Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 133 of 199
Found at i:44488747 original size:50 final size:51
Alignment explanation
Indices: 44488672--44488869 Score: 193
Period size: 50 Copynumber: 3.8 Consensus size: 51
44488662 TTTCTTGTAC
* * **
44488672 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATAT-TGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATATGG
* ** * * *
44488722 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTGTCATCT-CGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATATGG
* * *
44488772 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAACCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--T--ATGG
* * *
44488828 TGCCAATGTCATGTCCCAAACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
44488870 TTACCCAAAT
Statistics
Matches: 118, Mismatches: 24, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
50 79 0.67
53 1 0.01
56 38 0.32
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.28
Consensus pattern (51 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATATGG
Found at i:44493503 original size:17 final size:17
Alignment explanation
Indices: 44493478--44493536 Score: 54
Period size: 17 Copynumber: 3.6 Consensus size: 17
44493468 TGCCAATGTG
*
44493478 GGCCTACACGCCCGTGT
1 GGCCCACACGCCCGTGT
44493495 GGCCCACACGCCCAGAT-T
1 GGCCCACACGCCC-G-TGT
*
44493513 GG-CCTCA--CCCGTGT
1 GGCCCACACGCCCGTGT
44493527 GGCCCACACG
1 GGCCCACACG
44493537 GCCTGGCCCA
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
13 1 0.03
14 4 0.12
15 7 0.21
17 16 0.48
18 4 0.12
19 1 0.03
ACGTcount: A:0.15, C:0.44, G:0.27, T:0.14
Consensus pattern (17 bp):
GGCCCACACGCCCGTGT
Found at i:44497295 original size:27 final size:27
Alignment explanation
Indices: 44497265--44497478 Score: 196
Period size: 27 Copynumber: 7.9 Consensus size: 27
44497255 TAAAATTAAT
*
44497265 GAAATA-CCCTCGAAGGGTAAAATTATC
1 GAAATACCCCT-GAAGGGTAAAATGATC
* *
44497292 GAAATACCCCTGAAAGGTAAAATGACC
1 GAAATACCCCTGAAGGGTAAAATGATC
* * * *
44497319 AAAATACCCCCGAATGGTAAAATGATA
1 GAAATACCCCTGAAGGGTAAAATGATC
* *
44497346 AAAATACCCCTAAAGGGTAAAATGATC
1 GAAATACCCCTGAAGGGTAAAATGATC
* * * * *
44497373 GTAATGCCCCTGTAGAGTAAAATGACC
1 GAAATACCCCTGAAGGGTAAAATGATC
* * * *
44497400 GTAATGCCCCTGTAGGGTAAAATGACC
1 GAAATACCCCTGAAGGGTAAAATGATC
* * *
44497427 GTAATTCCCCTGTAGGGTAAAATGATC
1 GAAATACCCCTGAAGGGTAAAATGATC
* * *
44497454 GTAATACCCTTGTAGGGTAAAATGA
1 GAAATACCCCTGAAGGGTAAAATGA
44497479 CTATTTTGCC
Statistics
Matches: 162, Mismatches: 24, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
27 158 0.98
28 4 0.02
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (27 bp):
GAAATACCCCTGAAGGGTAAAATGATC
Found at i:44497393 original size:81 final size:81
Alignment explanation
Indices: 44497277--44497479 Score: 219
Period size: 81 Copynumber: 2.5 Consensus size: 81
44497267 AATACCCTCG
* * * *
44497277 AAGGGTAAAATTATCGAAATACCCCTG-AAAGGTAAAATGACCAAAATACCCCCGAATGGTAAAA
1 AAGGGTAAAATGATCGTAATACCCCTGTAGA-GTAAAATGACCAAAATACCCCCGAAGGGTAAAA
*
44497341 TGATAAAAATACCCCTA
65 TGACAAAAATACCCCTA
* ** * * *
44497358 AAGGGTAAAATGATCGTAATGCCCCTGTAGAGTAAAATGACCGTAATGCCCCTGTAGGGTAAAAT
1 AAGGGTAAAATGATCGTAATACCCCTGTAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAAT
*** * *
44497423 GACCGTAATTCCCCTG
66 GACAAAAATACCCCTA
* * *
44497439 TAGGGTAAAATGATCGTAATACCCTTGTAGGGTAAAATGAC
1 AAGGGTAAAATGATCGTAATACCCCTGTAGAGTAAAATGAC
44497480 TATTTTGCCC
Statistics
Matches: 101, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
81 99 0.98
82 2 0.02
ACGTcount: A:0.39, C:0.19, G:0.20, T:0.22
Consensus pattern (81 bp):
AAGGGTAAAATGATCGTAATACCCCTGTAGAGTAAAATGACCAAAATACCCCCGAAGGGTAAAAT
GACAAAAATACCCCTA
Found at i:44497583 original size:24 final size:24
Alignment explanation
Indices: 44497506--44497570 Score: 94
Period size: 24 Copynumber: 2.7 Consensus size: 24
44497496 GTTAAACAAT
* * *
44497506 TGATTTGTCCGAGATGTAAATGAC
1 TGATTTGTCTGTGATTTAAATGAC
44497530 TGATTTGTCTGTGATTTAAATGAC
1 TGATTTGTCTGTGATTTAAATGAC
*
44497554 TGATTTGTTTGTGATTT
1 TGATTTGTCTGTGATTT
44497571 GTATGACTAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 37 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (24 bp):
TGATTTGTCTGTGATTTAAATGAC
Found at i:44497694 original size:27 final size:27
Alignment explanation
Indices: 44497651--44497706 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
44497641 GGAAGTACTA
*
44497651 TACTGGTGGCTCTGCCACA-ATCACTGT
1 TACTGGTGACTCTGCCACATAT-ACTGT
44497678 TACTGGTGACT-TGGCCACATATACTGT
1 TACTGGTGACTCT-GCCACATATACTGT
44497705 TA
1 TA
44497707 TTGGCAGCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
26 1 0.04
27 23 0.88
28 2 0.08
ACGTcount: A:0.21, C:0.25, G:0.21, T:0.32
Consensus pattern (27 bp):
TACTGGTGACTCTGCCACATATACTGT
Found at i:44497730 original size:26 final size:26
Alignment explanation
Indices: 44497698--44497751 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
44497688 TTGGCCACAT
* *
44497698 ATACTGTTATTGGCAGCTTTACTGCG
1 ATACTGTTACTGACAGCTTTACTGCG
* *
44497724 ATACTGTTGCTGACAGCTTTGCTGCG
1 ATACTGTTACTGACAGCTTTACTGCG
44497750 AT
1 AT
44497752 GCTATTGATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.20, G:0.24, T:0.37
Consensus pattern (26 bp):
ATACTGTTACTGACAGCTTTACTGCG
Found at i:44497842 original size:64 final size:61
Alignment explanation
Indices: 44497757--44497953 Score: 207
Period size: 61 Copynumber: 3.1 Consensus size: 61
44497747 GCGATGCTAT
* * * *
44497757 TGATGGCTTTGTGCCGGTCATATTTCCATTACTGATGGTTGTGTGTCAATCATATTACCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTACTGATGGTT-TGTGTCAATCATATTACC--TAC
* * * *
44497821 TGATGGCTTTATGCTGATCATATTACTACTACTGATGGCTTTGTGTCGATCATACTA-CTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTACTGATGG-TTTGTGTCAATCATATTACCTAC
* * * * *
44497882 TGATGGCTGTGTGCCGACCATATTACTACTACTGAGTGTTTTGTGCCAATCATATTACTGTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTACTGA-TGGTTTGTGTCAATCATATTAC-CTAC
*
44497945 TTATGGCTT
1 TGATGGCTT
44497954 GTAGCCATTC
Statistics
Matches: 110, Mismatches: 19, Indels: 9
0.80 0.14 0.07
Matches are distributed among these distances:
61 49 0.45
62 2 0.02
63 11 0.10
64 46 0.42
65 2 0.02
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (61 bp):
TGATGGCTTTGTGCCGATCATATTACTACTACTGATGGTTTGTGTCAATCATATTACCTAC
Found at i:44497877 original size:29 final size:29
Alignment explanation
Indices: 44497786--44497911 Score: 103
Period size: 29 Copynumber: 4.1 Consensus size: 29
44497776 ATATTTCCAT
* *
44497786 TACTGATGG-TTGTGTGTCAATCATATTACC
1 TACTGATGGCTT-TGTGTCGATCATACTA-C
*
44497816 ATTACTGATGGCTTTATG-CTGATCATATTACTAC
1 --TACTGATGGCTTTGTGTC-GATC--A-TACTAC
44497850 TACTGATGGCTTTGTGTCGATCATACTAC
1 TACTGATGGCTTTGTGTCGATCATACTAC
* * * *
44497879 TACTGATGGCTGTGTGCCGACCATATTAC
1 TACTGATGGCTTTGTGTCGATCATACTAC
44497908 TACT
1 TACT
44497912 ACTGAGTGTT
Statistics
Matches: 80, Mismatches: 8, Indels: 15
0.78 0.08 0.15
Matches are distributed among these distances:
29 35 0.44
30 1 0.01
31 1 0.01
32 34 0.43
33 3 0.04
34 2 0.03
35 4 0.05
ACGTcount: A:0.23, C:0.20, G:0.19, T:0.38
Consensus pattern (29 bp):
TACTGATGGCTTTGTGTCGATCATACTAC
Found at i:44497940 original size:32 final size:32
Alignment explanation
Indices: 44497757--44497953 Score: 181
Period size: 32 Copynumber: 6.3 Consensus size: 32
44497747 GCGATGCTAT
* * * *
44497757 TGATGGCTTTGTGCCGGTCATATTTCCATTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
* * * *
44497789 TGATGG-TTGTGTGTCAATCATATTACCATTAC
1 TGATGGCTT-TGTGCCGATCATATTACTACTAC
* *
44497821 TGATGGCTTTATGCTGATCATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
*
44497853 TGATGGCTTTGTGTCGATC--A-TACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
* *
44497882 TGATGGCTGTGTGCCGACCATATTACTACTAC
1 TGATGGCTTTGTGCCGATCATATTACTACTAC
* * *
44497914 TGA-GTGTTTTGTGCCAATCATATTACT-GTAC
1 TGATG-GCTTTGTGCCGATCATATTACTACTAC
*
44497945 TTATGGCTT
1 TGATGGCTT
44497954 GTAGCCATTC
Statistics
Matches: 135, Mismatches: 23, Indels: 15
0.78 0.13 0.09
Matches are distributed among these distances:
29 25 0.19
30 1 0.01
31 12 0.09
32 95 0.70
33 2 0.01
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (32 bp):
TGATGGCTTTGTGCCGATCATATTACTACTAC
Found at i:44497970 original size:22 final size:21
Alignment explanation
Indices: 44497945--44498009 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
44497935 ATTACTGTAC
44497945 TTATGGCTTGTAGCCATTCTGT
1 TTATGGCTT-TAGCCATTCTGT
* * *
44497967 TTATAGCTTATAGCTATCCTGT
1 TTATGGCTT-TAGCCATTCTGT
* *
44497989 TTACGGCTCTTAGTCATTCTG
1 TTATGGCT-TTAGCCATTCTG
44498010 GTTACTAGCA
Statistics
Matches: 33, Mismatches: 9, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.17, C:0.20, G:0.18, T:0.45
Consensus pattern (21 bp):
TTATGGCTTTAGCCATTCTGT
Found at i:44501666 original size:30 final size:29
Alignment explanation
Indices: 44501630--44501722 Score: 123
Period size: 30 Copynumber: 3.1 Consensus size: 29
44501620 TGTGCTAAAT
*
44501630 GATGGTCAAAACCATCCCTTTTCTTTAATC
1 GATGGTCGAAACCATCCCTTTTC-TTAATC
* *
44501660 GATGGTCGAAACCATCCCTTTTCATATTC
1 GATGGTCGAAACCATCCCTTTTCTTAATC
**
44501689 GATGGTCGTCACCATCCCTTTTCATTAATC
1 GATGGTCGAAACCATCCCTTTTC-TTAATC
44501719 GATG
1 GATG
44501723 CTCGTTGATA
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
29 25 0.45
30 30 0.55
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (29 bp):
GATGGTCGAAACCATCCCTTTTCTTAATC
Found at i:44507738 original size:25 final size:27
Alignment explanation
Indices: 44507707--44507769 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
44507697 ATATCATACC
44507707 TTTCATATT-T-GTTGAAACCATCCCT
1 TTTCATATTATGGTTGAAACCATCCCT
**
44507732 TTTCATATTCGATGGTTGTCACCATCCCT
1 TTTCATATT--ATGGTTGAAACCATCCCT
44507761 TTTCATATT
1 TTTCATATT
44507770 CGATGGTCGT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
25 9 0.28
28 1 0.03
29 22 0.69
ACGTcount: A:0.21, C:0.24, G:0.10, T:0.46
Consensus pattern (27 bp):
TTTCATATTATGGTTGAAACCATCCCT
Found at i:44507759 original size:29 final size:29
Alignment explanation
Indices: 44507723--44507810 Score: 124
Period size: 29 Copynumber: 3.0 Consensus size: 29
44507713 ATTTGTTGAA
*
44507723 ACCATCCCTTTTCATATTCGATGGTTGTC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
*
44507752 ACCATCCCTTTTCATATTCGATGGTCGTT
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* *
44507781 AACATCCATTTTCATATGT-GATGGTCGTC
1 ACCATCCCTTTTCATAT-TCGATGGTCGTC
44507810 A
1 A
44507811 ATACGTCGTT
Statistics
Matches: 53, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
29 52 0.98
30 1 0.02
ACGTcount: A:0.20, C:0.25, G:0.15, T:0.40
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTCGATGGTCGTC
Found at i:44519422 original size:17 final size:19
Alignment explanation
Indices: 44519397--44519433 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
44519387 TTCACGCAAA
44519397 TTCTCCTCTC-CTTT-TTT
1 TTCTCCTCTCTCTTTCTTT
*
44519414 TTCTTCTCTCTCTTTCTTT
1 TTCTCCTCTCTCTTTCTTT
44519433 T
1 T
44519434 ATTGGGTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 4 0.24
19 4 0.24
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (19 bp):
TTCTCCTCTCTCTTTCTTT
Found at i:44521835 original size:26 final size:26
Alignment explanation
Indices: 44521805--44521885 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
44521795 AACACACTAA
44521805 TATCGCAGCAAAGCTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* * *
44521831 TATCGTAGCAAAGTTGCCAATAATAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
* *
44521857 TATCACAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAATAG
44521883 TAT
1 TAT
44521886 ATTTCCTCCA
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.22
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAATAG
Found at i:44522048 original size:27 final size:27
Alignment explanation
Indices: 44522018--44522123 Score: 79
Period size: 27 Copynumber: 3.9 Consensus size: 27
44522008 TCATCTCCTA
*
44522018 GGGGTATAACAGTCATTTTATCCTATG
1 GGGGTATAACAGTCATTTTACCCTATG
**** *
44522045 GGGGTATTTTGGTCATTTTACCCTGTG
1 GGGGTATAACAGTCATTTTACCCTATG
** *
44522072 GGGGTATTTC-GATCATTTTACCCTACG
1 GGGGTATAACAG-TCATTTTACCCTATG
* ** *
44522099 GGGATATTTCGGTCATTTTACCCTA
1 GGGGTATAACAGTCATTTTACCCTA
44522124 CAAAGGTATT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.01
27 65 0.97
