Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold3160

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10301
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28


Found at i:6598 original size:25 final size:26

Alignment explanation


    Indices: 6562--6614  Score: 99
    Period size: 25  Copynumber: 2.1  Consensus size: 26

       6552 TGTCTTCTGA

                                      
       6562 ATATCCCCTTCTTTTACCCTTAGCTG
          1 ATATCCCCTTCTTTTACCCTTAGCTG

                                      
       6588 ATAT-CCCTTCTTTTACCCTTAGCTG
          1 ATATCCCCTTCTTTTACCCTTAGCTG

              
       6613 AT
          1 AT

       6615 GGTATCCAGA


Statistics
Matches: 27,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  25   23  0.85
  26    4  0.15

ACGTcount: A:0.17, C:0.32, G:0.08, T:0.43


Consensus pattern (26 bp):   
ATATCCCCTTCTTTTACCCTTAGCTG
Done.