Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 13 of 199
Found at i:5484233 original size:24 final size:24
Alignment explanation
Indices: 5484201--5484250 Score: 91
Period size: 24 Copynumber: 2.1 Consensus size: 24
5484191 CGAATGTTGT
*
5484201 GACGCGATTAAGTGTAAGTAATTG
1 GACGAGATTAAGTGTAAGTAATTG
5484225 GACGAGATTAAGTGTAAGTAATTG
1 GACGAGATTAAGTGTAAGTAATTG
5484249 GA
1 GA
5484251 ATGATAGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.36, C:0.06, G:0.30, T:0.28
Consensus pattern (24 bp):
GACGAGATTAAGTGTAAGTAATTG
Found at i:5485903 original size:26 final size:26
Alignment explanation
Indices: 5485874--5485926 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
5485864 AGTGTGAAAA
* *
5485874 TTTTGAACTTGAATATTGTTTGTTTTT
1 TTTTGAA-GTGAATATTGTTTATTTTT
*
5485901 TTTTGGAGTGAATATTGTTTATTTTT
1 TTTTGAAGTGAATATTGTTTATTTTT
5485927 ACAACTGGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 17 0.74
27 6 0.26
ACGTcount: A:0.19, C:0.02, G:0.17, T:0.62
Consensus pattern (26 bp):
TTTTGAAGTGAATATTGTTTATTTTT
Found at i:5488703 original size:6 final size:6
Alignment explanation
Indices: 5488694--5488719 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
5488684 CCCGAGAAGG
5488694 AGAGGA AGAGGA AGAGGA AGAGGA AG
1 AGAGGA AGAGGA AGAGGA AGAGGA AG
5488720 GCTCCTCCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (6 bp):
AGAGGA
Found at i:5489463 original size:8 final size:8
Alignment explanation
Indices: 5489450--5489478 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
5489440 AGCAGCTAAT
5489450 AAAAATTA
1 AAAAATTA
5489458 AAAAATTA
1 AAAAATTA
5489466 AAAAATTA
1 AAAAATTA
5489474 AAAAA
1 AAAAA
5489479 CAACCGATAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (8 bp):
AAAAATTA
Found at i:5489716 original size:17 final size:17
Alignment explanation
Indices: 5489696--5489749 Score: 51
Period size: 17 Copynumber: 3.2 Consensus size: 17
5489686 TAATAAAATA
5489696 ATTATAATTATAATTAT
1 ATTATAATTATAATTAT
5489713 ATTAT-ATTAATAATT-T
1 ATTATAATT-ATAATTAT
*
5489729 GTTATGAATGT-TAATTAT
1 ATTAT-AAT-TATAATTAT
5489747 ATT
1 ATT
5489750 TTTAATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
16 8 0.27
17 16 0.53
18 5 0.17
19 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
ATTATAATTATAATTAT
Found at i:5490293 original size:13 final size:13
Alignment explanation
Indices: 5490275--5490303 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
5490265 GATAAAAAAC
5490275 TTTCAACAATTTA
1 TTTCAACAATTTA
5490288 TTTCAACAATTTA
1 TTTCAACAATTTA
5490301 TTT
1 TTT
5490304 AATTTATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.14, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTCAACAATTTA
Found at i:5490838 original size:84 final size:84
Alignment explanation
Indices: 5490750--5490923 Score: 339
Period size: 84 Copynumber: 2.1 Consensus size: 84
5490740 TTATCAGTGG
*
5490750 GCAATTTCTTTTAACAATTTATTAATTTATTTTAATATTTGAAATTTAAAAATTAAAATTTTAAT
1 GCAATGTCTTTTAACAATTTATTAATTTATTTTAATATTTGAAATTTAAAAATTAAAATTTTAAT
5490815 ATTAAAAAAAATAATTTCA
66 ATTAAAAAAAATAATTTCA
5490834 GCAATGTCTTTTAACAATTTATTAATTTATTTTAATATTTGAAATTTAAAAATTAAAATTTTAAT
1 GCAATGTCTTTTAACAATTTATTAATTTATTTTAATATTTGAAATTTAAAAATTAAAATTTTAAT
5490899 ATTAAAAAAAATAATTTCA
66 ATTAAAAAAAATAATTTCA
5490918 GCAATG
1 GCAATG
5490924 AGATAAACAA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 89 1.00
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (84 bp):
GCAATGTCTTTTAACAATTTATTAATTTATTTTAATATTTGAAATTTAAAAATTAAAATTTTAAT
ATTAAAAAAAATAATTTCA
Found at i:5496375 original size:21 final size:21
Alignment explanation
Indices: 5496334--5496375 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
5496324 AACCATCCAT
* * *
5496334 TAACAAAATTACAGGCTCAAA
1 TAACAAAAGTACAAGCCCAAA
5496355 TAACAAAAGTACAAGCCCAAA
1 TAACAAAAGTACAAGCCCAAA
5496376 ATACAAAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.21, G:0.10, T:0.14
Consensus pattern (21 bp):
TAACAAAAGTACAAGCCCAAA
Found at i:5498101 original size:33 final size:35
Alignment explanation
Indices: 5498029--5498105 Score: 88
Period size: 35 Copynumber: 2.3 Consensus size: 35
5498019 ATTGACGGAT
* *
5498029 AAGACCATGGTTGGACCATGACAATGTTTAAATGT
1 AAGACCATAGTTGGACCATGACAATGTTTAAATGA
* *
5498064 AAGACCATAGTTGGGCTATGAC-AT-TTT-AATGAA
1 AAGACCATAGTTGGACCATGACAATGTTTAAATG-A
5498097 AAGACCATA
1 AAGACCATA
5498106 ACTGGGTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
32 4 0.11
33 12 0.32
34 2 0.05
35 19 0.51
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (35 bp):
AAGACCATAGTTGGACCATGACAATGTTTAAATGA
Found at i:5499804 original size:3 final size:3
Alignment explanation
Indices: 5499796--5499828 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
5499786 GTGAGGTAAG
5499796 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
5499829 GAGTGGGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:5500242 original size:37 final size:39
Alignment explanation
Indices: 5500183--5500278 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
5500173 CGGATAGATT
* * * *
5500183 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
5500220 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
5500259 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
5500279 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:5501165 original size:164 final size:166
Alignment explanation
Indices: 5500969--5501303 Score: 545
Period size: 173 Copynumber: 2.0 Consensus size: 166
5500959 TCAATTTGCA
5500969 GGGTTTTATGTAAAAATAAGCAGAAATGCTGCCGAAATT-TTTATA-AAAAAAAATGAAGTCATT
1 GGGTTTTATGTAAAAATAAGCAGAAATGCTGCCGAAATTATTTATATAAAAAAAATGAAGTCATT
5501032 TGGTAAACAAATTAATAAATTTTATGAATTATTTTAATATA-T-TTA-TTATTTAAGAATTGTTG
66 TGGTAAACAAA-TAATAAATTTT-TGAATTATTTTAATATATTGTTATTTATTTAAGAATTGTTG
5501094 TAAATCGTTCGATACGTCCGGTAATGCTCGTAATTCTGG
129 TAAATCGTTCGATACGTCCGGTAATGC-CGTAATTCTGG
*
5501133 GGGTTTTATGTAAAAATAAGCAGAAATGCTGCCGAAATTGCGAAATTTTTATAAAAAAAATGAAG
1 GGGTTTTATGTAAAAATAAGCAGAAATGCTGCCGAAATT-----ATTTATATAAAAAAAATGAAG
5501198 TCATTTGGTAAACAAATAATAAATTTTTGAATTATTTTAATATATTGGTTATTTATTTAAGAATT
61 TCATTTGGTAAACAAATAATAAATTTTTGAATTATTTTAATATATT-GTTATTTATTTAAGAATT
5501263 GTTGTAAATCGTTCGATACGTCCGGTAATGCCGTAATTCTG
125 GTTGTAAATCGTTCGATACGTCCGGTAATGCCGTAATTCTG
5501304 TTCCGGCGAC
Statistics
Matches: 159, Mismatches: 1, Indels: 14
0.91 0.01 0.08
Matches are distributed among these distances:
164 39 0.25
169 17 0.11
170 17 0.11
171 29 0.18
172 13 0.08
173 44 0.28
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.38
Consensus pattern (166 bp):
GGGTTTTATGTAAAAATAAGCAGAAATGCTGCCGAAATTATTTATATAAAAAAAATGAAGTCATT
TGGTAAACAAATAATAAATTTTTGAATTATTTTAATATATTGTTATTTATTTAAGAATTGTTGTA
AATCGTTCGATACGTCCGGTAATGCCGTAATTCTGG
Found at i:5506300 original size:28 final size:29
Alignment explanation
Indices: 5506269--5506324 Score: 69
Period size: 28 Copynumber: 2.0 Consensus size: 29
5506259 TATTATTATT
*
5506269 TATATAAATATATAAATTA-ATTATAAAG
1 TATATAAATAAATAAATTACATTATAAAG
* * *
5506297 TATATTATTAAATTAATTACATTATAAA
1 TATATAAATAAATAAATTACATTATAAA
5506325 TATTATATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
28 15 0.65
29 8 0.35
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.43
Consensus pattern (29 bp):
TATATAAATAAATAAATTACATTATAAAG
Found at i:5507092 original size:3 final size:3
Alignment explanation
Indices: 5507084--5507116 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
5507074 GTGAGGTAAG
5507084 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
5507117 GAGTGGGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:5507527 original size:37 final size:39
Alignment explanation
Indices: 5507468--5507563 Score: 108
Period size: 39 Copynumber: 2.5 Consensus size: 39
5507458 CGGATAGATT
* * * *
5507468 CGATGAGGTACTGGGTACCAACT-TT-CTTCG-GCTTTGC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTAT-C
* *
5507505 CGATGAGACACTGGGTGTCAACTATTGCTTCGAACTATC
1 CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
5507544 CGATGAGGCACTGGGTGCCA
1 CGATGAGGCACTGGGTGCCA
5507564 TTCTGGTGTG
Statistics
Matches: 48, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 19 0.40
38 2 0.04
39 24 0.50
40 3 0.06
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.27
Consensus pattern (39 bp):
CGATGAGGCACTGGGTGCCAACTATTGCTTCGAACTATC
Found at i:5510541 original size:12 final size:12
Alignment explanation
Indices: 5510524--5510550 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
5510514 CGATTCCCGT
5510524 TTTTTATTTTCA
1 TTTTTATTTTCA
5510536 TTTTTATTTTCA
1 TTTTTATTTTCA
5510548 TTT
1 TTT
5510551 CGTTTTCTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.07, G:0.00, T:0.78
Consensus pattern (12 bp):
TTTTTATTTTCA
Found at i:5521524 original size:18 final size:19
Alignment explanation
Indices: 5521498--5521548 Score: 52
Period size: 19 Copynumber: 2.7 Consensus size: 19
5521488 TAATTTATAA