28 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.40
Consensus pattern (27 bp):
GGGGTATAACAGTCATTTTACCCTATG
Found at i:44522124 original size:27 final size:27
Alignment explanation
Indices: 44522029--44522124 Score: 129
Period size: 27 Copynumber: 3.6 Consensus size: 27
44522019 GGGTATAACA
* * *
44522029 GTCATTTTATCCTATGGGGGTATTTTG
1 GTCATTTTACCCTACGGGGGTATTTCG
**
44522056 GTCATTTTACCCTGTGGGGGTATTTCG
1 GTCATTTTACCCTACGGGGGTATTTCG
* *
44522083 ATCATTTTACCCTACGGGGATATTTCG
1 GTCATTTTACCCTACGGGGGTATTTCG
44522110 GTCATTTTACCCTAC
1 GTCATTTTACCCTAC
44522125 AAAGGTATTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.17, C:0.20, G:0.22, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTACGGGGGTATTTCG
Found at i:44522143 original size:27 final size:27
Alignment explanation
Indices: 44522076--44522150 Score: 73
Period size: 27 Copynumber: 2.8 Consensus size: 27
44522066 CCTGTGGGGG
**
44522076 TATTTC-GATCATTTTACCCTACGGGGA
1 TATTTCAG-TCATTTTACCCTACAAGGA
*
44522103 TATTTCGGTCATTTTACCCTACAAAGG-
1 TATTTCAGTCATTTTACCCTAC-AAGGA
* *
44522130 TATTTCAGTTATTTTAACCTA
1 TATTTCAGTCATTTTACCCTA
44522151 TTTTGGGGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 38 0.93
28 3 0.07
ACGTcount: A:0.25, C:0.20, G:0.13, T:0.41
Consensus pattern (27 bp):
TATTTCAGTCATTTTACCCTACAAGGA
Found at i:44522144 original size:54 final size:54
Alignment explanation
Indices: 44522027--44522150 Score: 133
Period size: 54 Copynumber: 2.3 Consensus size: 54
44522017 AGGGGTATAA
* * * * *****
44522027 CAGTCATTTTATCCTATGGGGGTATTTTGGTCATTTTACCCTGTGGGGGTATTT
1 CAGTCATTTTAACCTACGGGGATATTTCGGTCATTTTACCCTACAAAGGTATTT
*
44522081 C-GATCATTTTACCCTACGGGGATATTTCGGTCATTTTACCCTACAAAGGTATTT
1 CAG-TCATTTTAACCTACGGGGATATTTCGGTCATTTTACCCTACAAAGGTATTT
*
44522135 CAGTTATTTTAACCTA
1 CAGTCATTTTAACCTA
44522151 TTTTGGGGTC
Statistics
Matches: 57, Mismatches: 11, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
53 1 0.02
54 55 0.96
55 1 0.02
ACGTcount: A:0.21, C:0.19, G:0.19, T:0.41
Consensus pattern (54 bp):
CAGTCATTTTAACCTACGGGGATATTTCGGTCATTTTACCCTACAAAGGTATTT
Found at i:44534856 original size:42 final size:43
Alignment explanation
Indices: 44534809--44534894 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 43
44534799 TTCTGAGGTG
* * * *
44534809 TGATTTTGTGTAAGAACATGTTTGGGACATTGGCATCG-TATA
1 TGATTTCGTGTAAGAACATGTCTGAGACAGTGGCATCGATATA
* *
44534851 TGATTTCGTGTAAGACCTTGTCTGAGACAGTGGCATCGATATA
1 TGATTTCGTGTAAGAACATGTCTGAGACAGTGGCATCGATATA
44534894 T
1 T
44534895 TATAACATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 32 0.86
43 5 0.14
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (43 bp):
TGATTTCGTGTAAGAACATGTCTGAGACAGTGGCATCGATATA
Found at i:44535569 original size:26 final size:25
Alignment explanation
Indices: 44535497--44535669 Score: 80
Period size: 23 Copynumber: 7.1 Consensus size: 25
44535487 GCTTAATTGC
44535497 TGTCCATTTTTTAGCATATTAATGT
1 TGTCCATTTTTTAGCATATTAATGT
* ** * *
44535522 TGTCCAAATTAGT-GC-T-TAAATGA
1 TGTCC-ATTTTTTAGCATATTAATGT
44535545 TGTCCATTTTTTTAGCATATTAATGT
1 TGTCCA-TTTTTTAGCATATTAATGT
** *
44535571 TGTCCA-AATTGAGGC---TTAATTGT
1 TGTCCATTTTTTA-GCATATTAA-TGT
* * *
44535594 TGTTCATTTTTTAGTATATTAATGA
1 TGTCCATTTTTTAGCATATTAATGT
** *
44535619 TGTCCA--AATT-G-ATGCTTAATTGT
1 TGTCCATTTTTTAGCAT-ATTAA-TGT
*
44535642 TGTCCATTTTTTAGTATATTAATGT
1 TGTCCATTTTTTAGCATATTAATGT
44535667 TGT
1 TGT
44535670 ACAAAGTAGT
Statistics
Matches: 104, Mismatches: 27, Indels: 34
0.63 0.16 0.21
Matches are distributed among these distances:
21 2 0.02
22 10 0.10
23 32 0.31
24 9 0.09
25 25 0.24
26 24 0.23
27 2 0.02
ACGTcount: A:0.26, C:0.10, G:0.15, T:0.49
Consensus pattern (25 bp):
TGTCCATTTTTTAGCATATTAATGT
Found at i:44535646 original size:97 final size:97
Alignment explanation
Indices: 44535476--44535700 Score: 314
Period size: 97 Copynumber: 2.3 Consensus size: 97
44535466 TAAGATGCTA
*
44535476 TCCAAATTG-GTGCTTAATTGCTGTCCATTTTTTAGCATATTAATGTTGTCCAAATTAGTGCTTA
1 TCCAAATTGAGTGCTTAATTGCTGTCCATTTTTTAGCATATTAATGATGTCCAAATTAGTGCTTA
44535540 AATGATGTCCATTTTTTTAGCATATTAATGTTG
66 AATGATGTCCA-TTTTTTAGCATATTAATGTTG
* * *
44535573 TCCAAATTGAG-GCTTAATTGTTGTTCATTTTTTAGTATATTAATGATGTCCAAATT-GATGCTT
1 TCCAAATTGAGTGCTTAATTGCTGTCCATTTTTTAGCATATTAATGATGTCCAAATTAG-TGCTT
* * *
44535636 AATTGTTGTCCATTTTTTAGTATATTAATGTTG
65 AAATGATGTCCATTTTTTAGCATATTAATGTTG
* * *
44535669 TACAAAGT-AGTGCTTAAATGCTGTCCATTTTT
1 TCCAAATTGAGTGCTTAATTGCTGTCCATTTTT
44535701 GTACAAATCA
Statistics
Matches: 113, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
95 2 0.02
96 45 0.40
97 65 0.58
98 1 0.01
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (97 bp):
TCCAAATTGAGTGCTTAATTGCTGTCCATTTTTTAGCATATTAATGATGTCCAAATTAGTGCTTA
AATGATGTCCATTTTTTAGCATATTAATGTTG
Found at i:44535715 original size:48 final size:48
Alignment explanation
Indices: 44535476--44535700 Score: 301
Period size: 48 Copynumber: 4.7 Consensus size: 48
44535466 TAAGATGCTA
*
44535476 TCCAAATTGGTGCTTAATTGCTGTCCATTTTTTAGCATATTAATGTTG
1 TCCAAATTAGTGCTTAATTGCTGTCCATTTTTTAGCATATTAATGTTG
* *
44535524 TCCAAATTAGTGCTTAAATGATGTCCATTTTTTTAGCATATTAATGTTG
1 TCCAAATTAGTGCTTAATTGCTGTCCA-TTTTTTAGCATATTAATGTTG
* * * *
44535573 TCCAAATTGAG-GCTTAATTGTTGTTCATTTTTTAGTATATTAATGATG
1 TCCAAATT-AGTGCTTAATTGCTGTCCATTTTTTAGCATATTAATGTTG
* *
44535621 TCCAAATT-GATGCTTAATTGTTGTCCATTTTTTAGTATATTAATGTTG
1 TCCAAATTAG-TGCTTAATTGCTGTCCATTTTTTAGCATATTAATGTTG
* * *
44535669 TACAAAGTAGTGCTTAAATGCTGTCCATTTTT
1 TCCAAATTAGTGCTTAATTGCTGTCCATTTTT
44535701 GTACAAATCA
Statistics
Matches: 158, Mismatches: 14, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
46 1 0.01
48 112 0.71
49 43 0.27
50 2 0.01
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.46
Consensus pattern (48 bp):
TCCAAATTAGTGCTTAATTGCTGTCCATTTTTTAGCATATTAATGTTG
Found at i:44542784 original size:42 final size:43
Alignment explanation
Indices: 44542737--44542822 Score: 111
Period size: 42 Copynumber: 2.0 Consensus size: 43
44542727 TTCTGAGGTG
* * *
44542737 TGATTTTGTGTAAGAACATGTCTGGGACATTGGCATCG-TATA
1 TGATTTCGTGTAAGAACATGTCTGAGACAGTGGCATCGATATA
* * *
44542779 TGATTTCGTGTAAGACCTTGTTTGAGACAGTGGCATCGATATA
1 TGATTTCGTGTAAGAACATGTCTGAGACAGTGGCATCGATATA
44542822 T
1 T
44542823 TATAACATGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 32 0.86
43 5 0.14
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.36
Consensus pattern (43 bp):
TGATTTCGTGTAAGAACATGTCTGAGACAGTGGCATCGATATA
Found at i:44543506 original size:50 final size:48
Alignment explanation
Indices: 44543398--44543581 Score: 253
Period size: 48 Copynumber: 3.8 Consensus size: 48
44543388 TGATGATAAG
* * *
44543398 ATGCTGTCCAAATTGGTGCTTAATTGTTGTCCATTTTTTAGCATATTA
1 ATGCTGTCCAAATTAGTGCTTAAATGCTGTCCATTTTTTAGCATATTA
*
44543446 ATGCTGTCCAAATTAGTGCTTAAATGATGTCCATTTTTTTTAGCATATTA
1 ATGCTGTCCAAATTAGTGCTTAAATGCTGTCCA--TTTTTTAGCATATTA
* * *
44543496 ATGCTGTCCAAATT-GATGTTTAATTGCTGTCCATTTTTTAGTATATTA
1 ATGCTGTCCAAATTAG-TGCTTAAATGCTGTCCATTTTTTAGCATATTA
* *
44543544 ATGTTGTCCAAATTAGAGCTTAAATGCTGTCCATTTTT
1 ATGCTGTCCAAATTAGTGCTTAAATGCTGTCCATTTTT
44543582 GTACAAATCA
Statistics
Matches: 121, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
48 76 0.63
49 2 0.02
50 43 0.36
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (48 bp):
ATGCTGTCCAAATTAGTGCTTAAATGCTGTCCATTTTTTAGCATATTA
Found at i:44543567 original size:98 final size:98
Alignment explanation
Indices: 44543398--44543581 Score: 305
Period size: 98 Copynumber: 1.9 Consensus size: 98
44543388 TGATGATAAG
* * *
44543398 ATGCTGTCCAAATTGGTGCTTAATTGTTGTCCATTTTTTAGCATATTAATGCTGTCCAAATTAGT
1 ATGCTGTCCAAATTGATGCTTAATTGCTGTCCATTTTTTAGCATATTAATGCTGTCCAAATTAGA
44543463 GCTTAAATGATGTCCATTTTTTTTAGCATATTA
66 GCTTAAATGATGTCCATTTTTTTTAGCATATTA
* * *
44543496 ATGCTGTCCAAATTGATGTTTAATTGCTGTCCATTTTTTAGTATATTAATGTTGTCCAAATTAGA
1 ATGCTGTCCAAATTGATGCTTAATTGCTGTCCATTTTTTAGCATATTAATGCTGTCCAAATTAGA
*
44543561 GCTTAAATGCTGTCCATTTTT
66 GCTTAAATGATGTCCATTTTT
44543582 GTACAAATCA
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 79 1.00
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (98 bp):
ATGCTGTCCAAATTGATGCTTAATTGCTGTCCATTTTTTAGCATATTAATGCTGTCCAAATTAGA
GCTTAAATGATGTCCATTTTTTTTAGCATATTA
Found at i:44543821 original size:27 final size:29
Alignment explanation
Indices: 44543767--44543831 Score: 80
Period size: 32 Copynumber: 2.2 Consensus size: 29
44543757 ATGTTTTGTC
44543767 TTATTTTACATACTTATTGTCCAAATGTGGCT
1 TTATTTTACATACTTATTGT---AATGTGGCT
*
44543799 TTATTTTACATACTTATT-T-ATGTGGTT
1 TTATTTTACATACTTATTGTAATGTGGCT
44543826 TTATTT
1 TTATTT
44543832 AACTAACTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
27 13 0.41
31 1 0.03
32 18 0.56
ACGTcount: A:0.23, C:0.11, G:0.11, T:0.55
Consensus pattern (29 bp):
TTATTTTACATACTTATTGTAATGTGGCT
Found at i:44544333 original size:17 final size:17
Alignment explanation
Indices: 44544307--44544358 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
44544297 AAAACTTGTT
*
44544307 TGTTTAAATTAGCTATG
1 TGTTTTAATTAGCTATG
44544324 TGTTTTAA-T---TATG
1 TGTTTTAATTAGCTATG
44544337 TG--TTAATTAGCTATG
1 TGTTTTAATTAGCTATG
44544352 TGTTTTA
1 TGTTTTA
44544359 TTGATATGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 12
0.68 0.02 0.29
Matches are distributed among these distances:
11 4 0.14
12 1 0.04
13 6 0.21
15 6 0.21
16 1 0.04
17 10 0.36
ACGTcount: A:0.25, C:0.04, G:0.17, T:0.54
Consensus pattern (17 bp):
TGTTTTAATTAGCTATG
Found at i:44544353 original size:15 final size:15
Alignment explanation
Indices: 44544313--44544355 Score: 54
Period size: 13 Copynumber: 3.0 Consensus size: 15
44544303 TGTTTGTTTA
44544313 AATTAGCTATGTGTT
1 AATTAGCTATGTGTT
**
44544328 --TTAATTATGTGTT
1 AATTAGCTATGTGTT
44544341 AATTAGCTATGTGTT
1 AATTAGCTATGTGTT
44544356 TTATTGATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
13 11 0.50
15 11 0.50
ACGTcount: A:0.26, C:0.05, G:0.19, T:0.51
Consensus pattern (15 bp):
AATTAGCTATGTGTT
Found at i:44556629 original size:26 final size:26
Alignment explanation
Indices: 44556613--44556667 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
44556603 GAAACAACTA
*
44556613 AGACTTTAATACCAAAGCACATACAT
1 AGACTTTAATACCAAAGAACATACAT
* *
44556639 AGACTTTAATACCAAAGCACAGACAT
1 AGACTTTAATACCAAAGAACATACAT
44556665 AGA
1 AGA
44556668 TCATTTGATC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.47, C:0.22, G:0.11, T:0.20
Consensus pattern (26 bp):
AGACTTTAATACCAAAGAACATACAT
Found at i:44562621 original size:28 final size:28
Alignment explanation
Indices: 44562581--44562637 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
44562571 TGGAAGTTCA
44562581 ACAAAAATGTTTCAACAACTCTTACGTG
1 ACAAAAATGTTTCAACAACTCTTACGTG
44562609 ACAAAAATGTTTCAACAACTCTTACGTG
1 ACAAAAATGTTTCAACAACTCTTACGTG
44562637 A
1 A
44562638 ACTCAGTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.40, C:0.21, G:0.11, T:0.28
Consensus pattern (28 bp):
ACAAAAATGTTTCAACAACTCTTACGTG
Found at i:44563270 original size:20 final size:20
Alignment explanation
Indices: 44563236--44563277 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
44563226 AACTATTTAA
** *
44563236 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
44563256 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
44563276 AT
1 AT
44563278 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:44564671 original size:15 final size:16
Alignment explanation
Indices: 44564646--44564679 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
44564636 AAGATGAAAC
*
44564646 GTTTGATAAATTTGAA
1 GTTTGATAAATCTGAA
44564662 GTTT-ATAAATCTGAA
1 GTTTGATAAATCTGAA
44564677 GTT
1 GTT
44564680 GAACTTTAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 13 0.76
16 4 0.24
ACGTcount: A:0.35, C:0.03, G:0.18, T:0.44
Consensus pattern (16 bp):
GTTTGATAAATCTGAA
Found at i:44567653 original size:20 final size:20
Alignment explanation
Indices: 44567630--44567672 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
44567620 AACTATTTAA
** *
44567630 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
44567650 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
44567670 ATA
1 ATA
44567673 TGTTTATTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:44569101 original size:18 final size:18
Alignment explanation
Indices: 44569078--44569114 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
