Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1041

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6349
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.30


Found at i:3011 original size:31 final size:31

Alignment explanation


    Indices: 2975--3037  Score: 117
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2965 AATGCTTACC

                             *             
       2975 ATGCCATCATCCATTAACTATTAAAATGCTA
          1 ATGCCATCATCCATTAAATATTAAAATGCTA

                                           
       3006 ATGCCATCATCCATTAAATATTAAAATGCTA
          1 ATGCCATCATCCATTAAATATTAAAATGCTA

             
       3037 A
          1 A

       3038 AATGCATACA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.41, C:0.21, G:0.06, T:0.32


Consensus pattern (31 bp):   
ATGCCATCATCCATTAAATATTAAAATGCTA
Done.