Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2235
Parameters: 2 7 7 80 10 50 1000
Length:  41634

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1866--1928
25
2.6
24
80
11
76
33
4
3
58
1.35
14474--14672
99
2.0
99
82
10
246
23
13
18
44
1.85
14774--15548
75
10.6
75
78
12
785
32
16
19
31
1.94
14774--15572
144
5.5
144
79
13
771
31
16
20
32
1.94
14775--15548
216
3.5
217
85
9
990
32
16
19
31
1.94
15689--15827
71
1.9
74
79
13
160
31
17
22
28
1.97
16700--16773
18
4.0
17
68
21
51
22
47
6
22
1.75
17232--17266
16
2.1
17
89
5
54
25
0
2
71
1.00
17258--17369
23
4.8
23
71
13
86
36
5
2
55
1.37
17390--17448
25
2.4
25
85
5
75
28
5
6
59
1.45
17509--17564
25
2.3
24
79
14
62
37
16
3
42
1.65
17689--17724
18
2.1
18
89
5
56
25
5
5
63
1.38
18521--18552
3
10.7
3
100
0
64
65
0
0
34
0.93
22795--22836
18
2.3
18
88
8
59
59
0
7
33
1.25
23255--23310
29
2.0
28
86
10
80
57
3
0
39
1.16
24138--24182
22
2.0
24
83
12
60
33
4
31
31
1.78
24771--24870
28
3.2
28
84
13
110
52
3
14
31
1.56
24808--24948
38
3.8
38
91
4
216
48
3
17
30
1.63
29378--29408
15
2.1
15
100
0
62
54
0
38
6
1.26
37313--37894
205
2.8
205
94
0
1015
30
18
22
28
1.97
37992--38254
44
6.0
44
81
5
255
30
18
25
25
1.98
37992--38254
87
3.0
88
76
9
304
30
18
25
25
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37962--38246
131
2.2
133
90
1
441
31
17
25
25
1.97
38236--38260
13
1.9
13
100
0
50
48
16
28
8
1.74
39303--39337
18
2.1
16
89
10
52
54
8
5
31
1.54
40025--40176
39
3.9
39
91
2
234
30
19
3
47
1.65

Tables:   1

The End!