Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 130 of 199
Found at i:43528330 original size:23 final size:22
Alignment explanation
Indices: 43528303--43528350 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
43528293 ATTTATTTAA
*
43528303 TTATTT-TTTAGGTCATTAGGAAT
1 TTATTTCTTTA-GTAATTAGG-AT
43528326 TTATTTCTTTAGTAATTAGGAT
1 TTATTTCTTTAGTAATTAGGAT
43528348 TTA
1 TTA
43528351 ATCTTTGCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 5 0.22
23 14 0.61
24 4 0.17
ACGTcount: A:0.27, C:0.04, G:0.15, T:0.54
Consensus pattern (22 bp):
TTATTTCTTTAGTAATTAGGAT
Found at i:43529994 original size:14 final size:14
Alignment explanation
Indices: 43529975--43530003 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
43529965 TAATGTTATA
43529975 TTTTAATAATTCAT
1 TTTTAATAATTCAT
43529989 TTTTAATAATTCAT
1 TTTTAATAATTCAT
43530003 T
1 T
43530004 AATAAAAAGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (14 bp):
TTTTAATAATTCAT
Found at i:43531170 original size:13 final size:13
Alignment explanation
Indices: 43531152--43531178 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
43531142 CACGTATAAT
43531152 ACATAACTTGAAA
1 ACATAACTTGAAA
43531165 ACATAACTTGAAA
1 ACATAACTTGAAA
43531178 A
1 A
43531179 TAAAGTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
ACATAACTTGAAA
Found at i:43534717 original size:20 final size:20
Alignment explanation
Indices: 43534668--43534717 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
43534658 ATTTGCATTT
*
43534668 CGGTGCCTCTGTATACACTT
1 CGGTGCCTCTGTATACACTA
* *
43534688 CAGTGTCTCTGT-TCACACTA
1 CGGTGCCTCTGTAT-ACACTA
43534708 CGGTGCCTCT
1 CGGTGCCTCT
43534718 AATTGCACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.14, C:0.32, G:0.20, T:0.34
Consensus pattern (20 bp):
CGGTGCCTCTGTATACACTA
Found at i:43539618 original size:15 final size:16
Alignment explanation
Indices: 43539600--43539633 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
43539590 AACTTTTAAA
*
43539600 TAATT-TTTTTGTATT
1 TAATTCTTTTAGTATT
43539615 TAATTCTTTTAGTATT
1 TAATTCTTTTAGTATT
43539631 TAA
1 TAA
43539634 GAATCAAGGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (16 bp):
TAATTCTTTTAGTATT
Found at i:43544798 original size:6 final size:6
Alignment explanation
Indices: 43544787--43544814 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
43544777 GGCGTGACAC
43544787 CCCCCT CCCCCT CCCCCT CCCCCT CCCC
1 CCCCCT CCCCCT CCCCCT CCCCCT CCCC
43544815 TTTCTCTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.86, G:0.00, T:0.14
Consensus pattern (6 bp):
CCCCCT
Found at i:43554576 original size:39 final size:41
Alignment explanation
Indices: 43554517--43554606 Score: 130
Period size: 39 Copynumber: 2.2 Consensus size: 41
43554507 AAAAATTATA
* * * *
43554517 TTTAATATAATAAAATATTTATTATATTT-A-TTTGTGTTT
1 TTTAATATAAGAAAACATTTATTATATTTAAGGTAGTGTTT
43554556 TTTAATATAAGAAAACATTTATTATATTTAAGGTAGTGTTT
1 TTTAATATAAGAAAACATTTATTATATTTAAGGTAGTGTTT
43554597 TTTAATATAA
1 TTTAATATAA
43554607 ATATTTTTAA
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 27 0.60
40 1 0.02
41 17 0.38
ACGTcount: A:0.39, C:0.01, G:0.08, T:0.52
Consensus pattern (41 bp):
TTTAATATAAGAAAACATTTATTATATTTAAGGTAGTGTTT
Found at i:43562218 original size:21 final size:21
Alignment explanation
Indices: 43562194--43562235 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
43562184 TTTACCTAAG
*
43562194 ATATGAATTGGATTGAATTGA
1 ATATGAATTGGATTAAATTGA
*
43562215 ATATGAATTGTATTAAATTGA
1 ATATGAATTGGATTAAATTGA
43562236 GCTAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (21 bp):
ATATGAATTGGATTAAATTGA
Found at i:43563096 original size:18 final size:18
Alignment explanation
Indices: 43563062--43563096 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
43563052 AAAGATGAAA
*
43563062 TAATAAAATATGAAAAAT
1 TAATAAAATATAAAAAAT
*
43563080 TAATTAAATATAAAAAA
1 TAATAAAATATAAAAAA
43563097 ATTATCATTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (18 bp):
TAATAAAATATAAAAAAT
Found at i:43564146 original size:25 final size:24
Alignment explanation
Indices: 43564104--43564200 Score: 77
Period size: 25 Copynumber: 3.8 Consensus size: 24
43564094 TAGCTCTTAT
* *
43564104 GAGCGTCCCGATATAAGGCTCTCCA
1 GAGCTTCCTGATA-AAGGCTCTCCA
* *
43564129 GAGCTTTCTGATTAAAGGCTCTTTCA
1 GAGCTTCCTGA-TAAAGGCTC-TCCA
* * *
43564155 TGAGCTTCCAGACTAATGGCTCTCTA
1 -GAGCTTCCTGA-TAAAGGCTCTCCA
*
43564181 GAGCTTCCTGATAATGGCTC
1 GAGCTTCCTGATAAAGGCTC
43564201 GCTTGAACTT
Statistics
Matches: 58, Mismatches: 11, Indels: 7
0.76 0.14 0.09
Matches are distributed among these distances:
24 9 0.16
25 25 0.43
26 7 0.12
27 17 0.29
ACGTcount: A:0.23, C:0.26, G:0.22, T:0.30
Consensus pattern (24 bp):
GAGCTTCCTGATAAAGGCTCTCCA
Found at i:43564199 original size:24 final size:24
Alignment explanation
Indices: 43564116--43564235 Score: 86
Period size: 24 Copynumber: 4.9 Consensus size: 24
43564106 GCGTCCCGAT
* *
43564116 ATAA-GGCTCTCCAGAGCTTTCTG
1 ATAATGGCTCTCTAGAGCTTCCTG
* * *
43564139 ATTAAAGGCTCTTTCATGAGCTTCCAG
1 A-TAATGGCTCTCT-A-GAGCTTCCTG
43564166 ACTAATGGCTCTCTAGAGCTTCCTG
1 A-TAATGGCTCTCTAGAGCTTCCTG
* * *
43564191 ATAATGGCTCGCTTGAACTTCCCT-
1 ATAATGGCTCTCTAGAGCTT-CCTG
43564215 AT-ATGGCTCT-TATGAGCTTCC
1 ATAATGGCTCTCTA-GAGCTTCC
43564236 CGTTATACAG
Statistics
Matches: 77, Mismatches: 14, Indels: 13
0.74 0.13 0.12
Matches are distributed among these distances:
22 3 0.04
23 13 0.17
24 21 0.27
25 19 0.25
26 2 0.03
27 19 0.25
ACGTcount: A:0.22, C:0.26, G:0.19, T:0.33
Consensus pattern (24 bp):
ATAATGGCTCTCTAGAGCTTCCTG
Found at i:43564316 original size:27 final size:25
Alignment explanation
Indices: 43564181--43564320 Score: 110
Period size: 25 Copynumber: 5.7 Consensus size: 25
43564171 TGGCTCTCTA
* * **
43564181 GAGCTTCCTGATA-ATGGCTCGCTT
1 GAGCTTCCCGTTATATGGCTCGAAT
* **
43564205 GAACTTCCC--TATATGGCTCTTAT
1 GAGCTTCCCGTTATATGGCTCGAAT
** *
43564228 GAGCTTCCCGTTATACAGCTTGAAT
1 GAGCTTCCCGTTATATGGCTCGAAT
*
43564253 GAGCTTCCTGTTATATGGCTC-ACAT
1 GAGCTTCCCGTTATATGGCTCGA-AT
*
43564278 GAGCTTCCCGTTATATGGCTCGAGAGA
1 GAGCTTCCCGTTATATGGCTCGA-A-T
43564305 GAGCTTCCCGTT-TATG
1 GAGCTTCCCGTTATATG
43564321 TGCTTTTATG
Statistics
Matches: 92, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
22 2 0.02
23 16 0.17
24 8 0.09
25 48 0.52
26 6 0.07
27 12 0.13
ACGTcount: A:0.20, C:0.24, G:0.22, T:0.34
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCGAAT
Found at i:43565256 original size:13 final size:13
Alignment explanation
Indices: 43565238--43565276 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
43565228 ATTTCGTCCA
43565238 CACAGGCGTGTGT
1 CACAGGCGTGTGT
*
43565251 CACAGGTGTGTGT
1 CACAGGCGTGTGT
* *
43565264 CTCAGCCGTGTGT
1 CACAGGCGTGTGT
43565277 GTCCTAGCAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.13, C:0.23, G:0.36, T:0.28
Consensus pattern (13 bp):
CACAGGCGTGTGT
Found at i:43566624 original size:14 final size:14
Alignment explanation
Indices: 43566605--43566631 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
43566595 GCTACCATTT
43566605 TACTATTTTGTTGC
1 TACTATTTTGTTGC
43566619 TACTATTTTGTTG
1 TACTATTTTGTTG
43566632 TTATTGTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.11, G:0.15, T:0.59
Consensus pattern (14 bp):
TACTATTTTGTTGC
Found at i:43566699 original size:30 final size:30
Alignment explanation
Indices: 43566665--43566727 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
43566655 ACTTATTTTA
*
43566665 TTGTTCATTTTGTTATTATTTTAAAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
*
43566695 TTGTTAATTTTGTTATTATTTTAGAGGCAT
1 TTGTTAATTTTGTTATTATTTTAAAGGCAT
43566725 TTG
1 TTG
43566728 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.22, C:0.05, G:0.16, T:0.57
Consensus pattern (30 bp):
TTGTTAATTTTGTTATTATTTTAAAGGCAT
Found at i:43569311 original size:20 final size:20
Alignment explanation
Indices: 43569283--43569322 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
43569273 ACAAAATCGG
* *
43569283 AAACTTAGAAAATTTTCAAA
1 AAACATAGAAAAATTTCAAA
43569303 AAACATAGAAAAATTTCAAA
1 AAACATAGAAAAATTTCAAA
43569323 GCTACAGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.60, C:0.10, G:0.05, T:0.25
Consensus pattern (20 bp):
AAACATAGAAAAATTTCAAA
Found at i:43572555 original size:25 final size:25
Alignment explanation
Indices: 43572521--43572602 Score: 87
Period size: 24 Copynumber: 3.4 Consensus size: 25
43572511 GAGCCATAAA
43572521 CGGGAAGCTCAAGAGAGCTAAATAT
1 CGGGAAGCTCAAGAGAGCTAAATAT
**
43572546 CGGGAAGCTCTGGAGAGCTAAA-AT
1 CGGGAAGCTCAAGAGAGCTAAATAT
** * * *
43572570 CGAAAAGCTCATGCGAGC-CAATAT
1 CGGGAAGCTCAAGAGAGCTAAATAT
43572594 CGGGAAGCT
1 CGGGAAGCT
