanation
Indices: 30840084--30840120 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
30840074 ATTTGAAGAA
30840084 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
30840100 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
30840116 TATTA
1 TATTA
30840121 AAATAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:30840170 original size:27 final size:24
Alignment explanation
Indices: 30840115--30840172 Score: 80
Period size: 24 Copynumber: 2.3 Consensus size: 24
30840105 TTAAAATTTA
30840115 TTATTAAAATAAAAATTAAATAAT
1 TTATTAAAATAAAAATTAAATAAT
*
30840139 TTATTAAAATAATAAATTATATTAAT
1 TTATTAAAATAA-AAATTA-AATAAT
30840165 TATATTAA
1 T-TATTAA
30840173 TAATTTATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 12 0.40
25 6 0.20
26 6 0.20
27 6 0.20
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (24 bp):
TTATTAAAATAAAAATTAAATAAT
Found at i:30840174 original size:25 final size:25
Alignment explanation
Indices: 30840115--30840185 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 25
30840105 TTAAAATTTA
*
30840115 TTATTAAAATAA-AAATTA-AATAAT
1 TTATT-AAATAATAAATTATATTAAT
30840139 TTATTAAAATAATAAATTATATTAAT
1 TTATT-AAATAATAAATTATATTAAT
**
30840165 TATATT-AATAATTTATTATAT
1 T-TATTAAATAATAAATTATAT
30840186 GACTAAATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
24 12 0.29
25 19 0.46
26 6 0.15
27 4 0.10
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (25 bp):
TTATTAAATAATAAATTATATTAAT
Found at i:30841770 original size:66 final size:66
Alignment explanation
Indices: 30841699--30841827 Score: 231
Period size: 66 Copynumber: 2.0 Consensus size: 66
30841689 TCAATCATGC
* * *
30841699 ATCATACATATAACATAAATACACATTCATAAAGACTTTATTCATATCCATAATCGAATCATAAT
1 ATCATACATATAACATAAATACACATTCATAAAGACTTTACTCATACCCATAACCGAATCATAAT
30841764 G
66 G
30841765 ATCATACATATAACATAAATACACATTCATAAAGACTTTACTCATACCCATAACCGAATCATA
1 ATCATACATATAACATAAATACACATTCATAAAGACTTTACTCATACCCATAACCGAATCATA
30841828 CTTCTTTACA
Statistics
Matches: 60, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
66 60 1.00
ACGTcount: A:0.46, C:0.21, G:0.04, T:0.29
Consensus pattern (66 bp):
ATCATACATATAACATAAATACACATTCATAAAGACTTTACTCATACCCATAACCGAATCATAAT
G
Found at i:30843614 original size:21 final size:21
Alignment explanation
Indices: 30843572--30843614 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
30843562 TAATTAATTT
* * **
30843572 GGAATTAAATCTTTTTGTAAG
1 GGAATAAAATCTTTCTAAAAG
30843593 GGAATAAAATCTTTCTAAAAG
1 GGAATAAAATCTTTCTAAAAG
30843614 G
1 G
30843615 AAACCTAAAT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.35
Consensus pattern (21 bp):
GGAATAAAATCTTTCTAAAAG
Found at i:30846156 original size:63 final size:63
Alignment explanation
Indices: 30845980--30846158 Score: 207
Period size: 63 Copynumber: 2.8 Consensus size: 63
30845970 GTTCTAAACC
* * * * * * *
30845980 AATTTATTTGACACAAGCACCACAACACACACAATCATTCCTCGGATCAAAACCTTCAGCTCT
1 AATTTATTTTACACAAGCACCACAACATACACAATCATTCCTTGCATCAACACATTCAGCGCT
* * * * *
30846043 AATTTATTTTACACTAGCACTACAGCATGCACAATCATTCCCTGCATCAACACATTCAGCAGC-
1 AATTTATTTTACACAAGCACCACAACATACACAATCATTCCTTGCATCAACACATTCAGC-GCT
* * *
30846106 AGTTTATTTTACACAAGCACCACAACATACACAATTATTCATTGCATCAACAC
1 AATTTATTTTACACAAGCACCACAACATACACAATCATTCCTTGCATCAACAC
30846159 CTTCTCCAAG
Statistics
Matches: 95, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
63 94 0.99
64 1 0.01
ACGTcount: A:0.36, C:0.30, G:0.08, T:0.26
Consensus pattern (63 bp):
AATTTATTTTACACAAGCACCACAACATACACAATCATTCCTTGCATCAACACATTCAGCGCT
Found at i:30873977 original size:44 final size:43
Alignment explanation
Indices: 30873914--30873996 Score: 130
Period size: 44 Copynumber: 1.9 Consensus size: 43
30873904 TATGTGATTG
* *
30873914 ATATTGAAATGGCAAATATGAGAATATGAATATGAGATGATAAA
1 ATATTGAAATGGAAAATATGAGAA-ACGAATATGAGATGATAAA
*
30873958 ATATTGAAATGGAAAATATGAGAAACGATTATGAGATGA
1 ATATTGAAATGGAAAATATGAGAAACGAATATGAGATGA
30873997 GAAATAAGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
43 13 0.36
44 23 0.64
ACGTcount: A:0.49, C:0.02, G:0.22, T:0.27
Consensus pattern (43 bp):
ATATTGAAATGGAAAATATGAGAAACGAATATGAGATGATAAA
Found at i:30879093 original size:37 final size:37
Alignment explanation
Indices: 30879044--30879118 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
30879034 ATTTCACCAT
*
30879044 TTTTAACCATAAATCATGCTAGCCAGTTTTTACTTAA
1 TTTTAACCATAAATCATGCTAGCCAATTTTTACTTAA
*
30879081 TTTTAACCATAAATTATGCTAGCCAATTTTTACTTAA
1 TTTTAACCATAAATCATGCTAGCCAATTTTTACTTAA
30879118 T
1 T
30879119 CTTATAACAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.33, C:0.17, G:0.07, T:0.43
Consensus pattern (37 bp):
TTTTAACCATAAATCATGCTAGCCAATTTTTACTTAA
Found at i:30887201 original size:42 final size:39
Alignment explanation
Indices: 30887114--30887235 Score: 111
Period size: 40 Copynumber: 3.0 Consensus size: 39
30887104 CAAAATGCTA
* * ** *
30887114 CAAAAGGTAAGGCATTAGCGGCGTTTTTGAATAAACGCCG
1 CAAAAGGTCA-GCAATAGCGGCGTTTTTTCATAAAAGCCG
* *
30887154 CAAAAGAGT-AGAACCATAGCGGCGTTTTTCTCATAAAAGTCG
1 CAAAAG-GTCAG--CAATAGCGGCGTTTTT-TCATAAAAGCCG
* *
30887196 CAAAAGGTCAGCAATAGCGGCGCTTTTTCATAAACGCCG
1 CAAAAGGTCAGCAATAGCGGCGTTTTTTCATAAAAGCCG
30887235 C
1 C
30887236 GAATATGTAT
Statistics
Matches: 67, Mismatches: 10, Indels: 11
0.76 0.11 0.12
Matches are distributed among these distances:
39 12 0.18
40 21 0.31
41 18 0.27
42 16 0.24
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (39 bp):
CAAAAGGTCAGCAATAGCGGCGTTTTTTCATAAAAGCCG
Found at i:30888121 original size:13 final size:13
Alignment explanation
Indices: 30888104--30888134 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
30888094 ATAGAAGGCA
30888104 AAAATTTTATTAG
1 AAAATTTTATTAG
*
30888117 GAAATTTTATTAG
1 AAAATTTTATTAG
30888130 AAAAT
1 AAAAT
30888135 AATTAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (13 bp):
AAAATTTTATTAG
Found at i:30888191 original size:23 final size:23
Alignment explanation
Indices: 30888161--30888228 Score: 118
Period size: 23 Copynumber: 3.0 Consensus size: 23
30888151 TTGTTATTTT
30888161 GTTTATGAAAACAGGAATATATA
1 GTTTATGAAAACAGGAATATATA
*
30888184 GTTTATGAAAACAAGAATATATA
1 GTTTATGAAAACAGGAATATATA
*
30888207 GTTTATGAAAATAGGAATATAT
1 GTTTATGAAAACAGGAATATAT
30888229 TAAATAAAGG
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.49, C:0.03, G:0.16, T:0.32
Consensus pattern (23 bp):
GTTTATGAAAACAGGAATATATA
Found at i:30889308 original size:26 final size:26
Alignment explanation
Indices: 30889279--30889329 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
30889269 GAATTTTATA
*
30889279 TTTTTT-TAATTTGGTACTTAAATTT
1 TTTTTTCTAATTTGATACTTAAATTT
*
30889304 TTTTTTCTAATTTGATATTTAAATTT
1 TTTTTTCTAATTTGATACTTAAATTT
30889330 ATCAAACATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 6 0.26
26 17 0.74
ACGTcount: A:0.25, C:0.04, G:0.06, T:0.65
Consensus pattern (26 bp):
TTTTTTCTAATTTGATACTTAAATTT
Found at i:30890013 original size:35 final size:35
Alignment explanation
Indices: 30889967--30890035 Score: 129
Period size: 35 Copynumber: 2.0 Consensus size: 35
30889957 AGAATAAAAT
*
30889967 TTAATGATTATCATAACTTACATAAACATTTAAAG
1 TTAATGATTATCATAACTTACACAAACATTTAAAG
30890002 TTAATGATTATCATAACTTACACAAACATTTAAA
1 TTAATGATTATCATAACTTACACAAACATTTAAA
30890036 TAATATAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.46, C:0.13, G:0.04, T:0.36
Consensus pattern (35 bp):
TTAATGATTATCATAACTTACACAAACATTTAAAG
Found at i:30896338 original size:22 final size:23
Alignment explanation
Indices: 30896277--30896338 Score: 58
Period size: 22 Copynumber: 2.7 Consensus size: 23
30896267 TATTGTTTTT
*
30896277 AGCTCAT-TGAAGCTTACTGTTTC
1 AGCTCATATG-AGCTTACTGCTTC
* *
30896300 AGCTCGTATGAGGTTACT-CTTC
1 AGCTCATATGAGCTTACTGCTTC
30896322 AGCTCATCA-GAGCTTAC
1 AGCTCAT-ATGAGCTTAC
30896339 CATTTTAGCT
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
22 16 0.50
23 14 0.44
24 2 0.06
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (23 bp):
AGCTCATATGAGCTTACTGCTTC
Found at i:30903488 original size:22 final size:23
Alignment explanation
Indices: 30903422--30903508 Score: 90
Period size: 23 Copynumber: 3.8 Consensus size: 23
30903412 CAGCTTATAA
*
30903422 GAGCTTACTGTTTTCAGCACGT-T
1 GAGCTTACTG-TTTCAGCTCGTAT
* *
30903445 GAAGCTTACCGTTTTAGCTCGTAT
1 G-AGCTTACTGTTTCAGCTCGTAT
30903469 GAGCTTACTG-TTCAGCTCGTCA-
1 GAGCTTACTGTTTCAGCTCGT-AT
*
30903491 GAGCTTACTGTTTTAGCT
1 GAGCTTACTGTTTCAGCT
30903509 TAATAGAGCC
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
22 19 0.35
23 25 0.46
24 10 0.19
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (23 bp):
GAGCTTACTGTTTCAGCTCGTAT
Found at i:30911698 original size:34 final size:34
Alignment explanation
Indices: 30911660--30911731 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
30911650 ACCATGATTT
30911660 TTTTGAATAATATATTAGCCAATCGGGTAGTTGG
1 TTTTGAATAATATATTAGCCAATCGGGTAGTTGG
30911694 TTTTGAATAATATATTAGCCAATCGGGTAGTTGG
1 TTTTGAATAATATATTAGCCAATCGGGTAGTTGG
30911728 TTTT
1 TTTT
30911732 CATTTGAGGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.28, C:0.08, G:0.22, T:0.42
Consensus pattern (34 bp):
TTTTGAATAATATATTAGCCAATCGGGTAGTTGG
Found at i:30913872 original size:25 final size:24
Alignment explanation
Indices: 30913844--30913900 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
30913834 GGTAACTCCG
30913844 AAGAGCTATTATCAGGAAGCTCACA
1 AAGAGCTA-TATCAGGAAGCTCACA
* *
30913869 AAGAGCCTATATCAGGACGCTCATA
1 AAGAG-CTATATCAGGAAGCTCACA
30913894 AAGAGCT
1 AAGAGCT
30913901 GCGGTATGTC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 2 0.07
25 24 0.83
26 3 0.10
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.19
Consensus pattern (24 bp):
AAGAGCTATATCAGGAAGCTCACA
Found at i:30913961 original size:64 final size:64
Alignment explanation
Indices: 30913876--30913999 Score: 169
Period size: 64 Copynumber: 1.9 Consensus size: 64
30913866 ACAAAGAGCC
* * * * * *
30913876 TATATCAGGACGCTCATAAAGAGCTGCGGTATGTCCGCAATATATGCAGGATC-AATACCGGTCA
1 TATAACAGGACGCTCACAAAGAGCTACAGTATATCCGCAACATATGCAGGA-CAAATACCGGTCA
*
30913940 TATAACAGGACGCTCACAAAGAGCTACAGTATATCCGCAACATATGTAGGACAAATACCG
1 TATAACAGGACGCTCACAAAGAGCTACAGTATATCCGCAACATATGCAGGACAAATACCG
30914000 ATCGAGATGC
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
63 1 0.02
64 51 0.98
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (64 bp):
TATAACAGGACGCTCACAAAGAGCTACAGTATATCCGCAACATATGCAGGACAAATACCGGTCA
Found at i:30919164 original size:17 final size:17
Alignment explanation
Indices: 30919122--30919179 Score: 77
Period size: 17 Copynumber: 3.6 Consensus size: 17
30919112 TAATCACTTT
*
30919122 AATATTAAATT-TA-TA
1 AATATTAAATTAAATTA
*
30919137 AA-ATAAAATTAAATTA
1 AATATTAAATTAAATTA
