Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold1019
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 24396
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Found at i:600 original size:1 final size:1
Alignment explanation
Indices: 594--633 Score: 71
Period size: 1 Copynumber: 40.0 Consensus size: 1
584 AGAAGATGAT
*
594 GGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
634 AGGGAGTGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.03, C:0.00, G:0.97, T:0.00
Consensus pattern (1 bp):
G
Found at i:3625 original size:40 final size:40
Alignment explanation
Indices: 3542--3804 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
3532 TTGAATGCTG
* * * * * *
3542 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
3582 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
3622 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
3662 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
3702 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
3742 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
3781 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
3805 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:3824 original size:79 final size:80
Alignment explanation
Indices: 3581--3839 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
3571 AAGTGAATAT
* * * * * * *
3581 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
3645 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
3661 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
3726 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
3741 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
3805 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
3820 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
3840 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:10308 original size:40 final size:40
Alignment explanation
Indices: 10225--10487 Score: 316
Period size: 40 Copynumber: 6.6 Consensus size: 40
10215 TTGAATGCTG
* * * * * *
10225 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
10265 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
10305 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
10345 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* *
10385 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
10425 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
10464 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
10488 TGAACGAGGA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 156 0.78
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:10507 original size:79 final size:80
Alignment explanation
Indices: 10264--10522 Score: 238
Period size: 80 Copynumber: 3.3 Consensus size: 80
10254 AAGTGAATAT
* * * * * * *
10264 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAG
** * *
10328 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
10344 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCAGT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
** ** *
10409 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * * *
10424 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
* *
10488 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
10503 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
10523 TACGTGATTT
Statistics
Matches: 154, Mismatches: 23, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
78 14 0.09
79 47 0.31
80 93 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAGT
CGAACGAGGAGCTAA
Found at i:12218 original size:90 final size:90
Alignment explanation
Indices: 12065--12244 Score: 333
Period size: 90 Copynumber: 2.0 Consensus size: 90
12055 AATGAGAAAG
* *
12065 CTTTGTGAATTTGAATGAGATTAGCCTTGTTAAGCATACTTGGAATGATATGTAAATGTTCATGT
1 CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGAATGATATGTAAATGTTCATGT
12130 GATGACTTTATTTGTATATGGCTTA
66 GATGACTTTATTTGTATATGGCTTA
*
12155 CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGATTGATATGTAAATGTTCATGT
1 CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGAATGATATGTAAATGTTCATGT
12220 GATGACTTTATTTGTATATGGCTTA
66 GATGACTTTATTTGTATATGGCTTA
12245 AAGCTTACTT
Statistics
Matches: 87, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
90 87 1.00
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.43
Consensus pattern (90 bp):
CTTTGTGAATTTGAATGAGATTAACATTGTTAAGCATACTTGGAATGATATGTAAATGTTCATGT
GATGACTTTATTTGTATATGGCTTA
Found at i:15525 original size:44 final size:44
Alignment explanation
Indices: 15460--15543 Score: 116
Period size: 44 Copynumber: 1.9 Consensus size: 44
15450 TTGATATCTC
* *
15460 AAAGTCCATGGTTGTACCATGGCAATTAAGGAAGAATTGAGAAA
1 AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGAGAAA
* *
15504 AAAGTCCAT-GTTCATAACATGGCATTTAAGGAGGAATTGA
1 AAAGTCCATGGTT-ATAACATGGCAATTAAGGAAGAATTGA
15544 CGGTTAAGGA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 3 0.09
44 32 0.91
ACGTcount: A:0.39, C:0.12, G:0.24, T:0.25
Consensus pattern (44 bp):
AAAGTCCATGGTTATAACATGGCAATTAAGGAAGAATTGAGAAA
Found at i:15861 original size:55 final size:54
Alignment explanation
Indices: 15735--16147 Score: 496
Period size: 55 Copynumber: 7.6 Consensus size: 54
15725 TTGGTAAGAT
** * * *
15735 AAGGATATTATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* * ** *
15789 AAGGAAATCATGTAAGACCATGTGAAGACATGGCACTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * * *
15844 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TCCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
15897 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
15952 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
16005 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGC
* * *
16060 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
* *
16113 AAGGATACCACGTAAGACCATGTCAAGACATGGCA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCA
16148 ATGGTAAGTT
Statistics
Matches: 306, Mismatches: 42, Indels: 23
0.82 0.11 0.06
Matches are distributed among these distances:
52 12 0.04
53 116 0.38
54 43 0.14
55 123 0.40
56 12 0.04
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGC
