Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 113 of 199
Found at i:37406192 original size:14 final size:14
Alignment explanation
Indices: 37406173--37406200 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37406163 CACGTCAGCA
37406173 AAATTAACCAATGT
1 AAATTAACCAATGT
37406187 AAATTAACCAATGT
1 AAATTAACCAATGT
37406201 TAATATTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.07, T:0.29
Consensus pattern (14 bp):
AAATTAACCAATGT
Found at i:37412187 original size:19 final size:17
Alignment explanation
Indices: 37412152--37412191 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 17
37412142 TATTTAGGTA
37412152 AAAATTTGGAGAATTTC
1 AAAATTTGGAGAATTTC
37412169 AAAATTTGTGAGTAATTTC
1 AAAATTTG-GAG-AATTTC
37412188 AAAA
1 AAAA
37412192 GGGATTTTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 8 0.38
18 3 0.14
19 10 0.48
ACGTcount: A:0.45, C:0.05, G:0.15, T:0.35
Consensus pattern (17 bp):
AAAATTTGGAGAATTTC
Found at i:37416036 original size:63 final size:62
Alignment explanation
Indices: 37415911--37416168 Score: 215
Period size: 63 Copynumber: 4.1 Consensus size: 62
37415901 TGTGTTAGGT
* ** * * * * *
37415911 CGTGTAATTCACTGTTTTGGAATTAGAGGCACATAGCCCAAAGACAC-AGA-TGCATGTTCAAGC
1 CGTGTAACT-ACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACTCGGGAGTG--TGTCCAAGC
* * * *
37415974 CGTGTAACTAACTGTTTTAGAATTAAAGGCACATGGGCTAGAGACTCGGGAGTGTGTCCAAGC
1 CGTGTAACT-ACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACTCGGGAGTGTGTCCAAGC
* * * * *
37416037 CGTCTAAC-ACTGTTTTGGAATTAGAGACGCACGAGCCAAAGACAT-GGGCA-TGTGTCCAAGC
1 CGTGTAACTACTGTTTTGGAATTAGAGGCACACGGGCTAAAGAC-TCGGG-AGTGTGTCCAAGC
* *
37416098 CGTGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACAC--TAGCTGTGTCCAAGC
1 CGTGTAACT-ACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACTCGGGAG-TGTGTCCAAGC
*
37416160 TGTGTAACT
1 CGTGTAACT
37416169 CACCAATTTG
Statistics
Matches: 158, Mismatches: 28, Indels: 19
0.77 0.14 0.09
Matches are distributed among these distances:
60 1 0.01
61 48 0.30
62 21 0.13
63 84 0.53
64 2 0.01
65 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.25
Consensus pattern (62 bp):
CGTGTAACTACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACTCGGGAGTGTGTCCAAGC
Found at i:37416179 original size:62 final size:63
Alignment explanation
Indices: 37416050--37416183 Score: 164
Period size: 62 Copynumber: 2.1 Consensus size: 63
37416040 CTAACACTGT
* * ***
37416050 TTTGGAATTAGAGACGCACGAGCCAAAGACATGGGCATGTGTCCAAGCCGTGTAACTCACTGT
1 TTTGGAATTAGAGACACACGAGCCAAAGACATGAGCATGTGTCCAAGCCGTGTAACTCACCAA
* * * *
37416113 TTTGGAATTAGAGGCACACGGGCTAAAGACACT-AGC-TGTGTCCAAGCTGTGTAACTCACCAA
1 TTTGGAATTAGAGACACACGAGCCAAAGACA-TGAGCATGTGTCCAAGCCGTGTAACTCACCAA
37416175 TTTGGAATT
1 TTTGGAATT
37416184 TGGGTCGCTC
Statistics
Matches: 61, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
62 31 0.51
63 29 0.48
64 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (63 bp):
TTTGGAATTAGAGACACACGAGCCAAAGACATGAGCATGTGTCCAAGCCGTGTAACTCACCAA
Found at i:37421832 original size:43 final size:42
Alignment explanation
Indices: 37421752--37421874 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
37421742 TGATAACATG
*
37421752 TAAGACCATGT-TTGGAACATTGGCATTGTATTGTGATTACGTA
1 TAAGACCATGTCTTGG-ACATTGGCATCGTA-TGTGATTACGTA
* **
37421795 TAAGACCATGTCTTGGACATTGGCATCGTTATATGATTTTGTA
1 TAAGACCATGTCTTGGACATTGGCATCG-TATGTGATTACGTA
* * *
37421838 TAAGACCCTGTCTAGGACAATGGCATCGATATGTGAT
1 TAAGACCATGTCTTGGACATTGGCATCG-TATGTGAT
37421875 AACATGTAAG
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
43 63 0.91
44 6 0.09
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.35
Consensus pattern (42 bp):
TAAGACCATGTCTTGGACATTGGCATCGTATGTGATTACGTA
Found at i:37421885 original size:43 final size:42
Alignment explanation
Indices: 37421741--37421885 Score: 130
Period size: 43 Copynumber: 3.4 Consensus size: 42
37421731 TTACTGAAAG
* *
37421741 GTGATAACATGTAAGACCATGT-TTGGAACATTGGCATTGTATT
1 GTGATAACATATAAGACCATGTCTTGG-ACATTGGCATCGTA-T
* *
37421784 GTGATTACGTATAAGACCATGTCTTGGACATTGGCATCGTTAT
1 GTGATAACATATAAGACCATGTCTTGGACATTGGCATCG-TAT
* **** * * *
37421827 ATGATTTTGTATAAGACCCTGTCTAGGACAATGGCATCGATAT
1 GTGATAACATATAAGACCATGTCTTGGACATTGGCATCG-TAT
*
37421870 GTGATAACATGTAAGA
1 GTGATAACATATAAGA
37421886 TCGTATCTGG
Statistics
Matches: 83, Mismatches: 17, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
43 77 0.93
44 6 0.07
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (42 bp):
GTGATAACATATAAGACCATGTCTTGGACATTGGCATCGTAT
Found at i:37425320 original size:23 final size:23
Alignment explanation
Indices: 37425294--37425339 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
37425284 TTTTTTTAAG
* * *
37425294 TTTTTCCTTTTTCTTTTTTCTTC
1 TTTTCCCTTCTTCTTCTTTCTTC
37425317 TTTTCCCTTCTTCTTCTTTCTTC
1 TTTTCCCTTCTTCTTCTTTCTTC
37425340 AATACCGCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (23 bp):
TTTTCCCTTCTTCTTCTTTCTTC
Found at i:37426423 original size:62 final size:63
Alignment explanation
Indices: 37426306--37426477 Score: 231
Period size: 63 Copynumber: 2.8 Consensus size: 63
37426296 CCTCTAGTCA
* * ** * *
37426306 TGTGT-CAGGCCATGTAACTCATTGTTTTAAAATTAGAGGCACACGAGCTAAAGACAC-GGTG
1 TGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACGGGCG
* * *
37426367 TGTGTTCAAGCCGTGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAGAGACACGGGCG
1 TGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACGGGCG
* *
37426430 TGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGCACACGGG
1 TGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGG
37426478 TGTGTGTCCA
Statistics
Matches: 97, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
61 5 0.05
62 45 0.46
63 47 0.48
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (63 bp):
TGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACGGGCG
Found at i:37426460 original size:63 final size:61
Alignment explanation
Indices: 37426306--37426477 Score: 236
Period size: 62 Copynumber: 2.8 Consensus size: 61
37426296 CCTCTAGTCA
* ** * *
37426306 TGTGTCAGGCCATGTAACTCATTGTTTTAAAATTAGAGGCACACGAGCTAAAGACACGGTG
1 TGTGTCAGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACGGCG
* * *
37426367 TGTGTTCAAGCCGTGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAGAGACACGGGCG
1 TGTG-TCAGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACAC-GGCG
*
37426430 TGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGCACACGGG
1 TGTGT-CAGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGG
37426478 TGTGTGTCCA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
61 4 0.04
62 47 0.48
63 46 0.47
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.26
Consensus pattern (61 bp):
TGTGTCAGGCCATGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAAAGACACGGCG
Found at i:37426475 original size:50 final size:50
Alignment explanation
Indices: 37426421--37426528 Score: 180
Period size: 50 Copynumber: 2.2 Consensus size: 50
37426411 CGGGCTAGAG
*
37426421 ACACGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGC
1 ACACGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGA
* * *
37426471 ACACGGGTGTGTGTCCAGGCCATGTAACTCACTGTTTTTGAATTAGAGGA
1 ACACGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGA
37426521 ACACGGGC
1 ACACGGGC
37426529 TAGAGGCACA
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (50 bp):
ACACGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGA
Found at i:37426561 original size:113 final size:112
Alignment explanation
Indices: 37426359--37426579 Score: 307
Period size: 113 Copynumber: 2.0 Consensus size: 112
37426349 CGAGCTAAAG
* * *
37426359 ACACGGTGTGTGTTCAAGCCGTGTAACTCACTGTTTTGGAATTAGAGGCACACGGGCTAGAGACA
1 ACACGGTGTGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGAACACGGGCTAGAGACA
** * * *
37426424 CGGGCGTGTGTCCAGGCCATGTAACTCACTATTTTGGAATTAGAGGC
66 CAAGCATGTGTCAAAGCCATGTAACTCACTATTTTGGAATTAGAGGC
* * *
37426471 ACACGGGTGTGTGTCCAGGCCATGTAACTCACTGTTTTTGAATTAGAGGAACACGGGCTAGAGGC
1 ACAC-GGTGTGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGAACACGGGCTAGAGAC
***
37426536 ACAAGCATGTGTCAAAGTTGTGTAACTCACTATTTTGGAATTAG
65 ACAAGCATGTGTCAAAGCCATGTAACTCACTATTTTGGAATTAG
37426580 GGATGCACAA
Statistics
Matches: 94, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
112 4 0.04
113 90 0.96
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (112 bp):
ACACGGTGTGTGTCCAAGCCATGTAACTCACTGTTTTGGAATTAGAGGAACACGGGCTAGAGACA
CAAGCATGTGTCAAAGCCATGTAACTCACTATTTTGGAATTAGAGGC
Found at i:37430471 original size:29 final size:31
Alignment explanation
Indices: 37430439--37430506 Score: 70
Period size: 29 Copynumber: 2.3 Consensus size: 31
37430429 GATTATTTAT
37430439 ATAAGAGTCAAACCTTT-TA-AAATAGTT-AA
1 ATAAGAGTCAAACCTTTATAGAAATA-TTCAA
* ** *
37430468 ATAATAGTTTAACCTTTATAGAAGTATTCAA
1 ATAAGAGTCAAACCTTTATAGAAATATTCAA
37430499 ATAAGAGT
1 ATAAGAGT
37430507 TTTTCACGCA
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
29 14 0.45
30 4 0.13
31 13 0.42
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.34
Consensus pattern (31 bp):
ATAAGAGTCAAACCTTTATAGAAATATTCAA
Found at i:37434074 original size:38 final size:38
Alignment explanation
Indices: 37434032--37434214 Score: 276
Period size: 38 Copynumber: 4.8 Consensus size: 38
37434022 AATATACATA
* **
37434032 CACAAAGCCTGCTAGGCACGGAGCCCGAATATCATTGG
1 CACAAAGCCTGCTAGGCATGGAGCCCGAATATCACCGG
* * *
37434070 CACAAAGCCTGCTAGACATAGAGCCCGAATATCACCAG
1 CACAAAGCCTGCTAGGCATGGAGCCCGAATATCACCGG
*
37434108 CACAAAGCCTGCTAGGCACGGAGCCCGAATATCACCGG
1 CACAAAGCCTGCTAGGCATGGAGCCCGAATATCACCGG
* * *
37434146 CACAAAGCCTACTAGGCGTGGAGCCCAAATATCACCGG
1 CACAAAGCCTGCTAGGCATGGAGCCCGAATATCACCGG
37434184 CACAAAGCCTGCTAGGCATGGAGCCCGAATA
1 CACAAAGCCTGCTAGGCATGGAGCCCGAATA
37434215 ACATTACATT
Statistics
Matches: 128, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 128 1.00