43572603 TGTGAGAGCC
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
23 2 0.04
24 24 0.52
25 20 0.43
ACGTcount: A:0.35, C:0.20, G:0.29, T:0.16
Consensus pattern (25 bp):
CGGGAAGCTCAAGAGAGCTAAATAT
Found at i:43572601 original size:24 final size:24
Alignment explanation
Indices: 43572420--43572602 Score: 102
Period size: 25 Copynumber: 7.5 Consensus size: 24
43572410 CGAGTATGTA
* * *
43572420 ATCGGGAAGCTCTTTCGAGCCATGT
1 ATCGGGAAGCTCATGCGAGCCA-AT
* * *
43572445 AACGAGAAGCTCATGTGAGCCATAT
1 ATCGGGAAGCTCATGCGAGCCA-AT
* * *
43572470 AAT-GGGAAGCCCTTGTGAGCCAATT
1 -ATCGGGAAGCTCATGCGAGCCAA-T
* *
43572495 ATCAGGAAGCTCATACGAGCC-AT
1 ATCGGGAAGCTCATGCGAGCCAAT
* * * *
43572518 AAACGGGAAGCTCAAGAGAGCTAAAT
1 -ATCGGGAAGCTCATGCGAGC-CAAT
* * *
43572544 ATCGGGAAGCTC-TGGAGAGCTAAA
1 ATCGGGAAGCTCAT-GCGAGCCAAT
**
43572568 ATCGAAAAGCTCATGCGAGCCAAT
1 ATCGGGAAGCTCATGCGAGCCAAT
43572592 ATCGGGAAGCT
1 ATCGGGAAGCT
43572603 TGTGAGAGCC
Statistics
Matches: 118, Mismatches: 32, Indels: 17
0.71 0.19 0.10
Matches are distributed among these distances:
23 1 0.01
24 47 0.40
25 67 0.57
26 3 0.03
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (24 bp):
ATCGGGAAGCTCATGCGAGCCAAT
Found at i:43572611 original size:24 final size:24
Alignment explanation
Indices: 43572541--43572613 Score: 67
Period size: 24 Copynumber: 3.0 Consensus size: 24
43572531 AAGAGAGCTA
*
43572541 AATATCGGGAAGCTCTG-GAGAGCT
1 AATATCGGGAAGCT-TGTGAGAGCC
* ** ** *
43572565 AAAATCGAAAAGCTCATGCGAGCC
1 AATATCGGGAAGCTTGTGAGAGCC
43572589 AATATCGGGAAGCTTGTGAGAGCC
1 AATATCGGGAAGCTTGTGAGAGCC
43572613 A
1 A
43572614 TGTAACGGGA
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
24 35 1.00
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.18
Consensus pattern (24 bp):
AATATCGGGAAGCTTGTGAGAGCC
Found at i:43573002 original size:21 final size:21
Alignment explanation
Indices: 43572978--43573019 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
43572968 TGAATTTAAC
* *
43572978 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATACATAT
*
43572999 TCAATTCAATCCAATACATAT
1 TCAATTCAATACAATACATAT
43573020 ATTTGGAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.43, C:0.19, G:0.00, T:0.38
Consensus pattern (21 bp):
TCAATTCAATACAATACATAT
Found at i:43577460 original size:29 final size:31
Alignment explanation
Indices: 43577394--43577471 Score: 85
Period size: 31 Copynumber: 2.6 Consensus size: 31
43577384 ACAAATTCAT
*
43577394 GTACCAAATCAGACAAAAAAATAGAGATTAG
1 GTACCAAATTAGACAAAAAAATAGAGATTAG
**
43577425 GTACCAAATTAGACCCAAAAA-A-AGATT-G
1 GTACCAAATTAGACAAAAAAATAGAGATTAG
43577453 AGTACCAAATTA-A-AAAAAA
1 -GTACCAAATTAGACAAAAAA
43577472 TGTCAACTTC
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
27 4 0.10
28 2 0.05
29 16 0.39
30 1 0.02
31 18 0.44
ACGTcount: A:0.56, C:0.14, G:0.13, T:0.17
Consensus pattern (31 bp):
GTACCAAATTAGACAAAAAAATAGAGATTAG
Found at i:43577524 original size:32 final size:31
Alignment explanation
Indices: 43577453--43577589 Score: 128
Period size: 32 Copynumber: 4.5 Consensus size: 31
43577443 AAAAAGATTG
*
43577453 AGTACCAAATTA-AAAAAAATGTCAACTTC-
1 AGTACCAAATTAGAAAAAAATGTCAAGTTCA
* *
43577482 AGATATCAAATTAGGGAAAAAATGTCAAGTTCA
1 AG-TACCAAATTA-GAAAAAAATGTCAAGTTCA
*
43577515 AGTACCAAATTGGACAAAAAAATGT--A--T-A
1 AGTACCAAATT--AGAAAAAAATGTCAAGTTCA
*
43577543 AGTACCAAATTAGAAAAAAAAGTCAAGTTCA
1 AGTACCAAATTAGAAAAAAATGTCAAGTTCA
*
43577574 GGTACCAAA-TAGAAAA
1 AGTACCAAATTAGAAAA
43577590 TTAAACCAAA
Statistics
Matches: 88, Mismatches: 9, Indels: 21
0.75 0.08 0.18
Matches are distributed among these distances:
26 10 0.11
28 13 0.15
29 3 0.03
30 17 0.19
31 10 0.11
32 23 0.26
33 11 0.12
34 1 0.01
ACGTcount: A:0.53, C:0.12, G:0.14, T:0.21
Consensus pattern (31 bp):
AGTACCAAATTAGAAAAAAATGTCAAGTTCA
Found at i:43584582 original size:29 final size:30
Alignment explanation
Indices: 43584550--43584610 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 30
43584540 TTGTGTTAGG
*
43584550 CAAAAAAAAGA-TTATTTTT-AAAAATATTA
1 CAAAAAAAAGACTAATTTTTGAAAAAT-TTA
*
43584579 C-AAAAATAGACTAATTTTTGAAAAATTTA
1 CAAAAAAAAGACTAATTTTTGAAAAATTTA
43584608 CAA
1 CAA
43584611 GAATAAGCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
28 8 0.30
29 12 0.44
30 7 0.26
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.33
Consensus pattern (30 bp):
CAAAAAAAAGACTAATTTTTGAAAAATTTA
Found at i:43585288 original size:16 final size:15
Alignment explanation
Indices: 43585258--43585286 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
43585248 ATTGATCTCT
43585258 TTTTTTAAATATTTA
1 TTTTTTAAATATTTA
43585273 TTTTTTAAATATTT
1 TTTTTTAAATATTT
43585287 TACTATACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTTTAAATATTTA
Found at i:43587113 original size:22 final size:21
Alignment explanation
Indices: 43587066--43587120 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 21
43587056 TGCACTAATG
*
43587066 AACAGAGAGCATAAAGTGCTA
1 AACAGAGAGCACAAAGTGCTA
* *
43587087 TACAGAGAGCACATATGTGCTA
1 AACAGAGAGCACA-AAGTGCTA
*
43587109 AACAGAAAGCAC
1 AACAGAGAGCAC
43587121 TGACGTGCCA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 11 0.39
22 17 0.61
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.15
Consensus pattern (21 bp):
AACAGAGAGCACAAAGTGCTA
Found at i:43587128 original size:22 final size:22
Alignment explanation
Indices: 43587081--43587128 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
43587071 AGAGCATAAA
* * *
43587081 GTGCTATACAGAGAGCACATAT
1 GTGCTAAACAGAAAGCACATAC
43587103 GTGCTAAACAGAAAGCAC-TGAC
1 GTGCTAAACAGAAAGCACAT-AC
43587125 GTGC
1 GTGC
43587129 CAATAATTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (22 bp):
GTGCTAAACAGAAAGCACATAC
Found at i:43588278 original size:8 final size:8
Alignment explanation
Indices: 43588265--43588296 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
43588255 TTTGTTATAT
43588265 ATATAATA
1 ATATAATA
43588273 ATATAATA
1 ATATAATA
*
43588281 GTATAATA
1 ATATAATA
43588289 ATATAATA
1 ATATAATA
43588297 CAATAACATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:43588287 original size:16 final size:16
Alignment explanation
Indices: 43588266--43588296 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
43588256 TTGTTATATA
43588266 TATAATAATATAATAG
1 TATAATAATATAATAG
43588282 TATAATAATATAATA
1 TATAATAATATAATA
43588297 CAATAACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TATAATAATATAATAG
Found at i:43588302 original size:16 final size:16
Alignment explanation
Indices: 43588267--43588302 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
43588257 TGTTATATAT
**
43588267 ATAATAATATAATAGT
1 ATAATAATATAATACA
43588283 ATAATAATATAATACA
1 ATAATAATATAATACA
43588299 ATAA
1 ATAA
43588303 CATACTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.33
Consensus pattern (16 bp):
ATAATAATATAATACA
Found at i:43590753 original size:20 final size:19
Alignment explanation
Indices: 43590728--43590806 Score: 68
Period size: 20 Copynumber: 4.0 Consensus size: 19
43590718 ACGAGATTTG
43590728 CACTTCGGTGCCCCTGTATA
1 CACTTCGGTGCCCCTGT-TA
* * * * *
43590748 CACTTCTGTGTCTCTATTCG
1 CACTTCGGTGCCCCTGTT-A
*
43590768 CACTACGGTGCCCCTGTTTA
1 CACTTCGGTGCCCCTG-TTA
*
43590788 CACTTCAGTGCCCCTGTTA
1 CACTTCGGTGCCCCTGTTA
43590807 TGCATCCATG
Statistics
Matches: 44, Mismatches: 13, Indels: 5
0.71 0.21 0.08
Matches are distributed among these distances:
19 4 0.09
20 38 0.86
21 2 0.05
ACGTcount: A:0.14, C:0.34, G:0.18, T:0.34
Consensus pattern (19 bp):
CACTTCGGTGCCCCTGTTA
Found at i:43593019 original size:18 final size:18
Alignment explanation
Indices: 43592967--43593019 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
43592957 AATCGCGTCG
* *
43592967 TTCATTTCCAAAACATTA
1 TTCATTTACAAAACGTTA
*
43592985 TTCATTTACAAATCGTTA
1 TTCATTTACAAAACGTTA
43593003 TTCAATTT-CAAAACGTT
1 TTC-ATTTACAAAACGTT
43593020 TTCTTATTGC
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 26 0.87
19 4 0.13
ACGTcount: A:0.36, C:0.19, G:0.04, T:0.42
Consensus pattern (18 bp):
TTCATTTACAAAACGTTA
Found at i:43595934 original size:16 final size:17
Alignment explanation
Indices: 43595913--43595945 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
43595903 TTCCTAACCA
43595913 AATATTTCAT-ATAAAT
1 AATATTTCATCATAAAT
*
43595929 AATATTTTATCATAAAT
1 AATATTTCATCATAAAT
43595946 TTTTTTAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.06, G:0.00, T:0.45
Consensus pattern (17 bp):
AATATTTCATCATAAAT
Found at i:43599830 original size:35 final size:35
Alignment explanation
Indices: 43599791--43599879 Score: 124
Period size: 35 Copynumber: 2.5 Consensus size: 35
43599781 TACTTTTTGT
*