*
5521498 TACATTAAA-AAATAA-ACC
1 TACACTAAATAAATAATA-C
*
5521516 TACACTAAATATATAATAC
1 TACACTAAATAAATAATAC
5521535 TACACTAATATAAA
1 TACACTAA-ATAAA
5521549 CATTAAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 8 0.30
19 14 0.52
20 5 0.19
ACGTcount: A:0.57, C:0.16, G:0.00, T:0.27
Consensus pattern (19 bp):
TACACTAAATAAATAATAC
Found at i:5522191 original size:27 final size:29
Alignment explanation
Indices: 5522159--5522223 Score: 73
Period size: 30 Copynumber: 2.3 Consensus size: 29
5522149 ACCTTTGAGC
**
5522159 CTAAATTTT-GAAATTTGAAAA-ATA-GGA
1 CTAAATTTTAGAAA-TAAAAAATATATGGA
5522186 CTAAATTCTTAGAAATAAAAAATATATGGA
1 CTAAATT-TTAGAAATAAAAAATATATGGA
5522216 CTAAATTT
1 CTAAATTT
5522224 CAATTTTACA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 7 0.22
28 7 0.22
29 8 0.25
30 10 0.31
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.34
Consensus pattern (29 bp):
CTAAATTTTAGAAATAAAAAATATATGGA
Found at i:5527395 original size:7 final size:7
Alignment explanation
Indices: 5527383--5527407 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
5527373 ATTAGATTTT
5527383 TTTAAAA
1 TTTAAAA
5527390 TTTAAAA
1 TTTAAAA
5527397 TTTAAAA
1 TTTAAAA
5527404 TTTA
1 TTTA
5527408 CTCTTTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (7 bp):
TTTAAAA
Found at i:5527857 original size:18 final size:18
Alignment explanation
Indices: 5527830--5527869 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
5527820 GTAAGATATA
5527830 GTAA-TAAATAAATAAAT
1 GTAATTAAATAAATAAAT
*
5527847 TTAATTAAATAAATAAAT
1 GTAATTAAATAAATAAAT
5527865 GTAAT
1 GTAAT
5527870 ACTTGTCATA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (18 bp):
GTAATTAAATAAATAAAT
Found at i:5530424 original size:46 final size:46
Alignment explanation
Indices: 5530357--5530449 Score: 134
Period size: 46 Copynumber: 2.0 Consensus size: 46
5530347 CATGGCAAAG
*
5530357 TGTGAAACGTAGGTATGATA-TTCCAGTGAAGAAAACCACAATGAGT
1 TGTGAAAAGTAGGTATGATATTTCCA-TGAAGAAAACCACAATGAGT
* * *
5530403 TGTGAAAAGTAGGTATGATATTTTCATGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGATATTTCCATGAAGAAAACCACAATGAGT
5530449 T
1 T
5530450 ATAGCCTTGT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
46 38 0.90
47 4 0.10
ACGTcount: A:0.39, C:0.11, G:0.23, T:0.28
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGATATTTCCATGAAGAAAACCACAATGAGT
Found at i:5532635 original size:30 final size:28
Alignment explanation
Indices: 5532596--5532657 Score: 88
Period size: 28 Copynumber: 2.1 Consensus size: 28
5532586 ATGGATTTAA
*
5532596 ATTACTTATTATTTAAGTAAATAGTTATTT
1 ATTACTTATTA-TTAAGTAAA-AGATATTT
*
5532626 ATTATTTATTATTAAGTAAAAGATATTT
1 ATTACTTATTATTAAGTAAAAGATATTT
5532654 ATTA
1 ATTA
5532658 ATTAAATAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
28 11 0.37
29 9 0.30
30 10 0.33
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (28 bp):
ATTACTTATTATTAAGTAAAAGATATTT
Found at i:5533318 original size:17 final size:18
Alignment explanation
Indices: 5533296--5533329 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
5533286 TAAATGAGTT
5533296 AATTAGGAT-TAAATTGA
1 AATTAGGATATAAATTGA
*
5533313 AATTAGGGTATAAATTG
1 AATTAGGATATAAATTG
5533330 GATAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.00, G:0.21, T:0.35
Consensus pattern (18 bp):
AATTAGGATATAAATTGA
Found at i:5539668 original size:6 final size:6
Alignment explanation
Indices: 5539659--5539707 Score: 73
Period size: 6 Copynumber: 8.3 Consensus size: 6
5539649 TTATTTTTAT
* *
5539659 TTAATA TTAATA TTAATA TTAATA TAAAT- TTAATA TTAAGA TTAATA
1 TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA TTAATA
5539706 TT
1 TT
5539708 CTATTATATT
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
5 4 0.11
6 34 0.89
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (6 bp):
TTAATA
Found at i:5561474 original size:9 final size:9
Alignment explanation
Indices: 5561460--5561542 Score: 50
Period size: 8 Copynumber: 9.2 Consensus size: 9
5561450 AAAAAAAGTC
5561460 TTTATAATT
1 TTTATAATT
*
5561469 TTTATACTT
1 TTTATAATT
5561478 TTCTAATAATT
1 TT-T-ATAATT
*
5561489 TTAATAA--
1 TTTATAATT
*
5561496 TTTAAACATT
1 TTTATA-ATT
5561506 TTTAAATAATT
1 TTT--ATAATT
5561517 TTTAT-ATT
1 TTTATAATT
*
5561525 TTTA-ATTT
1 TTTATAATT
5561533 TTTA-AATT
1 TTTATAATT
5561541 TT
1 TT
5561543 AAAAAATTAA
Statistics
Matches: 58, Mismatches: 8, Indels: 17
0.70 0.10 0.20
Matches are distributed among these distances:
7 4 0.07
8 19 0.33
9 16 0.28
10 4 0.07
11 13 0.22
12 2 0.03
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (9 bp):
TTTATAATT
Found at i:5569810 original size:60 final size:59
Alignment explanation
Indices: 5569736--5569882 Score: 179
Period size: 59 Copynumber: 2.5 Consensus size: 59
5569726 TTTTTATTTT
* * * * *
5569736 TATTTTTTATCTTTAATTGGGAAGGATAGGAAA-ATGTTATTATCATTTATTACACTTATC
1 TATTTTTTAACTTTAATTGGGAAGGAAAGGAAATA-G-GAATACCATTTATTACACTTATC
* * ** *
5569796 TATTTTTTAACTTTAATTGGGGAGGAAATGACTTAGGAATACCATTTATTACACTTATT
1 TATTTTTTAACTTTAATTGGGAAGGAAAGGAAATAGGAATACCATTTATTACACTTATC
5569855 TATTTTTTAACTTTAATTGGGAAGGAAA
1 TATTTTTTAACTTTAATTGGGAAGGAAA
5569883 TGACTTTTTA
Statistics
Matches: 75, Mismatches: 11, Indels: 3
0.84 0.12 0.03
Matches are distributed among these distances:
59 46 0.61
60 28 0.37
61 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (59 bp):
TATTTTTTAACTTTAATTGGGAAGGAAAGGAAATAGGAATACCATTTATTACACTTATC
Found at i:5569973 original size:84 final size:84
Alignment explanation
Indices: 5569853--5570117 Score: 400
Period size: 84 Copynumber: 3.2 Consensus size: 84
5569843 ATTACACTTA
* *
5569853 TTTATTTTTTAACTTTAATTGGGAAGGAAATGACTTTTTATAGAAAAATATTATTAGGATTGCCA
1 TTTATTTTTTAACTTTAATTGGGAAGGAAATTACTTTTTATAGAAAAATATTATTAGGATTACCA
*
5569918 TTTGTTACACTTATTTTTT
66 TTTATTACACTTATTTTTT
*
5569937 TTTATTTTTTAACTTTAATTGGGGAGGAAATTACTTTTTATAGAAAAATATTATTAGGATTACCA
1 TTTATTTTTTAACTTTAATTGGGAAGGAAATTACTTTTTATAGAAAAATATTATTAGGATTACCA
5570002 TTTATTACACTTA----TT
66 TTTATTACACTTATTTTTT
* *
5570017 TAT-TTTTTTAACTTTAATTGGGAAGGAAATTACTTTTTATAGAAAAATGTTATTAGGATTACCA
1 TTTATTTTTTAACTTTAATTGGGAAGGAAATTACTTTTTATAGAAAAATATTATTAGGATTACCA
*
5570081 TTTATTACAC-T-TTTTTA
66 TTTATTACACTTATTTTTT
* *
5570098 CTTATTTTCTAACTTTAATT
1 TTTATTTTTTAACTTTAATT
5570118 TACTTTTTTT
Statistics
Matches: 165, Mismatches: 11, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
78 1 0.01
79 69 0.42
80 4 0.02
81 2 0.01
82 15 0.09
84 74 0.45
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.49
Consensus pattern (84 bp):
TTTATTTTTTAACTTTAATTGGGAAGGAAATTACTTTTTATAGAAAAATATTATTAGGATTACCA
TTTATTACACTTATTTTTT
Found at i:5570072 original size:79 final size:79
Alignment explanation
Indices: 5569828--5570117 Score: 429
Period size: 79 Copynumber: 3.6 Consensus size: 79
5569818 AGGAAATGAC
* *
5569828 TTAGGAATACCATTTATTACACTTATTTA-TTTTTTAACTTTAATTGGGAAGGAAATGACTTTTT
1 TTAGGATTACCATTTATTACACTTATTTATTTTTTTAACTTTAATTGGGAAGGAAATTACTTTTT
5569892 ATAGAAAAATATTA
66 ATAGAAAAATATTA
* * * *
5569906 TTAGGATTGCCATTTGTTACACTTATTTTTTTTTATTTTTTAACTTTAATTGGGGAGGAAATTAC
1 TTAGGATTACCATTTATTACACTTA----TTTAT-TTTTTTAACTTTAATTGGGAAGGAAATTAC
5569971 TTTTTATAGAAAAATATTA
61 TTTTTATAGAAAAATATTA
5569990 TTAGGATTACCATTTATTACACTTATTTATTTTTTTAACTTTAATTGGGAAGGAAATTACTTTTT
1 TTAGGATTACCATTTATTACACTTATTTATTTTTTTAACTTTAATTGGGAAGGAAATTACTTTTT
*
5570055 ATAGAAAAATGTTA
66 ATAGAAAAATATTA
*
5570069 TTAGGATTACCATTTATTACACTTTTTTACTTATTTTCTAACTTTAATT
1 TTAGGATTACCATTTATTACACTTATTTA-TT-TTTT-TAACTTTAATT
5570118 TACTTTTTTT
Statistics
Matches: 191, Mismatches: 12, Indels: 14
0.88 0.06 0.06
Matches are distributed among these distances:
78 22 0.12
79 75 0.39
80 6 0.03
81 4 0.02
82 14 0.07
84 70 0.37
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (79 bp):
TTAGGATTACCATTTATTACACTTATTTATTTTTTTAACTTTAATTGGGAAGGAAATTACTTTTT
ATAGAAAAATATTA
Found at i:5572214 original size:14 final size:13
Alignment explanation
Indices: 5572188--5572212 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5572178 TATTAAATTG
5572188 ATTTTTGAAAAAT
1 ATTTTTGAAAAAT
5572201 ATTTTTGAAAAA
1 ATTTTTGAAAAA
5572213 ATTGTATACC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (13 bp):
ATTTTTGAAAAAT
Found at i:5572393 original size:15 final size:16
Alignment explanation
Indices: 5572373--5572403 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
5572363 AAGTTTTTGA
5572373 TATAAATTT-AGTACT
1 TATAAATTTGAGTACT
5572388 TATAAATTTGAGTACT
1 TATAAATTTGAGTACT
5572404 AAAAAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.39, C:0.06, G:0.10, T:0.45
Consensus pattern (16 bp):
TATAAATTTGAGTACT
Found at i:5573200 original size:52 final size:52
Alignment explanation
Indices: 5573122--5573236 Score: 185
Period size: 52 Copynumber: 2.2 Consensus size: 52
5573112 ATGCTTACGT
* *
5573122 CTATCAAAGCTCTATTGCATTACAATGAATCAAACATACTGTTATTATTTCA
1 CTATCAAAGCTCCATTACATTACAATGAATCAAACATACTGTTATTATTTCA
