Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3224
Parameters: 2 7 7 80 10 50 1000
Length:  40255

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14--133
22
5.3
23
90
7
185
29
20
21
28
1.98
13--142
45
2.9
46
88
7
189
29
21
21
27
1.99
7877--7933
9
5.9
9
73
15
51
35
8
21
35
1.84
7875--7937
20
3.2
20
95
0
117
36
12
19
31
1.89
7991--8157
23
7.0
24
85
8
216
28
19
21
30
1.97
7992--8136
47
3.1
46
88
6
211
28
18
20
31
1.97
8350--8413
31
2.1
31
90
0
101
35
17
23
23
1.95
9808--9935
55
2.3
57
84
6
179
32
24
14
28
1.94
18960--19071
27
4.2
26
82
7
125
37
23
23
16
1.93
20490--20536
24
2.0
24
91
0
76
23
38
2
36
1.67
23714--23780
20
3.3
20
97
0
125
35
8
20
34
1.84
23716--23772
9
5.9
9
76
15
60
35
5
22
36
1.77
23714--23794
40
2.0
39
86
9
110
35
9
19
34
1.85
23828--23911
26
3.4
25
85
8
109
27
21
22
28
1.99
24124--24209
38
2.6
31
76
23
102
33
17
20
27
1.95
27887--28107
40
5.6
40
89
3
322
28
27
22
22
1.99
36192--36368
40
4.5
41
84
8
210
28
25
22
22
1.99
39836--40002
78
2.2
77
89
3
246
25
28
21
25
1.99
39836--40055
40
5.7
38
85
7
239
25
28
21
25
1.99
39836--40055
38
5.7
38
84
7
239
25
28
21
25
1.99
39836--40055
117
1.9
115
80
10
259
25
28
21
25
1.99

Tables:   1

The End!