genome.fa.s1775.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1607
Parameters: 2 7 7 80 10 50 1000
Length:  33602

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--11267	1	11267.0	1	98	0	21931	99	0	0	0	0.06
12040--12073	14	2.4	14	85	0	50	67	2	0	29	1.05
12325--27684	1	15360.0	1	99	0	30567	0	0	0	99	0.01
27763--27825	33	1.9	33	96	0	117	22	0	0	77	0.76
27738--27786	1	49.0	1	100	0	98	0	0	0	100	0.00
28056--28141	1	86.0	1	87	0	100	8	0	1	90	0.50
28048--28141	48	2.0	48	91	0	152	10	1	2	86	0.72
28047--28160	50	2.3	50	83	4	142	14	0	6	78	0.97
28818--30797	359	5.5	351	80	10	1930	13	0	0	86	0.64
28819--30797	650	3.1	638	83	10	2219	13	0	0	86	0.64
28818--30628	651	2.8	638	85	9	2244	11	0	0	87	0.61
28817--30532	1	1716.0	1	79	0	1560	11	0	0	87	0.59
28817--30532	701	2.5	666	80	13	1886	11	0	0	87	0.59
30526--30577	18	2.8	19	82	5	70	25	1	0	73	0.94
30601--30627	1	27.0	1	100	0	54	0	0	0	100	0.00
28817--30718	669	2.8	646	80	14	1987	12	0	0	86	0.64
28823--30801	654	3.1	615	79	15	2008	13	0	0	85	0.65
30601--30804	86	2.5	80	78	15	220	24	0	0	75	0.85
28823--30803	19	108.0	19	73	19	469	13	0	0	85	0.65
29091--30802	22	80.8	22	73	17	367	13	0	0	85	0.66
31516--31548	12	2.6	13	95	4	59	6	0	3	90	0.52
31870--32633	1	764.0	1	98	0	1465	99	0	0	0	0.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32869--32928	30	1.9	30	86	6	84	28	0	0	71	0.86

Tables:   1

The End!