genome.fa.s1787.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold2576
Parameters: 2 7 7 80 10 50 1000
Length:  43865

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1054--1083	11	2.9	10	90	9	51	23	10	10	56	1.62
5215--5321	26	4.2	26	95	1	189	31	5	26	36	1.80
6918--7057	27	5.2	27	76	14	137	18	22	22	35	1.95
6917--7060	54	2.7	54	88	5	211	18	23	22	35	1.96
6984--7075	27	3.4	26	75	14	82	22	25	17	34	1.96
6927--7075	81	1.8	79	81	14	180	20	24	19	35	1.96
8613--8698	34	2.5	34	88	0	118	13	13	33	38	1.85
9978--10103	28	4.5	28	74	12	107	26	23	11	38	1.89
10038--10129	26	3.3	26	71	14	94	32	25	8	33	1.86
10009--10133	57	2.3	55	91	6	216	30	24	8	36	1.86
10464--10869	154	2.6	156	81	2	462	27	19	19	33	1.96
11117--11181	14	4.9	13	77	15	55	18	0	43	38	1.50
11128--11238	7	15.6	7	69	10	64	21	0	36	41	1.60
11145--11186	22	2.0	21	86	13	59	23	2	38	35	1.68
11402--11440	15	2.7	15	88	4	62	25	0	30	43	1.55
11398--11447	22	2.3	21	79	3	55	26	0	28	46	1.53
13625--13674	26	1.9	26	83	0	64	52	6	6	36	1.51
13777--13843	27	2.7	24	73	17	57	55	1	7	35	1.37
14034--14096	24	2.5	26	85	10	78	58	3	3	34	1.30
17659--17698	15	2.8	14	81	7	53	27	0	0	72	0.85
17671--17697	5	5.4	5	100	0	54	22	0	0	77	0.76
17508--17869	105	3.4	105	90	4	575	35	5	3	56	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18142--18251	9	13.0	9	76	11	74	48	13	1	36	1.54
18122--18233	56	2.0	56	87	0	161	49	13	1	35	1.53
23254--23282	14	2.1	14	93	6	51	34	0	10	55	1.34
24000--24096	31	3.1	31	87	0	140	16	8	23	51	1.71
24169--24349	43	4.2	43	91	0	272	25	30	18	25	1.98
31217--31262	15	2.9	17	84	12	53	67	0	0	32	0.91
31227--31343	17	7.4	16	69	18	66	62	1	2	33	1.19
31217--31272	21	2.7	21	76	15	62	67	0	0	32	0.91
33073--33496	119	3.5	118	87	7	614	30	18	16	34	1.93

Tables:   1

The End!