ACGTcount: A:0.32, C:0.31, G:0.24, T:0.13
Consensus pattern (38 bp):
CACAAAGCCTGCTAGGCATGGAGCCCGAATATCACCGG
Found at i:37435577 original size:8 final size:8
Alignment explanation
Indices: 37435564--37435601 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
37435554 AACGAAACAA
37435564 AAAGAAAG
1 AAAGAAAG
37435572 AAAGAAAG
1 AAAGAAAG
37435580 AAAGAAA-
1 AAAGAAAG
*
37435587 AAGGGAAAG
1 AA-AGAAAG
37435596 AAAGAA
1 AAAGAA
37435602 GAAGCGCGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
7 2 0.08
8 22 0.85
9 2 0.08
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (8 bp):
AAAGAAAG
Found at i:37436027 original size:19 final size:20
Alignment explanation
Indices: 37436003--37436043 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
37435993 GAATTTAGGC
37436003 AAATATTAAATA-AAAATTG
1 AAATATTAAATATAAAATTG
* *
37436022 AAATATTCAATATGAAATTG
1 AAATATTAAATATAAAATTG
37436042 AA
1 AA
37436044 TTGTGTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.59, C:0.02, G:0.07, T:0.32
Consensus pattern (20 bp):
AAATATTAAATATAAAATTG
Found at i:37436904 original size:20 final size:17
Alignment explanation
Indices: 37436888--37436921 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37436878 TAAATATGGT
37436888 CTTAAATATTAAAATATG
1 CTTAAA-ATTAAAATATG
*
37436906 CTTATAATTAAAATAT
1 CTTAAAATTAAAATAT
37436922 ACATATTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (17 bp):
CTTAAAATTAAAATATG
Found at i:37439374 original size:22 final size:21
Alignment explanation
Indices: 37439330--37439374 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 21
37439320 CCCTTTAAAT
* *
37439330 CAAAACAAACCAACCTTGGAG
1 CAAAACAAACCAACCATGAAG
*
37439351 CAAAACAAAAGCAACCATGAAG
1 CAAAAC-AAACCAACCATGAAG
37439373 CA
1 CA
37439375 CAAAAACAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.53, C:0.27, G:0.13, T:0.07
Consensus pattern (21 bp):
CAAAACAAACCAACCATGAAG
Found at i:37442538 original size:97 final size:96
Alignment explanation
Indices: 37442358--37442541 Score: 226
Period size: 97 Copynumber: 1.9 Consensus size: 96
37442348 ATAGTTTGTG
* * * *
37442358 GGTCATTGAAGGATTTATCTCCATATCTAAGTTCAAATATAAGTTGGAAACATGAACTTGAAGCA
1 GGTCATTGAAGGATTTATCTCCATACCTAAGTTCAAATATAAGTCGGAAACAAGAACTTCAAGCA
**
37442423 AAATGAAGGGCTGGAGCAACATGGATATACA
66 AAATGAAGGGCTAAAGCAACATGGATATACA
* * * ** *
37442454 GGTCATTGCAGGGTCTTATCTCCATACCTATGTTCGGATATAAGTCGGAAACAAGTACTTCAAGC
1 GGTCATTGAAGGAT-TTATCTCCATACCTAAGTTCAAATATAAGTCGGAAACAAGAACTTCAAGC
*
37442519 AAAATGAAGAG-TCAAAGCAACAT
65 AAAATGAAGGGCT-AAAGCAACAT
37442542 AACTTAGCAG
Statistics
Matches: 73, Mismatches: 13, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
96 13 0.18
97 60 0.82
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (96 bp):
GGTCATTGAAGGATTTATCTCCATACCTAAGTTCAAATATAAGTCGGAAACAAGAACTTCAAGCA
AAATGAAGGGCTAAAGCAACATGGATATACA
Found at i:37448062 original size:24 final size:24
Alignment explanation
Indices: 37448033--37448105 Score: 110
Period size: 24 Copynumber: 3.0 Consensus size: 24
37448023 AACGACTCGT
*
37448033 CTGGAAGAAACAGTCATGTCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
*
37448057 CTGGAAGAAGCAGTCATGTAAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
* *
37448081 CTGGAAGAAGCAGCCATGGCAGCA
1 CTGGAAGAAGCAGTCATGTCAGCA
37448105 C
1 C
37448106 AATTACACTT
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.36, C:0.22, G:0.29, T:0.14
Consensus pattern (24 bp):
CTGGAAGAAGCAGTCATGTCAGCA
Found at i:37460165 original size:10 final size:10
Alignment explanation
Indices: 37460154--37460189 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
37460144 ATCTAATTTG
*
37460154 TTTTTTTTTG
1 TTTTTTTTTA
37460164 TTTTTTTTTA
1 TTTTTTTTTA
*
37460174 TTTTATTTTA
1 TTTTTTTTTA
37460184 TTTTTT
1 TTTTTT
37460190 CTCTTTTCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.08, C:0.00, G:0.03, T:0.89
Consensus pattern (10 bp):
TTTTTTTTTA
Found at i:37472284 original size:27 final size:27
Alignment explanation
Indices: 37472253--37472312 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
37472243 GTGGAAATTG
37472253 AATATTATGAGCTCATATATGTTCCTT
1 AATATTATGAGCTCATATATGTTCCTT
37472280 AATATTATGAGCTCATATATGTTCCTT
1 AATATTATGAGCTCATATATGTTCCTT
*
37472307 GATATT
1 AATATT
37472313 CATCTGAATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (27 bp):
AATATTATGAGCTCATATATGTTCCTT
Found at i:37472942 original size:16 final size:16
Alignment explanation
Indices: 37472913--37472964 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
37472903 TCAATATTTT
* *
37472913 TATAATATATAAATTA
1 TATAAAATAAAAATTA
37472929 TATAAAATAAAAATTA
1 TATAAAATAAAAATTA
*
37472945 TAAAAACATTAAAAA-TA
1 TATAAA-A-TAAAAATTA
37472962 TAT
1 TAT
37472965 TAATGATTCA
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
16 19 0.63
17 5 0.17
18 6 0.20
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (16 bp):
TATAAAATAAAAATTA
Found at i:37476208 original size:14 final size:14
Alignment explanation
Indices: 37476189--37476217 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
37476179 TATAGCTTTG
37476189 ACTTTAAAATGGTT
1 ACTTTAAAATGGTT
37476203 ACTTTAAAATGGTT
1 ACTTTAAAATGGTT
37476217 A
1 A
37476218 TATTTTAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (14 bp):
ACTTTAAAATGGTT
Found at i:37478059 original size:47 final size:47
Alignment explanation
Indices: 37477986--37478078 Score: 177
Period size: 47 Copynumber: 2.0 Consensus size: 47
37477976 AAATAAGTTA
37477986 CATTACAGAGATTTACAATCTAATGAACAACTTACGAATATGAGTAG
1 CATTACAGAGATTTACAATCTAATGAACAACTTACGAATATGAGTAG
*
37478033 CATTACAGAGATTTACAATCTGATGAACAACTTACGAATATGAGTA
1 CATTACAGAGATTTACAATCTAATGAACAACTTACGAATATGAGTA
37478079 CATCGATATT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (47 bp):
CATTACAGAGATTTACAATCTAATGAACAACTTACGAATATGAGTAG
Found at i:37482589 original size:35 final size:34
Alignment explanation
Indices: 37482547--37482624 Score: 95
Period size: 35 Copynumber: 2.3 Consensus size: 34
37482537 TTGATAATGA
*
37482547 TATTTTATTAATTTTTTAATTA-ATTAGTTAAATAT
1 TATTTTATTAATATTTTAATTAGA-TA-TTAAATAT
* * *
37482582 TATTTTATTAATATTTTACTTAGATATTTATTAT
1 TATTTTATTAATATTTTAATTAGATATTAAATAT
37482616 TATTTTATT
1 TATTTTATT
37482625 TAAAAATTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
34 15 0.39
35 22 0.58
36 1 0.03
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (34 bp):
TATTTTATTAATATTTTAATTAGATATTAAATAT
Found at i:37482610 original size:13 final size:11
Alignment explanation
Indices: 37482546--37482624 Score: 61
Period size: 11 Copynumber: 6.9 Consensus size: 11
37482536 GTTGATAATG
37482546 ATATTTTATTA
1 ATATTTTATTA
*
37482557 ATTTTTTAATTA
1 ATATTTT-ATTA
* * *
37482569 ATTAGTTAAATA
1 A-TATTTTATTA
*
37482581 TTATTTTATTA
1 ATATTTTATTA
37482592 ATATTTTACTTA
1 ATATTTTA-TTA
37482604 GATA-TTTATTA
1 -ATATTTTATTA
*
37482615 TTATTTTATT
1 ATATTTTATT
37482625 TAAAAATTGG
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
10 2 0.04
11 29 0.56
12 15 0.29
13 6 0.12
ACGTcount: A:0.34, C:0.01, G:0.03, T:0.62
Consensus pattern (11 bp):
ATATTTTATTA
Found at i:37491555 original size:22 final size:19
Alignment explanation
Indices: 37491530--37491571 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
37491520 TGATAATCAT
37491530 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
37491552 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
37491571 T
1 T
37491572 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:37493185 original size:25 final size:27
Alignment explanation
Indices: 37493135--37493193 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 27
37493125 TAATATATAT
* *
37493135 TATA-ATATTATATCTTAATTATTAAG
1 TATATATATTATATATTAATTAATAAG
37493161 TATATATATTATATATT-A-TAATAAG
1 TATATATATTATATATTAATTAATAAG
*
37493186 TAAATATA
1 TATATATA
37493194 ATAAATAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 13 0.45
26 5 0.17
27 11 0.38
ACGTcount: A:0.47, C:0.02, G:0.03, T:0.47
Consensus pattern (27 bp):
TATATATATTATATATTAATTAATAAG
Found at i:37494269 original size:40 final size:40
Alignment explanation
Indices: 37494156--37494287 Score: 135
Period size: 40 Copynumber: 3.4 Consensus size: 40
37494146 GTCGATAAGA
* * *
37494156 CACTAGGTGTCAAATTATTACTTCGGATATATTCGATGAGG
1 CACTGGGTGTCAAATTATTACTTCGGAT-TATCCAATGAGG
** * * *
37494197 CACTGGGTGT-TGA-T-TTACTTCGGTTTAGCCAATGAGA
1 CACTGGGTGTCAAATTATTACTTCGGATTATCCAATGAGG
* *
37494234 CATTGGGTGTCAAATTATTACTTCGAATTATCCAATGAGG
1 CACTGGGTGTCAAATTATTACTTCGGATTATCCAATGAGG
*
37494274 CACTGGGTGCCAAA
1 CACTGGGTGTCAAA
37494288 CTGGTGTGTT
Statistics
Matches: 71, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
37 17 0.24
38 11 0.15
39 2 0.03
40 32 0.45
41 9 0.13
ACGTcount: A:0.27, C:0.17, G:0.23, T:0.33
Consensus pattern (40 bp):
CACTGGGTGTCAAATTATTACTTCGGATTATCCAATGAGG
Found at i:37496029 original size:18 final size:18
Alignment explanation
Indices: 37496006--37496041 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37495996 AGCAACGAGT
**
37496006 TGAAGAAAGTGAAGATCC
1 TGAAGAAAAAGAAGATCC
37496024 TGAAGAAAAAGAAGATCC
1 TGAAGAAAAAGAAGATCC
37496042 CACAGAGATC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.50, C:0.11, G:0.25, T:0.14
Consensus pattern (18 bp):
TGAAGAAAAAGAAGATCC
Found at i:37503789 original size:15 final size:16
Alignment explanation
Indices: 37503763--37503797 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
37503753 ATTGTGTATC
37503763 ATATTATTTAATATAA
1 ATATTATTTAATATAA
37503779 ATATT-TTTAATATAA
1 ATATTATTTAATATAA
37503794 ATAT
1 ATAT
37503798 AATCTTAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATATTATTTAATATAA
Found at i:37504288 original size:25 final size:26
Alignment explanation
Indices: 37504241--37504290 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
37504231 TCACAAACAA
*
37504241 TAAATCAAACAAAGAAACAAAATTTT
1 TAAATCAAACAAACAAACAAAATTTT
