Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3238
Parameters: 2 7 7 80 10 50 1000
Length:  34032

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
285--404
56
2.1
56
98
0
231
45
9
23
22
1.81
1532--1709
40
4.6
40
80
10
199
24
22
28
25
2.00
1532--1709
38
4.6
38
78
12
150
24
22
28
25
2.00
7480--7599
56
2.1
56
98
0
231
45
9
23
22
1.81
8726--8910
40
4.6
39
83
5
196
24
22
27
24
2.00
8726--8910
79
2.3
81
84
7
227
24
22
27
24
2.00
8779--8943
79
2.1
79
84
6
210
26
21
27
24
1.99
14511--14568
25
2.3
25
84
0
80
36
20
22
20
1.95
16605--16738
27
5.0
27
88
0
189
34
16
22
26
1.95
17333--17418
6
14.0
6
76
13
77
20
19
12
46
1.83
17336--17400
25
2.6
25
90
0
94
20
21
13
44
1.86
17355--17451
43
2.3
43
87
3
133
22
19
11
46
1.82
19376--19480
27
3.9
26
75
10
86
40
23
3
32
1.73
19471--19605
27
5.0
27
82
0
155
36
17
20
25
1.94
20225--20330
6
17.3
6
68
21
60
19
19
13
47
1.82
20225--20285
24
2.5
25
83
5
79
19
21
11
47
1.81
20241--20321
37
2.2
36
88
2
117
19
20
12
46
1.82
22255--22359
27
3.9
27
73
0
93
38
24
6
30
1.81
22351--22482
27
4.9
27
87
4
178
34
17
21
27
1.95
22351--22482
53
2.5
54
86
5
187
34
17
21
27
1.95
22625--22655
16
1.9
16
93
0
53
29
19
16
35
1.93
24298--24481
79
2.3
80
82
8
216
25
22
27
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24299--24481
40
4.6
39
80
8
201
25
22
27
24
2.00
24350--24514
79
2.1
79
83
6
201
26
21
27
24
1.99
32326--32453
39
3.2
39
80
7
143
25
21
27
25
1.99
33973--34031
21
2.9
21
84
2
84
10
16
32
40
1.82

Tables:   1

The End!