Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold759

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 21752
ACGTcount: A:0.30, C:0.17, G:0.18, T:0.35


Found at i:6322 original size:36 final size:36

Alignment explanation


    Indices: 6275--6346  Score: 135
    Period size: 36  Copynumber: 2.0  Consensus size: 36

       6265 TTGGTATGTA

                                        *       
       6275 AACCAAAACTATTTTCAAAGCCTCGGTCTTTAACTC
          1 AACCAAAACTATTTTCAAAGCCTCGGTCATTAACTC

                                                
       6311 AACCAAAACTATTTTCAAAGCCTCGGTCATTAACTC
          1 AACCAAAACTATTTTCAAAGCCTCGGTCATTAACTC

       6347 CCCCATTAGC


Statistics
Matches: 35,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  36   35  1.00

ACGTcount: A:0.35, C:0.28, G:0.08, T:0.29


Consensus pattern (36 bp):   
AACCAAAACTATTTTCAAAGCCTCGGTCATTAACTC

Found at i:8614 original size:19 final size:19

Alignment explanation


    Indices: 8565--8615  Score: 57
    Period size: 19  Copynumber: 2.7  Consensus size: 19

       8555 ATATTAATTA

                             * 
       8565 AATAAAAAATTTAAAAATT
          1 AATAAAAAATTTAAAAAAT

                 ***           
       8584 AATAAGTTATTTAAAAAAT
          1 AATAAAAAATTTAAAAAAT

             *           
       8603 ATTAAAAAATTTA
          1 AATAAAAAATTTA

       8616 CAAACCTATT


Statistics
Matches: 24,  Mismatches: 8, Indels: 0
        0.75            0.25        0.00

Matches are distributed among these distances:
  19   24  1.00

ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35


Consensus pattern (19 bp):   
AATAAAAAATTTAAAAAAT
Done.