* *
37504267 TAAAT-AAACAAACCAACTAAATTT
1 TAAATCAAACAAACAAACAAAATTT
37504291 AAATATATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.60, C:0.14, G:0.02, T:0.24
Consensus pattern (26 bp):
TAAATCAAACAAACAAACAAAATTTT
Found at i:37506590 original size:241 final size:241
Alignment explanation
Indices: 37506167--37506653 Score: 920
Period size: 241 Copynumber: 2.0 Consensus size: 241
37506157 GGGTTTTAGT
*
37506167 ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTGCTCCTC
1 ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTACTCCTC
37506232 CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
66 CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
* *
37506297 CGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCATACAATCATTACTGATTTGAGCAT
131 AGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCATACAATCATTACTGATTTAAGCAT
37506362 GTTAAATGACGATTTTAGGTTATGGGAGTTTCGTGGTGGCATTTAC
196 GTTAAATGACGATTTTAGGTTATGGGAGTTTCGTGGTGGCATTTAC
*
37506408 ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAGGAGAGGATTGAGAGGAAATTGGTACTCCTC
1 ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTACTCCTC
37506473 CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
66 CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
*
37506538 AGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCGTACAATCATTACTGATTTAAGCAT
131 AGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCATACAATCATTACTGATTTAAGCAT
*
37506603 GTTAAATGACGATTTTAGGTTCTGGGAGTTTCGTGGTGGCATTTAC
196 GTTAAATGACGATTTTAGGTTATGGGAGTTTCGTGGTGGCATTTAC
37506649 ATCGA
1 ATCGA
37506654 AATTGGATCA
Statistics
Matches: 240, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
241 240 1.00
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (241 bp):
ATCGATTTTAATTATGCACTTTTGTGTGCTGCCAAGAGAGGATTGAGAGGAAATTGGTACTCCTC
CAACCATTTAAACGGCAGGTTGTTGTTGTTCACTGTTGCATAAGTATTTTAACGTTTTTGGAAGC
AGAATATGGGCATTTTTGTGGCATATTTAATTTAGTTTTCATACAATCATTACTGATTTAAGCAT
GTTAAATGACGATTTTAGGTTATGGGAGTTTCGTGGTGGCATTTAC
Found at i:37508100 original size:18 final size:18
Alignment explanation
Indices: 37508077--37508112 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
37508067 TTTATGAACC
37508077 TTTTATAATTTTAAAATT
1 TTTTATAATTTTAAAATT
*
37508095 TTTTATAATTTTTAAATT
1 TTTTATAATTTTAAAATT
37508113 ATTTGTGGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTATAATTTTAAAATT
Found at i:37509351 original size:20 final size:20
Alignment explanation
Indices: 37509326--37509365 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
37509316 CATAAAATGA
*
37509326 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
37509346 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
37509366 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:37509856 original size:26 final size:26
Alignment explanation
Indices: 37509823--37509880 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
37509813 ATATCAAAAT
*
37509823 TTATAGAGACCAATTTAAAATCTTGA
1 TTATAGAGACCAATTTAAAATCTAGA
*
37509849 TTATAGAGACCAATTTAATATCTAGA
1 TTATAGAGACCAATTTAAAATCTAGA
37509875 TTATAG
1 TTATAG
37509881 TTTGAGGATG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.36
Consensus pattern (26 bp):
TTATAGAGACCAATTTAAAATCTAGA
Found at i:37514054 original size:66 final size:66
Alignment explanation
Indices: 37513948--37514072 Score: 189
Period size: 66 Copynumber: 1.9 Consensus size: 66
37513938 CCAGTTACTC
* *
37513948 CAACCATATGTTTTGAAGAAGAAAAATGGTGTTTGGCAAGAGAGAAAATGAGAGAAAAAATGGCA
1 CAACCATATGTCTTGAAGAAGAAAAATGGTGTTTGGCAAGAAAGAAAATGAGAGAAAAAATGGCA
37514013 G
66 G
* * *
37514014 CAACCATGTGTCTTGAAGAA-AAAAAGTGGTGTTTGGCAAGAAAGAATATTAGAGAAAAA
1 CAACCATATGTCTTGAAGAAGAAAAA-TGGTGTTTGGCAAGAAAGAAAATGAGAGAAAAA
37514073 TTTTTTGTTA
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
65 5 0.09
66 48 0.91
ACGTcount: A:0.46, C:0.08, G:0.26, T:0.21
Consensus pattern (66 bp):
CAACCATATGTCTTGAAGAAGAAAAATGGTGTTTGGCAAGAAAGAAAATGAGAGAAAAAATGGCA
G
Found at i:37514668 original size:30 final size:30
Alignment explanation
Indices: 37514608--37514668 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
37514598 AATGGAAGTG
* * *
37514608 AGTGATTAAAATAAAAATTTATTAAAATTA
1 AGTGAATAAAATAAAAATATAATAAAATTA
* *
37514638 AGTGAATAAAATAAATATATAATAATATTA
1 AGTGAATAAAATAAAAATATAATAAAATTA
37514668 A
1 A
37514669 TTAACGAGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.59, C:0.00, G:0.07, T:0.34
Consensus pattern (30 bp):
AGTGAATAAAATAAAAATATAATAAAATTA
Found at i:37519254 original size:3 final size:3
Alignment explanation
Indices: 37519246--37519276 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
37519236 AGTATAGAGT
37519246 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG T
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG T
37519277 TGCATTCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.32, T:0.35
Consensus pattern (3 bp):
TAG
Found at i:37522627 original size:21 final size:21
Alignment explanation
Indices: 37522603--37522659 Score: 105
Period size: 21 Copynumber: 2.7 Consensus size: 21
37522593 CAGCTCAATT
37522603 TGGGAGCAATTGCCATGGATG
1 TGGGAGCAATTGCCATGGATG
37522624 TGGGAGCAATTGCCATGGATG
1 TGGGAGCAATTGCCATGGATG
*
37522645 TGGGAACAATTGCCA
1 TGGGAGCAATTGCCA
37522660 AGTTCAATAC
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.26, C:0.16, G:0.35, T:0.23
Consensus pattern (21 bp):
TGGGAGCAATTGCCATGGATG
Found at i:37534453 original size:27 final size:26
Alignment explanation
Indices: 37534417--37534480 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
37534407 ACACTTTTCG
*
37534417 TATTCATTTTT-GAGCCAGTAGTCTTT
1 TATTC-TTTTTCGAGCAAGTAGTCTTT
* * *
37534443 TCATTCTTTTTCGAGTAATTATTCTTT
1 T-ATTCTTTTTCGAGCAAGTAGTCTTT
37534470 TATTCTTTTTC
1 TATTCTTTTTC
37534481 CACGTCATTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 16 0.50
27 16 0.50
ACGTcount: A:0.17, C:0.16, G:0.09, T:0.58
Consensus pattern (26 bp):
TATTCTTTTTCGAGCAAGTAGTCTTT
Found at i:37539438 original size:44 final size:44
Alignment explanation
Indices: 37539385--37539897 Score: 283
Period size: 44 Copynumber: 11.3 Consensus size: 44
37539375 CCTTTACTTT
* *
37539385 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTC
* * *
37539429 AATCTGCTCCGCTGTAATCTCAGGGAGGTAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTC
* * *** *
37539473 AATCTGATACGATCTACTCTACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTT
1 AATC---T--G--CT-C-C-ACTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTC
* * * *
37539527 AATCCGTTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTC
** *
37539571 AATCTGCTCTGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTC
* * *** *
37539615 AATCTGATTCTATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCT-TTTATTTT
1 AATCTG-------CT-C-C-ACTGTAATC-TCAGGGAGATAAGAT-TACTGGCTTC
* * * * *
37539669 AATCCGCTCCACTGTAATCCCAGAGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTC
* *
37539713 AATCTGCTCC-GTGGTAATCTCAGGGAGATAAGATT--T-GATGT-
1 AATCTGCTCCACT-GTAATCTCAGGGAGATAAGATTACTGGCT-TC
* * * * *** *
37539754 GATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCT-CTTATTTT
1 AATCTGCTCCACTGTAATC-TCAGGGAGATAAGAT-TACTGGCTTC
* * *
37539798 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTC
* *
37539842 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTC
* *
37539886 AGTCTGTTCCAC
1 AATCTGCTCCAC
37539898 CACTGTCAGA
Statistics
Matches: 355, Mismatches: 76, Indels: 76
0.70 0.15 0.15
Matches are distributed among these distances:
40 1 0.00
41 27 0.08
42 4 0.01
43 5 0.01
44 238 0.67
45 7 0.02
46 2 0.01
47 4 0.01
49 2 0.01
51 4 0.01
52 2 0.01
53 5 0.01
54 53 0.15
55 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAGGGAGATAAGATTACTGGCTTC
Found at i:37539590 original size:142 final size:142
Alignment explanation
Indices: 37539334--37539891 Score: 849
Period size: 142 Copynumber: 4.0 Consensus size: 142
37539324 GAGATAAGAC
* * * *
37539334 CTGATACGATCTACTCAACTGTAACTTCAGAAAGAAAAGATCCTTTACTTTAATCCGCTCCACTG
1 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
37539399 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGGTAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
37539464 TCTGGCTTCAAT
131 TCTGGCTTCAAT
*
37539476 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGTTCCACTG
1 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
*
37539541 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
37539606 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
37539618 CTGATTCTATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTG
1 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
* *
37539683 TAATCCCAGAGAGATAGGATTACTAGCTTCAATCTGCTCCG-TGGTAATCTCAGGGAGATAAGA-
66 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCT-GTAATCTCAGGGAGATAAGAT
37539746 TT-T-G-----A-
130 TTCTGGCTTCAAT
37539751 -TG-T--GATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTCTTATTTTAATCCGCTCCACT
1 CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTAATCCGCTCCACT
**
37539811 GTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTACTGTAATCTCAGGGAGATAAGAT
65 GTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
*
37539876 TTCTGGCTTCAGT
130 TTCTGGCTTCAAT
37539889 CTG
1 CTG
37539892 TTCCACCACT
Statistics
Matches: 381, Mismatches: 22, Indels: 29
0.88 0.05 0.07
Matches are distributed among these distances:
128 1 0.00
129 111 0.29
130 3 0.01
131 2 0.01
132 3 0.01
134 1 0.00
139 3 0.01
140 1 0.00
141 3 0.01
142 253 0.66
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.33
Consensus pattern (142 bp):
CTGATACGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCAAT
Found at i:37539782 original size:129 final size:128
Alignment explanation
Indices: 37539626--37539877 Score: 443
Period size: 129 Copynumber: 2.0 Consensus size: 128
37539616 ATCTGATTCT
*