43599791 TTGGTGTGTTTCGGAGGGACTAGCTCTTTTGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
**
43599826 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
* * *
43599861 ATGGTGTATTTTGGAGGGA
1 TTGGTGTGTTTCGGAGGGA
43599880 TTGCATCATG
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
35 46 1.00
ACGTcount: A:0.16, C:0.11, G:0.35, T:0.38
Consensus pattern (35 bp):
TTGGTGTGTTTCGGAGGGACTAGCTCTTATGAGCA
Found at i:43604498 original size:41 final size:39
Alignment explanation
Indices: 43604453--43604578 Score: 130
Period size: 40 Copynumber: 3.2 Consensus size: 39
43604443 AGTGGCATTT
43604453 TTAGCGGCG-TTTGGATAAAAAACGCCGCTAAAGATTGAGCA
1 TTAGCGGCGCTTT--AT-AAAAACGCCGCTAAAGATTGAGCA
* * * *
43604494 TTAGCGGCGCTTTTCTAAAAATGCCGCTAAAGATCGAGTA
1 TTAGCGGCGC-TTTATAAAAACGCCGCTAAAGATTGAGCA
* * *
43604534 TTAGCGGCGCTTTATGGAAAACGCCGCTAAA-ACTAAGCA
1 TTAGCGGCGCTTTAT-AAAAACGCCGCTAAAGATTGAGCA
43604573 TTAGCG
1 TTAGCG
43604579 ATGATTTCCA
Statistics
Matches: 71, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
39 14 0.20
40 44 0.62
41 10 0.14
43 3 0.04
ACGTcount: A:0.32, C:0.20, G:0.25, T:0.24
Consensus pattern (39 bp):
TTAGCGGCGCTTTATAAAAACGCCGCTAAAGATTGAGCA
Found at i:43604704 original size:41 final size:41
Alignment explanation
Indices: 43604642--43604722 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
43604632 GCTTTTGGGG
43604642 CTTTAGCGGCTTTTTTGGGAAAGCGCCGCTAATGCTCAAGT
1 CTTTAGCGGCTTTTTTGGGAAAGCGCCGCTAATGCTCAAGT
43604683 CTTTAGCGGCGTTTTTT-GGAAAGCGCCGCTAATGCTCAAG
1 CTTTAGCGGC-TTTTTTGGGAAAGCGCCGCTAATGCTCAAG
43604723 GATTTAAAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
41 33 0.85
42 6 0.15
ACGTcount: A:0.20, C:0.22, G:0.27, T:0.31
Consensus pattern (41 bp):
CTTTAGCGGCTTTTTTGGGAAAGCGCCGCTAATGCTCAAGT
Found at i:43604978 original size:7 final size:7
Alignment explanation
Indices: 43604933--43605071 Score: 59
Period size: 7 Copynumber: 19.6 Consensus size: 7
43604923 GTGTTACCAT
*
43604933 TTTAAGG
1 TTTATGG
*
43604940 TTTTTGG
1 TTTATGG
*
43604947 ATTATGGG
1 TTTAT-GG
*
43604955 TTTAGGG
1 TTTATGG
*
43604962 GTTATGG
1 TTTATGG
*
43604969 TTTGTGG
1 TTTATGG
*
43604976 TTTACGG
1 TTTATGG
43604983 TTTATGG
1 TTTATGG
*
43604990 TTTAAAGG
1 TTT-ATGG
* *
43604998 -CTAGGG
1 TTTATGG
*
43605004 TTTAAGG
1 TTTATGG
*
43605011 TTTAAAGG
1 TTT-ATGG
43605019 -TTATGTG
1 TTTATG-G
* *
43605026 TTAAGGG
1 TTTATGG
43605033 TTTATGG
1 TTTATGG
*
43605040 TTTTAGGG
1 -TTTATGG
*
43605048 TTTA-AG
1 TTTATGG
43605054 TTTATGG
1 TTTATGG
*
43605061 TTTAAGG
1 TTTATGG
43605068 TTTA
1 TTTA
43605072 GATTAACTAG
Statistics
Matches: 97, Mismatches: 27, Indels: 16
0.69 0.19 0.11
Matches are distributed among these distances:
6 10 0.10
7 66 0.68
8 21 0.22
ACGTcount: A:0.20, C:0.01, G:0.32, T:0.47
Consensus pattern (7 bp):
TTTATGG
Found at i:43605037 original size:15 final size:15
Alignment explanation
Indices: 43605000--43605051 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
43604990 TTTAAAGGCT
*
43605000 AGGGTTTAAGGTTTA
1 AGGGTTTATGGTTTA
*
43605015 AAGG-TTAT-GTGTTA
1 AGGGTTTATGGT-TTA
*
43605029 AGGGTTTATGGTTTT
1 AGGGTTTATGGTTTA
43605044 AGGGTTTA
1 AGGGTTTA
43605052 AGTTTATGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
13 2 0.07
14 9 0.30
15 17 0.57
16 2 0.07
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.44
Consensus pattern (15 bp):
AGGGTTTATGGTTTA
Found at i:43605056 original size:21 final size:20
Alignment explanation
Indices: 43605032--43605071 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
43605022 TGTGTTAAGG
*
43605032 GTTTATGGTTTTAGGGTTTAA
1 GTTTATGG-TTTAAGGTTTAA
43605053 GTTTATGGTTTAAGGTTTA
1 GTTTATGGTTTAAGGTTTA
43605072 GATTAACTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.53
Consensus pattern (20 bp):
GTTTATGGTTTAAGGTTTAA
Found at i:43605070 original size:14 final size:14
Alignment explanation
Indices: 43604953--43605072 Score: 77
Period size: 14 Copynumber: 8.5 Consensus size: 14
43604943 TTGGATTATG
* *
43604953 GGTTTAGGGGTTAT
1 GGTTTAGGGTTTAA
*
43604967 GGTTT-GTGGTTTAC
1 GGTTTAG-GGTTTAA
*
43604981 GGTTTATGGTTTAAA
1 GGTTTAGGGTTT-AA
*
43604996 GG-CTAGGGTTTAA
1 GGTTTAGGGTTTAA
* *
43605009 GGTTTAAAGG-TTAT
1 GGTTT-AGGGTTTAA
* *
43605023 GTGTTAAGGGTTTAT
1 G-GTTTAGGGTTTAA
43605038 GGTTTTAGGGTTTAA
1 GG-TTTAGGGTTTAA
*
43605053 -GTTTATGGTTTAA
1 GGTTTAGGGTTTAA
43605066 GGTTTAG
1 GGTTTAG
43605073 ATTAACTAGT
Statistics
Matches: 82, Mismatches: 15, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
13 16 0.20
14 42 0.51
15 24 0.29
ACGTcount: A:0.20, C:0.02, G:0.33, T:0.45
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:43605337 original size:21 final size:20
Alignment explanation
Indices: 43605303--43605343 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
43605293 TATGGATTTA
*
43605303 GGGATTATGGTTTAAGGGTT
1 GGGATTAAGGTTTAAGGGTT
*
43605323 GGGATTTAAGGTTTAATGGTT
1 GGGA-TTAAGGTTTAAGGGTT
43605344 AAGAGTTTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.22, C:0.00, G:0.37, T:0.41
Consensus pattern (20 bp):
GGGATTAAGGTTTAAGGGTT
Found at i:43605378 original size:22 final size:22
Alignment explanation
Indices: 43605350--43605403 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
43605340 GGTTAAGAGT
43605350 TTTAGGGGTTAAGAGTTAGGGA
1 TTTAGGGGTTAAGAGTTAGGGA
* * *
43605372 TTTAGGGTTTAGGATTTAGGGA
1 TTTAGGGGTTAAGAGTTAGGGA
*
43605394 TTTAAGGGTT
1 TTTAGGGGTT
43605404 GGGTTAGGGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.39
Consensus pattern (22 bp):
TTTAGGGGTTAAGAGTTAGGGA
Found at i:43605386 original size:14 final size:15
Alignment explanation
Indices: 43605369--43605397 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
43605359 TAAGAGTTAG
43605369 GGATTTAGGG-TTTA
1 GGATTTAGGGATTTA
43605383 GGATTTAGGGATTTA
1 GGATTTAGGGATTTA
43605398 AGGGTTGGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.24, C:0.00, G:0.34, T:0.41
Consensus pattern (15 bp):
GGATTTAGGGATTTA
Found at i:43611086 original size:87 final size:87
Alignment explanation
Indices: 43610945--43611196 Score: 233
Period size: 87 Copynumber: 2.9 Consensus size: 87
43610935 AGACCTGATG
* * * * ** * *
43610945 CGATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCC--TGGTTCAATCTGCTCCACTGTAACTT
* * **
43611010 TAGGGAGATAGGA-T-AGGGTCTT
64 CAGGGAGATAAGACTGAAAGTCTT
*
43611032 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCT
1 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATC-CTGG-TTCAATCTGCTCCACTGTAACTT
*
43611097 CAGGGAGATAAGATCTGAAATTCTT
64 CAGGGAGATAAGA-CTGAAAGTCTT
* * * * * * *
43611122 -TAGTCTGTTCCACTGTAATCTCAGGGAAATAAGA-CCTGGTGCGATCTGCTCTACTGTAACTTC
1 CGA-TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCTGGTTCAATCTGCTCCACTGTAACTTC
43611185 AGGGAGATAAGA
65 AGGGAGATAAGA
43611197 TCCTTTATTT
Statistics
Matches: 137, Mismatches: 22, Indels: 12
0.80 0.13 0.07
Matches are distributed among these distances:
86 1 0.01
87 95 0.69
88 5 0.04
89 3 0.02
90 33 0.24
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.30
Consensus pattern (87 bp):
CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCCTGGTTCAATCTGCTCCACTGTAACTTCA
GGGAGATAAGACTGAAAGTCTT
Found at i:43611167 original size:131 final size:131
Alignment explanation
Indices: 43611032--43611330 Score: 324
Period size: 131 Copynumber: 2.3 Consensus size: 131
43611022 ATAGGGTCTT
* * *
43611032 CGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTC-TGGCTTCAATCTGCTCCACTGTAACC
1 CGATCTGCTCCACTGTAA-CTCAGGGAGATAAGATCTCTTGACTTCAATCCGCTCCACTGTAACC
*
43611096 TCAGGGAGATAAGATCTGAAAT-TCTTTAG-TCTGTTCCACTGTAATCTCAGGGAAATAAGA-C-
65 TCAGGGAGATAAGA--T--AATGTC-TTAGATCTGCTCCACTGTAATCTCAGGGAAATAAGATCT
43611157 CTGG-TG
125 CTGGCTG
* * * * *
43611163 CGATCTGCTCTACTGTAACTTCAGGGAGATAAGATC-CTTTATTTTAATCCGCTCCACTGTAACT
1 CGATCTGCTCCACTGTAAC-TCAGGGAGATAAGATCTCTTGACTTCAATCCGCTCCACTGTAACC
* * * * *
43611227 TCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGC
65 TCAGGGAGATAAGATAATGTCTTAGATCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGC
*
43611292 TT
130 TG
* *
43611294 CAATCTGCTCCACTGTGACCTCAGGGAGATAAGATCT
1 CGATCTGCTCCACTGT-AACTCAGGGAGATAAGATCT
43611331 GAAATTCTTT
Statistics
Matches: 141, Mismatches: 18, Indels: 17
0.80 0.10 0.10
Matches are distributed among these distances:
127 5 0.04
128 30 0.21
129 2 0.01
130 6 0.04
131 96 0.68
132 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (131 bp):
CGATCTGCTCCACTGTAACTCAGGGAGATAAGATCTCTTGACTTCAATCCGCTCCACTGTAACCT
CAGGGAGATAAGATAATGTCTTAGATCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGCT
G
Found at i:43611197 original size:87 final size:90
Alignment explanation
Indices: 43611035--43611286 Score: 250