30919153 AATATTAAATTAAATTA
1 AATATTAAATTAAATTA
30919170 AATATTAAAT
1 AATATTAAAT
30919180 CTATTAAAAT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
14 7 0.19
15 3 0.08
16 4 0.11
17 23 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (17 bp):
AATATTAAATTAAATTA
Found at i:30919179 original size:12 final size:12
Alignment explanation
Indices: 30919120--30919167 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
30919110 CTTAATCACT
*
30919120 TTAATATTAAATT
1 TTAA-ATTAAATA
*
30919133 TATAAAATAAA-A
1 T-TAAATTAAATA
30919145 TTAAATTAAATA
1 TTAAATTAAATA
30919157 TTAAATTAAAT
1 TTAAATTAAAT
30919168 TAAATATTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
11 8 0.27
12 13 0.43
13 6 0.20
14 3 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TTAAATTAAATA
Found at i:30919825 original size:17 final size:18
Alignment explanation
Indices: 30919798--30919838 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
30919788 ACGAAAAACA
30919798 AAAACCAAAACC-AAGCCC
1 AAAA-CAAAACCAAAGCCC
*
30919816 AAAACAAAACCAAAGCCT
1 AAAACAAAACCAAAGCCC
30919834 AAAAC
1 AAAAC
30919839 TTAGTTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.61, C:0.32, G:0.05, T:0.02
Consensus pattern (18 bp):
AAAACAAAACCAAAGCCC
Found at i:30930252 original size:16 final size:17
Alignment explanation
Indices: 30930218--30930252 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
30930208 TTTTCGTTTA
*
30930218 AAAAATAAAATAATTTT
1 AAAAATAAAATAATATT
30930235 AAAAATAAAAT-ATATT
1 AAAAATAAAATAATATT
30930251 AA
1 AA
30930253 TTATTTAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AAAAATAAAATAATATT
Found at i:30930495 original size:16 final size:16
Alignment explanation
Indices: 30930452--30930501 Score: 64
Period size: 16 Copynumber: 3.1 Consensus size: 16
30930442 ATTTATAAAA
*
30930452 ATAATTTAAAATTTGT
1 ATAATTTAAAATTTAT
*
30930468 AAAATATTAAAATTTAT
1 ATAAT-TTAAAATTTAT
*
30930485 TTAATTTAAAATTTAT
1 ATAATTTAAAATTTAT
30930501 A
1 A
30930502 AAAAGTATTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
16 15 0.54
17 13 0.46
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (16 bp):
ATAATTTAAAATTTAT
Found at i:30930692 original size:16 final size:15
Alignment explanation
Indices: 30930650--30930706 Score: 69
Period size: 16 Copynumber: 3.5 Consensus size: 15
30930640 TCTATTATAT
30930650 TTAATTTATATAAATAA
1 TTAATTT-TATAAA-AA
30930667 TTTAAATTTTATAAAATA
1 -TT-AATTTTATAAAA-A
30930685 TTAATTTTATAAAAA
1 TTAATTTTATAAAAA
30930700 TTAATTT
1 TTAATTT
30930707 ATTTTAGCCG
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
15 8 0.22
16 12 0.32
17 3 0.08
18 9 0.24
19 5 0.14
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTAATTTTATAAAAA
Found at i:30930712 original size:19 final size:18
Alignment explanation
Indices: 30930648--30930712 Score: 62
Period size: 19 Copynumber: 3.6 Consensus size: 18
30930638 TATCTATTAT
* *
30930648 ATTTAATTTATATAAATA
1 ATTTATTTTATAAAAATA
30930666 ATTTAAATTTTAT-AAAAT-
1 ATTT--ATTTTATAAAAATA
*
30930684 ATTAATTTTATAAAAATTA
1 ATTTATTTTATAAAAA-TA
30930703 ATTTATTTTA
1 ATTTATTTTA
30930713 GCCGATTGAG
Statistics
Matches: 38, Mismatches: 4, Indels: 9
0.75 0.08 0.18
Matches are distributed among these distances:
16 7 0.18
17 4 0.11
18 8 0.21
19 13 0.34
20 6 0.16
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
ATTTATTTTATAAAAATA
Found at i:30931379 original size:5 final size:5
Alignment explanation
Indices: 30931371--30931405 Score: 52
Period size: 5 Copynumber: 7.0 Consensus size: 5
30931361 ATTTTATGAT
* *
30931371 ATAAA ATAAA ATAAA ATAAA ATAAT ATAAT ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA
30931406 TTGATATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (5 bp):
ATAAA
Found at i:30931652 original size:15 final size:16
Alignment explanation
Indices: 30931628--30931662 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
30931618 TATTTTAATA
**
30931628 TTATTTTTTTGAAAAT
1 TTATTTTTTAAAAAAT
30931644 TTATTTTTTAAAAAAT
1 TTATTTTTTAAAAAAT
30931660 TTA
1 TTA
30931663 AAGAAAATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.37, C:0.00, G:0.03, T:0.60
Consensus pattern (16 bp):
TTATTTTTTAAAAAAT
Found at i:30939760 original size:22 final size:22
Alignment explanation
Indices: 30939734--30939792 Score: 75
Period size: 22 Copynumber: 2.7 Consensus size: 22
30939724 GAGAAATAAA
* *
30939734 AATTGAGTGAGAATTAAGAGGG
1 AATTGAGAGAGAATTAAAAGGG
30939756 AATTGAGAGA-AATTTAAAAGGG
1 AATTGAGAGAGAA-TTAAAAGGG
*
30939778 ATTTGAGAGAGAATT
1 AATTGAGAGAGAATT
30939793 GAGAATGTGA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
21 2 0.06
22 28 0.88
23 2 0.06
ACGTcount: A:0.44, C:0.00, G:0.31, T:0.25
Consensus pattern (22 bp):
AATTGAGAGAGAATTAAAAGGG
Found at i:30940859 original size:30 final size:30
Alignment explanation
Indices: 30940825--30940887 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
30940815 GATTGGGGGG
* *
30940825 TTGGGAGGGGAG-GGGAGGGGAGTAAAAGTT
1 TTGGGAGGGAAGTGGGA-AGGAGTAAAAGTT
30940855 TTGGGAGGGAAGTGGGAAGGAGTAAAAGTT
1 TTGGGAGGGAAGTGGGAAGGAGTAAAAGTT
30940885 TTG
1 TTG
30940888 AGGGAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.21
Consensus pattern (30 bp):
TTGGGAGGGAAGTGGGAAGGAGTAAAAGTT
Found at i:30940960 original size:9 final size:9
Alignment explanation
Indices: 30940946--30940982 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
30940936 TATAGTTTGA
30940946 TATTCGAAT
1 TATTCGAAT
30940955 TATTCGAAT
1 TATTCGAAT
* *
30940964 TAATCGAGT
1 TATTCGAAT
30940973 TATTCGAAT
1 TATTCGAAT
30940982 T
1 T
30940983 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (9 bp):
TATTCGAAT
Found at i:30951499 original size:19 final size:20
Alignment explanation
Indices: 30951465--30951515 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 20
30951455 GTGACACTTG
30951465 AATTGGATG-TCGCAACATC
1 AATTGGATGTTCGCAACATC
*
30951484 AATTGGATGTTC-CAACATT
1 AATTGGATGTTCGCAACATC
30951503 AGATTTGGATGTT
1 A-A-TTGGATGTT
30951516 GTGACACCGC
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
19 16 0.57
20 3 0.11
21 9 0.32
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (20 bp):
AATTGGATGTTCGCAACATC
Found at i:30953646 original size:27 final size:26
Alignment explanation
Indices: 30953604--30953696 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 26
30953594 AAACACGTCA
30953604 GAAAGTAAAAGCCTTTGTGGCGTAATAT
1 GAAAG-AAAAG-CTTTGTGGCGTAATAT
*
30953632 GAAAGAAAAGTCTTTGTGACGTAATAT
1 GAAAGAAAAG-CTTTGTGGCGTAATAT
* *
30953659 AAAAGAAAAGCTTTTGTGGCATAATAT
1 GAAAGAAAAGC-TTTGTGGCGTAATAT
30953686 GAAAGAAAAGC
1 GAAAGAAAAGC
30953697 CTGTGGAGGC
Statistics
Matches: 58, Mismatches: 6, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
26 1 0.02
27 52 0.90
28 5 0.09
ACGTcount: A:0.43, C:0.09, G:0.23, T:0.26
Consensus pattern (26 bp):
GAAAGAAAAGCTTTGTGGCGTAATAT
Found at i:30964107 original size:18 final size:18
Alignment explanation
Indices: 30964086--30964120 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
30964076 TTCACTCTCT
30964086 TTTTTCGGTTTTACTTTA
1 TTTTTCGGTTTTACTTTA
*
30964104 TTTTTCGTTTTTACTTT
1 TTTTTCGGTTTTACTTT
30964121 TAAAACTTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.09, C:0.11, G:0.09, T:0.71
Consensus pattern (18 bp):
TTTTTCGGTTTTACTTTA
Found at i:30965115 original size:19 final size:19
Alignment explanation
Indices: 30965091--30965220 Score: 215
Period size: 19 Copynumber: 6.7 Consensus size: 19
30965081 AATTTTTGAG
30965091 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
30965110 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
30965129 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
30965148 GATTTATGCAATCTTAGATAT
1 GA--TATGCAATCTTAGATAT
30965169 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
30965188 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
30965207 GATATGCAATCTTA
1 GATATGCAATCTTA
30965221 AAATATATGA
Statistics
Matches: 103, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
19 84 0.82
21 19 0.18
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.38
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:30965160 original size:59 final size:57
Alignment explanation
Indices: 30965091--30965220 Score: 215
Period size: 59 Copynumber: 2.2 Consensus size: 57
30965081 AATTTTTGAG
*
30965091 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* *
30965148 GATTTATGCAATCTTAGATATGATATGCAATCTTAGATATGATATATAATCTTAGATAT
1 GA--TATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
30965207 GATATGCAATCTTA
1 GATATGCAATCTTA
30965221 AAATATATGA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
57 14 0.21
59 54 0.79
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.38
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:30966859 original size:96 final size:98
Alignment explanation
Indices: 30966692--30966884 Score: 345
Period size: 96 Copynumber: 2.0 Consensus size: 98
30966682 AAAAATCATG
*
30966692 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
30966757 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
*
30966790 AAGGAAATATTCCGAGTTTGGGATTCTAAAGG-ATCGTG-CCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
*
30966853 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
30966885 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
96 56 0.61
97 5 0.05
98 31 0.34
ACGTcount: A:0.28, C:0.10, G:0.25, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:30971380 original size:14 final size:14
Alignment explanation
Indices: 30971358--30971409 Score: 70
Period size: 14 Copynumber: 3.7 Consensus size: 14
30971348 GTTCAGATTC
30971358 AAAAA-AAAAACAA
1 AAAAACAAAAACAA
30971371 AAAAACAAAAACAA
1 AAAAACAAAAACAA
*
30971385 AAAAACAAAAAAACA
1 AAAAACAAAAACA-A
*
30971400 AAAAATAAAA
1 AAAAACAAAA
30971410 GTGAAAGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.14
14 20 0.57
15 10 0.29
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (14 bp):
AAAAACAAAAACAA
Found at i:30971409 original size:22 final size:21
Alignment explanation
Indices: 30971358--30971409 Score: 86
Period size: 22 Copynumber: 2.4 Consensus size: 21
30971348 GTTCAGATTC
30971358 AAAAAAAAAACAAAAAAACAA
1 AAAAAAAAAACAAAAAAACAA
30971379 AAACAAAAAAACAAAAAAACAA
1 AAA-AAAAAAACAAAAAAACAA
*
30971401 AAAATAAAA
1 AAAAAAAAA
30971410 GTGAAAGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 8 0.28
22 21 0.72
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (21 bp):
AAAAAAAAAACAAAAAAACAA
Found at i:30971423 original size:1 final size:1
Alignment explanation
Indices: 30971358--30971409 Score: 50
Period size: 1 Copynumber: 52.0 Consensus size: 1
30971348 GTTCAGATTC
* * * * * *
30971358 AAAAAAAAAACAAAAAAACAAAAACAAAAAAACAAAAAAACAAAAAATAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