* *
5573174 CTATCAAGGCTCCATTACATTACAATGAATCAAACATGCTGTTATTATTTCA
1 CTATCAAAGCTCCATTACATTACAATGAATCAAACATACTGTTATTATTTCA
*
5573226 CTGTCAAAGCT
1 CTATCAAAGCT
5573237 TTATGTATGA
Statistics
Matches: 57, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.35, C:0.21, G:0.10, T:0.35
Consensus pattern (52 bp):
CTATCAAAGCTCCATTACATTACAATGAATCAAACATACTGTTATTATTTCA
Found at i:5580552 original size:13 final size:13
Alignment explanation
Indices: 5580534--5580558 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5580524 TAAAAATATA
5580534 TTTTTATTTTTAT
1 TTTTTATTTTTAT
5580547 TTTTTATTTTTA
1 TTTTTATTTTTA
5580559 AAATATTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTATTTTTAT
Found at i:5580565 original size:11 final size:11
Alignment explanation
Indices: 5580551--5580580 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
5580541 TTTTATTTTT
5580551 TATTTTTAAAA
1 TATTTTTAAAA
5580562 TATTTTTAAAA
1 TATTTTTAAAA
5580573 TACTTTTT
1 TA-TTTTT
5580581 TTTATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTTAAAA
Found at i:5580986 original size:29 final size:30
Alignment explanation
Indices: 5580931--5580994 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 30
5580921 AATAGTCTAT
* *
5580931 ATTTTTATTTTTTTTAAAAGACTAAAT-CA
1 ATTTTTATTATTTTTAAAAGACAAAATACA
* * *
5580960 ATTTTTATTATTTTTAGAGGTCAAAATACA
1 ATTTTTATTATTTTTAAAAGACAAAATACA
5580990 ATTTT
1 ATTTT
5580995 ACAATTACTA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 22 0.76
30 7 0.24
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.52
Consensus pattern (30 bp):
ATTTTTATTATTTTTAAAAGACAAAATACA
Found at i:5582310 original size:3 final size:3
Alignment explanation
Indices: 5582297--5582328 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
5582287 TATATATTAT
*
5582297 TGC TGC CGC TGC TGC TGC TGC TGC TGC TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
5582329 TGCGGCACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.00, C:0.34, G:0.34, T:0.31
Consensus pattern (3 bp):
TGC
Found at i:5608783 original size:27 final size:29
Alignment explanation
Indices: 5608733--5608802 Score: 110
Period size: 27 Copynumber: 2.5 Consensus size: 29
5608723 AATAAAAAAA
*
5608733 TTACCAAAATGT-TATACATTTTTTTTAT
1 TTACCAAAATATATATACATTTTTTTTAT
5608761 TTACCAAAATATATATA-A-TTTTTTTAT
1 TTACCAAAATATATATACATTTTTTTTAT
5608788 TTACCAAAATATATA
1 TTACCAAAATATATA
5608803 AAAAAACCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 24 0.60
28 12 0.30
29 4 0.10
ACGTcount: A:0.40, C:0.10, G:0.01, T:0.49
Consensus pattern (29 bp):
TTACCAAAATATATATACATTTTTTTTAT
Found at i:5608897 original size:27 final size:27
Alignment explanation
Indices: 5608856--5608907 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
5608846 TTCCCTGGGT
5608856 CAAGGGAACACTGTTGGCGGCACCAAA
1 CAAGGGAACACTGTTGGCGGCACCAAA
5608883 CAAGGGAAC-CTTGTTGGCGGCACCA
1 CAAGGGAACAC-TGTTGGCGGCACCA
5608908 CCTTAAATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 1 0.04
27 23 0.96
ACGTcount: A:0.29, C:0.27, G:0.31, T:0.13
Consensus pattern (27 bp):
CAAGGGAACACTGTTGGCGGCACCAAA
Found at i:5609019 original size:14 final size:14
Alignment explanation
Indices: 5608959--5609020 Score: 54
Period size: 14 Copynumber: 4.1 Consensus size: 14
5608949 AGAGGGGAAG
5608959 AAGAA-GAAAGAAA
1 AAGAAGGAAAGAAA
5608972 AAGAAGGAAAAGGAAA
1 AAGAAGG-AAA-GAAA
*
5608988 GGAGAGGAAAGAAAGAAA
1 --A-A-GAAGGAAAGAAA
5609006 AAGAAGGAAAGAAA
1 AAGAAGGAAAGAAA
5609020 A
1 A
5609021 GGAAAGGGGA
Statistics
Matches: 40, Mismatches: 2, Indels: 13
0.73 0.04 0.24
Matches are distributed among these distances:
13 5 0.12
14 13 0.32
15 4 0.10
16 5 0.12
18 5 0.12
19 4 0.10
20 4 0.10
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (14 bp):
AAGAAGGAAAGAAA
Found at i:5609020 original size:38 final size:37
Alignment explanation
Indices: 5608962--5609094 Score: 168
Period size: 38 Copynumber: 3.6 Consensus size: 37
5608952 GGGGAAGAAG
5608962 AAGAAAGAAAAAGAAG---GAAAAGGAAAGGAGAGGA
1 AAGAAAGAAAAAGAAGAAAGAAAAGGAAAGGAGAGGA
*
5608996 AAGAAAGAAAAAGAAGGAAAGAAAAGGAAAGGGGAGGA
1 AAGAAAGAAAAAGAA-GAAAGAAAAGGAAAGGAGAGGA
*
5609034 AAGAAAGAAAAATAAGGAAAGAAAAGGAAAGGAGAAGAGA
1 AAGAAAGAAAAAGAA-GAAAGAAAAGGAAAGGAG-AG-GA
5609074 AGAGAAA-AAAAA-AAGAAAGAA
1 A-AGAAAGAAAAAGAAGAAAGAA
5609095 GAAGAAGAGG
Statistics
Matches: 89, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
34 15 0.17
35 1 0.01
38 56 0.63
39 4 0.04
40 8 0.09
41 5 0.06
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.01
Consensus pattern (37 bp):
AAGAAAGAAAAAGAAGAAAGAAAAGGAAAGGAGAGGA
Found at i:5609022 original size:10 final size:10
Alignment explanation
Indices: 5608964--5609064 Score: 79
Period size: 10 Copynumber: 10.5 Consensus size: 10
5608954 GGAAGAAGAA
*
5608964 GAAAGAAAAA
1 GAAAGAAAAG
*
5608974 GAAGGAAAAG
1 GAAAGAAAAG
* *
5608984 GAAAGGAGAG
1 GAAAGAAAAG
5608994 GAAAG-AAA-
1 GAAAGAAAAG
5609002 GAAA-AAGAAG
1 GAAAGAA-AAG
5609012 GAAAGAAAAG
1 GAAAGAAAAG
***
5609022 GAAAGGGGAG
1 GAAAGAAAAG
5609032 GAAAG-AAA-
1 GAAAGAAAAG
5609040 GAAA-AATAAG
1 GAAAGAA-AAG
5609050 GAAAGAAAAG
1 GAAAGAAAAG
5609060 GAAAG
1 GAAAG
5609065 GAGAAGAGAA
Statistics
Matches: 72, Mismatches: 11, Indels: 16
0.73 0.11 0.16
Matches are distributed among these distances:
8 10 0.14
9 7 0.10
10 51 0.71
11 4 0.06
ACGTcount: A:0.65, C:0.00, G:0.34, T:0.01
Consensus pattern (10 bp):
GAAAGAAAAG
Found at i:5609850 original size:19 final size:19
Alignment explanation
Indices: 5609817--5609868 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
5609807 AAAATATATA
**
5609817 TAATATTTTGGTATTTTT-
1 TAATATTTTATTATTTTTG
5609835 TAAATATTTTATTATTTTTG
1 T-AATATTTTATTATTTTTG
*
5609855 TAATGTTTTATTAT
1 TAATATTTTATTAT
5609869 GGGTTTTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
18 1 0.03
19 27 0.93
20 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (19 bp):
TAATATTTTATTATTTTTG
Found at i:5609893 original size:13 final size:13
Alignment explanation
Indices: 5609875--5609900 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5609865 TTATGGGTTT
5609875 TATAAAAAAATAA
1 TATAAAAAAATAA
5609888 TATAAAAAAATAA
1 TATAAAAAAATAA
5609901 AAAATTACCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
TATAAAAAAATAA
Found at i:5609944 original size:28 final size:28
Alignment explanation
Indices: 5609907--5609974 Score: 102
Period size: 28 Copynumber: 2.4 Consensus size: 28
5609897 ATAAAAAATT
*
5609907 ACCAAAATAT-TATAACTTTTTTTTATTG
1 ACCAAAATATATATAA-TTTTTATTATTG
*
5609935 ACCAAAATATATATAATTTTTATTATTT
1 ACCAAAATATATATAATTTTTATTATTG
5609963 ACCAAAATATAT
1 ACCAAAATATAT
5609975 CAAAAAAAAG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
28 32 0.86
29 5 0.14
ACGTcount: A:0.43, C:0.10, G:0.01, T:0.46
Consensus pattern (28 bp):
ACCAAAATATATATAATTTTTATTATTG
Found at i:5609997 original size:17 final size:17
Alignment explanation
Indices: 5609975--5610008 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
5609965 CAAAATATAT
5609975 CAAAAAA-AAGTAAAAAA
1 CAAAAAAGAA-TAAAAAA
5609992 CAAAAAAGAATAAAAAA
1 CAAAAAAGAATAAAAAA
5610009 AGGAAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (17 bp):
CAAAAAAGAATAAAAAA
Found at i:5612324 original size:14 final size:14
Alignment explanation
Indices: 5612305--5612333 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
5612295 TTTTTGTATC
5612305 AATTTAATTATTCT
1 AATTTAATTATTCT
5612319 AATTTAATTATTCT
1 AATTTAATTATTCT
5612333 A
1 A
5612334 CTTTCAGTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.55
Consensus pattern (14 bp):
AATTTAATTATTCT
Found at i:5612815 original size:27 final size:27
Alignment explanation
Indices: 5612777--5612844 Score: 91
Period size: 27 Copynumber: 2.5 Consensus size: 27
5612767 ATAACACGAG
* * *
5612777 TGGTTCCGCCAATAGGGAACCCTTGTT
1 TGGTGCCGCCAACAAGGAACCCTTGTT
*
5612804 TGGTGCCGCCAACAAGGAATCCTTGTT
1 TGGTGCCGCCAACAAGGAACCCTTGTT
*
5612831 TTGTGCCGCCAACA
1 TGGTGCCGCCAACA
5612845 GTGTTCCCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.21, C:0.28, G:0.25, T:0.26
Consensus pattern (27 bp):
TGGTGCCGCCAACAAGGAACCCTTGTT
Found at i:5612941 original size:27 final size:28
Alignment explanation
Indices: 5612911--5612980 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
5612901 GGTTTTTTTG
5612911 ATATATTTTGGTAAATAAAAAAA-TTAT
1 ATATATTTTGGTAAATAAAAAAATTTAT
*
5612938 ATATATTTTGGTAAATAAAAAAATTTGT
1 ATATATTTTGGTAAATAAAAAAATTTAT
*
5612966 ATAACATTTTGGTAA
1 AT-ATATTTTGGTAA
5612981 TTTTTTATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
27 23 0.59
28 5 0.13
29 11 0.28
ACGTcount: A:0.47, C:0.01, G:0.10, T:0.41
Consensus pattern (28 bp):
ATATATTTTGGTAAATAAAAAAATTTAT
Found at i:5615280 original size:24 final size:24
Alignment explanation
Indices: 5615252--5615303 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
5615242 TTTCTAGAAG
* *
5615252 ATTTAATATTTATGAGCATAATAT