44569068 TAACGCTACC
44569078 AAGCTCAAGCAAACAATA
1 AAGCTCAAGCAAACAATA
44569096 AAGCTCAAGCAAACAATA
1 AAGCTCAAGCAAACAATA
44569114 A
1 A
44569115 GAGTAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.57, C:0.22, G:0.11, T:0.11
Consensus pattern (18 bp):
AAGCTCAAGCAAACAATA
Found at i:44572777 original size:59 final size:59
Alignment explanation
Indices: 44572712--44572833 Score: 235
Period size: 59 Copynumber: 2.1 Consensus size: 59
44572702 TTGATCCTAA
*
44572712 GTCCTTATAATGTATGTTTTGGGGATATTCCCATGTACAAAAAGGGTATCGTAGTTATT
1 GTCCTTATAATGTATGTTTTGGAGATATTCCCATGTACAAAAAGGGTATCGTAGTTATT
44572771 GTCCTTATAATGTATGTTTTGGAGATATTCCCATGTACAAAAAGGGTATCGTAGTTATT
1 GTCCTTATAATGTATGTTTTGGAGATATTCCCATGTACAAAAAGGGTATCGTAGTTATT
44572830 GTCC
1 GTCC
44572834 AAGTCTTGGT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
59 62 1.00
ACGTcount: A:0.27, C:0.13, G:0.21, T:0.39
Consensus pattern (59 bp):
GTCCTTATAATGTATGTTTTGGAGATATTCCCATGTACAAAAAGGGTATCGTAGTTATT
Found at i:44574532 original size:12 final size:12
Alignment explanation
Indices: 44574515--44574541 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
44574505 ATAATCAAGC
44574515 TGCACTTCATAT
1 TGCACTTCATAT
44574527 TGCACTTCATAT
1 TGCACTTCATAT
44574539 TGC
1 TGC
44574542 TTCCCATCCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.26, G:0.11, T:0.41
Consensus pattern (12 bp):
TGCACTTCATAT
Found at i:44579829 original size:14 final size:15
Alignment explanation
Indices: 44579810--44579839 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
44579800 TTAGTAAATT
44579810 TTTTTAT-ATTTTAA
1 TTTTTATAATTTTAA
44579824 TTTTTATAATTTTAA
1 TTTTTATAATTTTAA
44579839 T
1 T
44579840 AATTTTTAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTTATAATTTTAA
Found at i:44579833 original size:9 final size:9
Alignment explanation
Indices: 44579821--44579867 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
44579811 TTTTATATTT
44579821 TAATTTTTA
1 TAATTTTTA
*
44579830 TAATTTTAA
1 TAATTTTTA
44579839 TAATTTTTA
1 TAATTTTTA
44579848 -ACATTTTTTA
1 TA-A-TTTTTA
*
44579858 TATTTTTTA
1 TAATTTTTA
44579867 T
1 T
44579868 TTTTAAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
8 1 0.03
9 24 0.75
10 6 0.19
11 1 0.03
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (9 bp):
TAATTTTTA
Found at i:44579854 original size:43 final size:42
Alignment explanation
Indices: 44579790--44579872 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 42
44579780 TATCTAATAT
44579790 TTTTAAAATTTTAGTAAATTTTTT-TATATTTTAATTTTTATAA
1 TTTTAAAATTTTA-TAAATTTTTTATAT-TTTTAATTTTTATAA
*
44579833 TTTTAATAATTTT-TAACATTTTTTATATTTTTTATTTTTA
1 TTTTAA-AATTTTATAA-ATTTTTTATATTTTTAATTTTTA
44579873 AAGAATTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
42 3 0.08
43 24 0.67
44 9 0.25
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (42 bp):
TTTTAAAATTTTATAAATTTTTTATATTTTTAATTTTTATAA
Found at i:44580156 original size:61 final size:61
Alignment explanation
Indices: 44580087--44580210 Score: 187
Period size: 61 Copynumber: 2.0 Consensus size: 61
44580077 AAAGTGCATA
* * * *
44580087 TTAAGCCTAAACA-AAAATTAGATAATGGCTAATCTTTTTAACTTAAAATTTAAGGCTTATT
1 TTAAGCCTAAAAATAAAATTAGATAATGGCAAATC-TTTTAACTTAAAAGTTAAGGATTATT
*
44580148 TTAAGCCTAAAAATAAAATTAGATAATTGCAAATCTTTTAACTTAAAAGTTAAGGATTATT
1 TTAAGCCTAAAAATAAAATTAGATAATGGCAAATCTTTTAACTTAAAAGTTAAGGATTATT
44580209 TT
1 TT
44580211 TCCAATAAGT
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
61 38 0.67
62 19 0.33
ACGTcount: A:0.43, C:0.10, G:0.10, T:0.38
Consensus pattern (61 bp):
TTAAGCCTAAAAATAAAATTAGATAATGGCAAATCTTTTAACTTAAAAGTTAAGGATTATT
Found at i:44580584 original size:23 final size:21
Alignment explanation
Indices: 44580555--44580596 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
44580545 AAAAAGTCAT
44580555 GAAATTAATTATAAATATTATTA
1 GAAATTAATTA-AAAT-TTATTA
44580578 GAAATTAATTAAAATTTAT
1 GAAATTAATTAAAATTTAT
44580597 AAAATTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 4 0.21
22 4 0.21
23 11 0.58
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (21 bp):
GAAATTAATTAAAATTTATTA
Found at i:44580874 original size:10 final size:10
Alignment explanation
Indices: 44580854--44580913 Score: 63
Period size: 10 Copynumber: 6.2 Consensus size: 10
44580844 TTTATGGTTA
44580854 TTAATTAATTT
1 TTAA-TAATTT
44580865 TTAATAA-TT
1 TTAATAATTT
*
44580874 TT-ATAAATT
1 TTAATAATTT
44580883 TTAATAA-TT
1 TTAATAATTT
44580892 TTAATAATTT
1 TTAATAATTT
* *
44580902 TTTATTATTT
1 TTAATAATTT
44580912 TT
1 TT
44580914 TATGTTATTT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
8 4 0.09
9 17 0.39
10 19 0.43
11 4 0.09
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (10 bp):
TTAATAATTT
Found at i:44580882 original size:9 final size:9
Alignment explanation
Indices: 44580863--44580902 Score: 64
Period size: 9 Copynumber: 4.4 Consensus size: 9
44580853 ATTAATTAAT
44580863 TTTTAATAA
1 TTTTAATAA
44580872 TTTT-ATAAA
1 TTTTAAT-AA
44580881 TTTTAATAA
1 TTTTAATAA
44580890 TTTTAATAA
1 TTTTAATAA
44580899 TTTT
1 TTTT
44580903 TTATTATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
8 2 0.07
9 25 0.86
10 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTTTAATAA
Found at i:44580896 original size:38 final size:37
Alignment explanation
Indices: 44580834--44580912 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 37
44580824 AATCAATTAT
**
44580834 TTTTATAAATTTTATGGTTATTAATTAATTTTTAATAA
1 TTTTATAAATTTTATAATTATTAA-TAATTTTTAATAA
* *
44580872 TTTTATAAATTTTAATAATT-TTAATAATTTTTTATTA
1 TTTTATAAATTTT-ATAATTATTAATAATTTTTAATAA
44580909 TTTT
1 TTTT
44580913 TTATGTTATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
37 15 0.42
38 17 0.47
39 4 0.11
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (37 bp):
TTTTATAAATTTTATAATTATTAATAATTTTTAATAA
Found at i:44580912 original size:19 final size:19
Alignment explanation
Indices: 44580854--44580903 Score: 75
Period size: 18 Copynumber: 2.6 Consensus size: 19
44580844 TTTATGGTTA
44580854 TTAATTAATTTTTAATAATT
1 TTAA-TAATTTTTAATAATT
*
44580874 TT-ATAAATTTTAATAATT
1 TTAATAATTTTTAATAATT
44580892 TTAATAATTTTT
1 TTAATAATTTTT
44580904 TATTATTTTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 16 0.59
19 9 0.33
20 2 0.07
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (19 bp):
TTAATAATTTTTAATAATT
Found at i:44582995 original size:11 final size:12
Alignment explanation
Indices: 44582958--44583002 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
44582948 TCCTAACTCC
44582958 TTTTTTTAAATA
1 TTTTTTTAAATA
* **
44582970 ATTTTAAAAATA
1 TTTTTTTAAATA
44582982 TTTTTTTAAA-A
1 TTTTTTTAAATA
44582993 TTTTTTTAAA
1 TTTTTTTAAA
44583003 CCGTAAAAAT
Statistics
Matches: 27, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
11 11 0.41
12 16 0.59
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTTTTAAATA
Found at i:44584114 original size:7 final size:7
Alignment explanation
Indices: 44584102--44584126 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
44584092 AGTCAATTGA
44584102 TATTTAG
1 TATTTAG
44584109 TATTTAG
1 TATTTAG
44584116 TATTTAG
1 TATTTAG
44584123 TATT
1 TATT
44584127 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:44586281 original size:29 final size:29
Alignment explanation
Indices: 44586248--44586351 Score: 133
Period size: 28 Copynumber: 3.7 Consensus size: 29
44586238 TGACTTTCGA
44586248 CACTAAGTGTGCGAGTTTAATTTGTAAAG
1 CACTAAGTGTGCGAGTTTAATTTGTAAAG
*
44586277 CACTAAGTGTGCGAGTTTAA-TGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTTGTAAAG
* * *
44586305 TACTAAGTGTGCGAGTTTGATTAT-T-GAG
1 CACTAAGTGTGCGAGTTTAATT-TGTAAAG
*
44586333 CACTAAGTGTGCGAATTTA
1 CACTAAGTGTGCGAGTTTA
44586352 TTAAATATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
28 43 0.66
29 22 0.34
ACGTcount: A:0.30, C:0.11, G:0.26, T:0.34
Consensus pattern (29 bp):
CACTAAGTGTGCGAGTTTAATTTGTAAAG
Found at i:44587123 original size:23 final size:23
Alignment explanation
Indices: 44587076--44587134 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
44587066 TTATGCTTAA
* *
44587076 ATGCTGCCC-AATTGATGTATTT
1 ATGCTGCCCAAATTGATATATAT
44587098 ATGCTGCCCAAATTG-TCATATAT
1 ATGCTGCCCAAATTGAT-ATATAT
* *
44587121 ATGCAGTCCAAATT
1 ATGCTGCCCAAATT
44587135 TTTGATGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 10 0.32
23 21 0.68
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (23 bp):
ATGCTGCCCAAATTGATATATAT
Found at i:44587151 original size:49 final size:45
Alignment explanation
Indices: 44587098--44587589 Score: 182
Period size: 46 Copynumber: 10.4 Consensus size: 45
44587088 TGATGTATTT
* *
44587098 ATGCTGCCCAAATTGTCATATATATGCAGTCCAAATTTTTGATGTAAAA
1 ATGCTGTCCAAATTGT-ATATACATGCAGT-CAAA-TTTTG-TGTAAAA
* * * *
44587147 ATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* * ** * * *
44587193 GTGCTGTCCAAATTGGTGTATGTATGCTGTCTAATTTT-TGGTGAATCA
1 ATGCTGTCCAAATT-GTATATACATGCAGTCAAATTTTGT-GT-AA-AA
* * * * *
44587241 ATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTATGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* * ** * * * *
44587287 GTGCTGTCCAAATTGGTGTATGTATGCTGCCTAATTTT-TGGTGAATCA
1 ATGCTGTCCAAATT-GTATATACATGCAGTCAAATTTTGT-GT-AA-AA
* * ** *
44587335 ATGCTGTCCAATTTTGTATATACATGCTGTTGAATTTTGTGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* * * ** * * * *
44587381 GTGCTTTCCAAATTGGTGTATGTATGCTGCCTAATTTT-TGGTGAATCA
1 ATGCTGTCCAAATT-GTATATACATGCAGTCAAATTTTGT-GT-AA-AA
* * * *
44587429 ATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* * ** * * * *
44587475 GTGTTGTCCAAATTGGTATATGTATGCTGCCTAATTTT-TGGTGAATCA
1 ATGCTGTCCAAATT-GTATATACATGCAGTCAAATTTTGT-GT-AA-AA
* * * * * *
44587523 TTGCTGTCCAATTTTGTATACACATGCTGTTAAATTTTGTGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* *
44587569 GTGCTATCCAAATTGGTATAT
1 ATGCTGTCCAAATT-GTATAT
44587590 GTATGCTGCC
Statistics
Matches: 326, Mismatches: 91, Indels: 55
0.69 0.19 0.12
Matches are distributed among these distances:
45 14 0.04
46 140 0.43
47 13 0.04
48 122 0.37
49 33 0.10
50 4 0.01
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (45 bp):
ATGCTGTCCAAATTGTATATACATGCAGTCAAATTTTGTGTAAAA
Found at i:44587254 original size:94 final size:94
Alignment explanation
Indices: 44587146--44587678 Score: 868
Period size: 94 Copynumber: 5.6 Consensus size: 94
44587136 TTGATGTAAA
44587146 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
*
44587211 TATGTATGCTGTCTAATTTTTGGTGAATC
66 TATGTATGCTGCCTAATTTTTGGTGAATC
*
44587240 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTATGTATAAGTGCTGTCCAAATTGGTG
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
44587305 TATGTATGCTGCCTAATTTTTGGTGAATC
66 TATGTATGCTGCCTAATTTTTGGTGAATC
* *
44587334 AATGCTGTCCAATTTTGTATATACATGCTGTTGAATTTTGTGTATAAGTGCTTTCCAAATTGGTG
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
44587399 TATGTATGCTGCCTAATTTTTGGTGAATC
66 TATGTATGCTGCCTAATTTTTGGTGAATC
* *
44587428 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGTTGTCCAAATTGGTA
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
44587493 TATGTATGCTGCCTAATTTTTGGTGAATC
66 TATGTATGCTGCCTAATTTTTGGTGAATC
* * * *
44587522 ATTGCTGTCCAATTTTGTATACACATGCTGTTAAATTTTGTGTATAAGTGCTATCCAAATTGGTA
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
* **
44587587 TATGTATGCTGCCTAATTTTCGGTGAAAAAA
66 TATGTATGCTGCCTAATTTTTGGTG--AATC
* * * * *
44587618 AATGCTGTCCAATTTTATATATATATGCTGCTCAATTTTTGATGTATAAGAGCTGTCCAAA
1 AATGCTGTCCAATTTTGTATATACATGCTG-TTAAATTTTG-TGTATAAGTGCTGTCCAAA
44587679 CAGGGTAGAT
Statistics
Matches: 411, Mismatches: 24, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
94 358 0.87
96 28 0.07
97 8 0.02
98 17 0.04
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (94 bp):
AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
TATGTATGCTGCCTAATTTTTGGTGAATC
Found at i:44594026 original size:28 final size:28
Alignment explanation
Indices: 44593963--44594066 Score: 145
Period size: 28 Copynumber: 3.7 Consensus size: 28
44593953 TGACTTTCGA
44593963 CACTAAGTGTGCGAGTTTAATTTGTAAAG
1 CACTAAGTGTGCGAGTTTAA-TTGTAAAG
*
44593992 CACTAAGTGTGCGAGTTTAATGGTAAAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
* * **
44594020 CACTAAGTGTGCGAGTTTGATTATTGAG
1 CACTAAGTGTGCGAGTTTAATTGTAAAG
*
44594048 CACTAAGTGTGCGAATTTA
1 CACTAAGTGTGCGAGTTTA
