Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold327
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41712
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Found at i:115 original size:27 final size:27
Alignment explanation
Indices: 62--113 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
52 ACCAATGAAC
*
62 CGGGGAATCAGCAACTTAGCAACCCCT
1 CGGGGAATCAGCAACATAGCAACCCCT
*
89 CGGGGGATCAGC-ACATAGCAACCCC
1 CGGGGAATCAGCAACATAGCAACCCC
114 CTTTCACATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 12 0.52
27 11 0.48
ACGTcount: A:0.29, C:0.35, G:0.25, T:0.12
Consensus pattern (27 bp):
CGGGGAATCAGCAACATAGCAACCCCT
Found at i:7521 original size:71 final size:71
Alignment explanation
Indices: 7399--7549 Score: 250
Period size: 71 Copynumber: 2.1 Consensus size: 71
7389 AGGGAATCAT
*
7399 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAATATACAATGG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATACAATGG
7464 ATATCG
66 ATATCG
***
7470 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCC-TTTCAATTTCAAAGATATGGTG
1 CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTC-ATTTCAAAGATACAATG
7534 GATATCG
65 GATATCG
7541 CACTTAGCA
1 CACTTAGCA
7550 CCACCAATGA
Statistics
Matches: 75, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
70 4 0.05
71 71 0.95
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.23
Consensus pattern (71 bp):
CACTTAGCAACCCCTCGGGGGAATCAGCACATAGCAACCCCCTTTTCATTTCAAAGATACAATGG
ATATCG
Found at i:8966 original size:30 final size:30
Alignment explanation
Indices: 8881--8977 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
8871 TAAACTAAAA
* * *
8881 TGAGCTAAGCTTTAGTTCGTGAGCTAAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
* * * * * * *
8911 TGAGTTGAGGCTAAACTCCTAAGCTGAAGT
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
8941 TGAGCTAAGGTTTAGCTCGTGAGCTGAA-T
1 TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
8970 ATGAGCTA
1 -TGAGCTA
8978 GGAGTGAGCT
Statistics
Matches: 49, Mismatches: 17, Indels: 2
0.72 0.25 0.03
Matches are distributed among these distances:
29 1 0.02
30 48 0.98
ACGTcount: A:0.28, C:0.14, G:0.28, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGGTTTAGCTCGTGAGCTGAAGT
Found at i:9211 original size:27 final size:27
Alignment explanation
Indices: 9146--9213 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
9136 CTCGTATCAG
** *
9146 GGTAAAATGACAAAAATACCCATATAG
1 GGTAAAATGACTGAAATACCCATATAA
* * *
9173 GGTAAAATGACTGTAATACCCCTGTAA
1 GGTAAAATGACTGAAATACCCATATAA
9200 GGTAAAATGACTGA
1 GGTAAAATGACTGA
9214 TTTGCTCTAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.44, C:0.15, G:0.19, T:0.22
Consensus pattern (27 bp):
GGTAAAATGACTGAAATACCCATATAA
Found at i:9664 original size:34 final size:32
Alignment explanation
Indices: 9618--9704 Score: 93
Period size: 34 Copynumber: 2.6 Consensus size: 32
9608 CTGATTACTA
* * *
9618 TTACTGAAATGGGCTAAGGCCTAGATTGCCACTG
1 TTACTG-AATGGGCTAAGGCC-ACACTGACACTG
* * *
9652 TTACTGATATGGGCTTAGGCCCCACTGATACTG
1 TTACTGA-ATGGGCTAAGGCCACACTGACACTG
9685 TTACTGAATGGGCTAAGGCC
1 TTACTGAATGGGCTAAGGCC
9705 CTAACTGAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 4
0.80 0.12 0.07
Matches are distributed among these distances:
32 12 0.27
33 15 0.33
34 18 0.40
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.28
Consensus pattern (32 bp):
TTACTGAATGGGCTAAGGCCACACTGACACTG
Found at i:9712 original size:33 final size:33
Alignment explanation
Indices: 9607--9717 Score: 109
Period size: 33 Copynumber: 3.3 Consensus size: 33
9597 TGGTTACTGC
*
9607 ACTGATTACTATTACTGAAATGGGCTAAGG-CCTA
1 ACTGA-TACTGTTACTG-AATGGGCTAAGGCCCTA
* ** * *
9641 GATTGCCACTGTTACTGATATGGGCTTAGGCCC-C
1 -ACTGATACTGTTACTGA-ATGGGCTAAGGCCCTA
9675 ACTGATACTGTTACTGAATGGGCTAAGGCCCTA
1 ACTGATACTGTTACTGAATGGGCTAAGGCCCTA
*
9708 ACTGAAACTG
1 ACTGATACTG
9718 AAAGGGCTTA
Statistics
Matches: 61, Mismatches: 12, Indels: 8
0.75 0.15 0.10
Matches are distributed among these distances:
32 13 0.21
33 24 0.39
34 19 0.31
35 5 0.08
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (33 bp):
ACTGATACTGTTACTGAATGGGCTAAGGCCCTA
Found at i:13329 original size:27 final size:27
Alignment explanation
Indices: 13292--13390 Score: 130
Period size: 27 Copynumber: 3.7 Consensus size: 27
13282 CAAATTAATT
*
13292 AAATGATTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
13319 AAATGACTATTTTGCCCTTATATGGTA
1 AAATGACTATTTTGCCCTTATATGGTA
*
13346 AAATGA-TAGTTTTGCCCTTTTGA-GGTA
1 AAATGACTA-TTTTGCCCTTAT-ATGGTA
* *
13373 AAATAACTGTTTTGCCCT
1 AAATGACTATTTTGCCCT
13391 ATGTGATGTA
Statistics
