genome.fa.s179.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold116_ERROPOS1184609
Parameters: 2 7 7 80 10 50 1000
Length:  202646

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1053--1204	9	16.7	9	68	14	53	36	1	15	46	1.57
1105--1182	30	2.6	30	95	0	138	37	3	14	44	1.63
1168--1199	16	2.0	16	93	0	55	34	0	15	50	1.45
4030--4061	15	2.1	15	94	0	55	28	6	0	65	1.16
4084--4135	14	3.7	14	77	10	52	42	34	1	21	1.64
4096--4160	21	3.0	21	76	10	60	47	35	0	16	1.47
9537--9562	11	2.4	11	100	0	52	76	0	0	23	0.78
9646--9706	23	2.7	23	100	0	122	29	14	26	29	1.95
10399--10804	44	9.2	44	91	1	670	28	15	31	25	1.96
14280--14651	130	2.9	130	82	0	422	29	19	18	33	1.95
14307--14757	130	3.5	129	79	4	354	27	19	18	33	1.96
18438--18549	24	4.7	24	87	0	152	39	30	11	18	1.87
22651--22701	26	2.0	26	96	0	93	29	35	23	11	1.90
22514--22779	103	2.6	104	92	3	446	30	30	20	18	1.96
23103--23166	30	2.2	29	81	10	76	29	28	6	35	1.82
23110--23166	30	1.9	30	85	3	80	29	24	7	38	1.82
30027--30177	71	2.1	72	91	2	243	30	29	16	23	1.96
30097--30318	103	2.2	103	93	1	374	31	31	18	18	1.95
30190--30240	26	2.0	26	96	0	93	29	35	23	11	1.90
30647--30710	30	2.2	29	81	10	76	29	28	6	35	1.82
30654--30710	30	1.9	30	85	3	80	29	24	7	38	1.82
32817--32859	20	2.2	20	86	0	59	62	2	6	27	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32851--32891	16	2.4	18	80	16	59	58	9	0	31	1.31
32886--32915	15	2.0	15	93	0	51	40	10	0	50	1.36
45476--45516	20	2.0	20	100	0	82	14	24	14	46	1.82
50051--50134	42	2.0	42	100	0	168	30	14	21	33	1.93
50413--50464	25	2.1	25	92	0	86	38	26	5	28	1.79
52602--52650	24	2.0	24	100	0	98	20	22	8	48	1.75
58240--58276	17	2.2	16	90	4	56	43	13	13	29	1.82
58526--58616	6	15.2	6	96	0	164	49	15	16	18	1.80
62314--62340	4	6.8	4	100	0	54	25	0	22	51	1.48
71045--71084	21	1.9	21	84	0	53	37	7	40	15	1.75
71089--71119	15	2.1	15	93	0	53	51	0	32	16	1.44
75264--75340	38	2.0	38	94	0	136	27	18	15	38	1.91
86718--87128	85	4.8	85	87	0	543	29	26	19	25	1.98
86723--87123	43	9.4	43	72	11	279	29	25	19	25	1.98
94313--94586	85	3.2	84	91	1	422	29	24	20	25	1.99
94266--94586	43	7.5	43	74	11	232	28	24	20	26	1.99
94861--94892	8	3.9	8	92	8	55	37	21	0	40	1.54
94861--94892	17	1.9	16	93	6	55	37	21	0	40	1.54
104447--104592	49	2.9	50	84	5	206	28	24	19	27	1.99
106851--107034	40	4.6	40	81	6	187	23	20	27	28	1.99
106851--107031	80	2.3	81	83	9	212	23	20	27	28	1.99
106931--107081	40	3.8	39	80	6	126	25	21	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114793--114976	40	4.6	40	81	6	187	23	20	27	28	1.99
114793--114973	80	2.3	81	83	9	212	23	20	27	28	1.99
114873--115023	40	3.8	39	80	6	126	25	21	27	25	1.99
122440--122479	19	2.1	19	86	9	55	70	7	0	22	1.12
126233--126312	39	2.1	39	95	0	142	36	21	21	21	1.96
131472--131567	33	2.9	33	79	17	119	27	23	20	28	1.99
133143--133197	15	3.7	16	76	13	64	63	0	29	7	1.21
139625--139678	28	1.9	28	88	0	81	29	27	14	27	1.95
139691--139809	43	2.9	42	85	6	163	32	26	17	23	1.97
147126--147185	28	2.1	28	90	0	93	30	26	13	30	1.94
147157--147311	42	3.7	42	82	5	199	32	27	15	24	1.95
152063--152088	13	2.0	13	100	0	52	53	15	7	23	1.67
160421--160643	40	5.6	39	82	5	236	25	21	27	25	1.99
160466--160643	79	2.2	79	84	5	234	26	20	27	25	1.99
160421--160662	79	3.1	78	75	12	226	26	21	27	24	1.99
171749--171800	26	2.0	26	96	0	95	28	34	23	13	1.92
171853--171903	26	2.0	26	96	0	93	29	35	23	11	1.90
171717--171982	103	2.6	104	93	1	446	30	30	20	18	1.96
172310--172373	30	2.2	29	81	10	76	29	28	6	35	1.82
172317--172373	30	1.9	30	85	3	80	29	24	7	38	1.82
177011--177110	24	4.2	24	75	19	91	35	31	14	20	1.92
185514--185565	20	2.6	20	84	6	61	61	5	0	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185533--185575	20	2.1	20	82	4	50	55	4	0	39	1.20
185802--185848	25	1.9	24	86	4	67	46	8	2	42	1.46
193372--193397	7	3.7	7	100	0	52	38	0	0	61	0.96

Tables:   1

The End!