37539626 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTTTTATTTTAATCCGCTCCACTGTAATCCCA
1 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAATCCCA
37539691 GAGAGATAGGATTACTAGCTTCAATCTGCTC-CGTGGTAATCTCAGGGAGATAAGATTTGATGTG
66 GAGAGATAGGATTACTAGCTTCAATCTGCTCAC-T-GTAATCTCAGGGAGATAAGATTTGATGTG
*
37539755 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAATCTCA
1 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAATCCCA
*
37539820 GGGAGATAGGATTACTAGCTTCAATCTGCTCTACTGTAATCTCAGGGAGATAAGATTT
66 GAGAGATAGGATTACTAGCTTCAATCTGCTC-ACTGTAATCTCAGGGAGATAAGATTT
37539878 CTGGCTTCAG
Statistics
Matches: 118, Mismatches: 3, Indels: 4
0.94 0.02 0.03
Matches are distributed among these distances:
129 116 0.98
130 1 0.01
131 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.18, T:0.33
Consensus pattern (128 bp):
ATCTACTCTACTGTAACTTCAGAGAGATAAGATCTCTTATTTTAATCCGCTCCACTGTAATCCCA
GAGAGATAGGATTACTAGCTTCAATCTGCTCACTGTAATCTCAGGGAGATAAGATTTGATGTG
Found at i:37554827 original size:50 final size:50
Alignment explanation
Indices: 37554703--37554950 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
37554693 GATAATAACA
* * ** * *
37554703 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
37554754 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
37554804 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
37554854 TGCCCATGCCATGTCCCAGACAT-GTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* *
37554908 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
37554951 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 21, Indels: 11
0.84 0.10 0.05
Matches are distributed among these distances:
49 19 0.11
50 73 0.43
51 33 0.20
52 2 0.01
53 1 0.01
54 2 0.01
55 22 0.13
56 16 0.10
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:37554931 original size:105 final size:101
Alignment explanation
Indices: 37554702--37554950 Score: 342
Period size: 105 Copynumber: 2.4 Consensus size: 101
37554692 TGATAATAAC
**
37554702 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
37554767 TCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCATCTAGG
* *
37554804 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
37554867 TCCCAGACAT-GTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-AGG
* *
37554908 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37554951 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
99 19 0.14
100 31 0.23
101 36 0.27
102 3 0.02
103 1 0.01
104 2 0.02
105 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (101 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCATCTAGG
Found at i:37555066 original size:13 final size:13
Alignment explanation
Indices: 37555045--37555076 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37555035 ACTTGGATCA
*
37555045 TCATCAAATAAAT
1 TCATAAAATAAAT
37555058 TCATAAAATAAAT
1 TCATAAAATAAAT
37555071 TCATAA
1 TCATAA
37555077 TTGCTGCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:37555322 original size:30 final size:30
Alignment explanation
Indices: 37555287--37555344 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37555277 CCTCGACTCT
*
37555287 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
37555317 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
37555345 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:37560043 original size:18 final size:19
Alignment explanation
Indices: 37560003--37560045 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 19
37559993 TTTGCTCTTT
37560003 CTCTTTCT--TTTAACAAG
1 CTCTTTCTACTTTAACAAG
37560020 -TC-TTCTACTTT-ACAAG
1 CTCTTTCTACTTTAACAAG
37560036 CTCTTTCTAC
1 CTCTTTCTAC
37560046 CAGAACAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
15 4 0.18
16 7 0.32
17 5 0.23
18 6 0.27
ACGTcount: A:0.21, C:0.28, G:0.05, T:0.47
Consensus pattern (19 bp):
CTCTTTCTACTTTAACAAG
Found at i:37562391 original size:50 final size:50
Alignment explanation
Indices: 37562220--37562460 Score: 288
Period size: 50 Copynumber: 4.7 Consensus size: 50
37562210 ACATGCCAAA
** *
37562220 GCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGAT-GGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCAT-CTCGGTGCCCAT
* * *
37562271 GCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGGTG-CCAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCAT
*
37562320 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCAT
* * *
37562370 GCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATC-T-CGG-TGCCCAT
* *
37562426 ACCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37562461 TTACCCAAAT
Statistics
Matches: 165, Mismatches: 17, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
49 46 0.28
50 48 0.29
51 28 0.17
53 2 0.01
54 1 0.01
55 2 0.01
56 38 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCAT
Found at i:37562392 original size:99 final size:104
Alignment explanation
Indices: 37562212--37562460 Score: 330
Period size: 99 Copynumber: 2.4 Consensus size: 104
37562202 TGATAATAAC
* **
37562212 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGATGGTGCCCATGCCATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATGATGGTGCCCATGCCATG
* *
37562277 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
37562314 -TGCC-ACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGAT-GGTGCCCATGCCATG
37562376 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
** *
37562418 ATGCCAATACCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
37562461 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
98 1 0.01
99 49 0.38
100 31 0.24
101 4 0.03
102 3 0.02
103 1 0.01
104 2 0.02
105 4 0.03
106 34 0.26
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.26
Consensus pattern (104 bp):
ATGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:37562576 original size:13 final size:13
Alignment explanation
Indices: 37562555--37562586 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
37562545 ACTTGGATCA
*
37562555 TCATCAAATAAAT
1 TCATAAAATAAAT
37562568 TCATAAAATAAAT
1 TCATAAAATAAAT
37562581 TCATAA
1 TCATAA
37562587 TTGCTGCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:37562833 original size:30 final size:30
Alignment explanation
Indices: 37562798--37562855 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
37562788 CCTCGACTCT
*
37562798 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
37562828 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
37562856 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:37563899 original size:14 final size:14
Alignment explanation
Indices: 37563880--37563907 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37563870 TCGGCCAACC
37563880 TGGCTGTACGGAGG
1 TGGCTGTACGGAGG
37563894 TGGCTGTACGGAGG
1 TGGCTGTACGGAGG
37563908 CGCGCGTGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.50, T:0.21
Consensus pattern (14 bp):
TGGCTGTACGGAGG
Found at i:37567201 original size:50 final size:50
Alignment explanation
Indices: 37567133--37567250 Score: 148
Period size: 50 Copynumber: 2.4 Consensus size: 50
37567123 AAGACACCAG
* * * * *
37567133 TCTTATCGCCTTGACGTTGCAATGGAATAGATTGAAGCCACAACGGCGAA
1 TCTTATCTCCCTGGCGTTGCAACGGAATAGATTGAAGCCACAACGGCAAA
* * *
37567183 TCTTA-CTTCCCTGGCGTTGCAACGGAGTAGATTGAAGCCACAATGGTAAA
1 TCTTATC-TCCCTGGCGTTGCAACGGAATAGATTGAAGCCACAACGGCAAA
37567233 TCTTATCTCCCTGGCGTT
1 TCTTATCTCCCTGGCGTT
37567251 AAGACTTAAA
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
49 1 0.02
50 56 0.97
51 1 0.02
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (50 bp):
TCTTATCTCCCTGGCGTTGCAACGGAATAGATTGAAGCCACAACGGCAAA
Found at i:37567410 original size:50 final size:50
Alignment explanation
Indices: 37567320--37567587 Score: 144
Period size: 50 Copynumber: 5.4 Consensus size: 50
37567310 TTGGCATTAC
* * * *
37567320 AGTGGAACGGATTGAAGCCACAATGGCGAATCTTG-CTTCCCTGGCAGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATC-TGATTTCCCTGACAGTGT
* * * * * *
37567370 AGTGGAACAGATTAAAGCTACGACGGCGAATCTGATTTCCCCGACATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTGATTTCCCTGACAGTGT
* ** * * * * * *
37567420 AATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTCTCTGACGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTGATTTCCCTGACAGTGT
* ***** * * * *
37567470 AGTGGAATAGATTGAAGCTGTGGCGGCGGATCTGATTTCCCCGACATTGC
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTGATTTCCCTGACAGTGT
* ** * * ** * * *
37567520 AATTAAAAAGATTGAAGCCACAACTGTAAATCTTACTTT-CCTGGCGGTGT
1 AGTGGAACAGATTGAAGCCACAACGGCGAATCTGA-TTTCCCTGACAGTGT
*
37567570 AGTGGAACAGATTAAAGC
1 AGTGGAACAGATTGAAGC
37567588 TACGACGGTG
Statistics
Matches: 149, Mismatches: 67, Indels: 4
0.68 0.30 0.02
Matches are distributed among these distances:
49 2 0.01
50 144 0.97
51 3 0.02
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCACAACGGCGAATCTGATTTCCCTGACAGTGT
Found at i:37567451 original size:100 final size:100
Alignment explanation
Indices: 37567329--37567635 Score: 409
Period size: 100 Copynumber: 3.1 Consensus size: 100
37567319 CAGTGGAACG
* * * *
37567329 GATTGAAGCCACAATGGCGAATCTTGCTTCCCTGGCAGTGTAGTGGAACAGATTAAAGCTACGAC
1 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCTACGAC
37567394 GGCGAATCTGATTTCCCCGACATTGCAATTAAAAA
66 GGCGAATCTGATTTCCCCGACATTGCAATTAAAAA
* * * * ** *
37567429 GATTGAAGCCACAACGGTGAATCTTACTTCTCTGACGGTGTAGTGGAATAGATTGAAGCTGTGGC
1 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCTACGAC
*
37567494 GGCGGATCTGATTTCCCCGACATTGCAATTAAAAA
66 GGCGAATCTGATTTCCCCGACATTGCAATTAAAAA
* * *
37567529 GATTGAAGCCACAACTGTAAATCTTACTTTCCTGGCGGTGTAGTGGAACAGATTAAAGCTACGAC
1 GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCTACGAC
* * * * * *
37567594 GGTGAATATTG-TTTCCTCAACATTGCAGTTAAACA
66 GGCGAAT-CTGATTTCCCCGACATTGCAATTAAAAA
37567629 GATTGAA
1 GATTGAA
37567636 AATGACGAAT
Statistics
Matches: 177, Mismatches: 29, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
100 175 0.99