44594067 TTAAATATTT
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 47 0.70
29 20 0.30
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
CACTAAGTGTGCGAGTTTAATTGTAAAG
Found at i:44594836 original size:23 final size:23
Alignment explanation
Indices: 44594789--44594847 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
44594779 TTATGCTTAA
* *
44594789 ATGCTGCCC-AATTGATGTATTT
1 ATGCTGCCCAAATTGATATATAT
44594811 ATGCTGCCCAAATTG-TCATATAT
1 ATGCTGCCCAAATTGAT-ATATAT
* *
44594834 ATGCAGTCCAAATT
1 ATGCTGCCCAAATT
44594848 TTTGATGTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
22 10 0.32
23 21 0.68
ACGTcount: A:0.29, C:0.20, G:0.15, T:0.36
Consensus pattern (23 bp):
ATGCTGCCCAAATTGATATATAT
Found at i:44594864 original size:49 final size:45
Alignment explanation
Indices: 44594811--44595302 Score: 191
Period size: 46 Copynumber: 10.4 Consensus size: 45
44594801 TGATGTATTT
* *
44594811 ATGCTGCCCAAATTGTCATATATATGCAGTCCAAATTTTTGATGTAAAA
1 ATGCTGTCCAAATTGT-ATATACATGCAGT-CAAA-TTTTG-TGTAAAA
* * * *
44594860 ATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* * ** * * * *
44594906 GTGCTGTCCAAATTGGTGTATGTATGCTGCCTAATTTT-TGGTGAATCA
1 ATGCTGTCCAAATT-GTATATACATGCAGTCAAATTTTGT-GT-AA-AA
* * * * *
44594954 ATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTATATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* * * ** * * * *
44595000 GTGCTGTCTAAATTGGTGTATGTATGCTGCCTAATTTT-TGGTGAATCA
1 ATGCTGTCCAAATT-GTATATACATGCAGTCAAATTTTGT-GT-AA-AA
* * ** *
44595048 ATGCTGTCCAATTTTGTATATACATGCTGTTGAATTTTGTGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* * ** * * * *
44595094 GTGCTGTCCAAATTGGTGTATGTATGCTGCCTAATTTT-TGGTGAATCA
1 ATGCTGTCCAAATT-GTATATACATGCAGTCAAATTTTGT-GT-AA-AA
* * * * *
44595142 ATGTTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
* ** * * * *
44595188 GTGCTGTCCAAATTGGTATATGTATGCTGCCTAATTTT-TGGTGAATCA
1 ATGCTGTCCAAATT-GTATATACATGCAGTCAAATTTTGT-GT-AA-AA
* * * * *
44595236 ATGCTGTCCAATTTTGTATACACATGCTGTTAAATTTTGTGTATAA
1 ATGCTGTCCAA-ATTGTATATACATGCAGTCAAATTTTGTGTAAAA
*
44595282 GTGCTGTCCAAATTGGTATAT
1 ATGCTGTCCAAATT-GTATAT
44595303 GTATGCTGCC
Statistics
Matches: 323, Mismatches: 94, Indels: 55
0.68 0.20 0.12
Matches are distributed among these distances:
45 14 0.04
46 139 0.43
47 13 0.04
48 120 0.37
49 33 0.10
50 4 0.01
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (45 bp):
ATGCTGTCCAAATTGTATATACATGCAGTCAAATTTTGTGTAAAA
Found at i:44594957 original size:25 final size:24
Alignment explanation
Indices: 44594929--44595062 Score: 63
Period size: 23 Copynumber: 5.6 Consensus size: 24
44594919 TGGTGTATGT
44594929 ATGCTGCCTAATTTTTGGTGAATCA
1 ATGCTGCCTAATTTTTGGTGAAT-A
44594954 ATGCTGTCC-AA-TTTT-GT-ATATA
1 ATGCTG-CCTAATTTTTGGTGA-ATA
* *
44594976 CATGCTG-TTAAATTTT-GT-ATATA
1 -ATGCTGCCTAATTTTTGGTGA-ATA
* * * *
44594999 AGTGCTGTCTAA--ATTGGTGTATGT
1 A-TGCTGCCTAATTTTTGGTGAAT-A
44595023 ATGCTGCCTAATTTTTGGTGAATCA
1 ATGCTGCCTAATTTTTGGTGAAT-A
44595048 ATGCTGTCC-AATTTT
1 ATGCTG-CCTAATTTT
44595063 GTATATACAT
Statistics
Matches: 86, Mismatches: 10, Indels: 26
0.70 0.08 0.21
Matches are distributed among these distances:
22 7 0.08
23 39 0.45
24 8 0.09
25 28 0.33
26 4 0.05
ACGTcount: A:0.25, C:0.13, G:0.19, T:0.43
Consensus pattern (24 bp):
ATGCTGCCTAATTTTTGGTGAATA
Found at i:44594967 original size:94 final size:94
Alignment explanation
Indices: 44594859--44595391 Score: 904
Period size: 94 Copynumber: 5.6 Consensus size: 94
44594849 TTGATGTAAA
44594859 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
44594924 TATGTATGCTGCCTAATTTTTGGTGAATC
66 TATGTATGCTGCCTAATTTTTGGTGAATC
* *
44594953 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTATATAAGTGCTGTCTAAATTGGTG
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
44595018 TATGTATGCTGCCTAATTTTTGGTGAATC
66 TATGTATGCTGCCTAATTTTTGGTGAATC
*
44595047 AATGCTGTCCAATTTTGTATATACATGCTGTTGAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
44595112 TATGTATGCTGCCTAATTTTTGGTGAATC
66 TATGTATGCTGCCTAATTTTTGGTGAATC
* *
44595141 AATGTTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTA
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
44595206 TATGTATGCTGCCTAATTTTTGGTGAATC
66 TATGTATGCTGCCTAATTTTTGGTGAATC
* *
44595235 AATGCTGTCCAATTTTGTATACACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTA
1 AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
**
44595300 TATGTATGCTGCCTAATTTTTGGTGAAAAA
66 TATGTATGCTGCCTAATTTTTGGTG-AATC
* * * * *
44595330 ATATGCTGTCCAATTTTATATATATATGCTGCTCAATTTTTGATGTATAAGAGCTGTCCAAA
1 A-ATGCTGTCCAATTTTGTATATACATGCTG-TTAAATTTTG-TGTATAAGTGCTGTCCAAA
44595392 CAGGGAAGAT
Statistics
Matches: 417, Mismatches: 18, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
94 362 0.87
95 3 0.01
96 26 0.06
97 8 0.02
98 18 0.04
ACGTcount: A:0.26, C:0.13, G:0.19, T:0.42
Consensus pattern (94 bp):
AATGCTGTCCAATTTTGTATATACATGCTGTTAAATTTTGTGTATAAGTGCTGTCCAAATTGGTG
TATGTATGCTGCCTAATTTTTGGTGAATC
Found at i:44595892 original size:25 final size:24
Alignment explanation
Indices: 44595864--44595981 Score: 127
Period size: 25 Copynumber: 5.0 Consensus size: 24
44595854 TATTTTGATA
44595864 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAA-T
44595889 TTATTTGATGTAATAAAATAGAAT
1 TTATTTGATGTAATAAAATAGAAT
* * * ** *
44595913 TT-TTT--TTTAGTTATTTTG-AT
1 TTATTTGATGTAATAAAATAGAAT
44595933 ATTATTTGATGTAATAAAATAGAAGT
1 -TTATTTGATGTAATAAAATAGAA-T
44595959 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
44595982 ATTTTTTAAT
Statistics
Matches: 75, Mismatches: 12, Indels: 12
0.76 0.12 0.12
Matches are distributed among these distances:
20 2 0.03
21 9 0.12
22 3 0.04
23 3 0.04
24 10 0.13
25 47 0.63
26 1 0.01
ACGTcount: A:0.41, C:0.00, G:0.14, T:0.46
Consensus pattern (24 bp):
TTATTTGATGTAATAAAATAGAAT
Found at i:44595937 original size:70 final size:70
Alignment explanation
Indices: 44595854--44595988 Score: 261
Period size: 70 Copynumber: 1.9 Consensus size: 70
44595844 ATATTTTGAA
*
44595854 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAATTTTTTT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTTTT
44595919 TTAGT
66 TTAGT
44595924 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTTTT
1 TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTTTT
44595989 AATATTTTGA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.39, C:0.00, G:0.13, T:0.49
Consensus pattern (70 bp):
TATTTTGATATTATTTGATGTAATAAAATAGAAGTTTATTTGATGTAATAAAATAGAAATTTTTT
TTAGT
Found at i:44596001 original size:9 final size:9
Alignment explanation
Indices: 44595984--44596020 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
44595974 AAATAGAAAT
*
44595984 TTTTTAATA
1 TTTTGAATA
44595993 TTTTGAATA
1 TTTTGAATA
44596002 TTTTGAATA
1 TTTTGAATA
44596011 TTTTG-ATA
1 TTTTGAATA
44596019 TT
1 TT
44596021 ATTTGAGAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
8 5 0.19
9 22 0.81
ACGTcount: A:0.30, C:0.00, G:0.08, T:0.62
Consensus pattern (9 bp):
TTTTGAATA
Found at i:44596086 original size:23 final size:22
Alignment explanation
Indices: 44596051--44597317 Score: 950
Period size: 23 Copynumber: 57.2 Consensus size: 22
44596041 ATTAATACCC
44596051 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
* * *
44596074 TCTAATTAGAAACCTTAAACC--C
1 T-TAATTAAAAACCCT-AACCTAA
44596096 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
* * *
44596119 TTTAATTAGAAACCTTAAACC--C
1 -TTAATTAAAAACCCT-AACCTAA
44596141 TTAACTTAAAAACCCT-ACC---
1 TTAA-TTAAAAACCCTAACCTAA
* *
44596160 CTAA-TAAAAACCCTAACC--C
1 TTAATTAAAAACCCTAACCTAA
*
44596179 TTAACTTAAAAACCCTACCCTAA
1 TTAA-TTAAAAACCCTAACCTAA
* *
44596202 TTAAATTAAAAACTCTAACC--C
1 TT-AATTAAAAACCCTAACCTAA
*
44596223 TTAACTTAAAAACCCTAACGTAA
1 TTAA-TTAAAAACCCTAACCTAA
*
44596246 TTAAATTAAAAACCCTAACC--C
1 TT-AATTAAAAACCCTAACCTAA
*
44596267 TTATCTTAAAAACCCTAACCTAA
1 TTA-ATTAAAAACCCTAACCTAA
* *
44596290 TTAAATTAAAAACTCTAA-CT-C
1 TT-AATTAAAAACCCTAACCTAA
44596311 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
***
44596334 TTAAATTAAAAACCCTAACCCCC
1 TT-AATTAAAAACCCTAACCTAA
44596357 TTAAATTAAAAACCCTAACCTAA
1 TT-AATTAAAAACCCTAACCTAA
* *
44596380 TTAAATTAAAAACTCTAACC--C
1 TT-AATTAAAAACCCTAACCTAA
*
44596401 TTAACTTTAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
44596424 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
44596447 TTAAATTAAAAACCCTAACCCT--
1 TT-AATTAAAAACCCTAA-CCTAA
*
44596469 TAAATTAAAAACCCTAACCTAA
1 TTAATTAAAAACCCTAACCTAA
*
44596491 TTAAATTAAAAACTCTAACCTAA
1 TT-AATTAAAAACCCTAACCTAA
44596514 TTAAATTAAAAACCCTAATCC---
1 TT-AATTAAAAACCCTAA-CCTAA
44596535 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
* ***
44596558 TTAAATTAAAAATCCTAACCCCC
1 TT-AATTAAAAACCCTAACCTAA
44596581 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
44596604 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
*
44596627 TTAAATTAAAAACCCTAA-CT-C
1 TT-AATTAAAAACCCTAACCTAA
44596648 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
* *
44596671 TTTAATTAAAAATCTTAAACCCTAA
1 -TTAATTAAAAACCCT-AA-CCTAA
* *
44596696 --ACTAAAAAACCCTAACCTAA
1 TTAATTAAAAACCCTAACCTAA
* *
44596716 TTAAATTAAAAACTCTAACC--C
1 TT-AATTAAAAACCCTAACCTAA
44596737 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
*
44596760 TTAAATTAAAAACCCTAACC--C
1 TT-AATTAAAAACCCTAACCTAA
44596781 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
44596804 TTAAATTAAAAACCCTAACCT--
1 TT-AATTAAAAACCCTAACCTAA
44596825 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
*
44596848 TTAAATTAAAAACCCTAACC--C
1 TT-AATTAAAAACCCTAACCTAA
*
44596869 TTAACTTAAAAACCCCAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
* ***
44596892 TTAAATTAAAAACACTAACCCCC
1 TT-AATTAAAAACCCTAACCTAA
44596915 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
*
44596938 TTAACTTAAAAACCTTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
*
44596961 TTAAATTAAAAACCCTAACC--C
1 TT-AATTAAAAACCCTAACCTAA
44596982 TTAACTTAAAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
***
44597005 TTTAATTAAAAATTTTAAGCCCTAA
1 -TTAATTAAAAACCCTAA--CCTAA
* **
44597030 --ACTTAAAAACCCTAACC-CG
1 TTAATTAAAAACCCTAACCTAA
* * *
44597049 TTACTTAAAAACCTTAACC--C
1 TTAATTAAAAACCCTAACCTAA
**
44597069 TTAACTTAAAAACCCTAACCTCC
1 TTAA-TTAAAAACCCTAACCTAA
44597092 TTAAGTTAAAAA-CCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
44597114 TTAACTT-AAAACCCTAACCTAA
1 TTAA-TTAAAAACCCTAACCTAA
*
44597136 TTTAATTAAAAACCTTAAACCCTAA
1 -TTAATTAAAAACCCT-AA-CCTAA
* * *
44597161 --ACTTATAAACCCTAACC--C
1 TTAATTAAAAACCCTAACCTAA
***
44597179 TTAACTTAAAAACCCTAACCCCT
1 TTAA-TTAAAAACCCTAACCTAA
* *
44597202 TTAACTTAAAAACCTTAACC--C
1 TTAA-TTAAAAACCCTAACCTAA
* * **
44597223 TTAACTTAAAAACACTAA-ATCC
1 TTAA-TTAAAAACCCTAACCTAA
*
44597245 TTAACTTAAAAACCCTAACC--C
1 TTAA-TTAAAAACCCTAACCTAA
* *
44597266 TTAACTTAAAAACCTTAGCCTAA
1 TTAA-TTAAAAACCCTAACCTAA
*
44597289 TTAAATTAAAAACCCTAAACTAAA
1 TT-AATTAAAAACCCTAACCT-AA
44597313 TTAAT
1 TTAAT
44597318 AATTTTACTT
Statistics
Matches: 1022, Mismatches: 124, Indels: 196
0.76 0.09 0.15
Matches are distributed among these distances:
17 10 0.01
18 3 0.00
19 6 0.01
20 42 0.04
21 301 0.29
22 107 0.10
23 477 0.47
24 61 0.06
25 15 0.01
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.27
Consensus pattern (22 bp):
TTAATTAAAAACCCTAACCTAA
Found at i:44596220 original size:44 final size:44
Alignment explanation
Indices: 44596047--44597316 Score: 1130
Period size: 44 Copynumber: 28.7 Consensus size: 44
44596037 AACCATTAAT
* *
44596047 ACCCTTAACTTAAAAACCCTAACCTAATCT-AATTAGAAACCTTAA
1 ACCCTTAACTTAAAAACCCTAACCTAAT-TAAATTAAAAACCCT-A
* * *
44596092 ACCCTTAACTTAAAAACCCTAACCTAATTTAATTAGAAACCTTAA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-A
*
44596137 ACCCTTAACTTAAAAACCCT-ACC---CT-AA-TAAAAACCCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* *
44596175 ACCCTTAACTTAAAAACCCTACCCTAATTAAATTAAAAACTCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
*
44596219 ACCCTTAACTTAAAAACCCTAACGTAATTAAATTAAAAACCCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* *
44596263 ACCCTTATCTTAAAAACCCTAACCTAATTAAATTAAAAACTCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
*
44596307 ACTCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* *
44596351 ACCCCCTTAAATTAAAAACCCTAACCTAATTAAATTAAAAACTCTA
1 A--CCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* *