30971410 GTGAAAGAAA
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
1 39 1.00
ACGTcount: A:0.88, C:0.10, G:0.00, T:0.02
Consensus pattern (1 bp):
A
Found at i:30971428 original size:8 final size:8
Alignment explanation
Indices: 30971361--30971404 Score: 74
Period size: 8 Copynumber: 5.8 Consensus size: 8
30971351 CAGATTCAAA
30971361 AAAAAAAC
1 AAAAAAAC
30971369 AAAAAAAC
1 AAAAAAAC
30971377 --AAAAAC
1 AAAAAAAC
30971383 AAAAAAAC
1 AAAAAAAC
30971391 AAAAAAAC
1 AAAAAAAC
30971399 AAAAAA
1 AAAAAA
30971405 TAAAAGTGAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 6 0.18
8 28 0.82
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (8 bp):
AAAAAAAC
Found at i:30972954 original size:44 final size:44
Alignment explanation
Indices: 30972774--30972959 Score: 137
Period size: 44 Copynumber: 4.2 Consensus size: 44
30972764 GAAGATTGTA
30972774 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCG
1 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCG
* ** ** *
30972818 GATCTTATCTTTCC-AAG-A-TAGTGGGAAGCAGATTTAAG-CCACC
1 GATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACGGCG
* * * * * * * * * ** **
30972861 AAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTA
1 GA-TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCG
30972906 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCG
1 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCG
30972950 GATCTTATCT
1 GATCTTATCT
30972960 TTCCAAGATA
Statistics
Matches: 100, Mismatches: 34, Indels: 16
0.67 0.23 0.11
Matches are distributed among these distances:
42 4 0.04
43 9 0.09
44 78 0.78
45 7 0.07
46 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.24
Consensus pattern (44 bp):
GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCG
Found at i:30973091 original size:132 final size:132
Alignment explanation
Indices: 30972663--30973066 Score: 709
Period size: 132 Copynumber: 3.1 Consensus size: 132
30972653 CTACATTGAC
*
30972663 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
30972728 CAAACCTTGTCTCCCTGAGTAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
30972793 GT
131 GT
30972795 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
30972860 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
30972925 GT
131 GT
* *
30972927 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTAGGAAGCAGATTTAAGGCAC
1 AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* * *
30972992 CAAGCCTTGTCTCCCTCAGCAGCAGTGGAGAAGGTTGAAGATTGTAGATCCTATCTCCCTGAAGT
66 CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCT-AAGC
*
30973057 TGT
130 AGT
30973060 AGTGGAG
1 AGTGGAG
30973067 TGGATTAGAA
Statistics
Matches: 261, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
132 249 0.95
133 12 0.05
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (132 bp):
AGTGGAGCAGATCGAAGACGGCGGATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTCAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
GT
Found at i:30973173 original size:44 final size:43
Alignment explanation
Indices: 30973043--30973639 Score: 361
Period size: 44 Copynumber: 13.8 Consensus size: 43
30973033 TTGTAGATCC
* ** * * *
30973043 TATCTCCCTGAAGTTGTAGTGGAGTGGA-TTAGAACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
30973087 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
30973127 TATCTCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCT
* * * *
30973171 TATC-CTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTTT
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * *
30973216 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGTCGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCT
* * * * *
30973260 TATCTCCCTAAAGTTGCAGTGGAGCGGATTAA-AACCTTAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
30973304 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
*
30973344 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAGCAAGTCT
* *
30973388 TATC-CTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCT
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCT
* * *
30973433 TATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCTGATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC--A-AGTCT
* * * * * * *
30973477 TATCTCTCTGAAGTTACAGTGGAGCGGATTAA-AACCTTAGATCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCT
* * * * * *
30973521 TATCTCTCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
* * *
30973561 TATCTCCCTGAAGTTGCAGTGAAACAGACTAAATAAGCAAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGAAGCAAGTCT
30973605 TATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGA
1 TATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGA
30973640 TGGCACTAAT
Statistics
Matches: 431, Mismatches: 89, Indels: 66
0.74 0.15 0.11
Matches are distributed among these distances:
40 61 0.14
41 29 0.07
42 15 0.03
43 29 0.07
44 219 0.51
45 76 0.18
46 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (43 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCT
Found at i:30973283 original size:217 final size:217
Alignment explanation
Indices: 30973039--30973644 Score: 1052
Period size: 217 Copynumber: 2.8 Consensus size: 217
30973029 AAGATTGTAG
* * *
30973039 ATCCTATCTCCCTGAAGTTGTAGTGGAGTGGATTAGAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* *
30973104 AGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACTAAGTAAGCAAGT
66 AGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGT
* *
30973169 CTTATCCTCCTCAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTTTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
30973234 GTGGAGCAGATTAAAG-TCGATA
196 GTGGAGCAGATTAAAGCT-GATA
*
30973256 ATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* *
30973321 AGAGAGCAGATCGCATCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGT
66 AGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGT
30973386 CTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
131 CTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
30973451 GTGGAGCAGATTAAAGCTGATA
196 GTGGAGCAGATTAAAGCTGATA
* * *
30973473 ATCCTATCTCTCTGAAGTTACAGTGGAGCGGATTAAAACCTTAGATCATATCTCTCTGAAGTTGC
1 ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
* *
30973538 AGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGAAACAGACTAAATAAGCAAGT
66 AGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGT
*
30973603 CTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGCA
131 CTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCA
30973645 CTAATTCCTA
Statistics
Matches: 369, Mismatches: 19, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
217 368 1.00
218 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27
Consensus pattern (217 bp):
ATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGC
AGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGT
CTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCA
GTGGAGCAGATTAAAGCTGATA
Found at i:30973347 original size:173 final size:172
Alignment explanation
Indices: 30973168--30973491 Score: 408
Period size: 173 Copynumber: 1.9 Consensus size: 172
30973158 AGTAAGCAAG
* * *
30973168 TCTTATC-CTCCTCAAGTTGCAGTGGGGCAGACTGAAGAT-GGCAAGTTTTAT-CTCCCTGAAGT
1 TCTTATCTC-CCTCAAGTTGCAGTGGAGCAGACT-AA-ATAAGCAAGTCTTATCCT-CCTGAAGT
* *
30973230 TGCAGTGGAGCAGATTAAAG-TCG-ATAATCCTATCTCCCTAAAGTTGCAGTGGAGCGGATTAAA
62 TGCAGTGGAGCAGACTAAAGATCGCA-AATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATT-AA
*
30973293 ACCT-TAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAA
125 ACCTATA-ATCCTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAA
*
30973341 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCA
1 TCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCA
* * * * * * *
30973406 GTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTGA
66 GTGGAGCAGACTAAAGATCGCAAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAACCT-A
30973471 TAATCCTATCTCTCTGAAGTT
130 TAATCCTATCTCTCTGAAGTT
30973492 ACAGTGGAGC
Statistics
Matches: 130, Mismatches: 14, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
171 2 0.02
172 42 0.32
173 82 0.63
174 4 0.03
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (172 bp):
TCTTATCTCCCTCAAGTTGCAGTGGAGCAGACTAAATAAGCAAGTCTTATCCTCCTGAAGTTGCA
GTGGAGCAGACTAAAGATCGCAAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTAAACCTAT
AATCCTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCAAA
Found at i:30973834 original size:19 final size:19
Alignment explanation
Indices: 30973810--30973903 Score: 161
Period size: 19 Copynumber: 4.8 Consensus size: 19
30973800 AATTTTTGAG
30973810 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
30973829 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
30973848 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
30973867 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
30973888 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
30973904 ATATATGATT
Statistics
Matches: 71, Mismatches: 2, Indels: 4
0.92 0.03 0.05
Matches are distributed among these distances:
19 52 0.73
21 19 0.27
ACGTcount: A:0.37, C:0.12, G:0.16, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:30973885 original size:40 final size:38
Alignment explanation
Indices: 30973810--30973910 Score: 161
Period size: 40 Copynumber: 2.7 Consensus size: 38
30973800 AATTTTTGAG
30973810 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
*
30973848 GATATGCAATCTTAGATATGATATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATG--ATATGCAATCCTAGATAT
30973888 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
30973911 ATTTTGTAAT
Statistics
Matches: 60, Mismatches: 1, Indels: 6
0.90 0.01 0.09
Matches are distributed among these distances:
36 5 0.08
38 20 0.33
39 2 0.03
40 33 0.55
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.36
Consensus pattern (38 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:30974121 original size:19 final size:19
Alignment explanation
Indices: 30974097--30974228 Score: 219
Period size: 19 Copynumber: 6.8 Consensus size: 19
30974087 AATTTTTGAG
30974097 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
30974116 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
30974135 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
30974154 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
30974175 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
30974194 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
30974213 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
30974229 ATATATGATT
Statistics
Matches: 105, Mismatches: 6, Indels: 4
0.91 0.05 0.03
Matches are distributed among these distances:
19 86 0.82
21 19 0.18