Period size: 87 Copynumber: 2.9 Consensus size: 90
43611025 GGGTCTTCGA
* * *
43611035 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGCTGCAATCTGCTCCACTGTAACCTCAG
43611100 GGAGATAAGATCTGAAATTCTTTAG
66 GGAGATAAGATCTGAAATTCTTTAG
* * * *
43611125 TCTGTTCCACTGTAATCTCAGGGAAATAAGA-C-CTGG-TGCGATCTGCTCTACTGTAACTTCAG
1 TCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGCTGCAATCTGCTCCACTGTAACCTCAG
** *
43611187 GGAGATAAGATCCT-TTA-T-TTTAA
66 GGAGATAAGAT-CTGAAATTCTTTAG
* * * ** * * * * *
43611210 TCCGCTCCACTGTAA-CTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCGCTGTAATCTCA
1 TCTGCTCCACTGTAATC-TCAGGGAAATAAGATCTCTGGCTGCAATCTGCTCCACTGTAACCTCA
43611273 GGGAGATAAGATCT
65 GGGAGATAAGATCT
43611287 CTGGCTTCAA
Statistics
Matches: 136, Mismatches: 21, Indels: 14
0.80 0.12 0.08
Matches are distributed among these distances:
84 1 0.01
85 29 0.21
86 5 0.04
87 66 0.49
88 6 0.04
89 1 0.01
90 28 0.21
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (90 bp):
TCTGCTCCACTGTAATCTCAGGGAAATAAGATCTCTGGCTGCAATCTGCTCCACTGTAACCTCAG
GGAGATAAGATCTGAAATTCTTTAG
Found at i:43611289 original size:218 final size:218
Alignment explanation
Indices: 43610905--43611376 Score: 829
Period size: 218 Copynumber: 2.2 Consensus size: 218
43610895 TGTTGTGTTC
* * *
43610905 AGTCTATTCCACTG-CATCTTCAGGGAAATAAGACCTGATGCGATCTACTCTGCTGTAACCTCAG
1 AGTCTGTTCCACTGTAATC-TCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAG
*
43610969 AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTTAGGGAGATAGGATAGGGTCTTCG
65 AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGGGTCTTCG
43611034 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
130 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCA
43611099 GGGAGATAAGATCTGAAATTCTTT
195 GGGAGATAAGATCTGAAATTCTTT
* * * *
43611123 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGGTGCGATCTGCTCTACTGTAACTTCAGG
1 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGA
*
43611188 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGA
66 GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGGGTCTTCGA
*
43611253 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTGACCTCAG
131 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
43611318 GGAGATAAGATCTGAAATTCTTT
196 GGAGATAAGATCTGAAATTCTTT
*
43611341 AGTCTGTTCCACTGTAATCTCAGGGGAATAAGACCT
1 AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCT
43611377 TTATAATGAA
Statistics
Matches: 242, Mismatches: 11, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
218 239 0.99
219 3 0.01
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.30
Consensus pattern (218 bp):
AGTCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATGCGATCTACTCTACTGTAACCTCAGA
GAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGGGTCTTCGA
TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAG
GGAGATAAGATCTGAAATTCTTT
Found at i:43611304 original size:87 final size:87
Alignment explanation
Indices: 43610995--43611324 Score: 224
Period size: 87 Copynumber: 3.8 Consensus size: 87
43610985 ATTTTAATCC
* * *** * * * * *
43610995 GCTCCACTGTAACTTTAGGGAGATAGGAT-AGGGTCTTCGATCTGCTCCGCTGTAATCTCAGGGA
1 GCTCCACTGTAACTTCAGGGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAGGGA
* ** * *
43611059 GATAAGATCTCTGGCTTCAATCT
66 GATAGGAT-AGTGTCTTCGATCT
* * * * * *
43611082 GCTCCACTGTAACCTCAGGGAGATAAGAT-C-TGAAATTCTTTAGTCTGTTCCACTGTAATCTCA
1 GCTCCACTGTAACTTCAGGGAGATAAGATCCTTG--A--CTTCAATCCGCTCCACTGTAACCTCA
* * ** * *
43611145 GGGAAATAAGA-CCTG-GTGCGATCT
62 GGGAGATAGGATAGTGTCTTCGATCT
* * * * *
43611169 GCTCTACTGTAACTTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGA
1 GCTCCACTGTAACTTCAGGGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAGGGA
43611234 GATAGGATAGTGTCTTCGATCT
66 GATAGGATAGTGTCTTCGATCT
* * * *
43611256 GCTCCGCTGTAA-TCTCAGGGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTGACCTCAGG
1 GCTCCACTGTAACT-TCAGGGAGATAAGATCCT-TGACTTCAATCCGCTCCACTGTAACCTCAGG
43611319 GAGATA
64 GAGATA
43611325 AGATCTGAAA
Statistics
Matches: 193, Mismatches: 40, Indels: 20
0.76 0.16 0.08
Matches are distributed among these distances:
85 29 0.15
86 6 0.03
87 122 0.63
88 4 0.02
89 1 0.01
90 31 0.16
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (87 bp):
GCTCCACTGTAACTTCAGGGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCAGGGA
GATAGGATAGTGTCTTCGATCT
Found at i:43611330 original size:44 final size:44
Alignment explanation
Indices: 43610957--43611330 Score: 280
Period size: 44 Copynumber: 8.6 Consensus size: 44
43610947 ATCTACTCTG
* *** * *
43610957 CTGTAACCTCAGAGAGATAAGATC-CTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTC-TGGCTTCAATCTGCTCCA
* * * ** * *
43611001 CTGTAACTTTAGGGAGATAGGA--TAGGGTCTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCTCTGG-CTTCAATCTGCTCCA
*
43611044 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
* * * * *
43611088 CTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTTAGTCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCT---CTGGCTTCAATCTGCTCCA
* * * * *
43611134 CTGTAATCTCAGGGAAATAAGA-C-CTGG-TGCGATCTGCTCTA
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
* *** * *
43611175 CTGTAACTTCAGGGAGATAAGATC-CTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTC-TGGCTTCAATCTGCTCCA
* * ** * * *
43611219 CTGTAACTTCAGGGAGATAGGAT-AGTGTCTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
*
43611262 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
*
43611306 CTGTGACCTCAGGGAGATAAGATCT
1 CTGTAACCTCAGGGAGATAAGATCT
43611331 GAAATTCTTT
Statistics
Matches: 251, Mismatches: 66, Indels: 26
0.73 0.19 0.08
Matches are distributed among these distances:
41 28 0.11
42 2 0.01
43 60 0.24
44 124 0.49
45 4 0.02
46 32 0.13
47 1 0.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (44 bp):
CTGTAACCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
Found at i:43612583 original size:1 final size:1
Alignment explanation
Indices: 43612577--43612609 Score: 66
Period size: 1 Copynumber: 33.0 Consensus size: 1
43612567 CAAAGTCCCC
43612577 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
43612610 GGGAAGCAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:43621106 original size:1 final size:1
Alignment explanation
Indices: 43621100--43621134 Score: 61
Period size: 1 Copynumber: 35.0 Consensus size: 1
43621090 TTTGCTTCCC
*
43621100 AAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
43621135 GAGGACTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
1 32 1.00
ACGTcount: A:0.97, C:0.03, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:43622708 original size:43 final size:42
Alignment explanation
Indices: 43622563--43622801 Score: 167
Period size: 43 Copynumber: 5.5 Consensus size: 42
43622553 AATAAACGGA
* * * *
43622563 ATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCACCCAG
1 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGCCAG
* * * * * **
43622605 GTCTTAT-TTCCTGAGATTACAGTGGAACAGACTAAAGAATTTCAG
1 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGA-T--CGAA-GCCAG
*
43622650 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAG
1 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGCCAG
* * *
43622692 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAGACC-C
1 -ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAG-CCAG
* * * * ** ***
43622735 ATCCTATCTCCCTAAAGTTACAGTGGGAGCGGATTAAATAAAGG
1 ATCTTATCTCCCTGAGGTTACAGT-GGAGCAGATCGAAGCCA-G
*
43622779 ATCTTATCTCTCTGAGGTTACAG
1 ATCTTATCTCCCTGAGGTTACAG
43622802 CAGAGTATGA
Statistics
Matches: 150, Mismatches: 37, Indels: 18
0.73 0.18 0.09
Matches are distributed among these distances:
41 19 0.13
42 29 0.19
43 48 0.32
44 23 0.15
45 10 0.07
46 21 0.14
ACGTcount: A:0.30, C:0.22, G:0.21, T:0.27
Consensus pattern (42 bp):
ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATCGAAGCCAG
Found at i:43624800 original size:17 final size:17
Alignment explanation
Indices: 43624778--43624811 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
43624768 TTATATTCGA
43624778 ATTCATTTTAGTTATTT
1 ATTCATTTTAGTTATTT
*
43624795 ATTCATTTTCGTTATTT
1 ATTCATTTTAGTTATTT
43624812 GATTGTAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.09, G:0.06, T:0.65
Consensus pattern (17 bp):
ATTCATTTTAGTTATTT
Found at i:43628286 original size:21 final size:21
Alignment explanation
Indices: 43628254--43628306 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 21
43628244 ACCCTAACCC
43628254 AACCCTTAAATCCCTAAATCCT
1 AACCC-TAAATCCCTAAATCCT
* *
43628276 AACCCTAAATCCCTAACTCTT
1 AACCCTAAATCCCTAAATCCT
43628297 AACCCCTAAA
1 AA-CCCTAAA
43628307 CTCTAAACCA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 16 0.57