101 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (100 bp):
GATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTAAAGCTACGAC
GGCGAATCTGATTTCCCCGACATTGCAATTAAAAA
Found at i:37567754 original size:45 final size:45
Alignment explanation
Indices: 37567643--37567809 Score: 176
Period size: 45 Copynumber: 3.7 Consensus size: 45
37567633 GAAAATGACG
* * * * * *
37567643 AATCTTATCTCCCTGAAGATGCAGCGGAGCAGATTGAGGCATA--T
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG-ATAGCA
* *
37567687 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTGAAGATAGCA
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
* * * * * *
37567732 AGTCTTATCTCCTTGAGGTTGCAGCGGAGTAGACTGAAGATAGCA
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
*
37567777 AATCCTATCTCCCTGAAGTTGCAGTAGAGCAGA
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGA
37567810 TCAAAATGAT
Statistics
Matches: 100, Mismatches: 21, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
43 3 0.03
44 34 0.34
45 63 0.63
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (45 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCA
Found at i:37569640 original size:6 final size:6
Alignment explanation
Indices: 37569615--37569651 Score: 56
Period size: 6 Copynumber: 5.8 Consensus size: 6
37569605 CCAAACACAC
37569615 CAGTATA CAGTAA TCAGTAA CAGTAA CAGTAA CAGTA
1 CAGTA-A CAGTAA -CAGTAA CAGTAA CAGTAA CAGTA
37569652 TTCAACACAC
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
6 18 0.62
7 11 0.38
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (6 bp):
CAGTAA
Found at i:37569682 original size:45 final size:45
Alignment explanation
Indices: 37569626--37569780 Score: 231
Period size: 45 Copynumber: 3.4 Consensus size: 45
37569616 AGTATACAGT
*
37569626 AATCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCTG
1 AATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
* * * * *
37569671 AACCTGTAACAGTAACGGTAACTGTATTCGACACACAAAGTGCCG
1 AATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
*
37569716 AGTCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTG-TCG
1 AATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCT-G
37569761 AATCAGTAACAGTAACAGTA
1 AATCAGTAACAGTAACAGTA
37569781 GTCGGCACAT
Statistics
Matches: 96, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 96 1.00
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (45 bp):
AATCAGTAACAGTAACAGTAACAGTATTCGACACACAAAGTGCTG
Found at i:37569723 original size:39 final size:39
Alignment explanation
Indices: 37569635--37569807 Score: 134
Period size: 45 Copynumber: 4.2 Consensus size: 39
37569625 TAATCAGTAA
* *
37569635 CAGTAACAGTAACAGTATTCAACACACAAAGTGCTGAACCTGT
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCCG-A---GT
* *
37569678 AACAGTAACGGTAACTGTATTCGACACACAAAGTGCCGAGTCAGT
1 --CAGTAACAGTAACAGTATTCGACACACAAAGTGCC--G--AGT
* *
37569723 AACAGTAACAGTAACAGTATTCGACACACAAAGTGTCGAAT
1 --CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAGT
* * *
37569764 CAGTAACAGTAACAGTAGTCGGCACA-TAAGTGCCTGA-T
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCC-GAGT
37569802 CAGTAA
1 CAGTAA
37569808 GCCGGCAAAT
Statistics
Matches: 111, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
38 13 0.12
39 26 0.23
41 2 0.02
43 1 0.01
45 67 0.60
47 1 0.01
48 1 0.01
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (39 bp):
CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAGT
Found at i:37570068 original size:39 final size:40
Alignment explanation
Indices: 37569984--37570068 Score: 102
Period size: 40 Copynumber: 2.1 Consensus size: 40
37569974 TTCTTTACTT
* * * *
37569984 CAGTAATTTCACAATTCAATGCATTATACATAACAATATT
1 CAGTATTTTCACAATTCAATGCATAATACAAAACAATATC
*
37570024 CAGTATTTTCACAATTCACT-CAGTAAT-CAAAACAATATC
1 CAGTATTTTCACAATTCAATGCA-TAATACAAAACAATATC
37570063 CAGTAT
1 CAGTAT
37570069 CCCATAATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
39 18 0.46
40 21 0.54
ACGTcount: A:0.41, C:0.20, G:0.06, T:0.33
Consensus pattern (40 bp):
CAGTATTTTCACAATTCAATGCATAATACAAAACAATATC
Found at i:37571175 original size:3 final size:3
Alignment explanation
Indices: 37571167--37571214 Score: 55
Period size: 3 Copynumber: 16.3 Consensus size: 3
37571157 GATTGTATCT
* *
37571167 TTA TTA TTA -TA TTA TTTA TTA TTT TTA TCA TTA TTA TTA TTA TT-
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37571211 TTA T
1 TTA T
37571215 ACATATACAC
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
2 4 0.11
3 31 0.82
4 3 0.08
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:37571258 original size:23 final size:25
Alignment explanation
Indices: 37571231--37571278 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
37571221 ACACACGCAT
*
37571231 TTTTTTAT-AATATATATGCATATA
1 TTTTTTATAAATACATATGCATATA
*
37571255 TTTTTTATAAATACATGTGCATAT
1 TTTTTTATAAATACATATGCATAT
37571279 TATATATATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.52
Consensus pattern (25 bp):
TTTTTTATAAATACATATGCATATA
Found at i:37571352 original size:18 final size:17
Alignment explanation
Indices: 37571315--37571353 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
37571305 TTCTCATAGT
* *
37571315 TTTTATATACATTTATA
1 TTTTATATACATATACA
37571332 TTTTATAATACATATACA
1 TTTTAT-ATACATATACA
37571350 TTTT
1 TTTT
37571354 CCTTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 6 0.32
18 13 0.68
ACGTcount: A:0.36, C:0.08, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTATATACATATACA
Found at i:37582961 original size:30 final size:30
Alignment explanation
Indices: 37582927--37582987 Score: 79
Period size: 31 Copynumber: 2.0 Consensus size: 30
37582917 CTTTAAAGGG
* *
37582927 TTAATA-TATATTTGGTATCTAAATTTAACT
1 TTAATATTA-ATTTGGTACCTAAATTAAACT
37582957 TTAATATTCAATTTGGTACCTAAATTAAACT
1 TTAATATT-AATTTGGTACCTAAATTAAACT
37582988 GCATCATATA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
30 6 0.22
31 20 0.74
32 1 0.04
ACGTcount: A:0.38, C:0.10, G:0.07, T:0.46
Consensus pattern (30 bp):
TTAATATTAATTTGGTACCTAAATTAAACT
Found at i:37603311 original size:19 final size:19
Alignment explanation
Indices: 37603252--37603313 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
37603242 AAAATTAGAA
*
37603252 AAAAAT-TATAAAAATCATT
1 AAAAATATAAAAAAATCA-T
**
37603271 AAAAATATAAAAAAATTGT
1 AAAAATATAAAAAAATCAT
* * *
37603290 AAAATTTTACAAAAATCAT
1 AAAAATATAAAAAAATCAT
37603309 AAAAA
1 AAAAA
37603314 ATGCTCTTTA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
19 25 0.76
20 8 0.24
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.27
Consensus pattern (19 bp):
AAAAATATAAAAAAATCAT
Found at i:37603551 original size:29 final size:29
Alignment explanation
Indices: 37603519--37603620 Score: 89
Period size: 29 Copynumber: 3.4 Consensus size: 29
37603509 CTTTATATTT
*
37603519 TTTTATAATTTTCTTACGA-CTTTATAAAA
1 TTTTATAATTTT-TTACGATATTTATAAAA
* * * * *
37603548 TTTTGTAATTTTTTTCTATATTTCTACATA
1 TTTTATAATTTTTTACGATATTTATA-AAA
* *
37603578 TTTTATAATTTTTTTATGATTTTTATAAAA
1 TTTTATAA-TTTTTTACGATATTTATAAAA
*
37603608 TTTTACAATTTTT
1 TTTTATAATTTTT
37603621 CTATAAATTT
Statistics
Matches: 56, Mismatches: 14, Indels: 6
0.74 0.18 0.08
Matches are distributed among these distances:
28 4 0.07
29 21 0.38
30 18 0.32
31 13 0.23
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (29 bp):
TTTTATAATTTTTTACGATATTTATAAAA
Found at i:37603611 original size:30 final size:30
Alignment explanation
Indices: 37603519--37603620 Score: 100
Period size: 30 Copynumber: 3.4 Consensus size: 30
37603509 CTTTATATTT
* * *
37603519 TTTTATAATTTTCTTACGA-CTTTATAAAA
1 TTTTATAATTTTTTTATGATATTTATAAAA
* * * *
37603548 TTTTGTAATTTTTTTCT-ATATTTCTACATA
1 TTTTATAATTTTTTTATGATATTTATA-AAA
*
37603578 TTTTATAATTTTTTTATGATTTTTATAAAA
1 TTTTATAATTTTTTTATGATATTTATAAAA
*
37603608 TTTTACAATTTTT
1 TTTTATAATTTTT
37603621 CTATAAATTT
Statistics
Matches: 57, Mismatches: 13, Indels: 5
0.76 0.17 0.07
Matches are distributed among these distances:
28 1 0.02
29 18 0.32
30 31 0.54
31 7 0.12
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (30 bp):
TTTTATAATTTTTTTATGATATTTATAAAA
Found at i:37603625 original size:21 final size:21
Alignment explanation
Indices: 37603597--37603641 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
37603587 TTTTTTATGA
37603597 TTTTTATAAA-ATTTTACAAT
1 TTTTTATAAATATTTTACAAT
* *
37603617 TTTTCTATAAATTTTTTACTAT
1 TTTT-TATAAATATTTTACAAT
37603639 TTT
1 TTT
37603642 CATATATATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 6 0.29
22 11 0.52
ACGTcount: A:0.31, C:0.07, G:0.00, T:0.62
Consensus pattern (21 bp):
TTTTTATAAATATTTTACAAT
Found at i:37603640 original size:22 final size:22
Alignment explanation
Indices: 37603608--37603654 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
37603598 TTTTATAAAA
37603608 TTTTACAATTTTTC-TATAAATT
1 TTTTACAA-TTTTCATATAAATT
* *
37603630 TTTTACTATTTTCATATATATT
1 TTTTACAATTTTCATATAAATT
37603652 TTT
1 TTT
37603655 AGTTTTTAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.28, C:0.09, G:0.00, T:0.64
Consensus pattern (22 bp):
TTTTACAATTTTCATATAAATT
Found at i:37603640 original size:60 final size:59
Alignment explanation
Indices: 37603519--37603662 Score: 141
Period size: 60 Copynumber: 2.4 Consensus size: 59
37603509 CTTTATATTT
* * ** * * *
37603519 TTTTATAATTTTCTTACGA-CTTTATAAAATTTTGTAATTTTTTTCTATATTTCTACATA
1 TTTTATAATTTTTTTA-GATTTTTATAAAATTTTACAATTTTTCTATAAATTTCTACATA
*
37603578 TTTTATAATTTTTTTATGATTTTTATAAAATTTTACAATTTTTCTATAAATTTTTTAC-TA
1 TTTTATAATTTTTTTA-GATTTTTATAAAATTTTACAATTTTTCTATAAA-TTTCTACATA
*
37603638 TTTTCATATATATTTTTAG-TTTTTA
1 TTTT-ATA-ATTTTTTTAGATTTTTA
37603663 ATATTTTTTA
Statistics
Matches: 71, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
59 17 0.24
60 36 0.51
61 10 0.14
62 8 0.11
ACGTcount: A:0.29, C:0.07, G:0.03, T:0.61
Consensus pattern (59 bp):
TTTTATAATTTTTTTAGATTTTTATAAAATTTTACAATTTTTCTATAAATTTCTACATA