1 ATTTAACATTTATGAACATAATAT
* *
5615276 ATTTAGCATTTATTAACATAATAT
1 ATTTAACATTTATGAACATAATAT
5615300 ATTT
1 ATTT
5615304 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (24 bp):
ATTTAACATTTATGAACATAATAT
Found at i:5619523 original size:24 final size:24
Alignment explanation
Indices: 5619489--5619540 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
5619479 TTTCTAGAAG
* **
5619489 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAACATAATAT
*
5619513 ATTTAGCATTTATTAACATAATAT
1 ATTTAGCATTTATGAACATAATAT
5619537 ATTT
1 ATTT
5619541 GACTTTGATT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.50
Consensus pattern (24 bp):
ATTTAGCATTTATGAACATAATAT
Found at i:5641278 original size:19 final size:20
Alignment explanation
Indices: 5641238--5641279 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
5641228 AATTTTAATA
5641238 AAAATGTTAGATAATTTAGT
1 AAAATGTTAGATAATTTAGT
*
5641258 AAAATGTTAGAT-ATTTGGT
1 AAAATGTTAGATAATTTAGT
5641277 AAA
1 AAA
5641280 TCCATATAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.45, C:0.00, G:0.17, T:0.38
Consensus pattern (20 bp):
AAAATGTTAGATAATTTAGT
Found at i:5641381 original size:20 final size:20
Alignment explanation
Indices: 5641358--5641405 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
5641348 TTTAGATATT
* *
5641358 TTGGTAAATCCATATAAAAA
1 TTGGTAAATCAATACAAAAA
*
5641378 TTGGTAAATCAATACAAATA
1 TTGGTAAATCAATACAAAAA
5641398 TTGGTAAA
1 TTGGTAAA
5641406 GTCTTAGATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.48, C:0.08, G:0.12, T:0.31
Consensus pattern (20 bp):
TTGGTAAATCAATACAAAAA
Found at i:5641567 original size:20 final size:19
Alignment explanation
Indices: 5641544--5641615 Score: 56
Period size: 20 Copynumber: 3.6 Consensus size: 19
5641534 GAAGTCTCAT
5641544 AAATATTTGTAAATCTATAG
1 AAATATTTGTAAATCT-TAG
* *
5641564 AAAT-TTTGACAAATTGTTAG
1 AAATATTTG-TAAA-TCTTAG
* *
5641584 ATATATTGGTAAATCCTTAG
1 AAATATTTGTAAAT-CTTAG
*
5641604 AAATATTAGTAA
1 AAATATTTGTAA
5641616 TTTGTCAAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 8
0.71 0.14 0.14
Matches are distributed among these distances:
19 5 0.12
20 30 0.75
21 5 0.12
ACGTcount: A:0.43, C:0.06, G:0.12, T:0.39
Consensus pattern (19 bp):
AAATATTTGTAAATCTTAG
Found at i:5641682 original size:20 final size:20
Alignment explanation
Indices: 5641657--5641762 Score: 133
Period size: 20 Copynumber: 5.3 Consensus size: 20
5641647 TTTTGGTAAA
5641657 TGGTAAATCATTAGATATAT
1 TGGTAAATCATTAGATATAT
** *
5641677 TGGTAAATTGTTAGAAATAT
1 TGGTAAATCATTAGATATAT
* *
5641697 TGGAAAATCGTTAGATATAT
1 TGGTAAATCATTAGATATAT
*
5641717 TGGTAAATCATTAGATA-CT
1 TGGTAAATCATTAGATATAT
* *
5641736 TGGTAAATTATTAGATATTT
1 TGGTAAATCATTAGATATAT
5641756 TGGTAAA
1 TGGTAAA
5641763 GTCGTAGAAA
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
19 17 0.23
20 57 0.77
ACGTcount: A:0.39, C:0.04, G:0.18, T:0.40
Consensus pattern (20 bp):
TGGTAAATCATTAGATATAT
Found at i:5641770 original size:20 final size:19
Alignment explanation
Indices: 5641657--5641781 Score: 90
Period size: 20 Copynumber: 6.3 Consensus size: 19
5641647 TTTTGGTAAA
*
5641657 TGGTAAATCATTAGATATAT
1 TGGTAAATC-GTAGATATAT
* *
5641677 TGGTAAATTGTTAGAAATAT
1 TGGTAAATCG-TAGATATAT
*
5641697 TGGAAAATCGTTAGATATAT
1 TGGTAAATCG-TAGATATAT
* *
5641717 TGGTAAATCATTAGATA-CT
1 TGGTAAATC-GTAGATATAT
** *
5641736 TGGTAAATTATTAGATATTT
1 TGGTAAA-TCGTAGATATAT
* *
5641756 TGGTAAAGTCGTAGAAATTT
1 TGGTAAA-TCGTAGATATAT
5641776 TGGTAA
1 TGGTAA
5641782 TTGTTAAGAC
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
19 15 0.17
20 71 0.83
ACGTcount: A:0.38, C:0.04, G:0.19, T:0.39
Consensus pattern (19 bp):
TGGTAAATCGTAGATATAT
Found at i:5641901 original size:20 final size:20
Alignment explanation
Indices: 5641878--5642066 Score: 123
Period size: 20 Copynumber: 9.5 Consensus size: 20
5641868 ATCCATAAAA
**
5641878 ATTTTGGTAAATTGTTAGAT
1 ATTTTGGTAAATCATTAGAT
* *
5641898 ATTTTGATAAAACATTACGA-
1 ATTTTGGTAAATCATTA-GAT
5641918 ATTTTGGTAAATCATTAGAT
1 ATTTTGGTAAATCATTAGAT
* * * *
5641938 GTTTTGGTAAA-CCTTATAA
1 ATTTTGGTAAATCATTAGAT
* ** *
5641957 ATTTTGGTAATTTGTTCGAT
1 ATTTTGGTAAATCATTAGAT
* **
5641977 ATATCAGTAAATCATTAGA-
1 ATTTTGGTAAATCATTAGAT
* *
5641996 ATTTTTAGTAAACCATTAGAT
1 A-TTTTGGTAAATCATTAGAT
* * **
5642017 ATATAGGTAAATTGTTAGAT
1 ATTTTGGTAAATCATTAGAT
* *
5642037 ATTTTGGTAAATCCTTAGAG
1 ATTTTGGTAAATCATTAGAT
*
5642057 ATATTGGTAA
1 ATTTTGGTAA
5642067 TTAAAGTCTC
Statistics
Matches: 125, Mismatches: 39, Indels: 10
0.72 0.22 0.06
Matches are distributed among these distances:
19 17 0.14
20 105 0.84
21 3 0.02
ACGTcount: A:0.35, C:0.06, G:0.16, T:0.42
Consensus pattern (20 bp):
ATTTTGGTAAATCATTAGAT
Found at i:5641921 original size:40 final size:39
Alignment explanation
Indices: 5641876--5641978 Score: 116
Period size: 39 Copynumber: 2.6 Consensus size: 39
5641866 AAATCCATAA
5641876 AAATTTTGGTAAATTGTTAGATATTTTGATAAAACATTAC
1 AAATTTTGGTAAATTGTTAGATATTTTGAT-AAACATTAC
* ** * * * *
5641916 GAATTTTGGTAAATCATTAGATGTTTTGGTAAACCTTAT
1 AAATTTTGGTAAATTGTTAGATATTTTGATAAACATTAC
* *
5641955 AAATTTTGGTAATTTGTTCGATAT
1 AAATTTTGGTAAATTGTTAGATAT
5641979 ATCAGTAAAT
Statistics
Matches: 50, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
39 25 0.50
40 25 0.50
ACGTcount: A:0.34, C:0.06, G:0.16, T:0.45
Consensus pattern (39 bp):
AAATTTTGGTAAATTGTTAGATATTTTGATAAACATTAC
Found at i:5642026 original size:79 final size:80
Alignment explanation
Indices: 5641858--5642028 Score: 195
Period size: 79 Copynumber: 2.1 Consensus size: 80
5641848 AGTAACATAA
**
5641858 ATATTGGTAAATCCATAAAAATTTTGGTAAATTGTTAGATATTTTGATAAAACATTACGAATTTT
1 ATATTGGTAAATCCATAAAAATTTTGGTAAATTGTTAGATATTCAGATAAAACATTACGAATTTT
* *
5641923 GGTAAATCATTAGAT
66 AGTAAACCATTAGAT
* * * * * * *
5641938 GTTTTGGTAAA-CCTTATAAATTTTGGTAATTTGTTCGATATATCAG-TAAATCATTA-GAATTT
1 ATATTGGTAAATCCATAAAAATTTTGGTAAATTGTTAGATAT-TCAGATAAAACATTACGAA-TT
5642000 TTAGTAAACCATTAGAT
64 TTAGTAAACCATTAGAT
*
5642017 ATATAGGTAAAT
1 ATATTGGTAAAT
5642029 TGTTAGATAT
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
78 3 0.04
79 60 0.81
80 11 0.15
ACGTcount: A:0.38, C:0.07, G:0.14, T:0.41
Consensus pattern (80 bp):
ATATTGGTAAATCCATAAAAATTTTGGTAAATTGTTAGATATTCAGATAAAACATTACGAATTTT
AGTAAACCATTAGAT
Found at i:5642047 original size:60 final size:60
Alignment explanation
Indices: 5641918--5642055 Score: 154
Period size: 60 Copynumber: 2.3 Consensus size: 60
5641908 AACATTACGA
* * * * * *
5641918 ATTTTGGTAAATCATTAG-ATGTTTTGGTAAACCTTATAAATTTTGGTAATTTGTTCGAT
1 ATTTTGGTAAATCATTAGAATGTTTTAGTAAACCTTAGAAATATAGGTAAATTGTTAGAT
* ** *
5641977 ATATCAGTAAATCATTAGAAT-TTTTAGTAAACCATTAGATATATAGGTAAATTGTTAGAT
1 ATTTTGGTAAATCATTAGAATGTTTTAGTAAACC-TTAGAAATATAGGTAAATTGTTAGAT
*
5642037 ATTTTGGTAAATCCTTAGA
1 ATTTTGGTAAATCATTAGA
5642056 GATATTGGTA
Statistics
Matches: 63, Mismatches: 14, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
59 26 0.41
60 37 0.59
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (60 bp):
ATTTTGGTAAATCATTAGAATGTTTTAGTAAACCTTAGAAATATAGGTAAATTGTTAGAT
Found at i:5642154 original size:20 final size:20
Alignment explanation
Indices: 5642106--5642156 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
5642096 TGGAAATATT
* * * *
5642106 TAGAAATATTGTTAAATTGT
1 TAGAAATTTTGATAAAGTGA
*
5642126 TAGATATTTTGATAAAGTGA
1 TAGAAATTTTGATAAAGTGA
5642146 TAGAAATTTTG
1 TAGAAATTTTG
5642157 GTAATTGATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (20 bp):
TAGAAATTTTGATAAAGTGA
Found at i:5642295 original size:20 final size:20
Alignment explanation
Indices: 5642272--5642324 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
5642262 AAGTTCTTAA
5642272 AAATATTGGTAAATGGTTAG
1 AAATATTGGTAAATGGTTAG
*
5642292 AAATATTAGTAAATGGTTAG
1 AAATATTGGTAAATGGTTAG
* *
5642312 ATATTTTGGTAAA
1 AAATATTGGTAAA
5642325 GTTACAGAAC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.42, C:0.00, G:0.21, T:0.38
Consensus pattern (20 bp):
AAATATTGGTAAATGGTTAG
Found at i:5642393 original size:20 final size:20
Alignment explanation
Indices: 5642368--5642433 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 20
5642358 TACATGGTTT
5642368 TGAAATTTTGA-AAATATTGG
1 TGAAATTTT-ATAAATATTGG
* *
5642388 TGAAATCTTATAAATTTTGG
1 TGAAATTTTATAAATATTGG
5642408 T-AAAGTTTTATAAATATTGG
1 TGAAA-TTTTATAAATATTGG
*
5642428 TAAAAT
1 TGAAAT
5642434 GATAGATGTT
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
19 4 0.10
20 32 0.82
21 3 0.08
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.42
Consensus pattern (20 bp):
TGAAATTTTATAAATATTGG
Found at i:5642447 original size:20 final size:20
Alignment explanation
Indices: 5642424--5642471 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
5642414 TTTATAAATA
*
5642424 TTGGTAAA-ATGATAGATGTT
1 TTGGTAAACAT-ATAGATATT
5642444 TTGGTAAACATATAGATATT
1 TTGGTAAACATATAGATATT
*
5642464 TTGATAAA
1 TTGGTAAA