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:30974164 original size:59 final size:57
Alignment explanation
Indices: 30974097--30974235 Score: 219
Period size: 59 Copynumber: 2.4 Consensus size: 57
30974087 AATTTTTGAG
*
30974097 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
* *
30974154 GATATATGCAATCTTAGATATGATATGCAATCTTAGATATGATATATAATCTTAGATAT
1 G--ATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
30974213 GATATGCAATCTTAGA-AT-ATATG
1 GATATGCAATCTTAGATATGATATG
30974236 ATTTTGTAAT
Statistics
Matches: 77, Mismatches: 3, Indels: 6
0.90 0.03 0.07
Matches are distributed among these distances:
55 5 0.06
56 2 0.03
57 16 0.21
59 54 0.70
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.37
Consensus pattern (57 bp):
GATATGCAATCTTAGATATGATATGCAATCCTAGATATGATATACAATCTTAGATAT
Found at i:30974177 original size:287 final size:287
Alignment explanation
Indices: 30973654--30974190 Score: 1038
Period size: 287 Copynumber: 1.9 Consensus size: 287
30973644 ACTAATTCCT
* *
30973654 ATACTTCTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAATTTGGGCATTTTTAAAGTCTTTG
1 ATACTTCTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTAGGCATTTTTAAAGTCTTTG
*
30973719 CTCCGTTCCTGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
66 CTCCGTTCCAGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
30973784 TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
131 TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
30973849 ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGAATATATGATT
196 ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGAATATATGATT
30973914 TTGTAATCTTAGAGATTTAATTTGTAG
261 TTGTAATCTTAGAGATTTAATTTGTAG
*
30973941 ATACTTTTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTAGGCATTTTTAAAGTCTTTG
1 ATACTTCTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTAGGCATTTTTAAAGTCTTTG
30974006 CTCCGTTCCAGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
66 CTCCGTTCCAGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
30974071 TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
131 TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
30974136 ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGA
196 ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGA
30974191 TATGATATAT
Statistics
Matches: 246, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
287 246 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (287 bp):
ATACTTCTGAAGATGTTTCATGTTCCAGCAAGACCGAGCAAAATTAGGCATTTTTAAAGTCTTTG
CTCCGTTCCAGTTACACGACAACGAGCAAAGAGGGGCAGCTGTAATACCCAATTTTAGCCCGGGC
TCACATATGGAAACATAATTTTTGAGGATATGCAATCTTAGATATGATATGCAATCCTAGATATG
ATATGCAATCTTAGATATGATATATGCAATCTTAGATATGATATGCAATCTTAGAATATATGATT
TTGTAATCTTAGAGATTTAATTTGTAG
Found at i:30975011 original size:25 final size:26
Alignment explanation
Indices: 30974978--30975027 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 26
30974968 TACATGTATA
30974978 TATATTTTTTAAAACGAATATTTTCC
1 TATATTTTTTAAAACGAATATTTTCC
* *
30975004 TATATTTTTT-TAATGAATATTTTC
1 TATATTTTTTAAAACGAATATTTTC
30975028 ATATTTATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.55
26 10 0.45
ACGTcount: A:0.32, C:0.08, G:0.04, T:0.56
Consensus pattern (26 bp):
TATATTTTTTAAAACGAATATTTTCC
Found at i:30975820 original size:98 final size:98
Alignment explanation
Indices: 30975697--30975891 Score: 345
Period size: 98 Copynumber: 2.0 Consensus size: 98
30975687 AAAAATCATG
* *
30975697 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTCTT
30975762 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
* *
30975795 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGGATCGTACCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTCTT
*
30975860 AAATCTTGGATGAGTGGATGTTCTTTTAAAGT
66 AAATCTTGGATAAGTGGATGTTCTTTTAAAGT
30975892 TTTATTGTAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGAGATTCTAAAGGAATCGTACCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAGTGGATGTTCTTTTAAAGTA
Found at i:30979321 original size:21 final size:20
Alignment explanation
Indices: 30979290--30979337 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
30979280 TTTTTAATTT
*
30979290 AATTT-TTTTTAAATATATAA
1 AATTTATTTTTAAAAAT-TAA
30979310 AATTTATTTTTAAAAATTAA
1 AATTTATTTTTAAAAATTAA
*
30979330 AAATTATT
1 AATTTATT
30979338 AAAATTATTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
AATTTATTTTTAAAAATTAA
Found at i:30979626 original size:21 final size:21
Alignment explanation
Indices: 30979585--30979628 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
30979575 CCTATTTTAT
*
30979585 ATTTATTATTTTCTCTTTCTC
1 ATTTATTATTTTCTCTCTCTC
*
30979606 ATTTATTGTTTTCTTGCTCTCTC
1 ATTTATTATTTTC-T-CTCTCTC
30979629 CGACGCCTTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 1 0.05
23 6 0.32
ACGTcount: A:0.11, C:0.20, G:0.05, T:0.64
Consensus pattern (21 bp):
ATTTATTATTTTCTCTCTCTC
Found at i:30980293 original size:18 final size:17
Alignment explanation
Indices: 30980248--30980295 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
30980238 AAAATTTATA
*
30980248 AAATTGAAAAGTAAATT
1 AAATTGAAAACTAAATT
**
30980265 AAATAAAAAAACTAAATTT
1 AAAT-TGAAAACTAAA-TT
30980284 AAATTGAAAACT
1 AAATTGAAAACT
30980296 TAAAACCAAG
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 4 0.17
18 14 0.58
19 6 0.25
ACGTcount: A:0.62, C:0.04, G:0.06, T:0.27
Consensus pattern (17 bp):
AAATTGAAAACTAAATT
Found at i:30980850 original size:14 final size:14
Alignment explanation
Indices: 30980831--30980863 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
30980821 AAAATTAAAA
30980831 CACAAATTAAGTCT
1 CACAAATTAAGTCT
30980845 CACAAATTAAGTCT
1 CACAAATTAAGTCT
30980859 CACAA
1 CACAA
30980864 TGCTCAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (14 bp):
CACAAATTAAGTCT
Found at i:30982251 original size:24 final size:24
Alignment explanation
Indices: 30982224--30982293 Score: 88
Period size: 24 Copynumber: 2.9 Consensus size: 24
30982214 AAAGAAATAA
*
30982224 CAAAGATTTTATACTAATAAATGT
1 CAAATATTTTATACTAATAAATGT
* *
30982248 CAAATATATTATGCTAATAAATGT
1 CAAATATTTTATACTAATAAATGT
*
30982272 TAAATATATTT-TACTAATAAAT
1 CAAATAT-TTTATACTAATAAAT
30982294 ACTAAATCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 37 0.95
25 2 0.05
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (24 bp):
CAAATATTTTATACTAATAAATGT
Found at i:30982299 original size:24 final size:23
Alignment explanation
Indices: 30982232--30982300 Score: 75
Period size: 24 Copynumber: 2.9 Consensus size: 23
30982222 AACAAAGATT
*
30982232 TTATACTAATAAATGTCAAATATA
1 TTATACTAATAAATCT-AAATATA
* *
30982256 TTATGCTAATAAATGTTAAATATA
1 TTATACTAATAAAT-CTAAATATA
*
30982280 TTTTACTAATAAATACTAAAT
1 TTATACTAATAAAT-CTAAAT
30982301 CTTCTAGAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
24 37 0.97
25 1 0.03
ACGTcount: A:0.48, C:0.07, G:0.04, T:0.41
Consensus pattern (23 bp):
TTATACTAATAAATCTAAATATA
Found at i:30984611 original size:24 final size:24
Alignment explanation
Indices: 30984578--30984691 Score: 146
Period size: 24 Copynumber: 4.9 Consensus size: 24
30984568 AAAAATATTT
*
30984578 TTATAATAATAAAT-CTTAAATATA
1 TTATACTAATAAATAC-TAAATATA
* *
30984602 TTATGCTAATAAGTACT-AA-ATA
1 TTATACTAATAAATACTAAATATA
* *
30984624 -TATGCTAATAAGTACTAAATATA
1 TTATACTAATAAATACTAAATATA
30984647 TTATACTAATAAATACTAAATATA
1 TTATACTAATAAATACTAAATATA
30984671 TTATACTAATAAATACTAAAT
1 TTATACTAATAAATACTAAAT
30984692 CTTCTAAAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 8
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.20
22 5 0.06
23 5 0.06
24 54 0.67
25 1 0.01
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.38
Consensus pattern (24 bp):
TTATACTAATAAATACTAAATATA
Found at i:30984629 original size:21 final size:21
Alignment explanation
Indices: 30984603--30984671 Score: 93
Period size: 21 Copynumber: 3.1 Consensus size: 21
30984593 TTAAATATAT
30984603 TATGCTAATAAGTACTAAATA
1 TATGCTAATAAGTACTAAATA
30984624 TATGCTAATAAGTACTAAATATA
1 TATGCTAATAAGTACT-AA-ATA
* *
30984647 TTATACTAATAAATACTAAATA
1 -TATGCTAATAAGTACTAAATA
30984669 TAT
1 TAT
30984672 TATACTAATA
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
21 19 0.44
22 5 0.12
23 5 0.12
24 14 0.33
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (21 bp):
TATGCTAATAAGTACTAAATA
Found at i:30984633 original size:45 final size:45
Alignment explanation
Indices: 30984584--30984691 Score: 137
Period size: 45 Copynumber: 2.3 Consensus size: 45
30984574 ATTTTTATAA
* *
30984584 TAATAAAT-CTTAAATATATTATGCTAATAAGTACTAAATATATGC
1 TAATAAATAC-TAAATATATTATACTAATAAATACTAAATATATGC
* *
30984629 TAATAAGTACTAAATATATTATACTAATAAATACTAAATATATTATAC
1 TAATAAATACTAAATATATTATACTAATAAATACT-AA-ATA-TATGC
30984677 TAATAAATACTAAAT
1 TAATAAATACTAAAT
30984692 CTTCTAAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
45 30 0.56
46 3 0.06
47 3 0.06
48 18 0.33
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (45 bp):
TAATAAATACTAAATATATTATACTAATAAATACTAAATATATGC
Found at i:30984655 original size:14 final size:14
Alignment explanation
Indices: 30984636--30984679 Score: 60
Period size: 14 Copynumber: 3.4 Consensus size: 14
30984626 TGCTAATAAG
30984636 TACTAAATATATTA
1 TACTAAATATATTA
30984650 TACT-AATA-A--A
1 TACTAAATATATTA
30984660 TACTAAATATATTA
1 TACTAAATATATTA
30984674 TACTAA
1 TACTAA
30984680 TAAATACTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
10 5 0.19
11 4 0.15
12 2 0.08
13 4 0.15
14 11 0.42
ACGTcount: A:0.52, C:0.09, G:0.00, T:0.39
Consensus pattern (14 bp):
TACTAAATATATTA
Found at i:30985043 original size:49 final size:49
Alignment explanation
Indices: 30984891--30985043 Score: 191
Period size: 49 Copynumber: 3.1 Consensus size: 49
30984881 ATTGATAAGT
* ** *
30984891 CTGCCTACATCCACGGTGCAGTTATTCTGCAAAATATAGTACAATAAAG
1 CTGCCTACATCCATGGTGTTGTTATTCTGAAAAATATAGTACAATAAAG
* * *
30984940 CTACCTACATCCATGGT-TCTATTATTCTGAAAATTATAGTACAATAAAG
1 CTGCCTACATCCATGGTGT-TGTTATTCTGAAAAATATAGTACAATAAAG
* * * *
30984989 TTGCCTACAACCATGGTGTTGTTATTTTGAAAAATATAGTACAATAAAA
1 CTGCCTACATCCATGGTGTTGTTATTCTGAAAAATATAGTACAATAAAG
30985038 CTGCCT
1 CTGCCT
30985044 TGAAGGTGTG
Statistics
Matches: 87, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
49 86 0.99
50 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.32
Consensus pattern (49 bp):
CTGCCTACATCCATGGTGTTGTTATTCTGAAAAATATAGTACAATAAAG
Found at i:30991491 original size:85 final size:86
Alignment explanation
Indices: 30991311--30991502 Score: 244
Period size: 85 Copynumber: 2.2 Consensus size: 86
30991301 TCAAAACTAT
* * * *
30991311 CCTCATGAGTTTAAGTGATAAGTTGTGTAATCAGTGAAACTCCCTTCGTTAACTTAAGTGATAAG
1 CCTCATGAGCTTAAGTGATAAGTTGAGTAATCAGTGAAACTCCCTTCGTGAACTTAAGTGATAAA
* * *