Found at i:37603641 original size:30 final size:30
Alignment explanation
Indices: 37603558--37603641 Score: 75
Period size: 30 Copynumber: 2.9 Consensus size: 30
37603548 TTTTGTAATT
* * *
37603558 TTTTTCTAT-ATTTCTA-CATATTTTATAA
1 TTTTTCTATAATTTTTATAATATTTTACAA
* * *
37603586 TTTTTTTATGATTTTTATAAAATTTTACAA
1 TTTTTCTATAATTTTTATAATATTTTACAA
*
37603616 TTTTTCTATAAATTTTT-TACTATTTT
1 TTTTTCTAT-AATTTTTATAATATTTT
37603642 CATATATATT
Statistics
Matches: 44, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
28 8 0.18
29 6 0.14
30 24 0.55
31 6 0.14
ACGTcount: A:0.29, C:0.07, G:0.01, T:0.63
Consensus pattern (30 bp):
TTTTTCTATAATTTTTATAATATTTTACAA
Found at i:37608541 original size:31 final size:30
Alignment explanation
Indices: 37608500--37608562 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 30
37608490 TATTTAATAA
37608500 TTTATATTTTTATAA-AATTTTATAATATATT
1 TTTATATTTTTATAATAATTTT-T-ATATATT
*
37608531 TTTATCTTTTTATAATAATTTTTATATATT
1 TTTATATTTTTATAATAATTTTTATATATT
37608561 TT
1 TT
37608563 GAAGTTTTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 9 0.30
31 15 0.50
32 6 0.20
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (30 bp):
TTTATATTTTTATAATAATTTTTATATATT
Found at i:37608551 original size:20 final size:21
Alignment explanation
Indices: 37608517--37608555 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
37608507 TTTTATAAAA
37608517 TTTTATAATATATTTTTATCT
1 TTTTATAATATATTTTTATCT
37608538 TTTTATAATA-ATTTTTAT
1 TTTTATAATATATTTTTAT
37608556 ATATTTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATAATATATTTTTATCT
Found at i:37608571 original size:30 final size:31
Alignment explanation
Indices: 37608506--37608572 Score: 84
Period size: 30 Copynumber: 2.2 Consensus size: 31
37608496 ATAATTTATA
* *
37608506 TTTTTATAAAATTTTATAATATATTTTTATC
1 TTTTTATAAAATTTTATAATATATTTTGAAC
*
37608537 TTTTTATAATAATTTT-T-ATATATTTTGAAG
1 TTTTTATAA-AATTTTATAATATATTTTGAAC
37608567 TTTTTA
1 TTTTTA
37608573 AAATTATAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
30 16 0.50
31 10 0.31
32 6 0.19
ACGTcount: A:0.33, C:0.01, G:0.03, T:0.63
Consensus pattern (31 bp):
TTTTTATAAAATTTTATAATATATTTTGAAC
Found at i:37610451 original size:14 final size:14
Alignment explanation
Indices: 37610434--37610464 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
37610424 TTAAATTATG
*
37610434 AAAATAAAATCTCT
1 AAAACAAAATCTCT
37610448 AAAACAAAATCTCT
1 AAAACAAAATCTCT
37610462 AAA
1 AAA
37610465 CTAAGTATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.61, C:0.16, G:0.00, T:0.23
Consensus pattern (14 bp):
AAAACAAAATCTCT
Found at i:37611565 original size:22 final size:22
Alignment explanation
Indices: 37611532--37611592 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
37611522 GCCCGACCCG
* *
37611532 TTTTTAATTAAAATTAAAATTAT
1 TTTTTAA-TAAAATTAAAACTAA
37611555 TTTTTAATAAAATTAAAACTAA
1 TTTTTAATAAAATTAAAACTAA
* *
37611577 TTGTTATTAAAATTAA
1 TTTTTAATAAAATTAA
37611593 TTGTTAGTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 27 0.79
23 7 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.48
Consensus pattern (22 bp):
TTTTTAATAAAATTAAAACTAA
Found at i:37611605 original size:16 final size:16
Alignment explanation
Indices: 37611568--37611607 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
37611558 TTAATAAAAT
* *
37611568 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
37611584 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
37611600 TAAAATTA
1 TAAAATTA
37611608 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:37611666 original size:66 final size:59
Alignment explanation
Indices: 37611610--37611729 Score: 179
Period size: 59 Copynumber: 2.1 Consensus size: 59
37611600 TAAAATTATC
* * * * *
37611610 AAATTAT-TAATTGTTAATTGTATTAATTGTTGTAATAAAATCTAACATTTGATTAGTA
1 AAATTATCAAATTATTAATAGTATTAATTGTTGTAACAAAATCTAACATTTAATTAGTA
*
37611668 AATTTATCAAATTATTAATAGTATTAATTGTTGTAACAAAATCTAACATTTAATTAGTA
1 AAATTATCAAATTATTAATAGTATTAATTGTTGTAACAAAATCTAACATTTAATTAGTA
37611727 AAA
1 AAA
37611730 CAAACTTGAT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 6 0.11
59 48 0.89
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.43
Consensus pattern (59 bp):
AAATTATCAAATTATTAATAGTATTAATTGTTGTAACAAAATCTAACATTTAATTAGTA
Found at i:37611837 original size:25 final size:26
Alignment explanation
Indices: 37611798--37611847 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
37611788 AAATAAACTT
37611798 AAAATAAAAAAATA-TT-ATATTTTA
1 AAAATAAAAAAATATTTAATATTTTA
37611822 AAAATAAAAAAAATATTTAATATTTT
1 AAAAT-AAAAAAATATTTAATATTTT
37611848 TCGGGCTGGG
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.22
25 9 0.39
26 2 0.09
27 7 0.30
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (26 bp):
AAAATAAAAAAATATTTAATATTTTA
Found at i:37623834 original size:6 final size:6
Alignment explanation
Indices: 37623823--37623848 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
37623813 TTTCAGGCTA
37623823 TCACTT TCACTT TCACTT TCACTT TC
1 TCACTT TCACTT TCACTT TCACTT TC
37623849 TGTTCAGTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.35, G:0.00, T:0.50
Consensus pattern (6 bp):
TCACTT
Found at i:37627557 original size:12 final size:12
Alignment explanation
Indices: 37627534--37627584 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
37627524 TTTAATTCCC
*
37627534 ACTAATAATAAT
1 ACTAATATTAAT
* *
37627546 AATAATACTAATT
1 ACTAATATTAA-T
37627559 A-TAATATTAAT
1 ACTAATATTAAT
37627570 ACTAATATTAAT
1 ACTAATATTAAT
37627582 ACT
1 ACT
37627585 TACCTCACAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
11 2 0.06
12 30 0.88
13 2 0.06
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (12 bp):
ACTAATATTAAT
Found at i:37627557 original size:18 final size:18
Alignment explanation
Indices: 37627534--37627582 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
37627524 TTTAATTCCC
37627534 ACTAATAATAATAATAAT
1 ACTAATAATAATAATAAT
* *
37627552 ACTAATTATAATATTAAT
1 ACTAATAATAATAATAAT
*
37627570 ACTAATATTAATA
1 ACTAATAATAATA
37627583 CTTACCTCAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.55, C:0.06, G:0.00, T:0.39
Consensus pattern (18 bp):
ACTAATAATAATAATAAT
Found at i:37628518 original size:14 final size:17
Alignment explanation
Indices: 37628499--37628536 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 17
37628489 ATTTATTTCT
37628499 TAATATAA-T-ATTT-A
1 TAATATAATTAATTTAA
37628513 TAATATAATTAATTTAA
1 TAATATAATTAATTTAA
37628530 TAATATA
1 TAATATA
37628537 CTTTATATTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 8 0.38
15 1 0.05
16 4 0.19
17 8 0.38
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
TAATATAATTAATTTAA
Found at i:37637678 original size:40 final size:40
Alignment explanation
Indices: 37637602--37637677 Score: 118
Period size: 40 Copynumber: 1.9 Consensus size: 40
37637592 GTCCAGCAAT
37637602 TATTATTTTAAAATTTTTTAAAAAATTTCAATTTTTTACA
1 TATTATTTTAAAATTTTTTAAAAAATTTCAATTTTTTACA
* * *
37637642 TATTTTTTTATAATTTTTT-AAAAATTTTAATTTTTT
1 TATTATTTTAAAATTTTTTAAAAAATTTCAATTTTTT
37637678 TTAAAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
39 16 0.48
40 17 0.52
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.62
Consensus pattern (40 bp):
TATTATTTTAAAATTTTTTAAAAAATTTCAATTTTTTACA
Found at i:37647091 original size:18 final size:19
Alignment explanation
Indices: 37647054--37647091 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
37647044 TTTTAGAAAA
* *
37647054 TTTTTAAAATTTTAACTTT
1 TTTTTAAAATTATAAATTT
37647073 TTTTTAAAA-TATAAATTT
1 TTTTTAAAATTATAAATTT
37647091 T
1 T
37647092 GAATTTTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTTTAAAATTATAAATTT
Found at i:37647098 original size:25 final size:24
Alignment explanation
Indices: 37647060--37647125 Score: 68
Period size: 23 Copynumber: 2.8 Consensus size: 24
37647050 AAAATTTTTA
37647060 AAATTTT-AACTTTTTTTTAAAATAT
1 AAATTTTGAA-TTTTTTTTAAAA-AT
37647085 AAATTTTGAA--TTTTTTAAAAAT
1 AAATTTTGAATTTTTTTTAAAAAT
* *
37647107 -TATTTTGAATTATTTTTAA
1 AAATTTTGAATTTTTTTTAA
37647126 TTTTTATTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
21 8 0.22
22 2 0.06
23 17 0.47
25 7 0.19
26 2 0.06
ACGTcount: A:0.39, C:0.02, G:0.03, T:0.56
Consensus pattern (24 bp):
AAATTTTGAATTTTTTTTAAAAAT
Found at i:37647125 original size:23 final size:23
Alignment explanation
Indices: 37647072--37647122 Score: 70
Period size: 21 Copynumber: 2.3 Consensus size: 23
37647062 ATTTTAACTT
37647072 TTTTTTAAAATATAAATTTTGAA
1 TTTTTTAAAATATAAATTTTGAA
*
37647095 TTTTTTAAAA-AT-TATTTTGAA
1 TTTTTTAAAATATAAATTTTGAA
37647116 TTATTTT
1 TT-TTTT
37647123 TAATTTTTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
21 10 0.38
22 6 0.23
23 10 0.38
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (23 bp):
TTTTTTAAAATATAAATTTTGAA
Found at i:37651764 original size:20 final size:21
Alignment explanation
Indices: 37651718--37651764 Score: 51
Period size: 20 Copynumber: 2.3 Consensus size: 21
37651708 AGTATAAATC
*
37651718 AGTTATATAATTAACATATGA
1 AGTTATATAATTAACAAATGA
* * *
37651739 AATTAT-TAATTAAGAAATGT
1 AGTTATATAATTAACAAATGA
37651759 AGTTAT
1 AGTTAT
37651765 GTGTTTAGAT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
20 16 0.76
21 5 0.24
ACGTcount: A:0.47, C:0.02, G:0.11, T:0.40
Consensus pattern (21 bp):
AGTTATATAATTAACAAATGA
Found at i:37655867 original size:13 final size:15
Alignment explanation
Indices: 37655848--37655880 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
37655838 AACTAAAATT
37655848 CTAAAAATA-AAAAA
1 CTAAAAATATAAAAA
37655862 -TAAAAATATAAAAA
1 CTAAAAATATAAAAA
37655876 CTAAA
1 CTAAA
37655881 TTCTATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.47
14 5 0.29
15 4 0.24
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (15 bp):
CTAAAAATATAAAAA
Found at i:37655875 original size:22 final size:23
Alignment explanation