5642472 TCCTTAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 23 0.92
21 2 0.08
ACGTcount: A:0.40, C:0.02, G:0.19, T:0.40
Consensus pattern (20 bp):
TTGGTAAACATATAGATATT
Found at i:5642724 original size:20 final size:20
Alignment explanation
Indices: 5642701--5642837 Score: 100
Period size: 20 Copynumber: 6.8 Consensus size: 20
5642691 TAATAAATTG
*
5642701 TTAGATATTTTGGTAAATCC
1 TTAGATATTTTGGTAAATCA
* *
5642721 TTAGAAATTTTGATAAA-CTA
1 TTAGATATTTTGGTAAATC-A
* *
5642741 TTAGATATATTGGTAAAACGA
1 TTAGATATTTTGGTAAATC-A
*
5642762 TATA-A-ATTTTGGTAAATCG
1 T-TAGATATTTTGGTAAATCA
* * * *
5642781 TTAGGTATATTGATAAATAA
1 TTAGATATTTTGGTAAATCA
* *
5642801 TTAGATATATTGGTAAATCC
1 TTAGATATTTTGGTAAATCA
* *
5642821 TTAAATATTTTGATAAA
1 TTAGATATTTTGGTAAA
5642838 ACCACAGAAC
Statistics
Matches: 90, Mismatches: 22, Indels: 10
0.74 0.18 0.08
Matches are distributed among these distances:
18 2 0.02
19 2 0.02
20 80 0.89
21 4 0.04
22 2 0.02
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.41
Consensus pattern (20 bp):
TTAGATATTTTGGTAAATCA
Found at i:5642831 original size:60 final size:61
Alignment explanation
Indices: 5642705--5642837 Score: 164
Period size: 60 Copynumber: 2.2 Consensus size: 61
5642695 AAATTGTTAG
* *
5642705 ATATTTTGGTAAATCCTTAGAAATTTTGATAAACTATTAGATATATTGGTAAAACGATATA
1 ATATTTTGGTAAATCCTTAGAAATATTGATAAACTATTAGATATATTGGTAAAACCATATA
* ** * *
5642766 A-ATTTTGGTAAATCGTTAGGTATATTGATAAA-TAATTAGATATATTGGTAAATCCTTA-A
1 ATATTTTGGTAAATCCTTAGAAATATTGATAAACT-ATTAGATATATTGGTAAAACCATATA
*
5642825 ATATTTTGATAAA
1 ATATTTTGGTAAA
5642838 ACCACAGAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
59 3 0.05
60 58 0.94
61 1 0.02
ACGTcount: A:0.41, C:0.05, G:0.14, T:0.41
Consensus pattern (61 bp):
ATATTTTGGTAAATCCTTAGAAATATTGATAAACTATTAGATATATTGGTAAAACCATATA
Found at i:5644474 original size:21 final size:21
Alignment explanation
Indices: 5644432--5644474 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
5644422 CAATGATGAC
*
5644432 GAACGACGACAGGGGAGAGAG
1 GAACGACGACAGGGAAGAGAG
*
5644453 GAACGAC-ACAGGAGAAGGGAG
1 GAACGACGACAGG-GAAGAGAG
5644474 G
1 G
5644475 GCTTTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.40, C:0.14, G:0.47, T:0.00
Consensus pattern (21 bp):
GAACGACGACAGGGAAGAGAG
Found at i:5672989 original size:27 final size:24
Alignment explanation
Indices: 5672941--5672992 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
5672931 AAACATTATT
*
5672941 CTCCTTACTATTACAATTCACCAC
1 CTCCTTACTACTACAATTCACCAC
* *
5672965 CTCCTTACTACTACAAGTCTCCAC
1 CTCCTTACTACTACAATTCACCAC
5672989 CTCC
1 CTCC
5672993 ACCATCTCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.25, C:0.42, G:0.02, T:0.31
Consensus pattern (24 bp):
CTCCTTACTACTACAATTCACCAC
Found at i:5673072 original size:96 final size:96
Alignment explanation
Indices: 5672961--5674170 Score: 1658
Period size: 96 Copynumber: 12.6 Consensus size: 96
5672951 TTACAATTCA
* * *
5672961 CCACCTCCTTACTACTACAAGTCTCCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
5673026 CAAATCACCACCACCCCCTTCACCTAGTCCC
66 CAAATCACCACCACCCCCTTCACCTAGTCCC
* *
5673057 CCACCACCATACTACTACAACTCACCACCTCCACCATCTCCTTCACCACCTCCTCCTTACTATTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
* * *
5673122 CAAGTCTCCACC-CCCACCCTCACCTAGTCCC
66 CAAATCACCACCACCC-CCTTCACCTAGTCCC
* *
5673153 TCACCACCATACTACTACAAGTCACCACCTCCACCGTCTCCCTCACCACCTCCTCCTTACTATTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
5673218 CAAATCACCACCACCCCCTTCACCTAGTCCC
66 CAAATCACCACCACCCCCTTCACCTAGTCCC
*
5673249 CCACCACCATACTACTACAAGTCACCACCTCCACCGTCTCCCTCACCACCTCCTCCTTACTATTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
5673314 CAAATCACCACCACCCCCTTCACCTAGTCCC
66 CAAATCACCACCACCCCCTTCACCTAGTCCC
* *
5673345 CCACCACCATACTACTACAACTCACCACCTCCACCATCTCCTTCACCACCTCCTCCTTACTATTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
* * *
5673410 CAAGTCTCCACC-CCCACCCTCACCTAGTCCC
66 CAAATCACCACCACCC-CCTTCACCTAGTCCC
*
5673441 CCACCACCATACTACTACAAGTCACCACCTCCACCGTCTCCCTCACCACCTCCTCCTTACTATTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
*
5673506 CAAATCACCACCACCCCCTTCACCTAGTTCC
66 CAAATCACCACCACCCCCTTCACCTAGTCCC
*
5673537 CCACCACCATACTACTACAAGTCACCACCTCCACCGTCTCCCTCACCACCTCCTCCTTACTATTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
5673602 CAAATCACCACCACCCCCTTCACCTAGTCCC
66 CAAATCACCACCACCCCCTTCACCTAGTCCC
* *
5673633 CCACCACCATACTACTACAACTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTACTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
* *
5673698 CAAATCACCACCACCACCTTCACCTAGTCCT
66 CAAATCACCACCACCCCCTTCACCTAGTCCC
*
5673729 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTACTA
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
*
5673794 CAAATCACCACC-CCCACCTTCACCTAGTCCT
66 CAAATCACCACCACCC-CCTTCACCTAGTCCC
* * * * * * * *
5673825 CCACCACCCTACTACTACAAGTCTCCACCTTCACCATCT-CCT-AGTCCCCCACCACCATACTAC
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCA--CCACCTCCTCCTTACTAT
* *
5673888 TACAAATCACCACC-CCCACCATCTCCTAG-CCC
64 TACAAATCACCACCACCC-CCTTCACCTAGTCCC
* * * * *
5673920 TCCACCACCATATTACTACAGGTCCCCACCTCCACCATCT-CCT-AGTCCACCAT-CACCGTACT
1 -CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCA--CCACC-TCCTCCTTACT
* *
5673982 ACTACAAGTCACCACCACCCCCTTCACCTAGTCCC
62 ATTACAAATCACCACCACCCCCTTCACCTAGTCCC
* * * * * *
5674017 CCACCACCATACTACTACAAGTCACCGCCTCCACCATCT-CCT-AGTCCCCCACCACCATAATAT
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCA--CCACCTCCTCCTTACTAT
* * *
5674080 TACAAGTCACCACCACCACCATCTC-CCTCA--CCA
64 TACAAATCACCACCACC-CCCT-TCACCT-AGTCCC
* * * * * * *
5674113 CCACCTCCATACTACTACAAATCTCCTCCTCCACCGTCTCCATCACCACCACCTCCTT
1 CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTT
5674171 CTCCATCACC
Statistics
Matches: 1019, Mismatches: 78, Indels: 34
0.90 0.07 0.03
Matches are distributed among these distances:
94 1 0.00
95 13 0.01
96 981 0.96
97 20 0.02
98 4 0.00
ACGTcount: A:0.25, C:0.51, G:0.03, T:0.21
Consensus pattern (96 bp):
CCACCACCATACTACTACAAGTCACCACCTCCACCATCTCCCTCACCACCTCCTCCTTACTATTA
CAAATCACCACCACCCCCTTCACCTAGTCCC
Found at i:5674159 original size:69 final size:69
Alignment explanation
Indices: 5674086--5674216 Score: 163
Period size: 69 Copynumber: 1.9 Consensus size: 69
5674076 ATATTACAAG
* * *
5674086 TCACCACCACCACCATCTCCCTCACCACCACCTCCATACTACTACAAATCTCCTCCTCCACCGTC
1 TCACCACCACCACCATCTCCATCACCACCACCACCATACTACTACAAATCACCTCCTCCACCGTC
5674151 TCCA
66 TCCA
* * * * * * * *
5674155 TCACCACCACCTCCTTCTCCATCACCCCCGCCACCTTACTATTATAAGTCACCTCCTCCACC
1 TCACCACCACCACCATCTCCATCACCACCACCACCATACTACTACAAATCACCTCCTCCACC
5674217 ACCTCCTTAT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
69 51 1.00
ACGTcount: A:0.23, C:0.53, G:0.02, T:0.22
Consensus pattern (69 bp):
TCACCACCACCACCATCTCCATCACCACCACCACCATACTACTACAAATCACCTCCTCCACCGTC
TCCA
Found at i:5674191 original size:21 final size:21
Alignment explanation
Indices: 5674143--5674191 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
5674133 ATCTCCTCCT
*
5674143 CCACCGTCTCCATCACCACCA
1 CCACCTTCTCCATCACCACCA
* * *
5674164 CCTCCTTCTCCATCACCCCCG
1 CCACCTTCTCCATCACCACCA
5674185 CCACCTT
1 CCACCTT
5674192 ACTATTATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.59, G:0.04, T:0.20
Consensus pattern (21 bp):
CCACCTTCTCCATCACCACCA
Found at i:5689882 original size:25 final size:25
Alignment explanation
Indices: 5689809--5689875 Score: 91
Period size: 25 Copynumber: 2.7 Consensus size: 25
5689799 TTCCGAGTTG
*
5689809 AATAACGGGAAGCTCATGCGAGCTA
1 AATAATGGGAAGCTCATGCGAGCTA
*
5689834 AATAATGGGAATCTCATGCGAGCTA
1 AATAATGGGAAGCTCATGCGAGCTA
*
5689859 AGT-ATGGGGAAGCTCAT
1 AATAAT-GGGAAGCTCAT
5689876 AAGAGCTGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
24 2 0.05
25 35 0.95
ACGTcount: A:0.34, C:0.16, G:0.28, T:0.21
Consensus pattern (25 bp):
AATAATGGGAAGCTCATGCGAGCTA
Found at i:5692763 original size:13 final size:13
Alignment explanation
Indices: 5692745--5692769 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
5692735 TAAGTTATAT
5692745 GTGTGAAAATTTC
1 GTGTGAAAATTTC
5692758 GTGTGAAAATTT
1 GTGTGAAAATTT
5692770 GATAGTTTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:5694377 original size:41 final size:41
Alignment explanation
Indices: 5694330--5694421 Score: 123
Period size: 41 Copynumber: 2.2 Consensus size: 41
5694320 GGTTTAAAAC
* *
5694330 CTAGCAGGCTTAAG-GCCGGTGAAATTATTCGGACTTTATGT
1 CTAGCAGGCTT-AGTGCCGGTGAAATAATTCGGACTTTAAGT
* **
5694371 CTAGCAGGCTTTGTGCTTGTGAAATAATTCGGACTTTAAGT
1 CTAGCAGGCTTAGTGCCGGTGAAATAATTCGGACTTTAAGT
5694412 CTAGCAGGCT
1 CTAGCAGGCT
5694422 AATTGCCAGT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
40 1 0.02
41 44 0.98
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (41 bp):
CTAGCAGGCTTAGTGCCGGTGAAATAATTCGGACTTTAAGT
Found at i:5694434 original size:41 final size:41
Alignment explanation
Indices: 5694330--5694434 Score: 115