30991376 CTGTGTAACCAATGAAGCTTC
66 CTATGTAACCAATAAAGCTCC
* * *
30991397 CCTTATGAGCTTAAATGATAAGTTGAGTAATTAGT-AAAGCTCCC-TCGTGAACTTAAGTGATAA
1 CCTCATGAGCTTAAGTGATAAGTTGAGTAATCAGTGAAA-CTCCCTTCGTGAACTTAAGTGATAA
* *
30991460 ACTATGTAATCAGTAAAGCTCC
65 ACTATGTAACCAATAAAGCTCC
*
30991482 CCTCGTGAGCTTAAGTGATAA
1 CCTCATGAGCTTAAGTGATAA
30991503 ATTATGTATC
Statistics
Matches: 90, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
85 55 0.61
86 35 0.39
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.31
Consensus pattern (86 bp):
CCTCATGAGCTTAAGTGATAAGTTGAGTAATCAGTGAAACTCCCTTCGTGAACTTAAGTGATAAA
CTATGTAACCAATAAAGCTCC
Found at i:30991503 original size:43 final size:43
Alignment explanation
Indices: 30991285--30991584 Score: 193
Period size: 43 Copynumber: 7.0 Consensus size: 43
30991275 AAACAGTTTT
* * ** * *
30991285 ATAAGCTGTGTAATCA-TCAAAACTATCCTCATGAGTTTAAGTG
1 ATAAGCTATGTAATCAGT-AAAGCTCCCCTCGTGAGCTTAAGTG
* * * * *
30991328 ATAAGTTGTGTAATCAGTGAAA-CTCCCTTCGTTAACTTAAGTG
1 ATAAGCTATGTAATCAGT-AAAGCTCCCCTCGTGAGCTTAAGTG
* * * * * ** *
30991371 ATAAGCTGTGTAACCAATGAAGCTTCCCTTATGAGCTTAAATG
1 ATAAGCTATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
* * *
30991414 ATAAGTTGA-GTAATTAGTAAAGCT-CCCTCGTGAACTTAAGTG
1 ATAAGCT-ATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
*
30991456 ATAAACTATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
1 ATAAGCTATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
** ***
30991499 ATAAATTATGT-ATCAACGAAGCTCCCCAT-GTGAGCTTAAGTG
1 ATAAGCTATGTAATCAGTAAAGCTCCCC-TCGTGAGCTTAAGTG
* * * ** *
30991541 ACAACCTATGT-ATTAGCGAAGCTCCCCAT-GCGAGCTTAAGTG
1 ATAAGCTATGTAATCAGTAAAGCTCCCC-TCGTGAGCTTAAGTG
30991583 AT
1 AT
30991585 TGTGCTCCTC
Statistics
Matches: 206, Mismatches: 45, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
41 1 0.00
42 98 0.48
43 103 0.50
44 4 0.02
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (43 bp):
ATAAGCTATGTAATCAGTAAAGCTCCCCTCGTGAGCTTAAGTG
Found at i:30991521 original size:42 final size:42
Alignment explanation
Indices: 30991443--30991584 Score: 178
Period size: 42 Copynumber: 3.4 Consensus size: 42
30991433 AAGCTCCCTC
* **
30991443 GTGAACTTAAGTGATAAACTATGTAATCAGTAAAGCTCCCC-T
1 GTGAGCTTAAGTGATAAACTATGT-ATCAGCGAAGCTCCCCAT
* *
30991485 CGTGAGCTTAAGTGATAAATTATGTATCAACGAAGCTCCCCAT
1 -GTGAGCTTAAGTGATAAACTATGTATCAGCGAAGCTCCCCAT
* * *
30991528 GTGAGCTTAAGTGACAACCTATGTATTAGCGAAGCTCCCCAT
1 GTGAGCTTAAGTGATAAACTATGTATCAGCGAAGCTCCCCAT
*
30991570 GCGAGCTTAAGTGAT
1 GTGAGCTTAAGTGAT
30991585 TGTGCTCCTC
Statistics
Matches: 86, Mismatches: 12, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
42 63 0.73
43 23 0.27
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (42 bp):
GTGAGCTTAAGTGATAAACTATGTATCAGCGAAGCTCCCCAT
Found at i:30994909 original size:24 final size:25
Alignment explanation
Indices: 30994860--30994922 Score: 74
Period size: 24 Copynumber: 2.5 Consensus size: 25
30994850 AGAAAAAACC
*
30994860 ATAAAAAATAAAAATATAGTTCAAAAG
1 ATAAAAAAT--AAATATAGTTCAAAAA
* *
30994887 ATAAAAACTAAATA-AGTTTAAAAA
1 ATAAAAAATAAATATAGTTCAAAAA
30994911 ATAAAAAATAAA
1 ATAAAAAATAAA
30994923 CATAAAAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
24 19 0.59
25 5 0.16
27 8 0.25
ACGTcount: A:0.70, C:0.03, G:0.05, T:0.22
Consensus pattern (25 bp):
ATAAAAAATAAATATAGTTCAAAAA
Found at i:30994927 original size:6 final size:6
Alignment explanation
Indices: 30994907--30994941 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
30994897 AATAAGTTTA
*
30994907 AAAAAT AAAAAAT AAACAT AAAAAT AAAAAT AAAA
1 AAAAAT -AAAAAT AAAAAT AAAAAT AAAAAT AAAA
30994942 CAAATAAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.83, C:0.03, G:0.00, T:0.14
Consensus pattern (6 bp):
AAAAAT
Found at i:30995292 original size:17 final size:17
Alignment explanation
Indices: 30995270--30995303 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
30995260 AAGTTGTTCG
30995270 ATCATCCTCATATGTGT
1 ATCATCCTCATATGTGT
30995287 ATCATCCTCATATGTGT
1 ATCATCCTCATATGTGT
30995304 CTTACTCGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.12, T:0.41
Consensus pattern (17 bp):
ATCATCCTCATATGTGT
Found at i:31002967 original size:15 final size:15
Alignment explanation
Indices: 31002947--31002976 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
31002937 CTCTTTCGAG
31002947 AGTAAGAATAACTGA
1 AGTAAGAATAACTGA
31002962 AGTAAGAATAACTGA
1 AGTAAGAATAACTGA
31002977 CTCTAGGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (15 bp):
AGTAAGAATAACTGA
Found at i:31006115 original size:23 final size:23
Alignment explanation
Indices: 31006088--31006252 Score: 145
Period size: 23 Copynumber: 7.2 Consensus size: 23
31006078 GGCAAGTTAC
*
31006088 CTGTGAAGCCTTTGTGGCGCATT
1 CTGTGAAGCCTTTGTGGCGTATT
**
31006111 CTGTGAAGCCTTTGTGATGTATT
1 CTGTGAAGCCTTTGTGGCGTATT
* *
31006134 TTGT-AGAGCATTTGTGGCGTATT
1 CTGTGA-AGCCTTTGTGGCGTATT
* * * *
31006157 CTGTGGAGCATTTATGGCATATT
1 CTGTGAAGCCTTTGTGGCGTATT
* * *
31006180 CTGTGGAGACTTTGTGGCATATT
1 CTGTGAAGCCTTTGTGGCGTATT
*
31006203 CTGT-AGAGCCTTTGTGGCCTATT
1 CTGTGA-AGCCTTTGTGGCGTATT
* * **
31006226 CTATGAAGCCTTTATGGTATATT
1 CTGTGAAGCCTTTGTGGCGTATT
31006249 CTGT
1 CTGT
31006253 AACTCCTAAA
Statistics
Matches: 116, Mismatches: 22, Indels: 8
0.79 0.15 0.05
Matches are distributed among these distances:
22 1 0.01
23 114 0.98
24 1 0.01
ACGTcount: A:0.18, C:0.15, G:0.27, T:0.41
Consensus pattern (23 bp):
CTGTGAAGCCTTTGTGGCGTATT
Found at i:31014637 original size:28 final size:28
Alignment explanation
Indices: 31014605--31014664 Score: 120
Period size: 28 Copynumber: 2.1 Consensus size: 28
31014595 ATCCCCATGC
31014605 CAAAGGTGTACAAAACCATCATTGTTTG
1 CAAAGGTGTACAAAACCATCATTGTTTG
31014633 CAAAGGTGTACAAAACCATCATTGTTTG
1 CAAAGGTGTACAAAACCATCATTGTTTG
31014661 CAAA
1 CAAA
31014665 TGGATTTCCC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (28 bp):
CAAAGGTGTACAAAACCATCATTGTTTG
Found at i:31017235 original size:11 final size:11
Alignment explanation
Indices: 31017219--31017250 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
31017209 CTCTAATATT
31017219 CTCTCAAATTC
1 CTCTCAAATTC
*
31017230 CTCTCAAGTTC
1 CTCTCAAATTC
31017241 CTCTCAAATT
1 CTCTCAAATT
31017251 TCTATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.25, C:0.34, G:0.03, T:0.38
Consensus pattern (11 bp):
CTCTCAAATTC
Found at i:31019089 original size:18 final size:18
Alignment explanation
Indices: 31019062--31019099 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
31019052 TGCCAGGTGC
*
31019062 GTATCCTAACCCTTT-TAT
1 GTATCATAA-CCTTTATAT
31019080 GTATCATAACCTTTATAT
1 GTATCATAACCTTTATAT
31019098 GT
1 GT
31019100 TTCCTTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.26, C:0.21, G:0.08, T:0.45
Consensus pattern (18 bp):
GTATCATAACCTTTATAT
Found at i:31019367 original size:21 final size:21
Alignment explanation
Indices: 31019321--31019382 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
31019311 CCAACACTGA
*
31019321 CAACCAG-ATCCCCTACCGGAG
1 CAACCAGAATCCCC-ACCAGAG
* *
31019342 GAACCAGAATCCCCGCCAGAG
1 CAACCAGAATCCCCACCAGAG
* *
31019363 CAACCATAACCCCCACCAGA
1 CAACCAGAATCCCCACCAGA
31019383 AGCTGGACAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
21 27 0.82
22 6 0.18
ACGTcount: A:0.34, C:0.44, G:0.16, T:0.06
Consensus pattern (21 bp):
CAACCAGAATCCCCACCAGAG
Found at i:31019554 original size:32 final size:28
Alignment explanation
Indices: 31019507--31019587 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 28
31019497 TTATTTGATG
* * *
31019507 TAATAAAATAGAAATTCTTCTATATTATT
1 TAATATAATAGAAATTCTTATACATT-TT
31019536 TCATATACTAATAGAAATTTACTTATACATTTT
1 T-A-ATA-TAATAGAAA-TT-CTTATACATTTT
31019569 TAATATAATAGAAATTCTT
1 TAATATAATAGAAATTCTT
31019588 TTAAATAAGG
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
28 3 0.07
29 3 0.07
30 10 0.23
31 6 0.14
32 9 0.20
33 5 0.11
34 8 0.18
ACGTcount: A:0.43, C:0.09, G:0.04, T:0.44
Consensus pattern (28 bp):
TAATATAATAGAAATTCTTATACATTTT
Found at i:31022991 original size:126 final size:126
Alignment explanation
Indices: 31022766--31023812 Score: 1779
Period size: 126 Copynumber: 8.3 Consensus size: 126
31022756 CCAAACATGC
* * **
31022766 GCTACTGTAGCAAAAGCACGTCCATGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
* *
31022831 GCTTAAAGCGTTTTTGACACTATTTTCTCAGAAACGTCTACTCAAAATTATTTTTTCAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
**
31022892 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
* * *
31022957 CCTTAAAGCGTTTTTGACACTATTTGCTTAGAAACGTCTACTCAAAATTATTTTTTCAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
* ** *
31023018 GCTACTGTAGCAAAAGCGCGTCCATGTGGGAGCTTCTTTCAGTACTTCTGCTAACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
*
31023083 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTTAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
* *
31023144 GCTACTGTAGCAAAAGCGTGTCCACGTGGGAGCTTCTTTCAAAACTTCTACTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
* *
31023209 GCTTAAAGCGTTTTTGACACTATTTTCTCAGAAACGTCTACTCGAAATTATTTTTTTAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
31023270 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
*
31023335 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCATGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
* * **
31023396 GCTACTGTAGCAAAAGCGCATCCATGTGGGAGCTTCTTTCAGTACTTCTGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
*
31023461 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTTAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
* *
31023522 GCTACTGTAGCAAAAACGCGTCCACGTGGGAGCTTCTTTCAAAACTTATGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
*
31023587 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTTAGGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
* *
31023648 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAATTTCCGCTGACAAAGCATCCT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
* * *
31023713 GGTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTGTTTCATGA
66 GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
*
31023774 GCTACTGTAGCAAAAGTGCGTCCACGTGGGAGCTTCTTT
1 GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTT
31023813 AAATTAACAA
Statistics
Matches: 877, Mismatches: 44, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
126 877 1.00
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (126 bp):
GCTACTGTAGCAAAAGCGCGTCCACGTGGGAGCTTCTTTCAAAACTTCTGCTGACAAAGCATCCT
GCTTAAAGCGTTTTTGACACTATTTGCTCAGAAACGTCTACTCGAAATTATTTTTTCAGGA
Found at i:31023995 original size:96 final size:96
Alignment explanation
Indices: 31023830--31024064 Score: 319
Period size: 96 Copynumber: 2.4 Consensus size: 96
31023820 CAAATAATTT
* * * *