Indices: 37655828--37655880 Score: 65
Period size: 21 Copynumber: 2.3 Consensus size: 23
37655818 TAAAATTTGT
* *
37655828 AAAATAAAAGAACTAAAATTCTA
1 AAAATAAAAGAACTAAAAATATA
37655851 AAAATAAAA-AA-TAAAAATATA
1 AAAATAAAAGAACTAAAAATATA
37655872 AAAACTAAA
1 AAAA-TAAA
37655881 TTCTATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 12 0.44
22 6 0.22
23 9 0.33
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.19
Consensus pattern (23 bp):
AAAATAAAAGAACTAAAAATATA
Found at i:37656368 original size:17 final size:16
Alignment explanation
Indices: 37656346--37656404 Score: 57
Period size: 17 Copynumber: 3.6 Consensus size: 16
37656336 ATTATACTTC
37656346 ATTTTTCTTTTTCTTTT
1 ATTTTT-TTTTTCTTTT
*
37656363 ATTTTTTATTTTCTTTC
1 ATTTTTT-TTTTCTTTT
***
37656380 A-TTTTCGCTTCTTTT
1 ATTTTTTTTTTCTTTT
37656395 ATTTTTTTTT
1 ATTTTTTTTT
37656405 CTGGGTCTTC
Statistics
Matches: 32, Mismatches: 8, Indels: 5
0.71 0.18 0.11
Matches are distributed among these distances:
15 7 0.22
16 10 0.31
17 15 0.47
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (16 bp):
ATTTTTTTTTTCTTTT
Found at i:37661508 original size:16 final size:18
Alignment explanation
Indices: 37661475--37661513 Score: 55
Period size: 16 Copynumber: 2.3 Consensus size: 18
37661465 TAAAATATTG
37661475 AAAAATTATAAGAATTAA
1 AAAAATTATAAGAATTAA
*
37661493 AAAAATT-TAA-ATTTAA
1 AAAAATTATAAGAATTAA
37661509 AAAAA
1 AAAAA
37661514 AACTAAAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 10 0.50
17 3 0.15
18 7 0.35
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (18 bp):
AAAAATTATAAGAATTAA
Found at i:37661871 original size:21 final size:21
Alignment explanation
Indices: 37661845--37661901 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 21
37661835 CCTTAAAACG
37661845 AGATGTCTCGATACATCCCTT
1 AGATGTCTCGATACATCCCTT
* * *
37661866 AGATGT-TCAATATATCCTTT
1 AGATGTCTCGATACATCCCTT
*
37661886 AGTTGTGC-CGATACAT
1 AGATGT-CTCGATACAT
37661902 ATTTAAATGT
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
20 16 0.57
21 12 0.43
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (21 bp):
AGATGTCTCGATACATCCCTT
Found at i:37662740 original size:22 final size:23
Alignment explanation
Indices: 37662702--37662747 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
37662692 ATTCATAAAA
*
37662702 ATATATGATGATTTTTT-TAATT
1 ATATATGACGATTTTTTATAATT
37662724 ATATATGACG-TTATTTTATAATT
1 ATATATGACGATT-TTTTATAATT
37662747 A
1 A
37662748 AATAAATCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 2 0.10
22 13 0.62
23 6 0.29
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54
Consensus pattern (23 bp):
ATATATGACGATTTTTTATAATT
Found at i:37663101 original size:46 final size:46
Alignment explanation
Indices: 37663034--37663128 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
37663024 AAGAATACCC
*
37663034 TTTGTGGGATCAATGCTTGTGATATTATGTATAGTTTTTATGCATG
1 TTTGTGGGATCAATGCTTGTGATATTAGGTATAGTTTTTATGCATG
37663080 TTTGTGGGATCAATGCTTGTGATATTAGGTATAGTTTTTATGCATG
1 TTTGTGGGATCAATGCTTGTGATATTAGGTATAGTTTTTATGCATG
37663126 TTT
1 TTT
37663129 ATTATATCTC
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.21, C:0.06, G:0.24, T:0.48
Consensus pattern (46 bp):
TTTGTGGGATCAATGCTTGTGATATTAGGTATAGTTTTTATGCATG
Found at i:37668328 original size:43 final size:42
Alignment explanation
Indices: 37668281--37668379 Score: 119
Period size: 42 Copynumber: 2.3 Consensus size: 42
37668271 TCCTAGATGT
*
37668281 GGTCTTACATGTAATCAAATATCGATG-CCATTGTCCCAGACAG
1 GGTCTTACACGTAATCAAATA-CGATGTCCA-TGTCCCAGACAG
* ** * *
37668324 GGTCTTACACGAAATCGTATACGATGTCGATGTCCCAGACAT
1 GGTCTTACACGTAATCAAATACGATGTCCATGTCCCAGACAG
37668366 GGTCTTACACGTAA
1 GGTCTTACACGTAA
37668380 ATCTCAAATC
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 29 0.60
43 19 0.40
ACGTcount: A:0.29, C:0.23, G:0.20, T:0.27
Consensus pattern (42 bp):
GGTCTTACACGTAATCAAATACGATGTCCATGTCCCAGACAG
Found at i:37669569 original size:13 final size:13
Alignment explanation
Indices: 37669551--37669575 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
37669541 TTAAACGGTA
37669551 AAATTTTCACACG
1 AAATTTTCACACG
37669564 AAATTTTCACAC
1 AAATTTTCACAC
37669576 ATAAATTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:37675834 original size:40 final size:39
Alignment explanation
Indices: 37675770--37675981 Score: 264
Period size: 40 Copynumber: 5.3 Consensus size: 39
37675760 TCTTCGGAAT
* *
37675770 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAT-ATCACTAGCACAAATGCCTTCGGGTC
*
37675809 TTAGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* *
37675849 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
* * * *
37675889 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATATATC-ACTAGCACAAATGCCTTCGGGTC
* * *
37675929 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGAC
1 TTAGCCCGGAT-ATATCACTAGCACAAATGCCTTCGGGTC
37675969 TTAGCCCGGATAT
1 TTAGCCCGGATAT
37675982 CATTCAAATG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
39 10 0.07
40 131 0.89
41 7 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (39 bp):
TTAGCCCGGATATATCACTAGCACAAATGCCTTCGGGTC
Found at i:37675897 original size:80 final size:80
Alignment explanation
Indices: 37675770--37675981 Score: 345
Period size: 80 Copynumber: 2.7 Consensus size: 80
37675760 TCTTCGGAAT
* * * * *
37675770 TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
37675834 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* *
37675849 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCAC
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
37675914 AAATGCCTTCGGGTC
66 AAATGCCTTCGGGTC
*
37675929 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGGATAT
1 TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATAT
37675982 CATTCAAATG
Statistics
Matches: 122, Mismatches: 10, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
79 4 0.03
80 118 0.97
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
TTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
AAATGCCTTCGGGTC
Found at i:37679670 original size:20 final size:21
Alignment explanation
Indices: 37679645--37679685 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37679635 ATTGTGAGAG
37679645 TTAAAA-ATAAAACGAAATAA
1 TTAAAACATAAAACGAAATAA
* *
37679665 TTAAAACATGAAACGAGATAA
1 TTAAAACATAAAACGAAATAA
37679686 AATTAACTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.63, C:0.07, G:0.10, T:0.20
Consensus pattern (21 bp):
TTAAAACATAAAACGAAATAA
Found at i:37681943 original size:224 final size:225
Alignment explanation
Indices: 37681553--37681992 Score: 846
Period size: 224 Copynumber: 2.0 Consensus size: 225
37681543 TAATTAGATC
* *
37681553 ATTCAACAAAACAAGAAATTTGAATCCTATGTTTTTCGGATTTGGGTGAGTTTGTGTTCAGTTTT
1 ATTCAACAAAACAAGAAATTTGAATCCTATGTTATTCGGATTTGGGTGAGTTTGAGTTCAGTTTT
*
37681618 TCATGTATTTGGTGGGTTCTTGGGGTCCTATCCCTATATATATGTCGAAATGTGTTGTATACAGG
66 TCATGTATTTGGTGGGTTCTTGGGGTCCTATCCCTATATATATGTCGAAATGTGTTGAATACAGG
37681683 TATTTCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCA-C
131 TATTTCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCATC
37681747 CATATTGGTAATAATAATGAATCCTATGTT
196 CATATTGGTAATAATAATGAATCCTATGTT
37681777 ATTCAACAAAACAAGAAATTTGAATCCTATGTTATTCGGATTTGGGTGAGTTTGAGTTCAGTTTT
1 ATTCAACAAAACAAGAAATTTGAATCCTATGTTATTCGGATTTGGGTGAGTTTGAGTTCAGTTTT
37681842 TCATGTATTTGGTGGGTTCTTGGGGTCCTATCCCTATATATATGTCGAAATGTGTTGAATACAGG
66 TCATGTATTTGGTGGGTTCTTGGGGTCCTATCCCTATATATATGTCGAAATGTGTTGAATACAGG
37681907 TATTTCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCATC
131 TATTTCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCATC
37681972 CATATTGGTAATAATAATGAA
196 CATATTGGTAATAATAATGAA
37681993 ATTACGATGC
Statistics
Matches: 212, Mismatches: 3, Indels: 1
0.98 0.01 0.00
Matches are distributed among these distances:
224 190 0.90
225 22 0.10
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.37
Consensus pattern (225 bp):
ATTCAACAAAACAAGAAATTTGAATCCTATGTTATTCGGATTTGGGTGAGTTTGAGTTCAGTTTT
TCATGTATTTGGTGGGTTCTTGGGGTCCTATCCCTATATATATGTCGAAATGTGTTGAATACAGG
TATTTCAGTCAGAATGAACAGTTGAAGCAGCACAGTCTGAATTTTCTAGTAGTTTTAGCACCATC
CATATTGGTAATAATAATGAATCCTATGTT
Found at i:37685326 original size:26 final size:24
Alignment explanation
Indices: 37685289--37685342 Score: 56
Period size: 26 Copynumber: 2.2 Consensus size: 24
37685279 GAAAATAAAC
37685289 AAATTTGAATTTCAAAGCAAATTTGT
1 AAATTTGAATTTCAAAG--AATTTGT
* *
37685315 AAATTT-ATATTTTATAGAATTTGT
1 AAATTTGA-ATTTCAAAGAATTTGT
37685339 AAAT
1 AAAT
37685343 ATCCAACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
24 11 0.44
25 1 0.04
26 13 0.52
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.44
Consensus pattern (24 bp):
AAATTTGAATTTCAAAGAATTTGT
Found at i:37687603 original size:56 final size:56
Alignment explanation
Indices: 37687483--37687595 Score: 190
Period size: 56 Copynumber: 2.0 Consensus size: 56
37687473 GAAGAACCCC
* *
37687483 TATAATCAAGGATTGACTCAATCCTAAATAAAGAAATAAATAAAATATCATCAAAT
1 TATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAATAAAATATCATCAAAT
* *
37687539 TATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAATAAAATCTTATCAAAT
1 TATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAATAAAATATCATCAAAT
37687595 T
1 T
37687596 TGTATCAATC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.52, C:0.12, G:0.09, T:0.27
Consensus pattern (56 bp):
TATAATCAAGGATTGACTCAATCCTAAAGAAAGAAAGAAATAAAATATCATCAAAT
Found at i:37690516 original size:41 final size:41
Alignment explanation
Indices: 37690454--37690573 Score: 152
Period size: 41 Copynumber: 2.9 Consensus size: 41
37690444 CCGGATTTAT
* * * *
37690454 TGCCAGTGAAATAATTCAGACTTTAGGTCTAGCAGGCTTGA
1 TGCCAGTGAAATTATTCAGACTATAAGTCTAGCAGGCTTAA
* *
37690495 TGCCGGTGAAATTATTCAGACTATACGTCTAGCAGGCTTAA
1 TGCCAGTGAAATTATTCAGACTATAAGTCTAGCAGGCTTAA
**
37690536 TGCCAGTGATACGT-TTCAGACTATAAGTCTAGCAGGCT