Period size: 41 Copynumber: 2.6 Consensus size: 41
5694320 GGTTTAAAAC
* * * *
5694330 CTAGCAGGCTTAA-GGCCGGTGAAATTATTCGGACTTTATGT
1 CTAGCAGGC-TAATTGCCAGTGAAATAATTCGGACTTTAAGT
* **
5694371 CTAGCAGGCT-TTGTGCTTGTGAAATAATTCGGACTTTAAGT
1 CTAGCAGGCTAAT-TGCCAGTGAAATAATTCGGACTTTAAGT
5694412 CTAGCAGGCTAATTGCCAGTGAA
1 CTAGCAGGCTAATTGCCAGTGAA
5694435 TTGAATCAGG
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
40 1 0.02
41 50 0.96
42 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (41 bp):
CTAGCAGGCTAATTGCCAGTGAAATAATTCGGACTTTAAGT
Found at i:5696842 original size:17 final size:17
Alignment explanation
Indices: 5696820--5696867 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 17
5696810 TTTTTATGCT
*
5696820 TTATATATATTATTTTA
1 TTATATATATTATTATA
5696837 TTATATATTATATATTATA
1 TTATATA-TAT-TATTATA
5696856 TTATATTATATT
1 TTATA-TATATT
5696868 GTATTGTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 7 0.26
18 4 0.15
19 14 0.52
20 2 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTATATATATTATTATA
Found at i:5696847 original size:7 final size:7
Alignment explanation
Indices: 5696823--5696856 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
5696813 TTATGCTTTA
5696823 TATATAT
1 TATATAT
*
5696830 TATTTTAT
1 TA-TATAT
5696838 TATATAT
1 TATATAT
5696845 TATATAT
1 TATATAT
5696852 TATAT
1 TATAT
5696857 TATATTATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 18 0.75
8 6 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
TATATAT
Found at i:5696848 original size:5 final size:5
Alignment explanation
Indices: 5696820--5696886 Score: 63
Period size: 5 Copynumber: 14.2 Consensus size: 5
5696810 TTTTTATGCT
5696820 TTATA -TATA TTAT- TT-TA TTATA -TAT- TATATA TTATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA TTATA T-TATA TTATA TTATA TTATA
* * *
5696866 TTGTA TTGTG TTATA TTATA T
1 TTATA TTATA TTATA TTATA T
5696887 AAGTAAAAAA
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
3 1 0.02
4 11 0.21
5 39 0.75
6 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.61
Consensus pattern (5 bp):
TTATA
Found at i:5696848 original size:22 final size:24
Alignment explanation
Indices: 5696823--5696866 Score: 74
Period size: 22 Copynumber: 1.9 Consensus size: 24
5696813 TTATGCTTTA
5696823 TATATATTAT-TT-TATTATATAT
1 TATATATTATATTATATTATATAT
5696845 TATATATTATATTATATTATAT
1 TATATATTATATTATATTATAT
5696867 TGTATTGTGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
23 2 0.10
24 8 0.40
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (24 bp):
TATATATTATATTATATTATATAT
Found at i:5696855 original size:12 final size:12
Alignment explanation
Indices: 5696823--5696861 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
5696813 TTATGCTTTA
*
5696823 TATATATTATTT
1 TATATATTATAT
5696835 TAT-TA-TATAT
1 TATATATTATAT
5696845 TATATATTATAT
1 TATATATTATAT
5696857 TATAT
1 TATAT
5696862 TATATTGTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
10 7 0.29
11 4 0.17
12 13 0.54
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TATATATTATAT
Found at i:5696865 original size:15 final size:14
Alignment explanation
Indices: 5696819--5696886 Score: 70
Period size: 15 Copynumber: 4.9 Consensus size: 14
5696809 ATTTTTATGC
5696819 TTTATA-TATATTA
1 TTTATATTATATTA
5696832 TTT-TATTATA-TA
1 TTTATATTATATTA
5696844 TTATATATTATATTA
1 TT-TATATTATATTA
* *
5696859 TATTATATTGTATTG
1 T-TTATATTATATTA
5696874 TGTTATATTATAT
1 T-TTATATTATAT
5696887 AAGTAAAAAA
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
12 6 0.13
13 8 0.17
14 7 0.15
15 24 0.52
16 1 0.02
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (14 bp):
TTTATATTATATTA
Found at i:5697744 original size:18 final size:18
Alignment explanation
Indices: 5697707--5697756 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 18
5697697 AAATGTTATT
*
5697707 ATTATTATTGTTAATATA
1 ATTATTATTATTAATATA
* *
5697725 ATTATTATTATTATTTTA
1 ATTATTATTATTAATATA
* *
5697743 ATGATTATAATTAA
1 ATTATTATTATTAA
5697757 AAGTGAAAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (18 bp):
ATTATTATTATTAATATA
Found at i:5697749 original size:21 final size:23
Alignment explanation
Indices: 5697697--5697755 Score: 70
Period size: 24 Copynumber: 2.7 Consensus size: 23
5697687 AATTGAATAA
5697697 AAATG-TTATTATTATTATTGTT
1 AAATGATTATTATTATTATTGTT
*
5697719 AATATAATTATTATTATTATT-TT
1 AA-ATGATTATTATTATTATTGTT
*
5697742 -AATGATTATAATTA
1 AAATGATTATTATTA
5697756 AAAGTGAAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
21 11 0.34
22 3 0.09
23 4 0.12
24 14 0.44
ACGTcount: A:0.39, C:0.00, G:0.05, T:0.56
Consensus pattern (23 bp):
AAATGATTATTATTATTATTGTT
Found at i:5699441 original size:25 final size:22
Alignment explanation
Indices: 5699384--5699426 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
5699374 GCACTATTGA
5699384 ACAGAGAGCACTAAAGTGCTAT
1 ACAGAGAGCACTAAAGTGCTAT
*
5699406 ACAGAGAGCACTAATGTGCTA
1 ACAGAGAGCACTAAAGTGCTA
5699427 ATAATCGGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.19, G:0.23, T:0.19
Consensus pattern (22 bp):
ACAGAGAGCACTAAAGTGCTAT
Found at i:5701406 original size:45 final size:45
Alignment explanation
Indices: 5701354--5701460 Score: 135
Period size: 45 Copynumber: 2.4 Consensus size: 45
5701344 GTAGCAGTAA
* * *
5701354 CAGTAACAATAATAGTAATAGTATTCAACACACAAAGTG-CTAAAT
1 CAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTC-AAAT
* * * *
5701399 CTGTAACAGCAACGGTAACAGTATTCGACACACAAAGTGTCAAAT
1 CAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCAAAT
5701444 CAGTAACAGTAACAGTA
1 CAGTAACAGTAACAGTA
5701461 GTCGGCACAT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 50 0.98
46 1 0.02
ACGTcount: A:0.45, C:0.19, G:0.15, T:0.21
Consensus pattern (45 bp):
CAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGTCAAAT
Found at i:5701565 original size:45 final size:45
Alignment explanation
Indices: 5701495--5701598 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 45
5701485 TAATCAGTAA
* * * **
5701495 CGGTAGCAGTAACAGTAACAGTATTTAACACACAATGTGTTGAAT
1 CGGTAACAGTAACAATAACAGTATTTAACACACAAAGTGCCGAAT
* * *
5701540 CTGTAACAGTAACAATAATAGTATTTGACACACAAAGTGCCGAAT
1 CGGTAACAGTAACAATAACAGTATTTAACACACAAAGTGCCGAAT
*
5701585 CGGTACCAGTAACA
1 CGGTAACAGTAACA
5701599 GTAGTCGACA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 49 1.00
ACGTcount: A:0.39, C:0.18, G:0.18, T:0.24
Consensus pattern (45 bp):
CGGTAACAGTAACAATAACAGTATTTAACACACAAAGTGCCGAAT
Found at i:5701652 original size:18 final size:18
Alignment explanation
Indices: 5701622--5701669 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
5701612 AGTGCCTGCT
* *
5701622 CAATAATCAGTAACGGTAG
1 CAATAA-CAGTAACAGTAA
5701641 CAATAACAGTAACAGTAA
1 CAATAACAGTAACAGTAA
*
5701659 AAATAACAGTA
1 CAATAACAGTA
5701670 TTCAACACAC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 20 0.77
19 6 0.23
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.19
Consensus pattern (18 bp):
CAATAACAGTAACAGTAA
Found at i:5701681 original size:152 final size:153
Alignment explanation
Indices: 5701492--5701771 Score: 409
Period size: 152 Copynumber: 1.8 Consensus size: 153
5701482 CAGTAATCAG
* * * * * * *
5701492 TAACGGTAGCAGTAACAGTAACAGTATTTAACACACAATGTGTTGAATCTGTAACAGTAACAATA
1 TAACAGTAACAGTAAAAATAACAGTATTCAACACACAAAGTGTTGAATCTGTAACAATAACAATA
* * * * *
5701557 ATAGTATTTGACACACAAAGTGCCGAATCGGTACCAGTAACAGTAGTCGACACAT-AGTGCCTGC
66 ACAGTATTCGACACACAAAGTGCCAAATCGGTAACAATAACAGTAGTCGACACATAAGTGCCTGC
5701621 TCAATAATCAGTAACGGTAGCAA
131 TCAATAATCAGTAACGGTAGCAA
**
5701644 TAACAGTAACAGTAAAAATAACAGTATTCAACACACAAAGTGTTGAATCTGTAACAATAACGGTA
1 TAACAGTAACAGTAAAAATAACAGTATTCAACACACAAAGTGTTGAATCTGTAACAATAACAATA
* *
5701709 ACAGTATTCGACACACAAAGTGCCAAATCGGTAACAATAATAGTAGTCGGCACATAAGTGCCT
66 ACAGTATTCGACACACAAAGTGCCAAATCGGTAACAATAACAGTAGTCGACACATAAGTGCCT
5701772 AATCAGTAAG
Statistics
Matches: 111, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
152 104 0.94
153 7 0.06
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (153 bp):
TAACAGTAACAGTAAAAATAACAGTATTCAACACACAAAGTGTTGAATCTGTAACAATAACAATA
ACAGTATTCGACACACAAAGTGCCAAATCGGTAACAATAACAGTAGTCGACACATAAGTGCCTGC
TCAATAATCAGTAACGGTAGCAA
Found at i:5701713 original size:45 final size:45
Alignment explanation
Indices: 5701662--5701748 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
5701652 ACAGTAAAAA
*** *
5701662 TAACAGTATTCAACACACAAAGTGTTGAATCTGTAACAATAACGG
1 TAACAGTATTCAACACACAAAGTGCCAAATCGGTAACAATAACGG
*
5701707 TAACAGTATTCGACACACAAAGTGCCAAATCGGTAACAATAA
1 TAACAGTATTCAACACACAAAGTGCCAAATCGGTAACAATAA
5701749 TAGTAGTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.44, C:0.20, G:0.15, T:0.22
Consensus pattern (45 bp):
TAACAGTATTCAACACACAAAGTGCCAAATCGGTAACAATAACGG
Found at i:5702005 original size:40 final size:40
Alignment explanation
Indices: 5701952--5702035 Score: 98
Period size: 40 Copynumber: 2.1 Consensus size: 40