44596397 ACCCTTAACTTTAAAACCCTAACCTAATTAACTTAAAAACCCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * *
44596441 ACCTAATTAAATTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * *
44596485 ACCTAATTAAATTAAAAACTCTAACCTAATTAAATTAAAAACCCTA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* *
44596531 ATCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAATCCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
*
44596575 ACCCCCTTAACTTAAAAACCCTAACCTAATTAACTTAAAAACCCTA
1 A--CCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * * *
44596621 ACCTAATTAAATTAAAAACCCTAA-CT-CTTAACTTAAAAACCCTA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * * * *
44596665 ACCTAATTTAA-TTAAAAATCTTAAACCCT-A--AACTAAAAAACCCTA
1 ACC---CTTAACTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTA
* * * * *
44596710 ACCTAATTAAATTAAAAACTCTAACC--CTTAACTTAAAAACCCTA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * * *
44596754 ACCTAATTAAATTAAAAACCCTAACC--CTTAACTTAAAAACCCTA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * *
44596798 ACCTAATTAAATTAAAAACCCTAACCT--TTAACTTAAAAACCCTA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * * * *
44596842 ACCTAATTAAATTAAAAACCCTAACC--CTTAACTTAAAAACCCCA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * * *** *
44596886 ACCTAATTAAATTAAAAACACTAACCCCCTTAACTTAAAAACCCTA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* *
44596932 ACCTAATTAACTTAAAAACCTTAACCTAATTAAATTAAAAACCCTA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* ***
44596978 ACCCTTAACTTAAAAACCCTAACCTAATTTAATTAAAAATTTTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* ** * *
44597022 AGCCCTAAACTTAAAAACCCTAACC-CGTT-ACTTAAAAACCTTA
1 A-CCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
** *
44597065 ACCCTTAACTTAAAAACCCTAACCTCCTTAAGTTAAAAA-CCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * *
44597108 ACCTAATTAACTT-AAAACCCTAACCTAATTTAATTAAAAACCTTAA
1 ACC--CTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-A
* * * *
44597154 ACCCTAAACTTATAAACCCTAACC--CTTAACTTAAAAACCCTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * * *
44597196 ACCCCTTTAACTTAAAAACCTTAACC--CTTAACTTAAAAACACTAA
1 A-CCC-TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCT-A
* * * *
44597241 ATCCTTAACTTAAAAACCCTAACC--CTTAACTTAAAAACCTTA
1 ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
* * * *
44597283 GCCTAATTAAATTAAAAACCCTAAACTAAATTAA
1 ACC--CTTAACTTAAAAACCCTAACCT-AATTAA
44597317 TAATTTTACT
Statistics
Matches: 1074, Mismatches: 107, Indels: 86
0.85 0.08 0.07
Matches are distributed among these distances:
38 21 0.02
39 10 0.01
40 2 0.00
41 1 0.00
42 27 0.03
43 75 0.07
44 592 0.55
45 141 0.13
46 199 0.19
47 6 0.01
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.27
Consensus pattern (44 bp):
ACCCTTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
Found at i:44596257 original size:67 final size:68
Alignment explanation
Indices: 44596050--44597306 Score: 1075
Period size: 67 Copynumber: 18.9 Consensus size: 68
44596040 CATTAATACC
* * *
44596050 CTTAACTTAAAAACCCTAA-CCTAATCTAA-TTAGAAACCTTAAACCCTTAACTTAAAAACCCTA
1 CTTAACTTAAAAACCCTAACCCTAAT-TAACTTAAAAACCCT-AACCCTTAAATTAAAAACCCTA
44596113 ACCTAA
64 ACCT-A
* * *
44596119 TTTAA-TTAGAAACCTTAAACCC---TTAACTTAAAAACCCT-ACCC-T-AA-TAAAAACCCTAA
1 CTTAACTTAAAAACCCT-AACCCTAATTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAA
44596176 CC--
65 CCTA
* * *
44596178 CTTAACTTAAAAACCCT-ACCCTAATTAAATTAAAAACTCTAACCCTTAACTTAAAAACCCTAAC
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAC
*
44596242 GTA
66 CTA
* * * * *
44596245 ATTAAATTAAAAACCCTAACCC---TTATCTTAAAAACCCTAACCTAATTAAATTAAAAACTCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
44596307 A-CT-
64 ACCTA
*
44596310 CTTAACTTAAAAACCCTAA-CCTAATTAAATTAAAAACCCTAACCCCCTTAAATTAAAAACCCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAA--CCCTTAAATTAAAAACCCTA
44596374 ACCTA
64 ACCTA
* * * * * *
44596379 ATTAAATTAAAAACTCTAACCC---TTAACTTTAAAACCCTAACCTAATTAACTTAAAAACCCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
44596441 ACCTA
64 ACCTA
* * * * *
44596446 ATTAAATTAAAAACCCTAACCC---TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACTCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
44596508 ACCTA
64 ACCTA
* * * * *
44596513 ATTAAATTAAAAACCCTAATCC---TTAACTTAAAAACCCTAACCTAATTAAATTAAAAATCCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
**
44596575 ACCCC
64 ACCTA
*
44596580 CTTAACTTAAAAACCCTAA-CCTAATTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
44596644 A-CT-
64 ACCTA
* * *
44596647 CTTAACTTAAAAACCCTAA-CCTAATTTAA-TTAAAAATCTTAAACCC-TAAACTAAAAAACCCT
1 CTTAACTTAAAAACCCTAACCCTAA-TTAACTTAAAAACCCT-AACCCTTAAA-TTAAAAACCCT
44596709 AACCTA
63 AACCTA
* * * *
44596715 ATTAAATTAAAAACTCTAACCC---TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
44596777 ACC--
64 ACCTA
* * *
44596780 CTTAACTTAAAAACCCTAA-CCTAATTAAATTAAAAACCCTAACCTTTAACTTAAAAACCCTAAC
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAC
44596844 CTA
66 CTA
* * * * *
44596847 ATTAAATTAAAAACCCTAACCC---TTAACTTAAAAACCCCAACCTAATTAAATTAAAAACACTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
**
44596909 ACCCC
64 ACCTA
* *
44596914 CTTAACTTAAAAACCCTAA-CCTAATTAACTTAAAAACCTTAACCTAATTAAATTAAAAACCCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
44596978 ACC--
64 ACCTA
***
44596981 CTTAACTTAAAAACCCTAA-CCTAATTTAA-TTAAAAATTTTAAGCCC-TAAACTTAAAAACCCT
1 CTTAACTTAAAAACCCTAACCCTAA-TTAACTTAAAAACCCTAA-CCCTTAAA-TTAAAAACCCT
44597043 AACC--
63 AACCTA
* *
44597047 CGTT-ACTTAAAAACCTTAACCC---TTAACTTAAAAACCCTAACCTCCTTAAGTTAAAAA-CCT
1 C-TTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAA-C-CCTTAAATTAAAAACCCT
44597107 AACCTA
63 AACCTA
* * *
44597113 ATTAACTT-AAAACCCTAA-CCTAATTTAA-TTAAAAACCTTAAACCC-TAAACTTATAAACCCT
1 CTTAACTTAAAAACCCTAACCCTAA-TTAACTTAAAAACCCT-AACCCTTAAA-TTAAAAACCCT
44597174 AACC--
63 AACCTA
* * *
44597178 CTTAACTTAAAAACCCTAACCCCT--TTAACTTAAAAACCTTAACCCTTAACTTAAAAACACTAA
1 CTTAACTTAAAAACCCTAA-CCCTAATTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAA
* *
44597241 -ATC
65 CCTA
* * *
44597244 CTTAACTTAAAAACCCTAACCC---TTAACTTAAAAACCTTAGCCTAATTAAATTAAAAACCCTA
1 CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACC--CTTAAATTAAAAACCCTA
44597306 A
64 A
44597307 ACTAAATTAA
Statistics
Matches: 1007, Mismatches: 104, Indels: 157
0.79 0.08 0.12
Matches are distributed among these distances:
58 4 0.00
59 4 0.00
60 9 0.01
61 14 0.01
62 18 0.02
63 6 0.01
64 45 0.04
65 175 0.17
66 133 0.13
67 428 0.43
68 61 0.06
69 106 0.11
70 4 0.00
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.27
Consensus pattern (68 bp):
CTTAACTTAAAAACCCTAACCCTAATTAACTTAAAAACCCTAACCCTTAAATTAAAAACCCTAAC
CTA
Found at i:44597518 original size:115 final size:115
Alignment explanation
Indices: 44597311--44597552 Score: 387
Period size: 115 Copynumber: 2.1 Consensus size: 115
44597301 CCCTAAACTA
* * **
44597311 AATTAATAATTTTACTTTCACATAATGTTAGATTTGGAAAAATATTTTTCCTAGTACTAACAATT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATATTTTGACTAGTACTAACAATT
* *
44597376 AATTATTTTATATAATTTGATAATTTTACTAATCATTAATACAATTTATC
66 AATAATTTTATATAATTTGATAATTTTACTAACCATTAATACAATTTATC
* * *
44597426 AATTAATGATTTTACATTCACATAATTTTAGATTTAGAAAAATATTTTGACTGGTAC-AACAATT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATATTTTGACTAGTACTAACAATT
44597490 AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
66 AATAATTTTATATAATTTGATAA-TTTTACTAACCATTAATACAATTTATC
44597541 AATTAATAATTT
1 AATTAATAATTT
44597553 CACAAACTTA
Statistics
Matches: 116, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
114 29 0.25
115 87 0.75
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.45
Consensus pattern (115 bp):
AATTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATATTTTGACTAGTACTAACAATT
AATAATTTTATATAATTTGATAATTTTACTAACCATTAATACAATTTATC
Found at i:44600233 original size:32 final size:32
Alignment explanation
Indices: 44600165--44600233 Score: 111
Period size: 32 Copynumber: 2.2 Consensus size: 32
44600155 AATATAAGGT
*
44600165 AAAAAGCCTCAACCCTAAGCCCTAAAAACCCT
1 AAAAAGCCTCAACCCTAAGCCCTAAAAACCCA
* *
44600197 AAAAAGCCTCAACCCTAAGCCCTAAAAGCCGA
1 AAAAAGCCTCAACCCTAAGCCCTAAAAACCCA
44600229 AAAAA
1 AAAAA
44600234 CCTAACGTGG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.48, C:0.33, G:0.09, T:0.10
Consensus pattern (32 bp):
AAAAAGCCTCAACCCTAAGCCCTAAAAACCCA
Found at i:44601540 original size:25 final size:24
Alignment explanation
Indices: 44601505--44601551 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
44601495 TTCACTCTCA
44601505 TTTTTTTATTAAAATTGTATTAAG
1 TTTTTTTATTAAAATTGTATTAAG
**
44601529 TTTTTTTAATTAATTTTGTATTA
1 TTTTTTT-ATTAAAATTGTATTA
44601552 CAATTTTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 7 0.35
25 13 0.65
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.64
Consensus pattern (24 bp):
TTTTTTTATTAAAATTGTATTAAG
Found at i:44601558 original size:25 final size:25
Alignment explanation
Indices: 44601504--44601559 Score: 60
Period size: 25 Copynumber: 2.2 Consensus size: 25
44601494 ATTCACTCTC
*
44601504 ATTTTTTTATTAAAATTGTATTAAG
1 ATTTTTTAATTAAAATTGTATTAAG
* **
44601529 TTTTTTTAATTAATTTTGTATTACA-
1 ATTTTTTAATTAAAATTGTATTA-AG
44601554 ATTTTT
1 ATTTTT
44601560 ATTCGTATTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.62
Consensus pattern (25 bp):
ATTTTTTAATTAAAATTGTATTAAG
Found at i:44603163 original size:18 final size:19
Alignment explanation
Indices: 44603131--44603166 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
44603121 TTGTAAAAAT
44603131 ATAAAAAGAACTTAATTTC
1 ATAAAAAGAACTTAATTTC
*
44603150 ATAAAATGAA-TTAATTT
1 ATAAAAAGAACTTAATTT
44603167 TTTTGTTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.53, C:0.06, G:0.06, T:0.36
Consensus pattern (19 bp):
ATAAAAAGAACTTAATTTC
Found at i:44603891 original size:35 final size:35
Alignment explanation
Indices: 44603844--44603968 Score: 169
Period size: 35 Copynumber: 3.6 Consensus size: 35
44603834 TTTACAGTGT
*
44603844 TAACTGGTGTGCTGGATGGTACTGGCTCGTATGAG
1 TAACTGGTGTGCTGGATGGTACTGGCTCTTATGAG
* ** * *
44603879 CAACTGGTGTGCTAAATGGTACTAGCTTTTATGAG
1 TAACTGGTGTGCTGGATGGTACTGGCTCTTATGAG
*
44603914 TAACTGGTGTGCTGGATGGTACTGACTCTTATGAG
1 TAACTGGTGTGCTGGATGGTACTGGCTCTTATGAG
* *
44603949 TATCTGGTGTGTTGGATGGT
1 TAACTGGTGTGCTGGATGGT
44603969 TAACCATGTG
Statistics
Matches: 76, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 76 1.00
ACGTcount: A:0.19, C:0.13, G:0.33, T:0.35
Consensus pattern (35 bp):
TAACTGGTGTGCTGGATGGTACTGGCTCTTATGAG
Found at i:44608556 original size:39 final size:39
Alignment explanation
Indices: 44608502--44608579 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
44608492 TAAAGTTTGG
44608502 ATTGGTTGCTTTGTTTAGTCTTTTAGCCGCACCTCGATT
1 ATTGGTTGCTTTGTTTAGTCTTTTAGCCGCACCTCGATT
*
44608541 ATTGGTTGCTTTGTTTAGTCTTTTAGCCGTACCTCGATT
1 ATTGGTTGCTTTGTTTAGTCTTTTAGCCGCACCTCGATT
44608580 GTCTTCTTCA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (39 bp):
ATTGGTTGCTTTGTTTAGTCTTTTAGCCGCACCTCGATT
Found at i:44610725 original size:23 final size:23
Alignment explanation
Indices: 44610698--44610741 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
44610688 TTATTTAAAC
44610698 AAATACTCATATTTATATAATTA
1 AAATACTCATATTTATATAATTA
* *
44610721 AAATATTCATATTTTTATAAT
1 AAATACTCATATTTATATAAT
44610742 AGGTTAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.45, C:0.07, G:0.00, T:0.48
Consensus pattern (23 bp):
AAATACTCATATTTATATAATTA
Found at i:44611688 original size:6 final size:6
Alignment explanation
Indices: 44611677--44611703 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
44611667 CATATTTTTA
44611677 TAAAAT TAAAAT TAAAAT TAAAAT TAA
1 TAAAAT TAAAAT TAAAAT TAAAAT TAA
44611704 TAAGAACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
TAAAAT
Found at i:44612468 original size:34 final size:35
Alignment explanation
Indices: 44612402--44612468 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
44612392 CAAACACCAG
* *
44612402 AAAATATTTTCTAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATCTTACAGAAAAGT
* *
44612437 AAAATATTTTCCCG-AAATCATCTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATCTTACAGAAAA
44612469 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.45, C:0.13, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATCTTACAGAAAAGT
Found at i:44612914 original size:29 final size:30
Alignment explanation
Indices: 44612882--44612954 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
44612872 ACTTAACAAA
44612882 TTTAAAATTTAATAAATAAACTT-GTTTTT
1 TTTAAAATTTAATAAATAAACTTAGTTTTT
* * ****
44612911 TTTATAATTTTA-AAATCGTTTTAGTTTTT
1 TTTAAAATTTAATAAATAAACTTAGTTTTT
44612940 TTTAAAATTTAATAA
1 TTTAAAATTTAATAA
44612955 TCTTTTATTT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
28 6 0.18
29 26 0.76
30 2 0.06
ACGTcount: A:0.38, C:0.03, G:0.04, T:0.55
Consensus pattern (30 bp):
TTTAAAATTTAATAAATAAACTTAGTTTTT
Found at i:44612950 original size:28 final size:29
Alignment explanation
Indices: 44612905--44612961 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
44612895 AAATAAACTT
*
44612905 GTTTTTTTTATAATTTTAA-AATCGTTTTA
1 GTTTTTTTTATAAATTTAATAATC-TTTTA
44612934 GTTTTTTTTA-AAATTTAATAATCTTTTA
1 GTTTTTTTTATAAATTTAATAATCTTTTA
44612962 TTTCTTTGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (29 bp):
GTTTTTTTTATAAATTTAATAATCTTTTA
Found at i:44615241 original size:28 final size:28
Alignment explanation
Indices: 44615201--44615258 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
44615191 TTCTTCCAGC
44615201 TGGTGTTTTTCCTCTCTTTTGATGTTGT
1 TGGTGTTTTTCCTCTCTTTTGATGTTGT
44615229 TGGTGTTTTTCCTCTCTTTTGATGTTGT
1 TGGTGTTTTTCCTCTCTTTTGATGTTGT
44615257 TG
1 TG
44615259 ATGTATGATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.03, C:0.14, G:0.22, T:0.60
Consensus pattern (28 bp):
TGGTGTTTTTCCTCTCTTTTGATGTTGT
Found at i:44619715 original size:13 final size:13
Alignment explanation
Indices: 44619697--44619721 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
44619687 ATTTATAAGA
44619697 TTACATAATCAAT
1 TTACATAATCAAT
44619710 TTACATAATCAA
1 TTACATAATCAA
44619722 ATCAAATTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.16, G:0.00, T:0.36
Consensus pattern (13 bp):
TTACATAATCAAT
Found at i:44634487 original size:20 final size:21
Alignment explanation
Indices: 44634462--44634503 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
44634452 AATAAAAAGA
44634462 TGGAAACGAGCTC-ATTGAGC
1 TGGAAACGAGCTCAATTGAGC
*
44634482 TGGAAATGAGCTCAATTGAGC
1 TGGAAACGAGCTCAATTGAGC
44634503 T
1 T
44634504 CAACAAGCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.24
Consensus pattern (21 bp):
TGGAAACGAGCTCAATTGAGC
Found at i:44635674 original size:21 final size:23
Alignment explanation
Indices: 44635641--44635685 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
44635631 TTCTCATTCA
*
44635641 TTTTTCTTTCACTC-TCTTTTTC
1 TTTTTCTTCCACTCTTCTTTTTC
*
44635663 TTTTTC-TCCACTCTTGTTTTTC
1 TTTTTCTTCCACTCTTCTTTTTC
44635685 T
1 T
44635686 CACAATTTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.04, C:0.27, G:0.02, T:0.67
Consensus pattern (23 bp):
TTTTTCTTCCACTCTTCTTTTTC
Found at i:44635719 original size:19 final size:20
Alignment explanation
Indices: 44635680--44635722 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
44635670 CCACTCTTGT
44635680 TTTTCTCACAATTTTTGTTC
1 TTTTCTCACAATTTTTGTTC
*
44635700 TTTTCTCTCAATTTTT-TTC
1 TTTTCTCACAATTTTTGTTC
44635719 TTTT
1 TTTT
44635723 GAATCGTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 7 0.32
20 15 0.68
ACGTcount: A:0.12, C:0.19, G:0.02, T:0.67
Consensus pattern (20 bp):
TTTTCTCACAATTTTTGTTC
Found at i:44639204 original size:20 final size:21
Alignment explanation
Indices: 44639179--44639220 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
44639169 AATAAAAAGA
44639179 TGGAAACGAGCTC-ATTGAGC
1 TGGAAACGAGCTCAATTGAGC
* *
44639199 TGGAAATGAGGTCAATTGAGC
1 TGGAAACGAGCTCAATTGAGC
44639220 T
1 T
44639221 CAACAGGCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (21 bp):
TGGAAACGAGCTCAATTGAGC
Found at i:44641821 original size:20 final size:21
Alignment explanation
Indices: 44641796--44641837 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
44641786 AATAAATAGA
44641796 TGGAAACGAGCTC-ATTGAGC
1 TGGAAACGAGCTCAATTGAGC
* *
44641816 TGGAAATGAGGTCAATTGAGC
1 TGGAAACGAGCTCAATTGAGC
44641837 T
1 T
44641838 CAACAGGCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (21 bp):
TGGAAACGAGCTCAATTGAGC
Found at i:44644434 original size:20 final size:21
Alignment explanation
Indices: 44644409--44644450 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
44644399 AATAAAAAGA
44644409 TGGAAACGAGCTC-ATTGAGC
1 TGGAAACGAGCTCAATTGAGC
* *
44644429 TGGAAATGAGGTCAATTGAGC
1 TGGAAACGAGCTCAATTGAGC
44644450 T
1 T
44644451 CAACAGGCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.31, C:0.14, G:0.31, T:0.24
Consensus pattern (21 bp):
TGGAAACGAGCTCAATTGAGC
Found at i:44647052 original size:20 final size:21
Alignment explanation
Indices: 44647024--44647063 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
44647014 TAAAAAGATG
44647024 GAAACGAGCTC-ATTGAGCTA
1 GAAACGAGCTCTATTGAGCTA
*
44647044 GAAATGAGCTCTATTGAGCT
1 GAAACGAGCTCTATTGAGCT
44647064 TAACAAGCTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.33, C:0.17, G:0.25, T:0.25
Consensus pattern (21 bp):
GAAACGAGCTCTATTGAGCTA
Found at i:44650371 original size:23 final size:22
Alignment explanation
Indices: 44650320--44650382 Score: 58
Period size: 23 Copynumber: 2.7 Consensus size: 22
44650310 CCTCGTCTTT
*
44650320 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
44650342 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
44650365 TTCTTTTCAATTTCTTTT
1 TTCTTTTC--TTTCTTTT
44650383 CTGTTTCACA
Statistics
Matches: 34, Mismatches: 1, Indels: 11
0.74 0.02 0.24
Matches are distributed among these distances:
21 2 0.06
22 5 0.15
23 15 0.44
24 11 0.32
25 1 0.03
ACGTcount: A:0.11, C:0.22, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:44662083 original size:40 final size:39
Alignment explanation
Indices: 44662006--44662145 Score: 149
Period size: 40 Copynumber: 3.5 Consensus size: 39
44661996 AGCAACATTT
* *
44662006 TTAGCGGCGTTTGGACAAAAAACGCTACTAAAAATCAAGCA
1 TTAGCGGCGTTT-TAC-AAAAACGCCACTAAAAATCAAGCA
*
44662047 TTAGCGGCGCTTTTACAAAAACGCCACTAAAGATCAAGCA
1 TTAGCGGCG-TTTTACAAAAACGCCACTAAAAATCAAGCA
* * *
44662087 TTAGCGGCGCATATT-GAAAAACGCCGCTAAAAAT-AAGCA
1 TTAGCGGCG--TTTTACAAAAACGCCACTAAAAATCAAGCA
* *
44662126 TTAGTGGCGTTTTCCAAAAA
1 TTAGCGGCGTTTTACAAAAA
44662146 GCGTTGCAAA
Statistics
Matches: 85, Mismatches: 11, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
37 3 0.04
38 5 0.06
39 13 0.15
40 47 0.55
41 14 0.16
42 3 0.04
ACGTcount: A:0.39, C:0.21, G:0.19, T:0.21
Consensus pattern (39 bp):
TTAGCGGCGTTTTACAAAAACGCCACTAAAAATCAAGCA
Found at i:44662347 original size:82 final size:82
Alignment explanation
Indices: 44662208--44662395 Score: 234
Period size: 82 Copynumber: 2.3 Consensus size: 82
44662198 TTAACGGTAC
* * * *
44662208 TTTTTCAAAAGC-ACAGCTAATGTTCGGGGCTTTAGCGATGTTTTTTCAAAAGCGCCGCTAATGC
1 TTTTTCAAAAGCGCCA-CTAATGCTCGGGCCTTTAGCGACGTTTTTTCAAAAGCGCCGCTAATGC
*
44662272 TCGGTCCTTTAGCGGCAT
65 TCGGGCCTTTAGCGGCAT
* * *
44662290 TTTTTCAAAAGCGCCACTAATGCTCGGTCCTTTAGCGGCGTTTTTTCAAAAGTGCCGCTAATGCT
1 TTTTTCAAAAGCGCCACTAATGCTCGGGCCTTTAGCGACGTTTTTTCAAAAGCGCCGCTAATGCT
* * * *
44662355 TGGGCTTTTATCGGCGT
66 CGGGCCTTTAGCGGCAT
**
44662372 TTTTGAAAAAGCGCCACTAATGCT
1 TTTTTCAAAAGCGCCACTAATGCT
44662396 TGACTTTAGC
Statistics
Matches: 91, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
82 89 0.98
83 2 0.02
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.34
Consensus pattern (82 bp):
TTTTTCAAAAGCGCCACTAATGCTCGGGCCTTTAGCGACGTTTTTTCAAAAGCGCCGCTAATGCT
CGGGCCTTTAGCGGCAT
Found at i:44662425 original size:39 final size:40
Alignment explanation
Indices: 44662208--44662431 Score: 202
Period size: 41 Copynumber: 5.5 Consensus size: 40
44662198 TTAACGGTAC
* * * ** *
44662208 TTTTTCAAAAGCACAGCTAATGTTCGGGGCTTTAGCGATG
1 TTTTTCAAAAGCGCCGCTAATGCTCGGTCCTTTAGCGGTG
44662248 TTTTTTCAAAAGCGCCGCTAATGCTCGGTCCTTTAGCGGCAT-
1 -TTTTTCAAAAGCGCCGCTAATGCTCGGTCCTTTAGCGG--TG
* *
44662290 TTTTTCAAAAGCGCCACTAATGCTCGGTCCTTTAGCGGCG
1 TTTTTCAAAAGCGCCGCTAATGCTCGGTCCTTTAGCGGTG
* * * * * *
44662330 TTTTTTCAAAAGTGCCGCTAATGCTTGGGCTTTTATCGGCG
1 -TTTTTCAAAAGCGCCGCTAATGCTCGGTCCTTTAGCGGTG
* * * *
44662371 TTTTTGAAAAAGCGCCACTAATGCT-TG-ACTTTAGCGGTG
1 TTTTT-CAAAAGCGCCGCTAATGCTCGGTCCTTTAGCGGTG
*
44662410 TTTTTGAAAATGCGCCGCTAAT
1 TTTTTCAAAA-GCGCCGCTAAT
44662432 AATAAAATCT
Statistics
Matches: 153, Mismatches: 24, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
38 4 0.03
39 23 0.15
40 6 0.04
41 119 0.78
43 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.23, T:0.34
Consensus pattern (40 bp):
TTTTTCAAAAGCGCCGCTAATGCTCGGTCCTTTAGCGGTG
Found at i:44663541 original size:6 final size:7
Alignment explanation
Indices: 44663517--44663576 Score: 59
Period size: 7 Copynumber: 8.7 Consensus size: 7
44663507 ACAGTTTTGA
44663517 GTTTAGG
1 GTTTAGG
44663524 GTTTAGG
1 GTTTAGG
44663531 GTTTA-G
1 GTTTAGG
44663537 GTTTAGG
1 GTTTAGG
* *
44663544 GCTTGGG
1 GTTTAGG
* *
44663551 GATTGGG
1 GTTTAGG
*
44663558 GTTTAAG
1 GTTTAGG
*
44663565 GTTTAGA
1 GTTTAGG
44663572 GTTTA
1 GTTTA
44663577 CATTTTAGTG
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
6 6 0.14
7 38 0.86
ACGTcount: A:0.17, C:0.02, G:0.40, T:0.42
Consensus pattern (7 bp):
GTTTAGG
Found at i:44664021 original size:30 final size:31
Alignment explanation
Indices: 44663973--44664032 Score: 88
Period size: 30 Copynumber: 2.0 Consensus size: 31
44663963 TCGTGATTTG
*
44663973 AAATTTTAAAATATTTTAAA-TTTT-TTTTA
1 AAATTTTAAAAGATTTTAAACTTTTATTTTA
44664002 AAATTTTAAAAAGATTTTAAACTTTTATTTT
1 AAATTTT-AAAAGATTTTAAACTTTTATTTT
44664033 TATAATATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
29 7 0.26
30 12 0.44
31 4 0.15
32 4 0.15
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.55
Consensus pattern (31 bp):
AAATTTTAAAAGATTTTAAACTTTTATTTTA
Found at i:44668313 original size:43 final size:43
Alignment explanation
Indices: 44668253--44668343 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
44668243 TTTTGAGTTC
* * * * *
44668253 ATTA-CAAGATTTCCTTGATTAAGTAAATGTATTATGTCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
*
44668295 ATTACCAAGATTTACTTGATTAAGAAAATGCATTGTATATTTT
1 ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
44668338 ATTACC
1 ATTACC
44668344 TTGCATATGT
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 4 0.10
43 38 0.90
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAATGCATTATATATTTT
Found at i:44668674 original size:43 final size:43
Alignment explanation
Indices: 44668610--44668839 Score: 286
Period size: 43 Copynumber: 5.3 Consensus size: 43
44668600 AGATATATTT
* * *
44668610 TTTAGCAGCGTTTCT-AGGAAAAGCG-CTGCTAGAGGT-TTGGGTC
1 TTTAGCGGCGTTTGTGA-GAAAAGCGTC-GCTAAAGGTCTT-GGTC
*
44668653 TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCTTGGTC
* * **
44668696 TTTAGTGGCGTTTGTGGGAAAATTGTCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCTTGGTC
* * * *
44668739 TTTAGTGGCGTTTGTGAGAAAAGCGCCGCTAATGGTCTTGGTA
1 TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCTTGGTC
* *
44668782 TTTAGCGGCATTTGTGGGAAAAGCGTCGCTAAAGGTCTTGGTC
1 TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCTTGGTC
44668825 TTTAGCGGCGTTTGT
1 TTTAGCGGCGTTTGT
44668840 TTCTAAAAAC
Statistics
Matches: 162, Mismatches: 22, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
43 159 0.98
44 3 0.02
ACGTcount: A:0.20, C:0.15, G:0.33, T:0.33
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAGAAAAGCGTCGCTAAAGGTCTTGGTC
Found at i:44672842 original size:79 final size:78
Alignment explanation
Indices: 44672731--44672954 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
44672721 GCTACTCGTT
* * *
44672731 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAA-TGCCTTCGGGACTTAGCCCGG
*
44672796 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
44672811 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCAC-AATGCCTTCGGGACTTAGCCCGG
*
44672874 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * * *
44672889 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAATGCCTTCGGGACTTAGCCCGG
44672954 A
64 A
44672955 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 36 0.29
79 56 0.45
80 33 0.26
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:44672848 original size:39 final size:40
Alignment explanation