Matches: 65, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
26 2 0.03
27 61 0.94
28 2 0.03
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.41
Consensus pattern (27 bp):
AAATGACTATTTTGCCCTTATATGGTA
Found at i:13734 original size:18 final size:18
Alignment explanation
Indices: 13711--13754 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
13701 ACTTGTATTC
13711 TGTTACTGCACTGA-TTAT
1 TGTTACTGCACT-ATTTAT
*
13729 TGTTACTGCACTATTTTT
1 TGTTACTGCACTATTTAT
13747 TGTTACTG
1 TGTTACTG
13755 TATTGGGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.18, C:0.16, G:0.16, T:0.50
Consensus pattern (18 bp):
TGTTACTGCACTATTTAT
Found at i:14789 original size:37 final size:37
Alignment explanation
Indices: 14730--14801 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
14720 AGCTCAGACG
*
14730 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
*
14767 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGAAGTCATCGGGTCTTACCCGGA
14802 ATATATTTCC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
AAATCTCCACACGAAGTCATCGGGTCTTACCCGGACA
Found at i:15073 original size:48 final size:48
Alignment explanation
Indices: 14950--15131 Score: 267
Period size: 48 Copynumber: 3.8 Consensus size: 48
14940 CATCGCCTAT
* * *
14950 ATATTTCACACTACCCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATAC
* *
15000 ATATTTCACATT-GACCATTCAGCTTTACCACATATGCATATCTCATAC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATAC
*
15048 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTCATAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
*
15096 ATATTTCACATTAGCCATTCGGCTTTACCATATATA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATA
15132 TGCATGTTCA
Statistics
Matches: 121, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
48 81 0.67
49 1 0.01
50 39 0.32
ACGTcount: A:0.31, C:0.26, G:0.06, T:0.37
Consensus pattern (48 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATAC
Found at i:15136 original size:98 final size:97
Alignment explanation
Indices: 14950--15130 Score: 276
Period size: 98 Copynumber: 1.9 Consensus size: 97
14940 CATCGCCTAT
*
14950 ATATTTCACACTACCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTGAC
1 ATATTTCACACTACCCATTCGGCTTTACCACATATACATATCTCA-ATACATATTTCACATTGAC
15015 CATTCAGCTTTACCACATATGCATATCTCATAC
65 CATTCAGCTTTACCACATATGCATATCTCATAC
* * *
15048 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATTTCTC-ATACATATTTCACATT-AGC
1 ATATTTCACACTACCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTGA-C
* *
15111 CATTCGGCTTTACCATATAT
65 CATTCAGCTTTACCACATAT
15131 ATGCATGTTC
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
95 1 0.01
96 34 0.45
98 41 0.54
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (97 bp):
ATATTTCACACTACCCATTCGGCTTTACCACATATACATATCTCAATACATATTTCACATTGACC
ATTCAGCTTTACCACATATGCATATCTCATAC
Found at i:15180 original size:47 final size:47
Alignment explanation
Indices: 15101--15341 Score: 374
Period size: 47 Copynumber: 5.1 Consensus size: 47
15091 CATACATATT
* * * * *
15101 TCACATTAGCCATTCGGCTTTACCATATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
15148 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
15195 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
15242 TCACATTGGCCATTCGGCCTTATCACATAAATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* **
15289 TCACATTGGCCATTCGGCCTTATCTCATATATGCACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
15336 TCACAT
1 TCACAT
15342 AAAATCCTAA
Statistics
Matches: 178, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 178 1.00
ACGTcount: A:0.27, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:15221 original size:22 final size:22
Alignment explanation
Indices: 15194--15269 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
15184 GCTCACATTC
15194 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
15216 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
15240 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
15263 ATCACAT
1 ATCACAT
15270 AAATGCATGT
Statistics
Matches: 41, Mismatches: 6, Indels: 14
0.67 0.10 0.23
Matches are distributed among these distances:
22 17 0.41
23 7 0.17
24 7 0.17
25 10 0.24
ACGTcount: A:0.25, C:0.29, G:0.13, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:15342 original size:25 final size:25
Alignment explanation
Indices: 15216--15342 Score: 72
Period size: 25 Copynumber: 5.3 Consensus size: 25
15206 ATTCGGCCTT
**
15216 ATCACATATATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
15241 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
* **
15263 ATCACATAAATGCATGTTCACATTC
1 ATCACATATATGCACATTCACATTC