5701942 AATTTATTAC
* * *
5701952 TTCAGTAAATTCACAGTTCAA-TACAGTACACATAACAATA
1 TTCAATAAATTCACAATTCAACT-CAGTACACAAAACAATA
* * *
5701992 TTCAATAACTTCACAATTGAACTCAGTACTCAAAACAATA
1 TTCAATAAATTCACAATTCAACTCAGTACACAAAACAATA
5702032 TTCA
1 TTCA
5702036 GTATTCCATA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
40 36 0.97
41 1 0.03
ACGTcount: A:0.44, C:0.21, G:0.06, T:0.29
Consensus pattern (40 bp):
TTCAATAAATTCACAATTCAACTCAGTACACAAAACAATA
Found at i:5705513 original size:19 final size:19
Alignment explanation
Indices: 5705489--5705527 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
5705479 AATTATTTTT
5705489 CACATTTGATTTGAAATGA
1 CACATTTGATTTGAAATGA
5705508 CACATTTGATTTGAAATGA
1 CACATTTGATTTGAAATGA
5705527 C
1 C
5705528 TAAAAGAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (19 bp):
CACATTTGATTTGAAATGA
Found at i:5714664 original size:24 final size:24
Alignment explanation
Indices: 5714603--5714718 Score: 155
Period size: 24 Copynumber: 4.9 Consensus size: 24
5714593 TACTTAGACA
* *
5714603 ATTTGCCGTCAATTCATCATTTAC
1 ATTTTCCGTCAATTCATCCTTTAC
* *
5714627 A-TTACCGTCGATTCATCCTTTAC
1 ATTTTCCGTCAATTCATCCTTTAC
* *
5714650 ATTTTCCGTCAATTCCTCATTTAC
1 ATTTTCCGTCAATTCATCCTTTAC
*
5714674 ATTTTTCGTCAATTCATCCTTTAC
1 ATTTTCCGTCAATTCATCCTTTAC
5714698 A-TTTCCGTCAATTCATCCTTT
1 ATTTTCCGTCAATTCATCCTTT
5714719 CCCAATAATG
Statistics
Matches: 80, Mismatches: 11, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
23 39 0.49
24 41 0.51
ACGTcount: A:0.22, C:0.28, G:0.06, T:0.45
Consensus pattern (24 bp):
ATTTTCCGTCAATTCATCCTTTAC
Found at i:5714703 original size:47 final size:46
Alignment explanation
Indices: 5714603--5714714 Score: 161
Period size: 47 Copynumber: 2.4 Consensus size: 46
5714593 TACTTAGACA
*
5714603 ATTTGCCGTCAATTCATCATTTACATTACCGTCGATTCATCCTTTAC
1 ATTT-CCGTCAATTCATCATTTACATTACCGTCAATTCATCCTTTAC
* **
5714650 ATTTTCCGTCAATTCCTCATTTACATTTTTCGTCAATTCATCCTTTAC
1 A-TTTCCGTCAATTCATCATTTACA-TTACCGTCAATTCATCCTTTAC
5714698 ATTTCCGTCAATTCATC
1 ATTTCCGTCAATTCATC
5714715 CTTTCCCAAT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
47 35 0.60
48 23 0.40
ACGTcount: A:0.22, C:0.28, G:0.06, T:0.44
Consensus pattern (46 bp):
ATTTCCGTCAATTCATCATTTACATTACCGTCAATTCATCCTTTAC
Found at i:5721699 original size:21 final size:21
Alignment explanation
Indices: 5721673--5721713 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
5721663 AGACGAGCAA
* *
5721673 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
5721694 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
5721714 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:5741079 original size:44 final size:44
Alignment explanation
Indices: 5741016--5741125 Score: 202
Period size: 44 Copynumber: 2.5 Consensus size: 44
5741006 TTTGAGTACT
*
5741016 TCTGATCAGTGACAAGTGATAAGTGGTAGTTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
5741060 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
*
5741104 TCTGATCAGTGATAAGTGATAA
1 TCTGATCAGTGACAAGTGATAA
5741126 ATGTGATCCG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
44 64 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.33
Consensus pattern (44 bp):
TCTGATCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTA
Found at i:5744800 original size:11 final size:11
Alignment explanation
Indices: 5744786--5744814 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
5744776 ATAGAAGAGA
5744786 AGAAACAGGGG
1 AGAAACAGGGG
5744797 AGAAACAGGGG
1 AGAAACAGGGG
5744808 AGAAACA
1 AGAAACA
5744815 AGAAAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.10, G:0.38, T:0.00
Consensus pattern (11 bp):
AGAAACAGGGG
Found at i:5745483 original size:3 final size:3
Alignment explanation
Indices: 5745469--5745515 Score: 67
Period size: 3 Copynumber: 15.7 Consensus size: 3
5745459 GTGAGGTAAG
* * *
5745469 TAT TAG TAT TAT TAT TAG TAT TAT TAT TAG TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
5745516 AGATGAGTGG
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:5745486 original size:12 final size:12
Alignment explanation
Indices: 5745469--5745515 Score: 85
Period size: 12 Copynumber: 3.9 Consensus size: 12
5745459 GTGAGGTAAG
5745469 TATTAGTATTAT
1 TATTAGTATTAT
5745481 TATTAGTATTAT
1 TATTAGTATTAT
5745493 TATTAGTATTAT
1 TATTAGTATTAT
*
5745505 TATTATTATTA
1 TATTAGTATTA
5745516 AGATGAGTGG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (12 bp):
TATTAGTATTAT
Found at i:5761616 original size:29 final size:30
Alignment explanation
Indices: 5761557--5761614 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
5761547 TCCGAGCCTT
*
5761557 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
5761587 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
5761615 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:5762014 original size:50 final size:50
Alignment explanation
Indices: 5761939--5762181 Score: 369
Period size: 50 Copynumber: 4.8 Consensus size: 50
5761929 ATTTGGGTAA
* *
5761939 AGAGGTCCCATGTAAGACTATGTCTGGGACATGGTATTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
5761989 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
*
5762039 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
5762089 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCAACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
** *
5762139 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
5762182 TGTTATTATC
Statistics
Matches: 175, Mismatches: 17, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
50 141 0.81
51 34 0.19
ACGTcount: A:0.26, C:0.22, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:5765369 original size:23 final size:23
Alignment explanation
Indices: 5765340--5765438 Score: 153
Period size: 23 Copynumber: 4.3 Consensus size: 23
5765330 AGTGTTATTG
*
5765340 ATCAGTGGTAGCTTCGGCTACGT
1 ATCAGTGGTAGCTTCGGCTACAT
*
5765363 TTCAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
*
5765386 AACAGTGGTAGCTTCGGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
* *
5765409 TTCAGTGGTAGCTTCAGCTACAT
1 ATCAGTGGTAGCTTCGGCTACAT
5765432 ATCAGTG
1 ATCAGTG
5765439 TGGCACTATT
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 68 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (23 bp):
ATCAGTGGTAGCTTCGGCTACAT
Found at i:5770404 original size:23 final size:23
Alignment explanation
Indices: 5770377--5770432 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
5770367 AATTTAGTAT
5770377 ATTGAACAAAATAAACTAATTAA
1 ATTGAACAAAATAAACTAATTAA
** *
5770400 ATTGAACATGA-AAACTGATTAA
1 ATTGAACAAAATAAACTAATTAA
*
5770422 ATCGAA-AAAAT
1 ATTGAACAAAAT
5770433 TTGGCTTTTT
Statistics
Matches: 26, Mismatches: 6, Indels: 3
0.74 0.17 0.09
Matches are distributed among these distances:
21 2 0.08
22 15 0.58
23 9 0.35
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.25
Consensus pattern (23 bp):
ATTGAACAAAATAAACTAATTAA
Found at i:5777088 original size:15 final size:16
Alignment explanation
Indices: 5777068--5777108 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
5777058 TTTCACTCGC
5777068 TTTGTTTCATTTC-AT
1 TTTGTTTCATTTCGAT
*
5777083 TTTGTTTTATTTCTGAT
1 TTTGTTTCATTTC-GAT
5777100 TTT-TTTCAT
1 TTTGTTTCAT
5777109 GTTAATTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 12 0.55
16 5 0.23
17 5 0.23
ACGTcount: A:0.12, C:0.10, G:0.07, T:0.71
Consensus pattern (16 bp):
TTTGTTTCATTTCGAT
Found at i:5777935 original size:41 final size:41
Alignment explanation
Indices: 5777889--5777971 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
5777879 AATCACTTCC
5777889 TTTCTTTTTGGATCATTTAAAATGTTCTTGCATGGTTTTGA
1 TTTCTTTTTGGATCATTTAAAATGTTCTTGCATGGTTTTGA
5777930 TTTCTTTTTGGATCATTTAAAATGTTCTTGCATGGTTTTGA
1 TTTCTTTTTGGATCATTTAAAATGTTCTTGCATGGTTTTGA
5777971 T
1 T
5777972 GATGACAACA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.19, C:0.10, G:0.17, T:0.54
Consensus pattern (41 bp):
TTTCTTTTTGGATCATTTAAAATGTTCTTGCATGGTTTTGA
Found at i:5795457 original size:16 final size:18
Alignment explanation
Indices: 5795436--5795469 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
5795426 ATTTTCATTT
5795436 TATTA-TTAA-AAAATTA
1 TATTATTTAATAAAATTA
5795452 TATTATTTAATAAAATTA
1 TATTATTTAATAAAATTA
5795470 AAAAAAACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.31
17 4 0.25
18 7 0.44
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (18 bp):
TATTATTTAATAAAATTA
Found at i:5802432 original size:18 final size:19
Alignment explanation
Indices: 5802409--5802448 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 19
5802399 ATCGTTTCTC
*
5802409 ATTATCCATTAAT-TAAAT
1 ATTATCAATTAATCTAAAT
*
5802427 ATTATCAATTCATCTAAAT
1 ATTATCAATTAATCTAAAT
5802446 ATT
1 ATT
5802449 TAATCCAATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 11 0.58
19 8 0.42
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (19 bp):
ATTATCAATTAATCTAAAT