31023830 AAGTAACCCTAAACCTTAACTTATTTGAGTTTTTACTTAAAAACTCTAAACTCTAAACCCTAACC
1 AAGTAACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACTAAACCCTAACC
* * *
31023895 TAATTTT-ATAAAAAATTATAATTAATTTAGTC
65 TAATTTTAAAAAAAAATT-TAATTAAATTACTC
* * * *
31023927 AAGTAACCCTAAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTTAACACTAAATCCTAATCT
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAACCT
31023992 AATTTTAAAAAAAAATTTAATTAAATTACTC
66 AATTTTAAAAAAAAATTTAATTAAATTACTC
* * *
31024023 AAGTAAACCTAAACCCTAATTTAATTGATTTTTTCTTAAAAA
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAA
31024065 ATAATAAACA
Statistics
Matches: 123, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
96 88 0.72
97 35 0.28
ACGTcount: A:0.42, C:0.17, G:0.03, T:0.37
Consensus pattern (96 bp):
AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAACCT
AATTTTAAAAAAAAATTTAATTAAATTACTC
Found at i:31024086 original size:96 final size:96
Alignment explanation
Indices: 31023830--31024098 Score: 308
Period size: 96 Copynumber: 2.8 Consensus size: 96
31023820 CAAATAATTT
* * * * * *
31023830 AAGTAACCCTAAACCTTAACTTATTTGAGTTTTTACTTAAAAACTCTAAACTCTAAACCCTAACC
1 AAGTAACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAAATCTAAACACTAAAACCTAATC
* * *
31023895 TAATTTTATAAAAAATTATAATTAATTTAGTC
65 TAATTTTAAAAAAAATTATAATTAAATTACTC
* ** * *
31023927 AAGTAACCCTAAACCCTAATTTATTTGATTTTTCCTTAAAAACCCTTAACACTAAATCCTAATCT
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAAATCTAAACACTAAAACCTAATCT
31023992 AATTTTAAAAAAAAATT-TAATTAAATTACTC
66 AATTTT-AAAAAAAATTATAATTAAATTACTC
* * * * *
31024023 AAGTAAACCTAAACCCTAATTTAATTGATTTTTTCTTAAAAAATAATAAACAC-AAAACTTAATC
1 AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAAAT-CTAAACACTAAAACCTAATC
* *
31024087 CAATTTTGAAAA
65 TAATTTTAAAAA
31024099 TTTTATAATT
Statistics
Matches: 148, Mismatches: 22, Indels: 6
0.84 0.12 0.03
Matches are distributed among these distances:
95 4 0.03
96 103 0.70
97 41 0.28
ACGTcount: A:0.44, C:0.17, G:0.03, T:0.36
Consensus pattern (96 bp):
AAGTAACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAAATCTAAACACTAAAACCTAATCT
AATTTTAAAAAAAATTATAATTAAATTACTC
Found at i:31025543 original size:16 final size:16
Alignment explanation
Indices: 31025522--31025552 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
31025512 CGATTAAATT
*
31025522 TTTTTTGGAATTTCGA
1 TTTTTTGAAATTTCGA
31025538 TTTTTTGAAATTTCG
1 TTTTTTGAAATTTCG
31025553 GTTAACGGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.06, G:0.16, T:0.58
Consensus pattern (16 bp):
TTTTTTGAAATTTCGA
Found at i:31029110 original size:68 final size:68
Alignment explanation
Indices: 31029030--31029171 Score: 275
Period size: 68 Copynumber: 2.1 Consensus size: 68
31029020 TGACATTGTT
31029030 TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACAATT
1 TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACAATT
31029095 ACG
66 ACG
*
31029098 TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACGATT
1 TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACAATT
31029163 ACG
66 ACG
31029166 TATATC
1 TATATC
31029172 AAGCCTGAAT
Statistics
Matches: 73, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 73 1.00
ACGTcount: A:0.39, C:0.08, G:0.18, T:0.36
Consensus pattern (68 bp):
TATATCTGAAATATTACGATTGAATTGGTGATAAAATGGATTGAAATGTAAACTGTTATACAATT
ACG
Found at i:31032800 original size:4 final size:4
Alignment explanation
Indices: 31032791--31032859 Score: 56
Period size: 4 Copynumber: 17.2 Consensus size: 4
31032781 TAAGTAATAA
*
31032791 AAAG AAAG AAAG ATAG AAACG AAACAG AAAG -AAG AAAG AAAG -AA- AAAG
1 AAAG AAAG AAAG AAAG AAA-G -AA-AG AAAG AAAG AAAG AAAG AAAG AAAG
*
31032839 AAA- AAGGG AAAG AAAG AAAG A
1 AAAG AA-AG AAAG AAAG AAAG A
31032860 GAAAGACAAG
Statistics
Matches: 53, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
3 9 0.17
4 35 0.66
5 5 0.09
6 3 0.06
7 1 0.02
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (4 bp):
AAAG
Found at i:31032830 original size:22 final size:21
Alignment explanation
Indices: 31032789--31032865 Score: 84
Period size: 22 Copynumber: 3.5 Consensus size: 21
31032779 AATAAGTAAT
*
31032789 AAAAAGAAAGAAAGATAGAAACG
1 AAAAAGAAAG-AAGAAAGAAA-G
*
31032812 AAACAGAAAGAAGAAAGAAAG
1 AAAAAGAAAGAAGAAAGAAAG
31032833 AAAAAGAAA-AAGGGAAAGAAAG
1 AAAAAGAAAGAA--GAAAGAAAG
*
31032855 AAAGAGAAAGA
1 AAAAAGAAAGA
31032866 CAAGGCTAGG
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
20 2 0.04
21 9 0.19
22 26 0.55
23 10 0.21
ACGTcount: A:0.71, C:0.03, G:0.25, T:0.01
Consensus pattern (21 bp):
AAAAAGAAAGAAGAAAGAAAG
Found at i:31033804 original size:40 final size:40
Alignment explanation
Indices: 31033683--31033821 Score: 140
Period size: 37 Copynumber: 3.5 Consensus size: 40
31033673 AACTTTGAGT
* * *
31033683 CGATGAGACACTGGGTGTCAATTTATTACTTCAGATTTATT
1 CGATGAGACACTAGGTGTCAATTTACTACTTC-GATTTATC
* * * * *
31033724 CAATGAGGCACTAGGTGCCAATTTACT--TT-GGTTTAAC
1 CGATGAGACACTAGGTGTCAATTTACTACTTCGATTTATC
* *
31033761 CGATGAGACACTAAGTGTCAATTTACTACTTCGAATTATC
1 CGATGAGACACTAGGTGTCAATTTACTACTTCGATTTATC
* *
31033801 CGATGAGGCACTGGGTGTCAA
1 CGATGAGACACTAGGTGTCAA
31033822 ACTGGTGTGT
Statistics
Matches: 77, Mismatches: 18, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
37 28 0.36
39 4 0.05
40 23 0.30
41 22 0.29
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.32
Consensus pattern (40 bp):
CGATGAGACACTAGGTGTCAATTTACTACTTCGATTTATC
Found at i:31036290 original size:7 final size:7
Alignment explanation
Indices: 31036260--31036289 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
31036250 CCAATATCTC
31036260 ATACAAT
1 ATACAAT
31036267 ATACAAT
1 ATACAAT
31036274 ATACAAT
1 ATACAAT
*
31036281 ATTCAAT
1 ATACAAT
31036288 AT
1 AT
31036290 TTTATTTCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (7 bp):
ATACAAT
Found at i:31036430 original size:58 final size:58
Alignment explanation
Indices: 31036315--31036430 Score: 205
Period size: 58 Copynumber: 2.0 Consensus size: 58
31036305 TGCAATTTAA
*
31036315 TACATTGTCACTAGTGATCATTCAATTCAAATTCACATCTCATAAAATTGTTTCAAGG
1 TACATTGTCACTAGTGATCATTCAATTCAAATTCACATATCATAAAATTGTTTCAAGG
* *
31036373 TACATTGTCACTAGTGATCATTCAATTTAAATTCGCATATCATAAAATTGTTTCAAGG
1 TACATTGTCACTAGTGATCATTCAATTCAAATTCACATATCATAAAATTGTTTCAAGG
31036431 AATAGCTTAC
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.34, C:0.17, G:0.11, T:0.37
Consensus pattern (58 bp):
TACATTGTCACTAGTGATCATTCAATTCAAATTCACATATCATAAAATTGTTTCAAGG
Found at i:31038349 original size:27 final size:26
Alignment explanation
Indices: 31038293--31038349 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
31038283 GATTTTAATG
** * *
31038293 TTTTCAAAATTTTTGATATATTATAT
1 TTTTCAAAATTTTTGATATAAAACAA
*
31038319 TTTTTAAAATTTTTGTATATAAAACAA
1 TTTTCAAAATTTTTG-ATATAAAACAA
31038346 TTTT
1 TTTT
31038350 AATATGAGCA
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.56
Consensus pattern (26 bp):
TTTTCAAAATTTTTGATATAAAACAA
Found at i:31040402 original size:48 final size:48
Alignment explanation
Indices: 31040346--31040442 Score: 176
Period size: 48 Copynumber: 2.0 Consensus size: 48
31040336 CGATTGTCCC
31040346 TTCTGTTCACTGATGATTAATCCCAAGTGTAATTTTCATTTTTAAAAA
1 TTCTGTTCACTGATGATTAATCCCAAGTGTAATTTTCATTTTTAAAAA
* *
31040394 TTCTGTTCACTGATGATTGATCCCAAGTGTTATTTTCATTTTTAAAAA
1 TTCTGTTCACTGATGATTAATCCCAAGTGTAATTTTCATTTTTAAAAA
31040442 T
1 T
31040443 CCTCTCGGCA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.29, C:0.14, G:0.11, T:0.45
Consensus pattern (48 bp):
TTCTGTTCACTGATGATTAATCCCAAGTGTAATTTTCATTTTTAAAAA
Found at i:31050773 original size:38 final size:38
Alignment explanation
Indices: 31050687--31050773 Score: 95
Period size: 38 Copynumber: 2.3 Consensus size: 38
31050677 TTATAAAAAA
* ** * *
31050687 AGTCCCTAAAATTTACATGTTTACAATTTTTACAATTT
1 AGTCCCTAAAATCTACAAATTTACAAATTTTACAATTC
**
31050725 AGTCTTTAAAATCTA-AAATTTACACAATTTTACAATTC
1 AGTCCCTAAAATCTACAAATTTACA-AATTTTACAATTC
31050763 AGTCCCTAAAA
1 AGTCCCTAAAA
31050774 AGCAAATTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
37 7 0.18
38 32 0.82
ACGTcount: A:0.39, C:0.17, G:0.05, T:0.39
Consensus pattern (38 bp):
AGTCCCTAAAATCTACAAATTTACAAATTTTACAATTC
Found at i:31056106 original size:7 final size:7
Alignment explanation
Indices: 31056094--31056127 Score: 68
Period size: 7 Copynumber: 4.9 Consensus size: 7
31056084 ATTAAGTAAG
31056094 AAAATTT
1 AAAATTT
31056101 AAAATTT
1 AAAATTT
31056108 AAAATTT
1 AAAATTT
31056115 AAAATTT
1 AAAATTT
31056122 AAAATT
1 AAAATT
31056128 AAACTATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (7 bp):
AAAATTT
Found at i:31056875 original size:29 final size:30
Alignment explanation
Indices: 31056813--31056875 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
31056803 AAAATCTTAG
31056813 ATCCATGAATTTAAGTAAAATTAACAGTTTAA
1 ATCCATGAATTT-A-TAAAATTAACAGTTTAA
31056845 ATCCATGAATTT-TAAAATTAACA-TTTGAA
1 ATCCATGAATTTATAAAATTAACAGTTT-AA
31056874 AT
1 AT
31056876 TGAAATTGAG
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
28 3 0.10
29 15 0.50
32 12 0.40
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.37
Consensus pattern (30 bp):
ATCCATGAATTTATAAAATTAACAGTTTAA
Found at i:31057951 original size:20 final size:20
Alignment explanation
Indices: 31057926--31057966 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
31057916 ATTCAGAAGA
31057926 ATTTCACACATATATGTTAT
1 ATTTCACACATATATGTTAT
31057946 ATTTCACACATATATGTTAT
1 ATTTCACACATATATGTTAT
31057966 A
1 A
31057967 AACACAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.15, G:0.05, T:0.44
Consensus pattern (20 bp):
ATTTCACACATATATGTTAT
Found at i:31061058 original size:28 final size:28
Alignment explanation
Indices: 31061026--31061140 Score: 185
Period size: 28 Copynumber: 4.1 Consensus size: 28
31061016 TAGTACTGTA
*
31061026 TGGGCCTTAGCCCGATACAGTAACAGTG
1 TGGGCCTTAGCCCAATACAGTAACAGTG
* * *
31061054 TGGGCCTTAGCCCGATATAGTAACAGTA
1 TGGGCCTTAGCCCAATACAGTAACAGTG
*
31061082 TGAGCCTTAGCCCAATACAGTAACAGTG
1 TGGGCCTTAGCCCAATACAGTAACAGTG
31061110 TGGGCCTTAGCCCAATACAGTAACAGTG
1 TGGGCCTTAGCCCAATACAGTAACAGTG
31061138 TGG
1 TGG
31061141 TAACACAACC
Statistics
Matches: 80, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 80 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (28 bp):
TGGGCCTTAGCCCAATACAGTAACAGTG
Found at i:31061268 original size:26 final size:26
Alignment explanation
Indices: 31061238--31061288 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
31061228 CACCAATGTC
31061238 GCAGCAAAGCTACCAGTAAAAGTATG
1 GCAGCAAAGCTACCAGTAAAAGTATG
* * *
31061264 GCAGCGAAGCTGCCAGTAACAGTAT
1 GCAGCAAAGCTACCAGTAAAAGTAT
31061289 ATGTGGCAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.37, C:0.22, G:0.25, T:0.16