22 12 0.43
ACGTcount: A:0.38, C:0.38, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCCTAAATCCCTAAATCCT
Found at i:43628310 original size:15 final size:14
Alignment explanation
Indices: 43628273--43628315 Score: 50
Period size: 14 Copynumber: 3.0 Consensus size: 14
43628263 ATCCCTAAAT
* *
43628273 CCTAACCCTAAATC
1 CCTAACTCTAAACC
*
43628287 CCTAACTCTTAACC
1 CCTAACTCTAAACC
43628301 CCTAAACTCTAAACC
1 CCT-AACTCTAAACC
43628316 ATATAAAACC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (14 bp):
CCTAACTCTAAACC
Found at i:43635630 original size:40 final size:40
Alignment explanation
Indices: 43635593--43635724 Score: 178
Period size: 40 Copynumber: 3.3 Consensus size: 40
43635583 GCTACTCGTT
* *
43635593 CAAATGCCTTCGGGACAT-AGCCTGATTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATT-TAGTAACTCGCA
*
43635633 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
43635673 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
43635712 CAAATGCCTTCGG
1 CAAATGCCTTCGG
43635725 ATCTTAGTCC
Statistics
Matches: 85, Mismatches: 6, Indels: 3
0.90 0.06 0.03
Matches are distributed among these distances:
39 35 0.41
40 43 0.51
41 7 0.08
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:43635710 original size:79 final size:82
Alignment explanation
Indices: 43635593--43635777 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
43635583 GCTACTCGTT
* * *
43635593 CAAATGCCTTCGGGACATAG-CCTGATTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
43635656 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
43635673 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
43635736 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
43635753 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43635778 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 50 0.55
80 38 0.42
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:43649512 original size:12 final size:12
Alignment explanation
Indices: 43649495--43649541 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
43649485 AACACTCCAT
43649495 AAATATTTATAA
1 AAATATTTATAA
*
43649507 AAATATTTATGGA
1 AAATATTTAT-AA
*
43649520 AAATATTTAAAA
1 AAATATTTATAA
43649532 AAATATTTAT
1 AAATATTTAT
43649542 GGCTCGGTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
12 20 0.67
13 10 0.33
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.40
Consensus pattern (12 bp):
AAATATTTATAA
Found at i:43649523 original size:25 final size:25
Alignment explanation
Indices: 43649495--43649543 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
43649485 AACACTCCAT
*
43649495 AAATATTTATAAAAATATTTATGGA
1 AAATATTTAAAAAAATATTTATGGA
43649520 AAATATTTAAAAAAATATTTATGG
1 AAATATTTAAAAAAATATTTATGG
43649544 CTCGGTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (25 bp):
AAATATTTAAAAAAATATTTATGGA
Found at i:43650900 original size:21 final size:22
Alignment explanation
Indices: 43650860--43650901 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
43650850 ATCGTTTCTA
*
43650860 TTTACAAAAAACCTTAGTTTTT
1 TTTACAAAAAACCATAGTTTTT
*
43650882 TTTAGAAAAAACCAT-GTTTT
1 TTTACAAAAAACCATAGTTTT
43650902 GTGGAGTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (22 bp):
TTTACAAAAAACCATAGTTTTT
Found at i:43652365 original size:13 final size:13
Alignment explanation
Indices: 43652331--43652356 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
43652321 CTAACAATCA
43652331 AATAACACACCAT
1 AATAACACACCAT
43652344 AATAACACACCAT
1 AATAACACACCAT
43652357 TTAACCACAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.31, G:0.00, T:0.15
Consensus pattern (13 bp):
AATAACACACCAT
Found at i:43654484 original size:16 final size:16
Alignment explanation
Indices: 43654463--43654494 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
43654453 TGATTGAAAG
*
43654463 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
43654479 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
43654495 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:43657592 original size:19 final size:20
Alignment explanation
Indices: 43657559--43657597 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
43657549 GTTAATTTCA
*
43657559 ATTTTTTAATATTATTTAAT
1 ATTTTTTAATATTATGTAAT
*
43657579 ATTTTTTCAT-TTATGTAAT
1 ATTTTTTAATATTATGTAAT
43657598 TTAAATTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (20 bp):
ATTTTTTAATATTATGTAAT
Found at i:43667327 original size:18 final size:18
Alignment explanation
Indices: 43667306--43667368 Score: 72
Period size: 18 Copynumber: 3.4 Consensus size: 18
43667296 TGTCGAAAAG
43667306 ATAATTAATTTTTACAAA
1 ATAATTAATTTTTACAAA
** ** *
43667324 ATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTAC-AAA
43667343 ATAATTAATTTTTACAAA
1 ATAATTAATTTTTACAAA
43667361 ATAATTAA
1 ATAATTAA
43667369 AGTGCACTTA
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
18 21 0.62
19 13 0.38
ACGTcount: A:0.51, C:0.06, G:0.03, T:0.40
Consensus pattern (18 bp):
ATAATTAATTTTTACAAA
Found at i:43667346 original size:19 final size:19
Alignment explanation
Indices: 43667322--43667380 Score: 66
Period size: 19 Copynumber: 3.2 Consensus size: 19
43667312 AATTTTTACA
43667322 AAATAATTAAAGTGCACTT
1 AAATAATTAAAGTGCACTT
** ** *
43667341 AAATAATTAATTTTTAC-A
1 AAATAATTAAAGTGCACTT
43667359 AAATAATTAAAGTGCACTT
1 AAATAATTAAAGTGCACTT
43667378 AAA
1 AAA
43667381 ATATGAACAT
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
18 13 0.45
19 16 0.55
ACGTcount: A:0.51, C:0.08, G:0.07, T:0.34
Consensus pattern (19 bp):
AAATAATTAAAGTGCACTT
Found at i:43667347 original size:37 final size:37
Alignment explanation
Indices: 43667306--43667380 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
43667296 TGTCGAAAAG
43667306 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
43667343 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
1 ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
43667380 A
1 A
43667381 ATATGAACAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.49, C:0.08, G:0.05, T:0.37
Consensus pattern (37 bp):
ATAATTAATTTTTACAAAATAATTAAAGTGCACTTAA
Found at i:43675782 original size:24 final size:24
Alignment explanation
Indices: 43675755--43675813 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 24
43675745 AAATGAATCA
**
43675755 AATTATGTATGTTCAAATGGAGTG
1 AATTATGTATGTTCAAATCAAGTG
* * *
43675779 AATTATCATATGTTTAATTCAAGTG
1 AATTAT-GTATGTTCAAATCAAGTG
43675804 AATTATGTAT
1 AATTATGTAT
43675814 AAATACACTA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
24 9 0.32
25 19 0.68
ACGTcount: A:0.36, C:0.05, G:0.17, T:0.42
Consensus pattern (24 bp):
AATTATGTATGTTCAAATCAAGTG
Found at i:43678924 original size:59 final size:59
Alignment explanation
Indices: 43678845--43678963 Score: 193
Period size: 59 Copynumber: 2.0 Consensus size: 59
43678835 TTATTCTAAA
* * * * *
43678845 GTTTTCTTGTAGGAATGTGACTTAGATCATTTCCCTGCCACTAACACATTTGTTTGTTT
1 GTTTTCTGGCAGGAACGTGACTTAGATCATTTCCCCGCCAATAACACATTTGTTTGTTT
43678904 GTTTTCTGGCAGGAACGTGACTTAGATCATTTCCCCGCCAATAACACATTTGTTTGTTT
1 GTTTTCTGGCAGGAACGTGACTTAGATCATTTCCCCGCCAATAACACATTTGTTTGTTT
43678963 G
1 G
43678964 CGTATGTTAG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
59 55 1.00
ACGTcount: A:0.21, C:0.20, G:0.18, T:0.40
Consensus pattern (59 bp):
GTTTTCTGGCAGGAACGTGACTTAGATCATTTCCCCGCCAATAACACATTTGTTTGTTT
Found at i:43680473 original size:26 final size:25
Alignment explanation
Indices: 43680442--43680532 Score: 100
Period size: 26 Copynumber: 3.6 Consensus size: 25
43680432 CTTATTAGCG
43680442 TCCCGA-TATATGGCTCTTCGTGAGCT
1 TCCCGATTA-ATGGCTCTTC-TGAGCT
*
43680468 TCCCGATTAAAGGCTCTTTCTGAGCT
1 TCCCGATTAATGGCTC-TTCTGAGCT
*
43680494 TCCTGATTAATGGCTC-TCTAGAGCT
1 TCCCGATTAATGGCTCTTCT-GAGCT
43680519 TCCCGA-T-ATGGCTC
1 TCCCGATTAATGGCTC
43680533 GCTTGAACTT
Statistics
Matches: 58, Mismatches: 4, Indels: 9
0.82 0.06 0.13
Matches are distributed among these distances:
23 7 0.12
24 4 0.07
25 10 0.17
26 32 0.55
27 5 0.09
ACGTcount: A:0.18, C:0.27, G:0.21, T:0.34
Consensus pattern (25 bp):
TCCCGATTAATGGCTCTTCTGAGCT
Found at i:43680653 original size:25 final size:26
Alignment explanation
Indices: 43680584--43680655 Score: 67
Period size: 25 Copynumber: 2.8 Consensus size: 26
43680574 TATGGCTCTT
* **
43680584 ATGAGCTTCCTGTTATATAGC-ATGG
1 ATGAGCTTCCTGTTATATGGCTATAC
* ** *
43680609 ATAAGCTTCCCATTACATGGCTA-AC
1 ATGAGCTTCCTGTTATATGGCTATAC
43680634 ATGAGCTTCCTGTTATATGGCT
1 ATGAGCTTCCTGTTATATGGCT
43680656 CGAGAGAGAG
Statistics
Matches: 35, Mismatches: 11, Indels: 2
0.73 0.23 0.04
Matches are distributed among these distances:
25 34 0.97
26 1 0.03