Found at i:5810878 original size:34 final size:33
Alignment explanation
Indices: 5810840--5810939 Score: 90
Period size: 34 Copynumber: 3.2 Consensus size: 33
5810830 CTAAACACAA
*
5810840 TAATTTATAACTTAATCCTAAATTACTAATAAAT
1 TAATTTATAAC-TAATCCTAAATTACTAACAAAT
*
5810874 TAATTT-TAA--AA---T-AATTACAAACACAA-
1 TAATTTATAACTAATCCTAAATTACTAACA-AAT
*
5810900 AAATTTATAACATAATCCTAAATTACTAACAAAT
1 TAATTTATAAC-TAATCCTAAATTACTAACAAAT
5810934 TAATTT
1 TAATTT
5810940 TAAAATGATT
Statistics
Matches: 51, Mismatches: 5, Indels: 20
0.67 0.07 0.26
Matches are distributed among these distances:
26 14 0.27
27 6 0.12
30 4 0.08
33 6 0.12
34 21 0.41
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (33 bp):
TAATTTATAACTAATCCTAAATTACTAACAAAT
Found at i:5810925 original size:60 final size:60
Alignment explanation
Indices: 5810832--5810950 Score: 202
Period size: 60 Copynumber: 2.0 Consensus size: 60
5810822 ATATTAAACT
* * *
5810832 AAACACAATAATTTATAACTTAATCCTAAATTACTAATAAATTAATTTTAAAATAATTAC
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
*
5810892 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATGATTA
1 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTA
5810951 TAAAAAGGAA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.53, C:0.12, G:0.01, T:0.34
Consensus pattern (60 bp):
AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTTTAAAATAATTAC
Found at i:5811063 original size:23 final size:22
Alignment explanation
Indices: 5811037--5811105 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 22
5811027 TAAAACAATA
5811037 TATTACATTTTTTCTTTCTTTCT
1 TATT-CATTTTTTCTTTCTTTCT
*
5811060 TATTC-TTATTCTTCTTTTTTTCT
1 TATTCATT-TT-TTCTTTCTTTCT
*
5811083 T-CTCATTTCTTTCTTTTCTTTCT
1 TATTCATTT-TTTC-TTTCTTTCT
5811106 CTCTTCCGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 10
0.75 0.06 0.20
Matches are distributed among these distances:
21 2 0.05
22 9 0.24
23 27 0.71
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (22 bp):
TATTCATTTTTTCTTTCTTTCT
Found at i:5811106 original size:20 final size:19
Alignment explanation
Indices: 5811049--5811107 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
5811039 TTACATTTTT
5811049 TCTTTCTTTCTTATTCTTAT-
1 TCTTTCTTTCTT-TTCTT-TC
5811069 TC-TTCTTT-TTTTC-TTC
1 TCTTTCTTTCTTTTCTTTC
5811085 TCATTTCTTTCTTTTCTTTC
1 TC-TTTCTTTCTTTTCTTTC
5811105 TCT
1 TCT
5811108 CTTCCGGATG
Statistics
Matches: 34, Mismatches: 0, Indels: 11
0.76 0.00 0.24
Matches are distributed among these distances:
15 1 0.03
16 3 0.09
17 3 0.09
18 8 0.24
19 12 0.35
20 7 0.21
ACGTcount: A:0.05, C:0.24, G:0.00, T:0.71
Consensus pattern (19 bp):
TCTTTCTTTCTTTTCTTTC
Found at i:5811388 original size:16 final size:17
Alignment explanation
Indices: 5811369--5811404 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
5811359 ATAACAAATT
*
5811369 AATATTTT-ATTTAAAA
1 AATATTTTAATATAAAA
5811385 AATATTTTAATATAAAA
1 AATATTTTAATATAAAA
5811402 AAT
1 AAT
5811405 TGATTCACGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATATTTTAATATAAAA
Found at i:5815312 original size:5 final size:5
Alignment explanation
Indices: 5815302--5815332 Score: 53
Period size: 5 Copynumber: 6.2 Consensus size: 5
5815292 TTAAACTATA
*
5815302 CTCTC CTCTC CTCTC CCCTC CTCTC CTCTC C
1 CTCTC CTCTC CTCTC CTCTC CTCTC CTCTC C
5815333 AAATAAGGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (5 bp):
CTCTC
Found at i:5831863 original size:22 final size:21
Alignment explanation
Indices: 5831838--5831892 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
5831828 TATTATATAC
* *
5831838 TAAAAGCAATTATATTTTAAAA
1 TAAAAACAATTAAATTTT-AAA
*
5831860 TAAAAATAAATTAAATTTTAAA
1 TAAAAA-CAATTAAATTTTAAA
5831882 TAAAAACAATT
1 TAAAAACAATT
5831893 TTGAAATAAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 4 0.14
22 14 0.50
23 10 0.36
ACGTcount: A:0.60, C:0.04, G:0.02, T:0.35
Consensus pattern (21 bp):
TAAAAACAATTAAATTTTAAA
Found at i:5831871 original size:23 final size:22
Alignment explanation
Indices: 5831845--5831887 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
5831835 TACTAAAAGC
*
5831845 AATTATATTTTAAAATAAAAATA
1 AATTAAATTTT-AAATAAAAATA
5831868 AATTAAATTTTAAATAAAAA
1 AATTAAATTTTAAATAAAAA
5831888 CAATTTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
AATTAAATTTTAAATAAAAATA
Found at i:5831882 original size:16 final size:18
Alignment explanation
Indices: 5831863--5831905 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 18
5831853 TTTAAAATAA
*
5831863 AAATAAATTA-AATTTT-
1 AAATAAATAACAATTTTG
5831879 AAATAAA-AACAATTTTG
1 AAATAAATAACAATTTTG
5831896 AAATAAATAA
1 AAATAAATAA
5831906 TTATTTTTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 1 0.04
16 13 0.57
17 7 0.30
18 2 0.09
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (18 bp):
AAATAAATAACAATTTTG
Found at i:5843748 original size:23 final size:21
Alignment explanation
Indices: 5843695--5843749 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
5843685 ATTTATTTCA
*
5843695 AATTGTTTTTATTTAAAATTT
1 AATTGTTTTTATTTAAAATAT
*
5843716 AATTTATTTTTATTTTAAAATAT
1 AA-TTGTTTTTA-TTTAAAATAT
*
5843739 AATTGCTTTTA
1 AATTGTTTTTA
5843750 GTATATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.07
22 15 0.54
23 11 0.39
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (21 bp):
AATTGTTTTTATTTAAAATAT
Found at i:5844153 original size:18 final size:18
Alignment explanation
Indices: 5844115--5844153 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
5844105 ATCTACTTAA
*
5844115 TATTTAAATAATTTTGGT
1 TATTTAAATAATTTTGAT
* *
5844133 TATTTTAATAATTTTTAT
1 TATTTAAATAATTTTGAT
5844151 TAT
1 TAT
5844154 ATTCACTTCC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (18 bp):
TATTTAAATAATTTTGAT
Found at i:5890313 original size:20 final size:20
Alignment explanation
Indices: 5890262--5890302 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
5890252 AACAAAAATA
*
5890262 AAAAGAAAGAACGAAAGAAAG
1 AAAAGAAA-AAGGAAAGAAAG
5890283 AAAAGAAAAAGGAAAGAAAG
1 AAAAGAAAAAGGAAAGAAAG
5890303 TAAGGAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.73, C:0.02, G:0.24, T:0.00
Consensus pattern (20 bp):
AAAAGAAAAAGGAAAGAAAG
Found at i:5890777 original size:41 final size:39
Alignment explanation
Indices: 5890730--5890842 Score: 131
Period size: 37 Copynumber: 2.9 Consensus size: 39
5890720 TTCGACTTTG
5890730 AGTCGATGAGACACTGGATGTCAATTTACTACTTCGGATTA
1 AGTCGATGAGACACTGGATGTCAATTTA-TACTTCGG-TTA
* * * * *
5890771 ATTCGATGAGGCACTAGATGCCAA-TT-TACTTCGGTTT
1 AGTCGATGAGACACTGGATGTCAATTTATACTTCGGTTA
*
5890808 AGTCGATGAGACACTGGGTGTCAATTTATTACTTC
1 AGTCGATGAGACACTGGATGTCAATTTA-TACTTC
5890843 AAATTATTCA
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
37 21 0.36
38 10 0.17
40 8 0.14
41 20 0.34
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.34
Consensus pattern (39 bp):
AGTCGATGAGACACTGGATGTCAATTTATACTTCGGTTA
Found at i:5896817 original size:25 final size:24
Alignment explanation
Indices: 5896783--5896983 Score: 140
Period size: 25 Copynumber: 8.2 Consensus size: 24
5896773 ACACACCATC
* *
5896783 GCTCTTATGAGCGTCCCGATACTTG
1 GCTCTCATGAGCTTCCCGATA-TTG
* *
5896808 GCTCTCATGAGCTTCCCGTTATTTA
1 GCTCTCATGAGCTTCCCGATA-TTG
* * *
5896833 GCTCTTATGAGCATCTCGATATATG
1 GCTCTCATGAGCTTCCCGATAT-TG
* * *
5896858 GCTCTCATAAGCTTCTCGATTAATG
1 GCTCTCATGAGCTTCCCGA-TATTG
* *
5896883 GCTCT-TTGGAGCTTCCCAATATTG
1 GCTCTCAT-GAGCTTCCCGATATTG
* *
5896907 GTTCGCATGAGCTTCCCGA-ATTTG
1 GCTCTCATGAGCTTCCCGATA-TTG
* *
5896931 GCTCTCTTGAGCTTCCCAAT-TATG
1 GCTCTCATGAGCTTCCCGATAT-TG
*
5896955 GCTCGT-ATGAGCTTCCGGATAATTG
1 GCTC-TCATGAGCTTCCCGAT-ATTG
5896980 GCTC
1 GCTC
5896984 GCAAAATCTT
Statistics
Matches: 136, Mismatches: 30, Indels: 20
0.73 0.16 0.11
Matches are distributed among these distances:
23 2 0.01
24 54 0.40
25 77 0.57
26 3 0.02
ACGTcount: A:0.18, C:0.25, G:0.21, T:0.35
Consensus pattern (24 bp):
GCTCTCATGAGCTTCCCGATATTG
Found at i:5896920 original size:24 final size:23
Alignment explanation
Indices: 5896891--5896970 Score: 97
Period size: 24 Copynumber: 3.3 Consensus size: 23
5896881 TGGCTCTTTG
*
5896891 GAGCTTCCCAATATTGGTTCGCAT
1 GAGCTTCCCAAT-TTGGCTCGCAT
* *
5896915 GAGCTTCCCGAATTTGGCTCTCTT
1 GAGCTTCCC-AATTTGGCTCGCAT
*
5896939 GAGCTTCCCAATTATGGCTCGTAT
1 GAGCTTCCCAATT-TGGCTCGCAT
5896963 GAGCTTCC
1 GAGCTTCC
5896971 GGATAATTGG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
23 4 0.08
24 41 0.85
25 3 0.06
ACGTcount: A:0.17, C:0.28, G:0.21, T:0.34
Consensus pattern (23 bp):
GAGCTTCCCAATTTGGCTCGCAT
Found at i:5899855 original size:14 final size:14
Alignment explanation
Indices: 5899836--5899864 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
5899826 TCGAATAAGC
5899836 ATGTATATATATAT
1 ATGTATATATATAT
5899850 ATGTATATATATAT
1 ATGTATATATATAT
5899864 A
1 A
5899865 ATGCTAGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.07, T:0.48
Consensus pattern (14 bp):
ATGTATATATATAT
Done.