Consensus pattern (26 bp):
GCAGCAAAGCTACCAGTAAAAGTATG
Found at i:31062402 original size:19 final size:18
Alignment explanation
Indices: 31062378--31062424 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 18
31062368 GTTCTCAGTC
31062378 AAAAGGAAAACA-AAATAAT
1 AAAAGGAAAA-ATAAA-AAT
31062397 AAAAGGTAAAAATAAAAAT
1 AAAAGG-AAAAATAAAAAT
31062416 AGAAAGGAA
1 A-AAAGGAA
31062425 GAGAAGAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.72, C:0.02, G:0.15, T:0.11
Consensus pattern (18 bp):
AAAAGGAAAAATAAAAAT
Found at i:31064161 original size:25 final size:25
Alignment explanation
Indices: 31064096--31064162 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
31064086 GTCATTACGG
*
31064096 TTACCGATTCTCAGATCGTAAAAGC
1 TTACCGATTCTCAGCTCGTAAAAGC
* * *
31064121 TTACCGATT-TGTAGCTCGTGAGAGC
1 TTACCGATTCT-CAGCTCGTAAAAGC
*
31064146 TTACCAATTCTCAGCTC
1 TTACCGATTCTCAGCTC
31064163 ATATGAGCTT
Statistics
Matches: 34, Mismatches: 6, Indels: 4
0.77 0.14 0.09
Matches are distributed among these distances:
24 1 0.03
25 32 0.94
26 1 0.03
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.31
Consensus pattern (25 bp):
TTACCGATTCTCAGCTCGTAAAAGC
Found at i:31064212 original size:25 final size:25
Alignment explanation
Indices: 31064183--31064248 Score: 82
Period size: 25 Copynumber: 2.6 Consensus size: 25
31064173 ATCGAGTCCA
31064183 AGCTCGTATGAGC-TGACCGATTTAC
1 AGCTCGTATGAGCAT-ACCGATTTAC
* *
31064208 GGCTCGTGA-GAGCATACCGATTTAT
1 AGCTCGT-ATGAGCATACCGATTTAC
31064233 AGCTCGTATGAGCATA
1 AGCTCGTATGAGCATA
31064249 AATGTACAGG
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
24 1 0.03
25 32 0.91
26 2 0.06
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (25 bp):
AGCTCGTATGAGCATACCGATTTAC
Found at i:31066054 original size:37 final size:35
Alignment explanation
Indices: 31066002--31066072 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 35
31065992 ATTTCAAAAA
*
31066002 TAATATTATTTTAATAGT-TTAGTATTTAATTTAATG
1 TAATATTATCTTAATAGTATT-GTA-TTAATTTAATG
*
31066038 TAATACTTATCTTAATAGTATTTTATTAATTTAAT
1 TAATA-TTATCTTAATAGTATTGTATTAATTTAAT
31066073 ATTAAAGTGA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 15 0.48
37 14 0.45
38 2 0.06
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.55
Consensus pattern (35 bp):
TAATATTATCTTAATAGTATTGTATTAATTTAATG
Found at i:31066706 original size:21 final size:21
Alignment explanation
Indices: 31066662--31066706 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
31066652 ATTTGAGACA
* * *
31066662 TTTATTTTTCTTCTTCTTTTC
1 TTTATTTTTCTTATTCTGTCC
31066683 TTTATTTTTCTTATTCTGTCC
1 TTTATTTTTCTTATTCTGTCC
31066704 TTT
1 TTT
31066707 TTGGGCCTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.07, C:0.18, G:0.02, T:0.73
Consensus pattern (21 bp):
TTTATTTTTCTTATTCTGTCC
Found at i:31067337 original size:154 final size:147
Alignment explanation
Indices: 31067111--31067521 Score: 560
Period size: 154 Copynumber: 2.8 Consensus size: 147
31067101 AGTTTTGATT
* *
31067111 TTTTTTAAAAGAGAAAGTTTAGATTTT-AACAAATAAAAATTTG-TTTTTTTAGTTATTTTAAAG
1 TTTTTTAAAAGAGAAAGTTTAGATTTTGAA-AAATAAAAATATGTTTTTTTTAGTAATTTTAAAG
* * *** * *
31067174 GAAAATTTAAAATTTTAAAACAGTTTTTTTATTTTTTTTCAACTATTTCAAAGTAAAAGCTTTAA
65 GAAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAA
* *
31067239 TTTTTAAGAAAAATAGTATT
130 TCTTTAAGAAAAATAG--TG
*
31067259 TTTTTTCAAAAAAAGGAGAAAGTTTAGTTTTTGAAAAATAAAAATATGTTTTTTTTAGTAATTTT
1 TTTTTT----AAAA-GAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTAATTTT
* *
31067324 AAAGGAAAGTTTAAAATTTTAAAATAAAGTTTTGATTTCTTTTCAACTACTTCAAAATAAAAGCT
61 AAAGGAAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCT
31067389 TTAATCTTTAAGAAAAATAGTG
126 TTAATCTTTAAGAAAAATAGTG
* * **
31067411 TTTTTT-AAAGAGAAAATTTAGATTTTGAAAAATAAAAATATGTTTTTTTAAGCCATTTTAAAGG
1 TTTTTTAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTAATTTTAAAGG
31067475 AAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTT-AACTATTTC
66 AAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTTC
31067522 GGAGCCGTTG
Statistics
Matches: 235, Mismatches: 21, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
145 8 0.03
146 87 0.37
147 3 0.01
148 6 0.03
152 11 0.05
153 28 0.12
154 92 0.39
ACGTcount: A:0.41, C:0.04, G:0.10, T:0.44
Consensus pattern (147 bp):
TTTTTTAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAATATGTTTTTTTTAGTAATTTTAAAGG
AAAGTTTAAAATTTTAAAATAAAGTTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAAT
CTTTAAGAAAAATAGTG
Found at i:31067352 original size:20 final size:20
Alignment explanation
Indices: 31067318--31067355 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
31067308 TTTTTTTAGT
*
31067318 AATTTTAAAGGAAAGTTTAA
1 AATTTTAAAAGAAAGTTTAA
*
31067338 AATTTTAAAATAAAGTTT
1 AATTTTAAAAGAAAGTTT
31067356 TGATTTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.11, T:0.39
Consensus pattern (20 bp):
AATTTTAAAAGAAAGTTTAA
Found at i:31068450 original size:11 final size:11
Alignment explanation
Indices: 31068434--31068459 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
31068424 TGTAAGATTA
31068434 AAATTAGTTTT
1 AAATTAGTTTT
31068445 AAATTAGTTTT
1 AAATTAGTTTT
31068456 AAAT
1 AAAT
31068460 ATTGTATAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (11 bp):
AAATTAGTTTT
Found at i:31069517 original size:4 final size:4
Alignment explanation
Indices: 31069508--31069549 Score: 66
Period size: 4 Copynumber: 10.2 Consensus size: 4
31069498 ATGTGTTAAA
*
31069508 TATT TATT TATT TATT TATT TATT TATT TGTT TATT TCATT T
1 TATT TATT TATT TATT TATT TATT TATT TATT TATT T-ATT T
31069550 CCTTATCCTT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
4 31 0.89
5 4 0.11
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:31080087 original size:34 final size:34
Alignment explanation
Indices: 31080017--31080098 Score: 91
Period size: 35 Copynumber: 2.4 Consensus size: 34
31080007 ATTTCGAAAA
31080017 AAGAA-AAAAAAAGAAAAAATAGGGAAAGTGAAT
1 AAGAACAAAAAAAGAAAAAATAGGGAAAGTGAAT
*
31080050 AAGAAGCAAAAAAAGAAAGGAAATA-GG-AAG-GAGT
1 AAGAA-CAAAAAAAGAAA--AAATAGGGAAAGTGAAT
31080084 AAGAACAAAGAAAAG
1 AAGAACAAA-AAAAG
31080099 TGATTGAGAG
Statistics
Matches: 43, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
33 9 0.21
34 13 0.30
35 14 0.33
36 2 0.05
37 5 0.12
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.06
Consensus pattern (34 bp):
AAGAACAAAAAAAGAAAAAATAGGGAAAGTGAAT
Found at i:31080661 original size:18 final size:17
Alignment explanation
Indices: 31080635--31080668 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
31080625 AATCAAGAAA
31080635 AAACAAAAAAAAATAAAG
1 AAAC-AAAAAAAATAAAG
*
31080653 AAACCAAAAAAATAAA
1 AAACAAAAAAAATAAA
31080669 AAGAGAGCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.82, C:0.09, G:0.03, T:0.06
Consensus pattern (17 bp):
AAACAAAAAAAATAAAG
Found at i:31081124 original size:42 final size:42
Alignment explanation
Indices: 31081065--31081319 Score: 339
Period size: 42 Copynumber: 6.1 Consensus size: 42
31081055 AAGGAGAACA
* *
31081065 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* ** *
31081107 TTCATTGCATTTAGAGGCCCAAATGTGGAGGTTCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * *
31081149 TTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * *
31081191 TTCATTGTATTTAGAGGCCCAGGTATTGAGGTCCATTCACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
* * * * *
31081233 TTCATTGCATTTAGAGACCTAAGTGTAGAGGTCTATTGACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
31081275 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
1 TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
31081317 TTC
1 TTC
31081320 TAGTTTACTT
Statistics
Matches: 182, Mismatches: 31, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 182 1.00
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.38
Consensus pattern (42 bp):
TTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
Found at i:31081293 original size:126 final size:126
Alignment explanation
Indices: 31081065--31081319 Score: 377
Period size: 126 Copynumber: 2.0 Consensus size: 126
31081055 AAGGAGAACA
* * * *
31081065 TTCATTGCATTTAGAGGCCTAGGTGTGGAGGTCCATTTACTTTTCATTGCATTTAGAGGCCCAAA
1 TTCATTGCATTTAGAGGCCCAGGTATGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAAA
* *
31081130 TGTGGAGGTTCATTTACTTTTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
66 TGTAGAGGTTCATTGACTTTTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
* * * *
31081191 TTCATTGTATTTAGAGGCCCAGGTATTGAGGTCCATTCACTTTTCATTGCATTTAGAGACCTAAG
1 TTCATTGCATTTAGAGGCCCAGGTATGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAAA
* * *
31081256 TGTAGAGG-TCTATTGACTTTTCATTGCATTTAGAGACCCAGGTGTGGAGGTCCATTTACTT
66 TGTAGAGGTTC-ATTGACTTTTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
31081317 TTC
1 TTC
31081320 TAGTTTACTT
Statistics
Matches: 115, Mismatches: 13, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
125 2 0.02
126 113 0.98
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.38
Consensus pattern (126 bp):
TTCATTGCATTTAGAGGCCCAGGTATGGAGGTCCATTCACTTTTCATTGCATTTAGAGACCCAAA
TGTAGAGGTTCATTGACTTTTCATTGCATTTAAAGACCCAGCTGTGGAGATCCATTTACTT
Found at i:31082381 original size:151 final size:149
Alignment explanation
Indices: 31082088--31082508 Score: 606
Period size: 151 Copynumber: 2.8 Consensus size: 149
31082078 AAAATTTTGA
* *
31082088 TTTTTTTAATAAGAGAAAGTTTAGATTTT-AACAAAT-AAAAATATTTTTTTTAGTTATTTTAAA
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTGAA-AAATAAAAAATATTTTTTTTAGTAATTTTAAA
* *
31082151 GGAAAGTTCAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAAGTAAAAGCTTTA
65 GGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTA
*
31082216 ATCTTTAGGAAAAATAGT-T
130 ATCTTTAAGAAAAATAGTGT
* *
31082235 TTTTTTTAAAAAAGGAGAAAGTTTAGTTTTTGAAAAATAAAAAAT-TTGTTTTTTAGTCATTTTA
1 TTTTTTT-AAAAA-GAGAAAGTTTAGATTTTGAAAAATAAAAAATATT-TTTTTTAGTAATTTTA
** *
31082299 AAGGAAAGTTTAAAATTTTAAAACAATTTTTTTTATTTTTTTTCAACTATTTCAAAATAAAAGCT
63 AAGGAAAGTTTAAAATTTTAAAACAA-AATTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCT
31082364 TTAATCTTTAAGAAAAATAGTGT
127 TTAATCTTTAAGAAAAATAGTGT
*
31082387 TTTTTTT-AAAAGAGAAAGTTTAGATTTTGGAAAAT-AAAAATATGTTTTTTTAAGTAATTTTAA
1 TTTTTTTAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAAATAT-TTTTTTT-AGTAATTTT-A
*
31082450 AAGGAAAGTTTAAAATTTTAAAACAAAATTTTGA-TTTTTTT-AACTATTTCGAAATAAAA
63 AAGGAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAAATAAAA
31082509 TTTTGATTTT
Statistics
Matches: 247, Mismatches: 16, Indels: 21
0.87 0.06 0.07
Matches are distributed among these distances:
147 7 0.03
148 27 0.11
149 58 0.23
150 66 0.27
151 81 0.33
152 8 0.03
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (149 bp):