1 TGCCAGTGA-AATTATTCAGACTATAAGTCTAGCAGGCT
37690574 AAAAGGCGGT
Statistics
Matches: 69, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
41 67 0.97
42 2 0.03
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.29
Consensus pattern (41 bp):
TGCCAGTGAAATTATTCAGACTATAAGTCTAGCAGGCTTAA
Found at i:37700017 original size:6 final size:7
Alignment explanation
Indices: 37700002--37700027 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37699992 AATAACCTAG
37700002 AAAATAA
1 AAAATAA
37700009 AAAATAA
1 AAAATAA
37700016 AAAATAA
1 AAAATAA
37700023 AAAAT
1 AAAAT
37700028 TTATTACATT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AAAATAA
Found at i:37700192 original size:16 final size:15
Alignment explanation
Indices: 37700167--37700197 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
37700157 ACTTTATTTT
37700167 TAAAATATTTTTTAA
1 TAAAATATTTTTTAA
37700182 TAAATATATTTTTTAA
1 TAAA-ATATTTTTTAA
37700198 AATTTATTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TAAAATATTTTTTAA
Found at i:37700200 original size:14 final size:14
Alignment explanation
Indices: 37700163--37700206 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
37700153 ATAGACTTTA
37700163 TTTTTAAAATAT-T
1 TTTTTAAAATATAT
*
37700176 TTTTAATAAATATAT
1 TTTTTA-AAATATAT
*
37700191 TTTTTAAAATTTAT
1 TTTTTAAAATATAT
37700205 TT
1 TT
37700207 AAAATTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
13 5 0.19
14 15 0.58
15 6 0.23
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (14 bp):
TTTTTAAAATATAT
Found at i:37702159 original size:76 final size:75
Alignment explanation
Indices: 37702074--37702224 Score: 257
Period size: 76 Copynumber: 2.0 Consensus size: 75
37702064 ATCATTGAAG
* *
37702074 CAATAAAAAAAACATGCAAGGTTTCGTGATTTCATCCAAATAAGTTTCACCCAAAACATTGCCCA
1 CAATAAAAAAAACATGCAAGATTTCATGATTTCATCCAAATAAGTTTCACCCAAAACATTGCCCA
37702139 TATCAAAAGA
66 TATCAAAAGA
* *
37702149 CAATAAAAAAAAACATGCAAGATTTCATGATTTCATCTAAATAAGTTTCATCCAAAACATTGCCC
1 CAAT-AAAAAAAACATGCAAGATTTCATGATTTCATCCAAATAAGTTTCACCCAAAACATTGCCC
37702214 ATATCAAAAGA
65 ATATCAAAAGA
37702225 GGGATATGCA
Statistics
Matches: 71, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
75 4 0.06
76 67 0.94
ACGTcount: A:0.46, C:0.20, G:0.09, T:0.25
Consensus pattern (75 bp):
CAATAAAAAAAACATGCAAGATTTCATGATTTCATCCAAATAAGTTTCACCCAAAACATTGCCCA
TATCAAAAGA
Found at i:37719953 original size:20 final size:19
Alignment explanation
Indices: 37719904--37719955 Score: 52
Period size: 20 Copynumber: 2.6 Consensus size: 19
37719894 TAACAGATGA
*
37719904 ATCGAAGTGCTAACAGAGGC
1 ATCGAAGTGC-AACAGAAGC
*
37719924 A-CGATTGTGCAATCAGAAGC
1 ATCGA-AGTGCAA-CAGAAGC
37719944 ATCGAAGTGCAA
1 ATCGAAGTGCAA
37719956 ACATAGACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
19 5 0.19
20 18 0.69
21 3 0.12
ACGTcount: A:0.37, C:0.19, G:0.27, T:0.17
Consensus pattern (19 bp):
ATCGAAGTGCAACAGAAGC
Found at i:37721769 original size:42 final size:43
Alignment explanation
Indices: 37721673--37721774 Score: 109
Period size: 42 Copynumber: 2.4 Consensus size: 43
37721663 TTGTGCTTGT
* * * *
37721673 GCCACAAGGGCGTGTGTCTAGGTCGTTTGAGCCACTGACTTGA
1 GCCACAAGGGCGTGTGTCCAGGTCGTGTAAGCCACTGAATTGA
* * *
37721716 GGCACACGGGCGTGTG-CCAGG-CTGTGTAAGTCACTGAATTGA
1 GCCACAAGGGCGTGTGTCCAGGTC-GTGTAAGCCACTGAATTGA
*
37721758 TCCACAAGGGCGTGTGT
1 GCCACAAGGGCGTGTGT
37721775 GAGGCCGTGT
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
41 1 0.02
42 32 0.68
43 14 0.30
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.24
Consensus pattern (43 bp):
GCCACAAGGGCGTGTGTCCAGGTCGTGTAAGCCACTGAATTGA
Found at i:37729475 original size:20 final size:20
Alignment explanation
Indices: 37729419--37729538 Score: 100
Period size: 20 Copynumber: 6.0 Consensus size: 20
37729409 AGATGCGTAA
* *
37729419 CAGATGCACCAAAGTGCTGAT
1 CAGAGGCACCAAAGTGC-AAT
* **
37729440 -AGAGGCACGATTGTGCAAT
1 CAGAGGCACCAAAGTGCAAT
*
37729459 CAGAGGCACCAAAGTGCAAA
1 CAGAGGCACCAAAGTGCAAT
* * *
37729479 CATAGACACCAAAGTGTAAT
1 CAGAGGCACCAAAGTGCAAT
* *
37729499 -AGAGGCACTAAAGTGCAAA
1 CAGAGGCACCAAAGTGCAAT
* *
37729518 CAGAGGCACCGAAGTTCAAT
1 CAGAGGCACCAAAGTGCAAT
37729538 C
1 C
37729539 CTGTACAAGC
Statistics
Matches: 75, Mismatches: 22, Indels: 5
0.74 0.22 0.05
Matches are distributed among these distances:
19 16 0.21
20 59 0.79
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.15
Consensus pattern (20 bp):
CAGAGGCACCAAAGTGCAAT
Found at i:37730679 original size:43 final size:43
Alignment explanation
Indices: 37730616--37730714 Score: 153
Period size: 43 Copynumber: 2.3 Consensus size: 43
37730606 GACATTGAAA
* *
37730616 AAACGCCGCTAAAGATCATGACCTTTAGCGGCACTTTTATAAC
1 AAACGCCGCTAAAAAACATGACCTTTAGCGGCACTTTTATAAC
* *
37730659 AAACGCCGCTAAAAAACATGACCTTTAGCGGCACTTTTTTCAC
1 AAACGCCGCTAAAAAACATGACCTTTAGCGGCACTTTTATAAC
*
37730702 AAACGCCACTAAA
1 AAACGCCGCTAAA
37730715 GAGCTTAACT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.35, C:0.27, G:0.14, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAAAACATGACCTTTAGCGGCACTTTTATAAC
Found at i:37730804 original size:42 final size:42
Alignment explanation
Indices: 37730720--37730837 Score: 114
Period size: 42 Copynumber: 2.8 Consensus size: 42
37730710 CTAAAGAGCT
* * * *
37730720 TAACTAAAAACGCCACTAAAAA-ATATGATCTTTAGCGGCGCTTT
1 TAAC-AAAAACGCCGCTAAAAACATA--ACCTTTAGCGACGCTTC
** * *
37730764 TGTCACAAACGCCGCTAAAGA-ATAAACCTTTAGCGACGCTTC
1 TAACAAAAACGCCGCTAAAAACAT-AACCTTTAGCGACGCTTC
37730806 TAACAAAAACGCCGCTAAAAACATAACCTTTA
1 TAACAAAAACGCCGCTAAAAACATAACCTTTA
37730838 AAAAAATTAT
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
42 39 0.65
43 18 0.30
44 3 0.05
ACGTcount: A:0.40, C:0.25, G:0.13, T:0.23
Consensus pattern (42 bp):
TAACAAAAACGCCGCTAAAAACATAACCTTTAGCGACGCTTC
Found at i:37733562 original size:8 final size:8
Alignment explanation
Indices: 37733549--37733573 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
37733539 GGAAAAAAAA
37733549 ATTTAACC
1 ATTTAACC
37733557 ATTTAACC
1 ATTTAACC
37733565 ATTTAACC
1 ATTTAACC
37733573 A
1 A
37733574 AGGGGATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.40, C:0.24, G:0.00, T:0.36
Consensus pattern (8 bp):
ATTTAACC
Found at i:37734019 original size:19 final size:19
Alignment explanation
Indices: 37733993--37734039 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
37733983 CTGAAACCAA
37733993 AATTTATAATAGGCATTCT
1 AATTTATAATAGGCATTCT
*
37734012 AGTTTATAATAGGCATTCT
1 AATTTATAATAGGCATTCT
37734031 AATTTATAA
1 AATTTATAA
37734040 CAGATTCCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (19 bp):
AATTTATAATAGGCATTCT
Found at i:37735623 original size:148 final size:150
Alignment explanation
Indices: 37735351--37735632 Score: 392
Period size: 148 Copynumber: 1.9 Consensus size: 150
37735341 GTAAATTTTG
* * *
37735351 TTTTGTGGCGTTTTTAAGAAAAAGGCCGCAAAAAAAATATTTCATTTGGAATAAAACGACACTGT
1 TTTTGCGGCATTTTTAAGAAAAACGCCGCAAAAAAAATATTTCATTTGGAATAAAACGACACTGT
* * * *
37735416 TTTGCTATGATAAAAATGTGTTATTTTTTTGAGGTAAAATTTTGTTTTGTGGCG-TTTTTTATAA
66 TTTGCTATGATAAAAAGGTGCTATTTTTTTAAAGTAAAATTTTGTTTTGTGGCGATTTTTTATAA
37735480 AAACGCCGCTATTGCTTACC
131 AAACGCCGCTATTGCTTACC
* * * *
37735500 TTTTGCGGCATTTTTCATAAAAACGCCGC-AAAAAATTATTTCATTTGGTATAAAACGACACTGT
1 TTTTGCGGCATTTTTAAGAAAAACGCCGCAAAAAAAATATTTCATTTGGAATAAAACGACACTGT
* *
37735564 TTTGCTATGTTAAAAGGGTGCTATTTTTTTTAAAGTAAAATTATT-TTTTGTGGC-ATTTTTTTA
66 TTTGCTATGATAAAAAGGTGCTA-TTTTTTTAAAGTAAAATT-TTGTTTTGTGGCGA-TTTTTTA
37735627 TAAAAA
128 TAAAAA
37735633 TGCAACGCCG
Statistics
Matches: 116, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
148 52 0.45
149 49 0.42
150 15 0.13
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (150 bp):
TTTTGCGGCATTTTTAAGAAAAACGCCGCAAAAAAAATATTTCATTTGGAATAAAACGACACTGT
TTTGCTATGATAAAAAGGTGCTATTTTTTTAAAGTAAAATTTTGTTTTGTGGCGATTTTTTATAA
AAACGCCGCTATTGCTTACC
Found at i:37735650 original size:115 final size:108
Alignment explanation
Indices: 37735500--37735801 Score: 469
Period size: 115 Copynumber: 2.7 Consensus size: 108
37735490 ATTGCTTACC
* * * *
37735500 TTTTGCGGCATTTTTCATAAAAACGCCGCAAAAAATTATTTCATTTGGTATAAAACGACACTGTT
1 TTTTGTGGCGTTTTTTATAAAAACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTT
*
37735565 TTGCTATGTTAAAAGGGTGCTATTTTTTTTAAAGTAAAATTATT
66 TTGCTATGCTAAAAGGGTGCTA-TTTTTTTAAAGTAAAATTATT
*
37735609 TTTTGTGGCATTTTTTTATAAAAATGCAACGCCGCAAAAAATTATTTCATTTGGAATAAAACGAC
1 TTTTGTGGC-GTTTTTTAT--AAA---AACGCCGCAAAAAATTATTTCATTTGGAATAAAACGAC
*
37735674 ATTGTTTTGCTATGCTAAAAGGGTGCTATTTTTTTAAAGTAAAATTATT
60 ACTGTTTTGCTATGCTAAAAGGGTGCTATTTTTTTAAAGTAAAATTATT
*
37735723 TTTTGTGGCGTTTTTTATAAAAACGCCGCAAAAAATTATTTCATTTGGAATAAAATGACACTGTT
1 TTTTGTGGCGTTTTTTATAAAAACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTT
37735788 TTGCTATGCTAAAA
66 TTGCTATGCTAAAA
37735802 ATCTTTTATT
Statistics
Matches: 178, Mismatches: 9, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
108 56 0.31
109 8 0.04
110 7 0.04
111 3 0.02
112 3 0.02
113 8 0.04
114 30 0.17
115 63 0.35
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.40
Consensus pattern (108 bp):
TTTTGTGGCGTTTTTTATAAAAACGCCGCAAAAAATTATTTCATTTGGAATAAAACGACACTGTT
TTGCTATGCTAAAAGGGTGCTATTTTTTTAAAGTAAAATTATT
Found at i:37736524 original size:35 final size:34
Alignment explanation
Indices: 37736431--37736532 Score: 100
Period size: 35 Copynumber: 2.9 Consensus size: 34
37736421 TAATTAATCT
* *
37736431 AAACCTTAAAAC-CTAACCC-AACCCCAAATCTCT
1 AAACCTTAAAACACTAACCCTAACCCCAAA-CCCC
* * *
37736464 AAACCATAAATCACTAACTCTTAACCCCAAACCCC
1 AAACCTTAAAACACTAAC-CCTAACCCCAAACCCC
*
37736499 AAACCTTAAACCACTAACCACTAACCCCTAAACC
1 AAACCTTAAAACACTAACC-CTAACCCC-AAACC
37736533 TTATTAATAT
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
33 10 0.18
34 6 0.11
35 26 0.46
36 14 0.25
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (34 bp):
AAACCTTAAAACACTAACCCTAACCCCAAACCCC
Done.