Indices: 44672731--44672954 Score: 271
Period size: 40 Copynumber: 5.7 Consensus size: 40
44672721 GCTACTCGTT
* *
44672731 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* * *
44672771 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
44672811 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
44672850 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * * *
44672889 CAAATGCCTTC-GGATCTTAGTCCGG-ATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAAT-TAGTAAC-TCGCA
44672930 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
44672955 CATCATTCAA
Statistics
Matches: 164, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
38 2 0.01
39 74 0.45
40 75 0.46
41 13 0.08
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:44681356 original size:115 final size:115
Alignment explanation
Indices: 44681068--44681796 Score: 859
Period size: 115 Copynumber: 6.4 Consensus size: 115
44681058 AAAATAAGCA
* * * * * * *
44681068 TTAGCGGCGATTTTAATAAAGCGCCACTAATGATCAGGGCTTTAGCGGCGTTTTCGCGAAAA-CG
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTT-GGGAAAAGCG
* * * * * * * *
44681132 CCACAAA--AACCTAATCCCAACGACGCCGTTTAATGAG--ATTCGGGGCT
65 CCGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGAT
* * * * * * ** *
44681179 TTTGCGGCGTTTGTAAGT-AAGCGCCGCTGATG-TTCCGGGCTTTTGCGGCGTTTTTAGTAAAGC
1 TTAGTGGCGTTT-TTAGTAAAGCGCCGCTAATGCTT-AGGGCTTTAGCGGCGTTTTGGGAAAAGC
* ** * * * **
44681242 GCCACAAAGAAAACCTAAGCCCAAAGACGCCGTTTTCTTAGC-CTTTGGGTCT
64 GCCGCAAAG-GGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGAT
44681294 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTT-GGGTCTTTAGCGGCGTTTTGGGAAAAGCG
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTAGGG-CTTTAGCGGCGTTTTGGGAAAAGCG
*
44681358 CCGCAAAGGGACCTAAGCCCGACGACGCCGTTTTATTAGCTTTTTGGGGAT
65 CCGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGAT
* * *
44681409 TTAGTGGCGTTTTTAGTGAAGCGCCGCTAATGCTTAGGGCTTTAGCAGCGTTTTGGGATAAGCGC
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTGGGAAAAGCGC
* * * * * *
44681474 CGCAAACGGACCTAAGCCCAACGACGTCGTTTTCTTAGC-CTTTAGGTAT
66 CGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGAT
* * *
44681523 TTAGTGGCGTTTTTGGTAAAGCGCTGCTAATGCTGAGGGCTTTAGCGGCGTTTTGGGAAAAGCGC
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTGGGAAAAGCGC
* *
44681588 CGCAAAGGGACCTTAGCCCAATGACGCCGTTTTATTAGCTTTTTGGGGAT
66 CGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGAT
* **
44681638 TTAGTGGCGGTTTTAGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTGTTAAAAGCGC
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTGGGAAAAGCGC
44681703 CGCAAAGGGACCTAAGCCCAAC-AGCGCCGTTTTATTAGCTTTTTGGGGAT
66 CGCAAAGGGACCTAAGCCCAACGA-CGCCGTTTTATTAGCTTTTTGGGGAT
* *
44681753 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTCAGGGATTTA
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTAGGGCTTTA
44681797 AAATAATTTA
Statistics
Matches: 532, Mismatches: 72, Indels: 24
0.85 0.11 0.04
Matches are distributed among these distances:
110 5 0.01
111 48 0.09
112 3 0.01
114 160 0.30
115 311 0.58
116 5 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (115 bp):
TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTGGGAAAAGCGC
CGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGAT
Found at i:44681531 original size:229 final size:230
Alignment explanation
Indices: 44681068--44681786 Score: 861
Period size: 229 Copynumber: 3.1 Consensus size: 230
44681058 AAAATAAGCA
* * * * * * *
44681068 TTAGCGGCGATTTTAATAAAGCGCCACTAATG-ATCAGGGCTTTAGCGGCGTTTTCGCGAAAA-C
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTGAGGGCTTTAGCGGCGTTTT-GGGAAAAGC
* * * * * * * * * *
44681131 GCCACAAA--AACCTAATCCCAACGACGCCGTTTAATGAG--ATTCGGGGCTTTTGCGGC-GTTT
65 GCCGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGATTTAGTGGCGGTTT
* * * * ** * *
44681191 GTAAGT-AAGCGCCGCTGATG-TTCCGGGCTTTTGCGGCGTTTTTAGTAAAGCGCCACAAA-GAA
130 -T-AGTAAAGCGCCGCTAATGCTT-AGGGCTTTAGCAGCGTTTTGGGAAAAGCGCCGCAAACG--
* * *
44681253 AACCTAAGCCCAAAGACGCCGTTTTCTTAGCCTTTGGGTCT
190 GACCTAAGCCCAACGACGCCGTTTTCTTAGCCTTTGGGTAT
*
44681294 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTG-GGTCTTTAGCGGCGTTTTGGGAAAAGCG
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTGAGGGCTTTAGCGGCGTTTTGGGAAAAGCG
* *
44681358 CCGCAAAGGGACCTAAGCCCGACGACGCCGTTTTATTAGCTTTTTGGGGATTTAGTGGCGTTTTT
66 CCGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGATTTAGTGGCGGTTTT
* *
44681423 AGTGAAGCGCCGCTAATGCTTAGGGCTTTAGCAGCGTTTTGGGATAAGCGCCGCAAACGGACCTA
131 AGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCAGCGTTTTGGGAAAAGCGCCGCAAACGGACCTA
* *
44681488 AGCCCAACGACGTCGTTTTCTTAGCCTTTAGGTAT
196 AGCCCAACGACGCCGTTTTCTTAGCCTTTGGGTAT
* *
44681523 TTAGTGGCGTTTTTGGTAAAGCGCTGCTAATGC-TGAGGGCTTTAGCGGCGTTTTGGGAAAAGCG
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTGAGGGCTTTAGCGGCGTTTTGGGAAAAGCG
* *
44681587 CCGCAAAGGGACCTTAGCCCAATGACGCCGTTTTATTAGCTTTTTGGGGATTTAGTGGCGGTTTT
66 CCGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGATTTAGTGGCGGTTTT
* ** *
44681652 AGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCGGCGTTTTGTTAAAAGCGCCGCAAAGGGACCTA
131 AGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCAGCGTTTTGGGAAAAGCGCCGCAAACGGACCTA
* * *
44681717 AGCCCAAC-AGCGCCGTTTTATTAGCTTTTTGGGGAT
196 AGCCCAACGA-CGCCGTTTTCTTAGC-CTTTGGGTAT
44681753 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCT
1 TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCT
44681787 CAGGGATTTA
Statistics
Matches: 425, Mismatches: 54, Indels: 23
0.85 0.11 0.05
Matches are distributed among these distances:
225 6 0.01
226 53 0.12
227 1 0.00
228 28 0.07
229 238 0.56
230 93 0.22
231 6 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (230 bp):
TTAGTGGCGTTTTTAGTAAAGCGCCGCTAATGCTTGAGGGCTTTAGCGGCGTTTTGGGAAAAGCG
CCGCAAAGGGACCTAAGCCCAACGACGCCGTTTTATTAGCTTTTTGGGGATTTAGTGGCGGTTTT
AGTAAAGCGCCGCTAATGCTTAGGGCTTTAGCAGCGTTTTGGGAAAAGCGCCGCAAACGGACCTA
AGCCCAACGACGCCGTTTTCTTAGCCTTTGGGTAT
Found at i:44682642 original size:102 final size:100
Alignment explanation
Indices: 44682458--44682649 Score: 271
Period size: 103 Copynumber: 1.9 Consensus size: 100
44682448 TCATGTTAGA
* *
44682458 GTTTAGGGTTTAGATTAATTAGTATATTTTAATTATATATTAAATAAGGTTTAGGGGTTAAGAGT
1 GTTTAGGGTTTAGATTAATTAGTATATTTTAATTATATATTAAATAAAGTTTAGGGGTTAAGAAT
44682523 TAAGGGTTAAAGGTTAGGGATTTAGGATTGGGTTATG
66 TAAGGGTT-AAGGTTAGGG-TTTAGGATTGGGTTATG
* *
44682560 GTTTAGGGTTTAGATTAATTAGTGT-TTGTTAATTTATATATTAAATAAAGTTTAGGGGTTAGGA
1 GTTTAGGGTTTAGATTAATTAGTATATT-TTAA-TTATATATTAAATAAAGTTTAGGGGTTAAGA
**
44682624 ATTTGGGGTT-AGGTTTAGGGTTTAGG
64 ATTAAGGGTTAAGG-TTAGGGTTTAGG
44682650 GTTTAGATTA
Statistics
Matches: 81, Mismatches: 6, Indels: 7
0.86 0.06 0.07
Matches are distributed among these distances:
101 11 0.14
102 34 0.42
103 36 0.44
ACGTcount: A:0.29, C:0.00, G:0.28, T:0.43
Consensus pattern (100 bp):
GTTTAGGGTTTAGATTAATTAGTATATTTTAATTATATATTAAATAAAGTTTAGGGGTTAAGAAT
TAAGGGTTAAGGTTAGGGTTTAGGATTGGGTTATG
Found at i:44682652 original size:14 final size:14
Alignment explanation
Indices: 44682609--44682655 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
44682599 ATTAAATAAA
44682609 GTTTAGGGGTTAGG
1 GTTTAGGGGTTAGG
*
44682623 AATTT-GGGGTTA-G
1 -GTTTAGGGGTTAGG
*
44682636 GTTTAGGGTTTAGG
1 GTTTAGGGGTTAGG
44682650 GTTTAG
1 GTTTAG
44682656 ATTAATTAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
12 3 0.11
13 7 0.26
14 14 0.52
15 3 0.11
ACGTcount: A:0.17, C:0.00, G:0.43, T:0.40
Consensus pattern (14 bp):
GTTTAGGGGTTAGG
Found at i:44682653 original size:83 final size:82
Alignment explanation
Indices: 44682534--44682772 Score: 322
Period size: 83 Copynumber: 2.9 Consensus size: 82
44682524 AAGGGTTAAA
* * *
44682534 GGTTAGGGATTTAGGA-TTGGGTTATGGTTTAGGGTTTAGATTAATTAGTGTTTGTTAATTTATA
1 GGTTAGAGATTT-GGAGTAGGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTGTTAATTTATA
*
44682598 TATTAAATAAAGTTTAGG
65 TATTAAATAAAATTTAGG
* * *
44682616 GGTTAG-GAATTTGGGGTTAGGTTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTGTTAATTTAC
1 GGTTAGAG-ATTTGGAG-TAGGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTGTTAATTTAT
44682680 ATATTAAATAAAATTTAGG
64 ATATTAAATAAAATTTAGG
* * * *
44682699 GGTTAGAGATTTGGAGTCGGGTTAGGGTTTAAGATTTAGATTAATTAGTACTTT-TTAATTTATA
1 GGTTAGAGATTTGGAGTAGGGTTAGGGTTTAGGGTTTAGATTAATTAGT-GTTTGTTAATTTATA
44682763 TATTAAATAA
65 TATTAAATAA
44682773 GTTCTTTATA
Statistics
Matches: 139, Mismatches: 13, Indels: 10
0.86 0.08 0.06
Matches are distributed among these distances:
81 3 0.02
82 58 0.42
83 77 0.55
84 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.25, T:0.44
Consensus pattern (82 bp):
GGTTAGAGATTTGGAGTAGGGTTAGGGTTTAGGGTTTAGATTAATTAGTGTTTGTTAATTTATAT
ATTAAATAAAATTTAGG
Found at i:44683012 original size:83 final size:85
Alignment explanation
Indices: 44682899--44683115 Score: 232
Period size: 84 Copynumber: 2.6 Consensus size: 85
44682889 ATTAAAATTT
* * * * *
44682899 TAAAATATTTT-GTGGCGTTTTCAATAAAAACGCC-CAAGGAT-T-CATTAAAATTTGCCAA-AG
1 TAAAATCTTTTAGTGGCGTTTTCTATGAAAACGCCGCAA-GATGTGAATTAAAATTGGCCAATA-
* *
44682959 CGGCGCCGTTTCTTTACTTGAA
64 CGGCGCCGTTTCTCTACTCGAA
* **
44682981 TAAAATCTTTTAGTGGCGTTTTGTATGAAAACGCCGCAA-ATGTGAATTAATGTTGGCCAATACG
1 TAAAATCTTTTAGTGGCGTTTTCTATGAAAACGCCGCAAGATGTGAATTAAAATTGGCCAATACG
44683045 GCGCCGTTTCTCTACTCGAA
66 GCGCCGTTTCTCTACTCGAA
* * * *
44683065 TGAAATCTTATAGTGGCGTTTTTTTAAGAAAACGCCGCAAGA-GTGAATTAA
1 TAAAATCTTTTAGTGGCG-TTTTCTATGAAAACGCCGCAAGATGTGAATTAA
44683116 TGTTTGGCAA
Statistics
Matches: 114, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
82 12 0.11
83 21 0.18
84 51 0.45
85 29 0.25
86 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.20, T:0.32
Consensus pattern (85 bp):
TAAAATCTTTTAGTGGCGTTTTCTATGAAAACGCCGCAAGATGTGAATTAAAATTGGCCAATACG
GCGCCGTTTCTCTACTCGAA
Found at i:44683050 original size:84 final size:85
Alignment explanation
Indices: 44682959--44683119 Score: 245
Period size: 84 Copynumber: 1.9 Consensus size: 85
44682949 TTTGCCAAAG
* * * *
44682959 CGGCGCCGTTTCTTTACTTGAATAAAATCTTTTAGTGGCG-TTTTGTATGAAAACGCCGCAA-AT
1 CGGCGCCGTTTCTCTACTCGAATAAAATCTTATAGTGGCGTTTTTGTAAGAAAACGCCGCAAGA-
44683022 GTGAATTAATGTTGGCCAATA
65 GTGAATTAATGTTGGCCAATA
* *
44683043 CGGCGCCGTTTCTCTACTCGAATGAAATCTTATAGTGGCGTTTTTTTAAGAAAACGCCGCAAGAG
1 CGGCGCCGTTTCTCTACTCGAATAAAATCTTATAGTGGCGTTTTTGTAAGAAAACGCCGCAAGAG
44683108 TGAATTAATGTT
66 TGAATTAATGTT
44683120 TGGCAATGTG
Statistics
Matches: 69, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
84 36 0.52
85 32 0.46
86 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34
Consensus pattern (85 bp):
CGGCGCCGTTTCTCTACTCGAATAAAATCTTATAGTGGCGTTTTTGTAAGAAAACGCCGCAAGAG
TGAATTAATGTTGGCCAATA
Found at i:44683138 original size:85 final size:84
Alignment explanation
Indices: 44682964--44683138 Score: 219
Period size: 85 Copynumber: 2.1 Consensus size: 84
44682954 CAAAGCGGCG
* * * *
44682964 CCGTTTCTTTACTTGAATAAAATCTTTTAGTGGCGTTTTGTATGAAAACGCCGCAAATGTGAATT
1 CCGTTTCTCTACTCGAATAAAATCTTATAGTGGCGTTTTGTAAGAAAACGCCGCAAATGTGAATT
* *
44683029 AATGTTGGCCAATACGGCG
66 AATGTTGGCCAATACGACA
* *
44683048 CCGTTTCTCTACTCGAATGAAATCTTATAGTGGCGTTTTTTTAAGAAAACGCCGCAAGA-GTGAA
1 CCGTTTCTCTACTCGAATAAAATCTTATAGTGGCG-TTTTGTAAGAAAACGCCGCAA-ATGTGAA
**
44683112 TTAATGTTTGG-CAATGTGACA
64 TTAATG-TTGGCCAATACGACA
44683133 CCGTTT
1 CCGTTT
44683139 GGCTTCATGA
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
84 31 0.40
85 42 0.54
86 5 0.06
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.34
Consensus pattern (84 bp):
CCGTTTCTCTACTCGAATAAAATCTTATAGTGGCGTTTTGTAAGAAAACGCCGCAAATGTGAATT
AATGTTGGCCAATACGACA
Found at i:44683443 original size:20 final size:20
Alignment explanation
Indices: 44683418--44683457 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
44683408 TTGAGGAAAG
44683418 AAATATTTTGTGGCATTTTT
1 AAATATTTTGTGGCATTTTT
*
44683438 AAATATTTTGTGGCGTTTTT
1 AAATATTTTGTGGCATTTTT
44683458 GATAAAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.23, C:0.05, G:0.17, T:0.55
Consensus pattern (20 bp):
AAATATTTTGTGGCATTTTT
Found at i:44683699 original size:106 final size:106
Alignment explanation
Indices: 44683509--44683700 Score: 273
Period size: 105 Copynumber: 1.8 Consensus size: 106
44683499 GCGCTGTTTA
44683509 TCTACTGGAATAAAATCTTATAGTGGCGTTTTTTATAAAAACGCCGCAAGAGTGAATTAATCTTT