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (26 bp):
ATGAGCTTCCTGTTATATGGCTATAC
Found at i:43694024 original size:19 final size:21
Alignment explanation
Indices: 43694000--43694040 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
43693990 AATATTTTTT
43694000 TATTTTTT-TATTT-TTAAAA
1 TATTTTTTATATTTATTAAAA
*
43694019 TATTTTTTATGTTTATTAAAA
1 TATTTTTTATATTTATTAAAA
43694040 T
1 T
43694041 CGGGCCGGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 4 0.21
21 7 0.37
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (21 bp):
TATTTTTTATATTTATTAAAA
Found at i:43694245 original size:17 final size:19
Alignment explanation
Indices: 43694223--43694257 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
43694213 CTAAAATAGT
43694223 AACAAAA-TTA-ACAATAA
1 AACAAAAGTTATACAATAA
43694240 AACAAAAGTTATACAATA
1 AACAAAAGTTATACAATA
43694258 TCCAAACAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.66, C:0.11, G:0.03, T:0.20
Consensus pattern (19 bp):
AACAAAAGTTATACAATAA
Found at i:43694291 original size:11 final size:11
Alignment explanation
Indices: 43694273--43694314 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
43694263 ACAATAACAA
43694273 CAAAATAGTAG
1 CAAAATAGTAG
*
43694284 CAACATAGTAG
1 CAAAATAGTAG
* *
43694295 TAAAATTGTAG
1 CAAAATAGTAG
43694306 CAAAATAGT
1 CAAAATAGT
43694315 GAAAAAAAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.50, C:0.10, G:0.17, T:0.24
Consensus pattern (11 bp):
CAAAATAGTAG
Found at i:43694321 original size:22 final size:22
Alignment explanation
Indices: 43694274--43694320 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 22
43694264 CAATAACAAC
* *
43694274 AAAATAGTAGCAACATAGTAGT
1 AAAATAGTAGCAAAATAGTAGA
*
43694296 AAAATTGTAGCAAAATAGT-GA
1 AAAATAGTAGCAAAATAGTAGA
43694317 AAAA
1 AAAA
43694321 AAAACAAAGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.55, C:0.06, G:0.17, T:0.21
Consensus pattern (22 bp):
AAAATAGTAGCAAAATAGTAGA
Found at i:43702471 original size:41 final size:42
Alignment explanation
Indices: 43702424--43702532 Score: 141
Period size: 43 Copynumber: 2.6 Consensus size: 42
43702414 TCAATATCAC
* *
43702424 TGTCCCAGACAGGGTCTTATACGAATCAT-A-TACGATGCCAA
1 TGTCCCAGACATGGTCTTACACGAATC-TCACTACGATGCCAA
** *
43702465 TGTCCCAGACATGGTCTTACACGTTTTCTCACTTCGATGCCAA
1 TGTCCCAGACATGGTCTTACACG-AATCTCACTACGATGCCAA
43702508 TGTCCCAGACATGGTCTTACACGAA
1 TGTCCCAGACATGGTCTTACACGAA
43702533 ATCACACCTC
Statistics
Matches: 58, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
41 22 0.38
42 3 0.05
43 33 0.57
ACGTcount: A:0.27, C:0.28, G:0.18, T:0.28
Consensus pattern (42 bp):
TGTCCCAGACATGGTCTTACACGAATCTCACTACGATGCCAA
Found at i:43719833 original size:28 final size:27
Alignment explanation
Indices: 43719793--43719845 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
43719783 TAAATATATA
43719793 TTTTTAATTTTTTTAATTTTAAAATACT
1 TTTTTAA-TTTTTTAATTTTAAAATACT
* *
43719821 TTTTTTATTTTTTATTTTTAAAATA
1 TTTTTAATTTTTTAATTTTAAAATA
43719846 AATTTTGGGT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 17 0.74
28 6 0.26
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (27 bp):
TTTTTAATTTTTTAATTTTAAAATACT
Found at i:43719851 original size:27 final size:28
Alignment explanation
Indices: 43719783--43719851 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 28
43719773 TCGAATATAA
*
43719783 TAAATATATATTTTTAATTTTTTTAATTT
1 TAAA-ATAAATTTTTAATTTTTTTAATTT
** * *
43719812 TAAAATACTTTTTTTA-TTTTTTATTTT
1 TAAAATAAATTTTTAATTTTTTTAATTT
43719839 TAAAATAAATTTT
1 TAAAATAAATTTT
43719852 GGGTGTTTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 21 0.62
28 9 0.26
29 4 0.12
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (28 bp):
TAAAATAAATTTTTAATTTTTTTAATTT
Found at i:43731530 original size:16 final size:15
Alignment explanation
Indices: 43731505--43731535 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
43731495 GAAACAGGGG
43731505 GAAAAGAAAGAAAGA
1 GAAAAGAAAGAAAGA
43731520 GAAAGAGAAAGAAAGA
1 GAAA-AGAAAGAAAGA
43731536 AGGAGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
GAAAAGAAAGAAAGA
Found at i:43732527 original size:40 final size:40
Alignment explanation
Indices: 43732406--43732545 Score: 142
Period size: 40 Copynumber: 3.5 Consensus size: 40
43732396 GACTTTGAGT
* * * *
43732406 CGATGAGACACTGGGTGTGAATTTATTACTTCGGATTAATT
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATT-ATC
* * * *
43732447 CGATGAGGCATTGGGTGTC-AA-T-TTACTTCGATTTAGC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
**
43732484 CGATGAGACACTGATTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
* *
43732524 CGATGAGGCACTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
43732546 CTAGCATGTT
Statistics
Matches: 78, Mismatches: 18, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
37 16 0.21
38 12 0.15
39 2 0.03
40 32 0.41
41 16 0.21
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTATC
Found at i:43737651 original size:100 final size:100
Alignment explanation
Indices: 43737476--43737674 Score: 319
Period size: 100 Copynumber: 2.0 Consensus size: 100
43737466 TATAAACTGA
* * * * *
43737476 AGTAAAAATCTCGTACGCTAATCCTATAACATGCCATCTATGCCCAACTCTATTCGAGACCCTTA
1 AGTAAAAATCTCATACACTAATCCTATAACATGCCATCTATACCCAACTCTATCCGAGACCATTA
43737541 ATAAGGTATCCAATGTTTCTAACATATATATATAT
66 ATAAGGTATCCAATGTTTCTAACATATATATATAT
* *
43737576 AGTAAAAATCTCATACACTAATCCTATGACATGCCATCTATACCCGACTCTATCCGAGACCATTA
1 AGTAAAAATCTCATACACTAATCCTATAACATGCCATCTATACCCAACTCTATCCGAGACCATTA
43737641 AT-AGGATATCCAATGTTTCTAACATATATATATA
66 ATAAGG-TATCCAATGTTTCTAACATATATATATA
43737675 GTTCACATAC
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
99 3 0.03
100 88 0.97
ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31
Consensus pattern (100 bp):
AGTAAAAATCTCATACACTAATCCTATAACATGCCATCTATACCCAACTCTATCCGAGACCATTA
ATAAGGTATCCAATGTTTCTAACATATATATATAT
Found at i:43743676 original size:18 final size:18
Alignment explanation
Indices: 43743653--43743709 Score: 69
Period size: 18 Copynumber: 3.2 Consensus size: 18
43743643 AAAATGAGAG
*
43743653 TGAGGGTGATGCTGAAGA
1 TGAGGGTGATGGTGAAGA
* * *
43743671 TGAGGGTGATGGAGAGGC
1 TGAGGGTGATGGTGAAGA
*
43743689 TGAGGGTGAGGGTGAAGA
1 TGAGGGTGATGGTGAAGA
43743707 TGA
1 TGA
43743710 AGGAGAGGAT
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.26, C:0.04, G:0.51, T:0.19
Consensus pattern (18 bp):
TGAGGGTGATGGTGAAGA
Found at i:43743717 original size:24 final size:24
Alignment explanation
Indices: 43743690--43743735 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
43743680 TGGAGAGGCT
* *
43743690 GAGGGTGAGGGTGAAGATGAAGGA
1 GAGGATGAGGATGAAGATGAAGGA
* *
43743714 GAGGATGATGATGATGATGAAG
1 GAGGATGAGGATGAAGATGAAG
43743736 AGGGTGAAGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.48, T:0.17
Consensus pattern (24 bp):
GAGGATGAGGATGAAGATGAAGGA
Found at i:43755222 original size:3 final size:3
Alignment explanation
Indices: 43755214--43755257 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
43755204 AGTTCTTTTT
43755214 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
43755258 TTGGAATATT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:43758255 original size:3 final size:3
Alignment explanation
Indices: 43758249--43758280 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
43758239 AGGAGAAATA
43758249 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
43758281 TAATAAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:43767765 original size:19 final size:19
Alignment explanation
Indices: 43767743--43767806 Score: 53
Period size: 19 Copynumber: 3.4 Consensus size: 19
43767733 AAACTTTGTG
43767743 AGATAAACATGTAAAAAAC
1 AGATAAACATGTAAAAAAC
***
43767762 AGATAAA-A-G-AAAATTTGTG
1 AGATAAACATGTAAAA---AAC
43767781 AGATAAACATGTAAAAAAC
1 AGATAAACATGTAAAAAAC
43767800 AGATAAA
1 AGATAAA
43767807 GTTTGTAACC
Statistics
Matches: 33, Mismatches: 6, Indels: 12
0.65 0.12 0.24
Matches are distributed among these distances:
16 4 0.12
17 1 0.03
18 1 0.03
19 21 0.64
20 1 0.03
21 1 0.03
22 4 0.12
ACGTcount: A:0.61, C:0.06, G:0.14, T:0.19
Consensus pattern (19 bp):
AGATAAACATGTAAAAAAC
Found at i:43767768 original size:38 final size:38
Alignment explanation
Indices: 43767725--43767806 Score: 137
Period size: 38 Copynumber: 2.2 Consensus size: 38
43767715 TAAAACAATT
* *
43767725 GATAAACCAAACTTTGTGAGATAAACATGTAAAAAACA
1 GATAAAACAAAATTTGTGAGATAAACATGTAAAAAACA
*
43767763 GATAAAAGAAAATTTGTGAGATAAACATGTAAAAAACA
1 GATAAAACAAAATTTGTGAGATAAACATGTAAAAAACA
43767801 GATAAA
1 GATAAA
43767807 GTTTGTAACC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.56, C:0.09, G:0.15, T:0.21
Consensus pattern (38 bp):