* * *
15288 ATCACAT-T-GGC-CATTCGGCCTT-
1 ATCACATATATGCACATTC-ACATTC
*
15310 ATCTCATATATGCACATTCACATTC
1 ATCACATATATGCACATTCACATTC
15335 ATCACATA
1 ATCACATA
15343 AAATCCTAAA
Statistics
Matches: 70, Mismatches: 22, Indels: 20
0.62 0.20 0.18
Matches are distributed among these distances:
22 19 0.27
23 11 0.16
24 11 0.16
25 29 0.41
ACGTcount: A:0.29, C:0.28, G:0.10, T:0.33
Consensus pattern (25 bp):
ATCACATATATGCACATTCACATTC
Found at i:25914 original size:93 final size:93
Alignment explanation
Indices: 25802--25975 Score: 303
Period size: 93 Copynumber: 1.9 Consensus size: 93
25792 GCCCATAAGT
* *
25802 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
25867 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
* *
25895 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTTAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
25960 CGAGTTCGGATGCCTA
66 CGAGCTCGGATGCCTA
25976 AATATCCTAG
Statistics
Matches: 76, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:25969 original size:46 final size:46
Alignment explanation
Indices: 25794--25969 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
25784 TGTAACCCGC
* *
25794 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
25840 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
25886 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
25933 CCATAAGTGAACTCGGACTCAACTTAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
25970 TGCCTAAATA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 69 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:28377 original size:15 final size:15
Alignment explanation
Indices: 28348--28397 Score: 66
Period size: 15 Copynumber: 3.4 Consensus size: 15
28338 CAAAGATAAC
*
28348 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
28362 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
28377 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
28392 AAGAAA
1 AAGAAA
28398 CCCAAGATAC
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
14 8 0.26
15 23 0.74
ACGTcount: A:0.60, C:0.12, G:0.18, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:28406 original size:15 final size:15
Alignment explanation
Indices: 28359--28406 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
28349 AGAAAACCGA
28359 ATAAAGAAATCC-AG
1 ATAAAGAAATCCAAG
* *
28373 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
28389 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
28404 ATA
1 ATA
28407 CGATACTATG
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
15 26 0.96
16 1 0.04
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:31469 original size:93 final size:93
Alignment explanation
Indices: 31310--31481 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
31300 GCCCATAAGT
* *
31310 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
31375 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
31403 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
31468 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
31482 AAATATCCTA
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:31477 original size:46 final size:46
Alignment explanation
Indices: 31302--31477 Score: 214
Period size: 46 Copynumber: 3.8 Consensus size: 46
31292 TGTAACCCGC
* *
31302 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
31348 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
31394 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
31441 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
31478 TGCCAAATAT
Statistics
Matches: 111, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.63
47 32 0.29
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:35579 original size:45 final size:46
Alignment explanation
Indices: 35465--35589 Score: 198
Period size: 46 Copynumber: 2.7 Consensus size: 46
35455 TGGTTGAGCA
* *
35465 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
* *
35511 TCCGAACTCGTTGAGTTGAGTCCGAGTTCATTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
35557 -CCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
35590 GGGCGGGTTA
Statistics
Matches: 73, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
45 31 0.42
46 42 0.58
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:35848 original size:19 final size:20
Alignment explanation
Indices: 35811--35848 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
35801 ATAAGGTGGT
35811 AAGATGATGAATGATGTTTA
1 AAGATGATGAATGATGTTTA
35831 AAGATG-TGATAT-ATGTTT
1 AAGATGATGA-ATGATGTTT
35849 TGGTGGTACC
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (20 bp):
AAGATGATGAATGATGTTTA
Done.