Found at i:15925 original size:108 final size:108
Alignment explanation
Indices: 15744--16147 Score: 700
Period size: 108 Copynumber: 3.7 Consensus size: 108
15734 TAAGGATATT
* * * * *
15744 ATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGCAAGGAAATCATGTAAGACCA
1 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGCAAGGATACCATGTAAGACCA
* *
15809 TGTGAAGACATGGCACTGATGAGTTACTATAAGGCAAAGGTCCC
65 TGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCC
*
15853 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGCAAGGATACCATGTAAGACCAT
1 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCAT
*
15918 GTCAAGACATGGAATTGATGAGTTACTATAAGGCAAAGGTCCC
66 GTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCC
15961 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCAT
1 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCAT
*
16026 GTCAAGACATGGCATTGATAAGTTACTATAAGGCAAAGGTCCC
66 GTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCC
*
16069 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCACGTAAGACCAT
1 ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCAT
16134 GTCAAGACATGGCA
66 GTCAAGACATGGCA
16148 ATGGTAAGTT
Statistics
Matches: 282, Mismatches: 13, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
108 250 0.89
109 32 0.11
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (108 bp):
ATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGATACCATGTAAGACCAT
GTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCCC
Found at i:16158 original size:53 final size:53
Alignment explanation
Indices: 15735--16162 Score: 484
Period size: 53 Copynumber: 7.9 Consensus size: 53
15725 TTGGTAAGAT
** * * *
15735 AAGGATATTATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTTTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAG-TTCATAAGGC
* * ** *
15789 AAGGAAATCATGTAAGACCATGTGAAGACATGGCACTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-ATAAGGC
* * * *
15844 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTCCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
* *
15897 AAGGATACCATGTAAGACCATGTCAAGACATGGAATTGATGAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-ATAAGGC
* * *
15952 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
* *
16005 AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-ATAAGGC
* * *
16060 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
* * * * *
16113 AAGGATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCATAA
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAA
16163 AAGAAAAGGT
Statistics
Matches: 318, Mismatches: 44, Indels: 25
0.82 0.11 0.06
Matches are distributed among these distances:
52 12 0.04
53 131 0.41
54 41 0.13
55 122 0.38
56 12 0.04
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.22
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAGGC
Found at i:20315 original size:40 final size:40
Alignment explanation
Indices: 20231--20413 Score: 187
Period size: 40 Copynumber: 4.6 Consensus size: 40
20221 TTGAATGCTG
* * * *
20231 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
20270 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
20311 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATA-CAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
20350 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
20390 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
20414 GAATGAGTTA
Statistics
Matches: 121, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
39 35 0.29
40 76 0.63
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:20382 original size:79 final size:81
Alignment explanation
Indices: 20231--20410 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 81
20221 TTGAATGCTG
* * * *
20231 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
* *
20295 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
20311 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACAAT-TCCGGGTTAAG-TCCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACAATATCCGGACTAAGAT-CCGAAGGCA
20372 TTCGTGCGAGTTTTAAAA
64 TTCGTGCGAGTTTTAAAA
20390 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
20411 ATTGAATGAG
Statistics
Matches: 88, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
78 3 0.03
79 51 0.58
80 25 0.28
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:20434 original size:39 final size:39
Alignment explanation
Indices: 20311--20460 Score: 117
Period size: 39 Copynumber: 3.8 Consensus size: 39
20301 AGTTATTAAT
* ** * *
20311 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAG--ATACAAT
1 TCCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTCTA-AAA
** *
20350 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTCTAAAA
* **
20390 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATGA
1 TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTT-CTAAAA
* *
20430 -CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 TCCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
20461 GAGCTATATC
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
38 3 0.03
39 52 0.55
40 37 0.39
41 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.25
Consensus pattern (39 bp):
TCCGGGTTAAGTCCCGAAGGCATTGAACGAGTTCTAAAA
Found at i:20434 original size:79 final size:79
Alignment explanation
Indices: 20284--20450 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
20274 GGACTAAGAT
* * * * **
20284 CCGAAGGTATTTGTGCGAGTTATTAATTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACAA
1 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
* *
20349 TTCCGGGTTAAGTC
66 TACCGGGCTAAGTC
* * *
20363 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTCCCGAAGG-CATTGAATGAGTTACT
1 CCGAAGGCATTCGTGCGAGTTATT-AAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACA
*
20426 ATGACCGGGCTATGTC
65 AT-ACCGGGCTAAGTC
20442 CCGAAGGCA
1 CCGAAGGCA
20451 CTTGAACGAG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
78 14 0.19
79 60 0.81
ACGTcount: A:0.25, C:0.20, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCATTGAACGAGATACAA
TACCGGGCTAAGTC
Done.