GATAAAACAAAATTTGTGAGATAAACATGTAAAAAACA
Found at i:43768471 original size:20 final size:21
Alignment explanation
Indices: 43768441--43768484 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
43768431 ACTAATCAAA
*
43768441 TAGGCAATTTT-GGTTTATTAT
1 TAGGCAATTTTAGATTT-TTAT
43768462 TAGG-AATTTTAGATTTTTAT
1 TAGGCAATTTTAGATTTTTAT
43768482 TAG
1 TAG
43768485 ATAACGAGAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.27, C:0.02, G:0.18, T:0.52
Consensus pattern (21 bp):
TAGGCAATTTTAGATTTTTAT
Found at i:43769284 original size:19 final size:19
Alignment explanation
Indices: 43769260--43769296 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
43769250 AAAAAATATA
*
43769260 TATTTTAAAAATTTATAAG
1 TATTTTAAAAAGTTATAAG
*
43769279 TATTTTATAAAGTTATAA
1 TATTTTAAAAAGTTATAA
43769297 CAAAAAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (19 bp):
TATTTTAAAAAGTTATAAG
Found at i:43770987 original size:26 final size:27
Alignment explanation
Indices: 43770938--43770990 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 27
43770928 AAAATTAATG
*
43770938 CTAATTAGACTGAAAATATTGAATGTT
1 CTAATTAAACTGAAAATATTGAATGTT
43770965 CTAATTAAACTG-AAATATTGAATGTT
1 CTAATTAAACTGAAAATATTGAATGTT
43770991 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 14 0.56
27 11 0.44
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.38
Consensus pattern (27 bp):
CTAATTAAACTGAAAATATTGAATGTT
Found at i:43774961 original size:16 final size:16
Alignment explanation
Indices: 43774940--43774973 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
43774930 ACCATATCCC
43774940 ATGTTGCTTT-TTCCAT
1 ATGTTG-TTTCTTCCAT
43774956 ATGTTGTTTCTTCCAT
1 ATGTTGTTTCTTCCAT
43774972 AT
1 AT
43774974 TAACGTCCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 3 0.18
16 14 0.82
ACGTcount: A:0.15, C:0.18, G:0.12, T:0.56
Consensus pattern (16 bp):
ATGTTGTTTCTTCCAT
Found at i:43775199 original size:26 final size:26
Alignment explanation
Indices: 43775170--43775221 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
43775160 AAAATTAATG
* *
43775170 CTAATTAGACTGAAATATAGAATGTT
1 CTAATTAAAATGAAATATAGAATGTT
* *
43775196 CTAATTAAAATGAATTATTGAATGTT
1 CTAATTAAAATGAAATATAGAATGTT
43775222 TTCTTTTATT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.42, C:0.06, G:0.13, T:0.38
Consensus pattern (26 bp):
CTAATTAAAATGAAATATAGAATGTT
Found at i:43779925 original size:29 final size:28
Alignment explanation
Indices: 43779890--43779967 Score: 104
Period size: 29 Copynumber: 2.7 Consensus size: 28
43779880 TCATGAGATT
43779890 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
*
43779920 -GCACTAAGTGTGCGAGTTTAAAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
43779947 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
43779968 GATTATTAAG
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 5 0.12
29 35 0.81
30 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:43780230 original size:173 final size:174
Alignment explanation
Indices: 43779920--43780246 Score: 557
Period size: 173 Copynumber: 1.9 Consensus size: 174
43779910 AAATTGTACA
* *
43779920 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
* * *
43779985 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
43780050 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
131 TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
* * * * *
43780094 GCACTAAGTGTGTGAGTTTAAAGTGCATGTCACTAAGTGTGCGTGGTTGATTACTAAACATTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
43780159 TGTGC-AACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
43780223 TTTTGGACAGCGGAAAAGGTAAGT
131 TTTTGGACAGCGGAAAAGGTAAGT
43780247 ACCTTGAGTT
Statistics
Matches: 143, Mismatches: 10, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
173 80 0.56
174 63 0.44
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTACTAAACACTATG
TGTGCGAACCCAATATATATTTTATATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
TTTTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATG
Found at i:43784863 original size:26 final size:26
Alignment explanation
Indices: 43784833--43784884 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
43784823 AAAATCAATG
*
43784833 CTAATTCAACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
*
43784859 CTAATTAAATTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43784885 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTGAATGTT
Found at i:43785730 original size:26 final size:26
Alignment explanation
Indices: 43785700--43785751 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
43785690 AAAATCAATG
43785700 CTAATGAAACTGAAATATTGAATGTT
1 CTAATGAAACTGAAATATTGAATGTT
*
43785726 CTAATTAAACTGAAATATTGAATGTT
1 CTAATGAAACTGAAATATTGAATGTT
43785752 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (26 bp):
CTAATGAAACTGAAATATTGAATGTT
Found at i:43787749 original size:26 final size:26
Alignment explanation
Indices: 43787719--43787770 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
43787709 AAAATCAATG
*
43787719 CTAATTCAACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43787745 CTAATTAAACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43787771 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.10, G:0.12, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTGAATGTT
Found at i:43789538 original size:21 final size:21
Alignment explanation
Indices: 43789514--43789556 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
43789504 AATAATAACT
43789514 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
43789535 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
43789556 A
1 A
43789557 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:43794600 original size:21 final size:21
Alignment explanation
Indices: 43794558--43794600 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
43794548 TTCACTATAC
*
43794558 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
43794579 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
43794600 A
1 A
43794601 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:43795709 original size:39 final size:37
Alignment explanation
Indices: 43795642--43795734 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
43795632 ACCAGAATGG
* *
43795642 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
43795681 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
43795718 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
43795735 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:43796098 original size:3 final size:3
Alignment explanation
Indices: 43796090--43796146 Score: 78
Period size: 3 Copynumber: 19.0 Consensus size: 3
43796080 ATTCCCACTC
* * *
43796090 ATA ATA ATA ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
43796138 ATA TTA ATA
1 ATA ATA ATA
43796147 CTTACCTCAC
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:43796816 original size:11 final size:11
Alignment explanation
Indices: 43796802--43796827 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
43796792 CTTTTTCTTC
43796802 TTTCTCCCCTG
1 TTTCTCCCCTG
43796813 TTTCTCCCCTG
1 TTTCTCCCCTG
43796824 TTTC
1 TTTC
43796828 GTCTCTTCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.42, G:0.08, T:0.50
Consensus pattern (11 bp):
TTTCTCCCCTG
Found at i:43797206 original size:21 final size:21
Alignment explanation
Indices: 43797182--43797224 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
43797172 AATAATAACT
43797182 AATAACTAATAATAAATAATA
1 AATAACTAATAATAAATAATA
* * * *
43797203 AATATCTTATACTAATTAATA
1 AATAACTAATAATAAATAATA
43797224 A
1 A
43797225 GCAAATTAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.58, C:0.07, G:0.00, T:0.35
Consensus pattern (21 bp):
AATAACTAATAATAAATAATA
Found at i:43797835 original size:26 final size:26
Alignment explanation
Indices: 43797805--43797856 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
43797795 AAAATCAATG
43797805 CTAATTCA-ACTGAAATATTGAATGTT
1 CTAATT-AGACTGAAATATTGAATGTT
43797831 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTAGACTGAAATATTGAATGTT
43797857 TTCTTTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (26 bp):
CTAATTAGACTGAAATATTGAATGTT
Found at i:43802011 original size:26 final size:26
Alignment explanation
Indices: 43801981--43802032 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
43801971 AAAATTAATG
*
43801981 CTAATTAGACTGAAATA-TAGAATGTT
1 CTAATTAAACTGAAATATTA-AATGTT
43802007 CTAATTAAACTGAAATATTAAATGTT
1 CTAATTAAACTGAAATATTAAATGTT
43802033 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.44, C:0.08, G:0.12, T:0.37
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTAAATGTT
Found at i:43809146 original size:50 final size:50
Alignment explanation
Indices: 43809071--43809170 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
43809061 GTTCATATCA
*
43809071 ATAATGCGGAATTGGAATGTTTTAGCGTGGTTAGGAGTTAAAACAATCTC
1 ATAATACGGAATTGGAATGTTTTAGCGTGGTTAGGAGTTAAAACAATCTC
*
43809121 ATAATACGGAATTGGAATGTTTTAGCGTGGTTAGGAGTTGAAACAATCTC
1 ATAATACGGAATTGGAATGTTTTAGCGTGGTTAGGAGTTAAAACAATCTC
43809171 GATTCCTTGA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.32, C:0.10, G:0.26, T:0.32
Consensus pattern (50 bp):
ATAATACGGAATTGGAATGTTTTAGCGTGGTTAGGAGTTAAAACAATCTC
Found at i:43811411 original size:26 final size:26
Alignment explanation
Indices: 43811382--43811433 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
43811372 AAAATCAATG
* *
43811382 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTACACTGAAATAATGAATGTT
43811408 CTAATTACACTGAAATAATGAATGTT
1 CTAATTACACTGAAATAATGAATGTT
43811434 TTCTTCTTCT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (26 bp):
CTAATTACACTGAAATAATGAATGTT
Found at i:43814581 original size:26 final size:26
Alignment explanation
Indices: 43814552--43814604 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
43814542 AAATCAATGC
* * *
43814552 TAATTAGACTGAAATATTGAATGTTT
1 TAATTACACTAAAATAATGAATGTTT
*
43814578 TAATTACACTAAAATAATGAATTTTT
1 TAATTACACTAAAATAATGAATGTTT
43814604 T
1 T
43814605 CTTCTATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.42, C:0.06, G:0.09, T:0.43
Consensus pattern (26 bp):
TAATTACACTAAAATAATGAATGTTT
Found at i:43817777 original size:26 final size:26
Alignment explanation
Indices: 43817747--43817798 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
43817737 AAAATCAATG
* *
43817747 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTACACTGAAATAATGAATGTT
43817773 CTAATTACACTGAAATAATGAATGTT
1 CTAATTACACTGAAATAATGAATGTT
43817799 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.40, C:0.10, G:0.13, T:0.37
Consensus pattern (26 bp):
CTAATTACACTGAAATAATGAATGTT
Found at i:43819529 original size:26 final size:26
Alignment explanation
Indices: 43819490--43819541 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
43819480 AAAATCAATG
* *
43819490 CTAATTAAATTGAAATATTGACTGTT
1 CTAATTAAACTGAAATATTGAATGTT
*
43819516 CTAATTATACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43819542 TTCTTTTATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTGAATGTT
Found at i:43825102 original size:26 final size:26
Alignment explanation
Indices: 43825072--43825123 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
43825062 AAAATTAATG
* *
43825072 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
43825098 CTAATTAAACTAAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
43825124 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTAAAATATTGAATGTT
Found at i:43828646 original size:119 final size:120
Alignment explanation
Indices: 43828462--43828686 Score: 305
Period size: 119 Copynumber: 1.9 Consensus size: 120
43828452 GCTCCTCGTT
*
43828462 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
43828527 ATTTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * **
43828582 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
* * *
43828644 GGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 GGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
43828687 CATCATTCAA
Statistics
Matches: 92, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
118 4 0.04
119 66 0.72
120 22 0.24
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:43828686 original size:40 final size:40
Alignment explanation
Indices: 43828462--43828686 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
43828452 GCTCCTCGTT
* *
43828462 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
43828502 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
43828542 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
43828582 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
43828621 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
43828662 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43828687 CATCATTCAA
Statistics
Matches: 166, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 2 0.01
39 32 0.19
40 120 0.72
41 12 0.07
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:43836673 original size:119 final size:120
Alignment explanation
Indices: 43836491--43836713 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 120
43836481 TCCTCGTTCA
*
43836491 AATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
43836556 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
* * **
43836611 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGACATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* * *
43836673 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGA
43836714 CATCATTCAA
Statistics
Matches: 90, Mismatches: 10, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
118 4 0.04
119 66 0.73
120 20 0.22
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCACC
Found at i:43836713 original size:40 final size:40
Alignment explanation
Indices: 43836489--43836713 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
43836479 GCTCCTCGTT
* *
43836489 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
43836529 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
43836569 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
43836609 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
43836648 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
43836689 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
43836714 CATCATTCAA
Statistics
Matches: 164, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
38 2 0.01
39 31 0.19
40 119 0.73
41 12 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:43840565 original size:26 final size:26
Alignment explanation
Indices: 43840535--43840586 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
43840525 AAAATTAATG
*
43840535 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43840561 CTAATTAAACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43840587 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTGAATGTT
Found at i:43843725 original size:26 final size:26
Alignment explanation
Indices: 43843696--43843747 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
43843686 AAAATTAATG
* *
43843696 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTAAACAGAAATATTGAATGTT
43843722 CTAATTAAACAGAAATATTGAATGTT
1 CTAATTAAACAGAAATATTGAATGTT
43843748 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (26 bp):
CTAATTAAACAGAAATATTGAATGTT
Found at i:43844798 original size:26 final size:26
Alignment explanation
Indices: 43844768--43844819 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
43844758 AAAATTAATG
*
43844768 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43844794 CTAATTAAACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43844820 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTGAATGTT
Found at i:43845871 original size:26 final size:26
Alignment explanation
Indices: 43845841--43845892 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
43845831 AAAATTAATG
* *
43845841 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
43845867 CTAATTAAACTAAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
43845893 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTAAAATATTGAATGTT
Found at i:43847991 original size:26 final size:26
Alignment explanation
Indices: 43847961--43848012 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
43847951 AAAATTAATG
*
43847961 CTAATTAGACTAAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
*
43847987 CTAATTAAACTGAAATATTGAATGTT
1 CTAATTAAACTAAAATATTGAATGTT
43848013 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTAAAATATTGAATGTT
Found at i:43849063 original size:26 final size:26
Alignment explanation
Indices: 43849033--43849084 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
43849023 AAAATTAATG
*
43849033 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43849059 CTAATTAAACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43849085 TTCTTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTGAATGTT
Found at i:43851184 original size:26 final size:26
Alignment explanation
Indices: 43851154--43851205 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
43851144 AAAATTAATG
*
43851154 CTAATTAGACTGAAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
*
43851180 CTAATTAAACTGCAATATTGAATGTT
1 CTAATTAAACTGAAATATTGAATGTT
43851206 TTCTTTTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (26 bp):
CTAATTAAACTGAAATATTGAATGTT
Done.