TTTTTTTAAAAAGAGAAAGTTTAGATTTTGAAAAATAAAAAATATTTTTTTTAGTAATTTTAAAG
GAAAGTTTAAAATTTTAAAACAAAATTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAA
TCTTTAAGAAAAATAGTGT
Found at i:31082488 original size:53 final size:53
Alignment explanation
Indices: 31082390--31082492 Score: 129
Period size: 53 Copynumber: 1.9 Consensus size: 53
31082380 ATAGTGTTTT
* *
31082390 TTTTAAAAGAGAAAGTTTAGATTTTGGAAAATAAAAATATGTTTTTTTAAGTAA
1 TTTTAAAAGAGAAAGTTTAAATTTT-GAAAACAAAAATATGTTTTTTTAAGTAA
* *
31082444 TTTTAAAAG-GAAAGTTTAAAATTTT-AAAACAAAATTTTGATTTTTTTAA
1 TTTTAAAAGAGAAAGTTT-AAATTTTGAAAACAAAAATATG-TTTTTTTAA
31082493 CTATTTCGAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
52 11 0.26
53 17 0.40
54 15 0.35
ACGTcount: A:0.45, C:0.01, G:0.12, T:0.43
Consensus pattern (53 bp):
TTTTAAAAGAGAAAGTTTAAATTTTGAAAACAAAAATATGTTTTTTTAAGTAA
Found at i:31082510 original size:31 final size:33
Alignment explanation
Indices: 31082464--31082541 Score: 115
Period size: 31 Copynumber: 2.4 Consensus size: 33
31082454 AAAGTTTAAA
* *
31082464 ATTTTAAAACAAAATTTTGA-TTTTTTT-AACT
1 ATTTCAAAATAAAATTTTGATTTTTTTTCAACT
*
31082495 ATTTCGAAATAAAATTTTGATTTTTTTTCAACT
1 ATTTCAAAATAAAATTTTGATTTTTTTTCAACT
31082528 ATTTCAAAATAAAA
1 ATTTCAAAATAAAA
31082542 GCTTTAATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
31 17 0.41
32 7 0.17
33 17 0.41
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (33 bp):
ATTTCAAAATAAAATTTTGATTTTTTTTCAACT
Found at i:31082654 original size:178 final size:180
Alignment explanation
Indices: 31082328--31082697 Score: 681
Period size: 178 Copynumber: 2.1 Consensus size: 180
31082318 AAAACAATTT
*
31082328 TTTTTATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGTGTTTTTTT
1 TTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAG-GTTTTTTT
* *
31082393 TAAAAGAGAAAGTTTAGATTTTGGAAAATAAAAATATGTTTTTTTAAGTAATTTTAAAAGGAAAG
65 TAAAAGAGAAAGTTTAGATTTAGAAAAATAAAAATATGTTTTTTTAAGTAATTTTAAAAGGAAAG
*
31082458 TTTAAAATTTTAAAACAAAATTTTGATTTTTTTAACTATTTCGAAATAAAA
130 TTTAAAATTATAAAACAAAATTTTGATTTTTTTAACTATTTCGAAATAAAA
31082509 TTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATA-GTTTTTTTT
1 TTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGGTTTTTTTT
31082573 AAAAGAGAAAGTTTAGATTTAGAAAAATAAAAATAT-TTTTTTTAAGTAATTTTAAAAGGAAAGT
66 AAAAGAGAAAGTTTAGATTTAGAAAAATAAAAATATGTTTTTTTAAGTAATTTTAAAAGGAAAGT
31082637 TTAAAATTATAAAACAAAATTTTGATTTTTTTAACTATTTCGAAATAAAA
131 TTAAAATTATAAAACAAAATTTTGATTTTTTTAACTATTTCGAAATAAAA
31082687 TTTTGATTTTT
1 TTTTGATTTTT
31082698 AAGAAAATTA
Statistics
Matches: 185, Mismatches: 4, Indels: 3
0.96 0.02 0.02
Matches are distributed among these distances:
178 88 0.48
179 43 0.23
181 54 0.29
ACGTcount: A:0.42, C:0.04, G:0.09, T:0.45
Consensus pattern (180 bp):
TTTTGATTTTTTTTCAACTATTTCAAAATAAAAGCTTTAATCTTTAAGAAAAATAGGTTTTTTTT
AAAAGAGAAAGTTTAGATTTAGAAAAATAAAAATATGTTTTTTTAAGTAATTTTAAAAGGAAAGT
TTAAAATTATAAAACAAAATTTTGATTTTTTTAACTATTTCGAAATAAAA
Found at i:31083273 original size:10 final size:10
Alignment explanation
Indices: 31083258--31083294 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
31083248 CACACTAGTA
31083258 TTATTTTTAT
1 TTATTTTTAT
31083268 TTATTTTTAT
1 TTATTTTTAT
31083278 TTCA-TTTTAT
1 TT-ATTTTTAT
31083288 TTATTTT
1 TTATTTT
31083295 CATGTCTATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
9 1 0.04
10 23 0.92
11 1 0.04
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (10 bp):
TTATTTTTAT
Found at i:31083306 original size:20 final size:20
Alignment explanation
Indices: 31083262--31083314 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 20
31083252 CTAGTATTAT
* *
31083262 TTTTATTTATTTTTATTTCA
1 TTTTATTTATTTTCATGTCA
31083282 TTTTATTTATTTTCATGTC-
1 TTTTATTTATTTTCATGTCA
*
31083301 TATTTATATATTTT
1 T-TTTATTTATTTT
31083315 TTTACGCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 1 0.03
20 28 0.97
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.72
Consensus pattern (20 bp):
TTTTATTTATTTTCATGTCA
Found at i:31083963 original size:40 final size:39
Alignment explanation
Indices: 31083836--31083963 Score: 139
Period size: 40 Copynumber: 3.2 Consensus size: 39
31083826 AAGAAACACT
** * * **
31083836 CGCAAAAATTGAGCATTAGCAGCGTTTTTTTAAAAACGC
1 CGCAAAAAAGGAGCATTAGCGGCGATTTTAAAAAAACGC
*
31083875 CGCTAAAAAAGGAGCATTAGCGGCGATTTTAAAAAAACGT
1 CGC-AAAAAAGGAGCATTAGCGGCGATTTTAAAAAAACGC
* * * *
31083915 CACTAAAAAGGAGCATTAGCGGTGCTTTTAAGAAAAACGC
1 CGCAAAAAAGGAGCATTAGCGGCGATTTTAA-AAAAACGC
31083955 CGCAAAAAA
1 CGCAAAAAA
31083964 CCAAAGCCCA
Statistics
Matches: 73, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
39 28 0.38
40 45 0.62
ACGTcount: A:0.41, C:0.17, G:0.20, T:0.21
Consensus pattern (39 bp):
CGCAAAAAAGGAGCATTAGCGGCGATTTTAAAAAAACGC
Found at i:31084073 original size:41 final size:39
Alignment explanation
Indices: 31084002--31084360 Score: 299
Period size: 41 Copynumber: 8.8 Consensus size: 39
31083992 CTTTTCGGGT
*** *
31084002 CTTTAGCGGCGATTTCAAAAAAGCGTCGCTAATGCTCAGGG
1 CTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAATGCT-AGGG
* * * *
31084043 CTATAGCGGCATTTTTGAAGAAGTGCCGCTAATGGTTAGGG
1 CTTTAGCGGCGTTTTTGAA-AAGCGCCGCTAAT-GCTAGGG
* * *
31084084 CTTTAACGGCGTTTTTAGAGAAGCGCCGCTAATGCTGGGG
1 CTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTAGGG
* *
31084124 CTTTAGCAGCGTTTTTTGAAAAGCGCCGCTAATGCTGTGGG
1 CTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAATGCT-AGGG
* *
31084165 CTTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATG-TTGTGG
1 CTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTAG-GG
* *
31084205 CCTTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATG-TTGTGG
1 -CTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTAG-GG
* * * **
31084246 CCTTTAGCGGCATTTTTGGTAAAGCACCGCTAATGCTTTGG
1 -CTTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTAGGG
* * *
31084287 CATTTAGAGGCGTTTTTGGATAAGCGCCGCTAATGCTGGGG
1 C-TTTAGCGGCGTTTTT-GAAAAGCGCCGCTAATGCTAGGG
* *
31084328 TCTTTAGTGGCGCTTTTTTAAAAGCGCCGCTAA
1 -CTTTAGCGGCG-TTTTTGAAAAGCGCCGCTAA
31084361 AAACATTTTA
Statistics
Matches: 272, Mismatches: 34, Indels: 24
0.82 0.10 0.07
Matches are distributed among these distances:
39 2 0.01
40 46 0.17
41 212 0.78
42 12 0.04
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (39 bp):
CTTTAGCGGCGTTTTTGAAAAGCGCCGCTAATGCTAGGG
Found at i:31084219 original size:122 final size:119
Alignment explanation
Indices: 31084020--31084360 Score: 355
Period size: 123 Copynumber: 2.8 Consensus size: 119
31084010 GCGATTTCAA
* * * * * *
31084020 AAAAGCGTCGCTAATGCTCAGGGCTATAGCGGCATTTTTGAAGAAGTGCCGCTAATGGTTAGGGC
1 AAAAGCGCCGCTAATGCT-TGGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAAT-GTT-GGGC
* * * *
31084085 TTTAACGGCGTTTTTAGAGAAGCGCCGCTAATGCTG-GGGCTTTAGCAGCGTTTTTTG
63 TTTAGCGGCGTTTTTAGA-AAGCGCCGCTAATGCTGTGGCCTTTAGCAGCATTTTTGG
31084142 AAAAGCGCCGCTAATGCTGTGGGCTTTAGCGGCGTTTTTGGTA-AAGCGCCGCTAATGTTGTGGC
1 AAAAGCGCCGCTAATGCT-TGGGCTTTAGCGGCGTTTTTGG-AGAAGCGCCGCTAATGTTG-GG-
* * *
31084206 CTTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGTTGTGGCCTTTAGCGGCATTTTTGG
62 CTTTAGCGGCGTTTTTAG-AAAGCGCCGCTAATGCTGTGGCCTTTAGCAGCATTTTTGG
* * * * * *
31084265 TAAAGCACCGCTAATGCTTTGGCATTTAGAGGCGTTTTTGGATAAGCGCCGCTAATGCTGGGGTC
1 AAAAGCGCCGCTAATGCTTGGGC-TTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATG-TTGGG-C
*
31084330 TTTAGTGGCGCTTTTTTA-AAAGCGCCGCTAA
63 TTTAGCGGCG--TTTTTAGAAAGCGCCGCTAA
31084361 AAACATTTTA
Statistics
Matches: 187, Mismatches: 22, Indels: 19
0.82 0.10 0.08
Matches are distributed among these distances:
120 1 0.01
121 5 0.03
122 84 0.45
123 90 0.48
124 2 0.01
125 5 0.03
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (119 bp):
AAAAGCGCCGCTAATGCTTGGGCTTTAGCGGCGTTTTTGGAGAAGCGCCGCTAATGTTGGGCTTT
AGCGGCGTTTTTAGAAAGCGCCGCTAATGCTGTGGCCTTTAGCAGCATTTTTGG
Found at i:31085315 original size:279 final size:267
Alignment explanation
Indices: 31084736--31085397 Score: 708
Period size: 279 Copynumber: 2.4 Consensus size: 267
31084726 GGTTAGGGGC
* * * * *
31084736 TAGGGGTTAGACCTTAAGTGTTAAGAGTTAGGGATTTAGAGTTTAGGGATTCAGGGGTTGAGTTA
1 TAGGGGTTAGACGTTAGGGGTTAAGA-ATA-TGATTTA-AGTTTAGGGATTCAGGGGTTGAGTTA
* *
31084801 GGGTTTTGGGTTTAGATTAATTAGTTTTTTAATTTATATTTTAACTATGTTCTTATATAATTATA
63 GGGTTTTAGGTTTAGATTAATTAGTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTATA
31084866 AAAGAGATAATAATAAATTTGTTTAGGGTTTTTGGTTTAAGGTATATGATTAATTTAAGATTTAA
128 AAAGAGATAATAATAAATTTGTTTA-------T-G--T--GGTATATGATTAATTTAAGATTTAA
** * * *
31084931 GACCGGTTTAAGAGTTACTATTTTAAAGTTTATGGGGTATGGATTTAAGGATTATGGTTTAAGGG
181 GACCAATTTAAGAGTTACTATTTTAAAGTTTATGGAGTATGAATTTAAGGATTATGGTTTAAAGG
*
31084996 TTGCGATTTAAAGGTTTGGGGT
246 TTGCGATTTAAAGGTTTAGGGT
* * *
31085018 TTGGGGTTTGATGTTAGGGGTTAAGAATATGATTTAAGTTTTAGGGATTCAGGGGTTGAGTTAGG
1 TAGGGGTTAGACGTTAGGGGTTAAGAATATGATTTAAG-TTTAGGGATTCAGGGGTTGAGTTAGG
* *
31085083 GTTTTAGGTTTAGATTATTTAG-TTTTTAATTTATATTTTAAATATTTTCTTATATAATTATAAA
65 GTTTTAGGTTTAGATTAATTAGTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTATAAA
* * * *
31085147 AGAGATAGTAATAAATTTGTTTA-G-GGTATATGATTAATTTAATATTTAAGGCCAATTTAGGAG
130 AGAGATAATAATAAATTTGTTTATGTGGTATATGATTAATTTAAGATTTAAGACCAATTTAAGAG
*
31085210 TTACTATTTTAAGGTTTATGGAGTATGAATTTAGGGATTAGGGATTAAAGATTACGGTTTAAAGG
195 TTACTATTTTAAAGTTTATGGAGTATGAATTT----A--A-GGATT----A-T--GGTTTAAAGG
31085275 TTG-GAATTT-AAGGTTTAAGGGT
246 TTGCG-ATTTAAAGGTTT-AGGGT
* * ** *
31085297 TAGGGGTTAGACGTTAGGGGTTAAGAATATGATTTAGGGTTTAAGGATTCA-GGGTCAAGTT-CG
1 TAGGGGTTAGACGTTAGGGGTTAAGAATATGATTTA-AGTTTAGGGATTCAGGGGTTGAGTTAGG
*
31085360 GTTTTAGGATTAGATTAATTAGTTTTTTTAATTTATAT
65 GTTTTAGGTTTAGATTAATTAG-TTTTTTAATTTATAT
31085398 GTATTGAATG
Statistics
Matches: 327, Mismatches: 33, Indels: 43
0.81 0.08 0.11
Matches are distributed among these distances:
265 63 0.19
269 1 0.00
270 1 0.00
271 1 0.00
272 5 0.02
276 1 0.00
277 22 0.07
278 16 0.05
279 142 0.43
280 53 0.16
281 2 0.01
282 20 0.06
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.43
Consensus pattern (267 bp):
TAGGGGTTAGACGTTAGGGGTTAAGAATATGATTTAAGTTTAGGGATTCAGGGGTTGAGTTAGGG
TTTTAGGTTTAGATTAATTAGTTTTTTAATTTATATTTTAAATATGTTCTTATATAATTATAAAA
GAGATAATAATAAATTTGTTTATGTGGTATATGATTAATTTAAGATTTAAGACCAATTTAAGAGT
TACTATTTTAAAGTTTATGGAGTATGAATTTAAGGATTATGGTTTAAAGGTTGCGATTTAAAGGT
TTAGGGT
Found at i:31085441 original size:18 final size:18
Alignment explanation
Indices: 31085407--31085441 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
31085397 TGTATTGAAT
*
31085407 GGTTAATTTAGGATTTAA
1 GGTTAATTAAGGATTTAA
*
31085425 GGTTAATTAAGGGTTTA
1 GGTTAATTAAGGATTTA
31085442 GTACTTGGGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.26, T:0.43
Consensus pattern (18 bp):
GGTTAATTAAGGATTTAA
Done.