1 TCTACTGGAATAAAATCTTATAGTGGCGTTTTTTATAAAAACGCCGCAAGAGTGAATTAATCTTT
***
44683574 GCCAATACGATGTCGTTTCTCTGCCAATATGGTGCCATTTC
66 GCCAATACGACACCGTTTCTCTGCCAATATGGTGCCATTTC
* * *
44683615 TCTACTGGAATGAAATCTTATAGTGGCG-TTTTTA-AGAAAACGCCGCAAGTGTGAATTAATGTT
1 TCTACTGGAATAAAATCTTATAGTGGCGTTTTTTATA-AAAACGCCGCAAGAGTGAATTAATCTT
* * *
44683678 TGTCAATGCGGCACCGTTT-TCTG
65 TGCCAATACGACACCGTTTCTCTG
44683701 TTCAGTACTC
Statistics
Matches: 76, Mismatches: 9, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
104 5 0.07
105 44 0.58
106 27 0.36
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34
Consensus pattern (106 bp):
TCTACTGGAATAAAATCTTATAGTGGCGTTTTTTATAAAAACGCCGCAAGAGTGAATTAATCTTT
GCCAATACGACACCGTTTCTCTGCCAATATGGTGCCATTTC
Found at i:44686330 original size:36 final size:36
Alignment explanation
Indices: 44686282--44686803 Score: 538
Period size: 36 Copynumber: 14.5 Consensus size: 36
44686272 TAGGTATCAC
* *
44686282 AAATTAAATAACTTACATTAA-TTACATAACTTACAA
1 AAATTACATAACTTACA-TAACTTACATAACTTACAT
*
44686318 AAATTA-AGTAACTTACATAACTTACATAAATTA-AGT
1 AAATTACA-TAACTTACATAACTTACATAACTTACA-T
* * *
44686354 AAATTAAATAACTTACATAACTTACATAAATTAAAT
1 AAATTACATAACTTACATAACTTACATAACTTACAT
* * *
44686390 AACTTACATAACTTACATAAATTAAATAACTTACAT
1 AAATTACATAACTTACATAACTTACATAACTTACAT
* * *
44686426 TAATTACATAACTTACAAAAATTA-AGTAACTTACAT
1 AAATTACATAACTTACATAACTTACA-TAACTTACAT
* * * *
44686462 AACTTACATAAATTA-AGTAAATTAAATAACTTACAT
1 AAATTACATAACTTACA-TAACTTACATAACTTACAT
* * * *
44686498 AACTTACATAAATTAAATATCTTACATAACTTACAT
1 AAATTACATAACTTACATAACTTACATAACTTACAT
* *
44686534 AACTTAAATAACTTACATAACTTACATAACTTACAT
1 AAATTACATAACTTACATAACTTACATAACTTACAT
* * *
44686570 AACTTACATAAATTAAATAACTTACATAACTTACAT
1 AAATTACATAACTTACATAACTTACATAACTTACAT
*
44686606 AAATTA-AGTAACTTACATAATTTACATAACTTACAT
1 AAATTACA-TAACTTACATAACTTACATAACTTACAT
* * *
44686642 AAATTAAATAACTTACATAACTTACATAAATCA-AGT
1 AAATTACATAACTTACATAACTTACATAACTTACA-T
* * *
44686678 AACTTACATAACTTACATAAATTAAATAACTTACAT
1 AAATTACATAACTTACATAACTTACATAACTTACAT
* * * *
44686714 GACTTACATAAATTA-AGTAACTTACATAACTTACAA
1 AAATTACATAACTTACA-TAACTTACATAACTTACAT
* * *
44686750 AAATTAAATAACTTACATAACTTACATAAATTAAAT
1 AAATTACATAACTTACATAACTTACATAACTTACAT
* **
44686786 AACTGGCATAACTTACAT
1 AAATTACATAACTTACAT
44686804 TATACATAAC
Statistics
Matches: 417, Mismatches: 54, Indels: 30
0.83 0.11 0.06
Matches are distributed among these distances:
35 10 0.02
36 400 0.96
37 7 0.02
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (36 bp):
AAATTACATAACTTACATAACTTACATAACTTACAT
Found at i:44686341 original size:27 final size:27
Alignment explanation
Indices: 44686307--44686803 Score: 548
Period size: 27 Copynumber: 17.7 Consensus size: 27
44686297 CATTAATTAC
* * * *
44686307 ATAACTTACAAAAATTA-AGTAACTTAC
1 ATAACTTACATAACTTACA-TAAATTAA
*
44686334 ATAACTTACATAAATTA-AGTAAATTAA
1 ATAACTTACATAACTTACA-TAAATTAA
44686361 ATAACTTACATAACTTACATAAATTAA
1 ATAACTTACATAACTTACATAAATTAA
44686388 ATAACTTACATAACTTACATAAATTAA
1 ATAACTTACATAACTTACATAAATTAA
*
44686415 ATAACTTACATTAATTACATAACTTACAAAAATTAA
1 AT-A---AC-----TTACATAACTTACATAAATTAA
*
44686451 GTAACTTACATAACTTACATAAATTAA
1 ATAACTTACATAACTTACATAAATTAA
* * * * *
44686478 GTAAATTAAATAACTTACATAACTTAC
1 ATAACTTACATAACTTACATAAATTAA
* * * * *
44686505 ATAAATTAAATATCTTACATAACTTAC
1 ATAACTTACATAACTTACATAAATTAA
* * *
44686532 ATAACTTAAATAACTTACATAACTTAC
1 ATAACTTACATAACTTACATAAATTAA
44686559 ATAACTTACATAACTTACATAAATTAA
1 ATAACTTACATAACTTACATAAATTAA
44686586 ATAACTTACATAACTTACATAAATTAAGTAACTTA
1 ATAACTTACATAACTTACATAAA-T---T-A---A
*
44686621 CATAATTTACATAACTTACATAAATTAA
1 -ATAACTTACATAACTTACATAAATTAA
*
44686649 ATAACTTACATAACTTACATAAATCAA
1 ATAACTTACATAACTTACATAAATTAA
*
44686676 GTAACTTACATAACTTACATAAATTAA
1 ATAACTTACATAACTTACATAAATTAA
*
44686703 ATAACTTACATGACTTACATAAATTAA
1 ATAACTTACATAACTTACATAAATTAA
* *
44686730 GTAACTTACATAACTTACAAAAATTAA
1 ATAACTTACATAACTTACATAAATTAA
44686757 ATAACTTACATAACTTACATAAATTAA
1 ATAACTTACATAACTTACATAAATTAA
**
44686784 ATAACTGGCATAACTTACAT
1 ATAACTTACATAACTTACAT
44686804 TATACATAAC
Statistics
Matches: 419, Mismatches: 32, Indels: 38
0.86 0.07 0.08
Matches are distributed among these distances:
27 360 0.86
28 4 0.01
31 4 0.01
32 4 0.01
35 3 0.01
36 44 0.11
ACGTcount: A:0.50, C:0.15, G:0.02, T:0.33
Consensus pattern (27 bp):
ATAACTTACATAACTTACATAAATTAA
Found at i:44686350 original size:63 final size:64
Alignment explanation
Indices: 44686282--44686787 Score: 612
Period size: 63 Copynumber: 8.0 Consensus size: 64
44686272 TAGGTATCAC
* * *
44686282 AAATTAAATAACTTACATTAA-TTACATAACTTACAAAAATTAAGTAACTTACATAACTTACAT
1 AAATTAAATAACTTACAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
* *
44686345 AAATTAAGTAAATTA-AATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
1 AAATTAAATAACTTACAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
* * *
44686408 AAATTAAATAACTTACATTAA-TTACATAACTTACAAAAATTAAGTAACTTACATAACTTACAT
1 AAATTAAATAACTTACAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
* * *
44686471 AAATTAAGTAAATTA-AATAACTTACATAACTTACATAAATTAAATATCTTACATAACTTACAT
1 AAATTAAATAACTTACAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
*
44686534 AACTTAAATAACTTACATAACTTACATAACTTACATAACTTACATAAATTAAATAACTTACATAA
1 AAATTAAATAAC-T---T-AC--A-ATAACTTACATAACTTACATAAATTAAATAACTTACATAA
44686599 CTTACAT
58 CTTACAT
* *
44686606 AAATTAAGTAACTTAC-ATAATTTACATAACTTACATAAATTAAATAACTTACATAACTTAC--
1 AAATTAAATAACTTACAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
* *
44686667 --A-TAAAT--C--A-AGTAACTTACATAACTTACATAAATTAAATAACTTACATGACTTACAT
1 AAATTAAATAACTTACAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
* * * * * * * *
44686723 AAATTAAGTAACTTAC-ATAACTTACAAAAATTAAATAACTTACATAACTTACATAAATTAAAT
1 AAATTAAATAACTTACAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
44686786 AA
1 AA
44686788 CTGGCATAAC
Statistics
Matches: 383, Mismatches: 37, Indels: 46
0.82 0.08 0.10
Matches are distributed among these distances:
54 43 0.11
56 1 0.00
58 5 0.01
59 5 0.01
61 1 0.00
62 8 0.02
63 252 0.66
64 5 0.01
67 3 0.01
68 2 0.01
71 2 0.01
72 56 0.15
ACGTcount: A:0.51, C:0.14, G:0.02, T:0.33
Consensus pattern (64 bp):
AAATTAAATAACTTACAATAACTTACATAACTTACATAAATTAAATAACTTACATAACTTACAT
Found at i:44692364 original size:15 final size:15
Alignment explanation
Indices: 44692344--44692377 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
44692334 AGCTGAAGTT
44692344 CAGAGGTTAAAAGAC
1 CAGAGGTTAAAAGAC
44692359 CAGAGGTTAAAAGAC
1 CAGAGGTTAAAAGAC
44692374 CAGA
1 CAGA
44692378 TGGCTCAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.47, C:0.15, G:0.26, T:0.12
Consensus pattern (15 bp):
CAGAGGTTAAAAGAC
Found at i:44692479 original size:21 final size:21
Alignment explanation
Indices: 44692455--44692514 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
44692445 AGCAAATGCG
* *
44692455 GCAGCGAGGGAAGCAGCGGTT
1 GCAGCGAGGGAAGCAGAGGCT
44692476 GCAGCGAGGGAAG-AGGAGGCT
1 GCAGCGAGGGAAGCA-GAGGCT
*
44692497 GCAGCGAGAGAAGCAGAG
1 GCAGCGAGGGAAGCAGAG
44692515 CAGAGCAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.03
21 32 0.94
22 1 0.03
ACGTcount: A:0.30, C:0.17, G:0.48, T:0.05
Consensus pattern (21 bp):
GCAGCGAGGGAAGCAGAGGCT
Found at i:44692893 original size:41 final size:42
Alignment explanation
Indices: 44692827--44692940 Score: 151
Period size: 41 Copynumber: 2.7 Consensus size: 42
44692817 GTTTTTATAC
* *
44692827 AAAAGCGCCGCTAAAAAACATGTTCTTTAGCGGCACTTA-AA
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCACTTAGAA
* * *
44692868 AAAAATGCTGCTAAAGATA-ATGTTCTTTAGCGGCGCTTAGAA
1 AAAAACGCCGCTAAAGA-ACATGTTCTTTAGCGGCACTTAGAA
*
44692910 AAAAACGCCGCTAAAGAACATGGTCTTTAGC
1 AAAAACGCCGCTAAAGAACATGTTCTTTAGC
44692941 AGCGTTTTTT
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
41 33 0.53
42 29 0.47
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCACTTAGAA
Found at i:44693036 original size:21 final size:21
Alignment explanation
Indices: 44693010--44693052 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
44693000 TTAGTGGCGT
* *
44693010 TAAAAAGCGCCGCTAAAGACC
1 TAAAAAACGCCGCAAAAGACC
*
44693031 TAAAAAACGCTGCAAAAGACC
1 TAAAAAACGCCGCAAAAGACC
44693052 T
1 T
44693053 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.47, C:0.26, G:0.16, T:0.12
Consensus pattern (21 bp):
TAAAAAACGCCGCAAAAGACC
Found at i:44694730 original size:15 final size:15
Alignment explanation
Indices: 44694712--44694743 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
44694702 TTGATCAATT
44694712 AAAAATTAAGTACTA
1 AAAAATTAAGTACTA
*
44694727 AAAAATTAAGTATTA
1 AAAAATTAAGTACTA
44694742 AA
1 AA
44694744 TTCTTACCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.28
Consensus pattern (15 bp):
AAAAATTAAGTACTA
Found at i:44704893 original size:21 final size:21
Alignment explanation
Indices: 44704867--44704909 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
44704857 GTCAACAAAG
44704867 ATAGCAACCATTAATCACATC
1 ATAGCAACCATTAATCACATC
44704888 ATAGCAACCATTAATCACATC
1 ATAGCAACCATTAATCACATC
44704909 A
1 A
44704910 AGATGGATGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.28, G:0.05, T:0.23
Consensus pattern (21 bp):
ATAGCAACCATTAATCACATC
Found at i:44714444 original size:16 final size:16
Alignment explanation
Indices: 44714423--44714456 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
44714413 CCAATATCCA
* *
44714423 ATTATCATATTTGCAC
1 ATTATCACATTTACAC
44714439 ATTATCACATTTACAC
1 ATTATCACATTTACAC
44714455 AT
1 AT
44714457 ATATTATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.35, C:0.21, G:0.03, T:0.41
Consensus pattern (16 bp):
ATTATCACATTTACAC
Found at i:44720740 original size:101 final size:102
Alignment explanation
Indices: 44720624--44720808 Score: 302
Period size: 101 Copynumber: 1.8 Consensus size: 102
44720614 AAAGTGATGG
* *
44720624 TCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TGATAGGTCGCATGTGTAGT
1 TCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGAT-GGTCACATGTGTAGT
44720687 ACTATGTGCAGGCTACTATGCGTACTGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACTGGATAGCTTCGA
* *
44720725 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTGTAGTA
1 TCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
*
44720790 CTATGTGTAGGCTACTATG
66 CTATGTGCAGGCTACTATG
44720809 TGAACCGGTA
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
101 39 0.51
102 34 0.44
103 4 0.05
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (102 bp):
TCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACTGGATAGCTTCGA
Found at i:44720752 original size:51 final size:49
Alignment explanation
Indices: 44720621--44720806 Score: 196
Period size: 51 Copynumber: 3.7 Consensus size: 49
44720611 GTGAAAGTGA
* * *
44720621 TGGTCACGTGCGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-ATGAT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATA-G-T
* * * *
44720671 AGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACTGGATAGCT
1 TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATAG-T
* * *
44720721 TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA-TCAGATAGT
1 T-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACT-GGATAGT
*
44720771 GATGGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 --TGGTCACATGTGTAGTACTATGTGCAGGCTACTA
44720807 TGTGAACCGG
Statistics
Matches: 113, Mismatches: 18, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
50 42 0.37
51 70 0.62
52 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (49 bp):
TGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATAGT
Found at i:44720884 original size:46 final size:43
Alignment explanation
Indices: 44720812--44720910 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 43
44720802 TACTATGTGA
*
44720812 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CC
* * *
44720855 ACCGGATATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
44720901 ACCGAGTATC
1 ACCG-GTATC
44720911 TGTTATTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 2 0.04
46 26 0.55
47 3 0.06
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:44724066 original size:33 final size:33
Alignment explanation
Indices: 44724020--44724092 Score: 87
Period size: 33 Copynumber: 2.2 Consensus size: 33
44724010 ACTTGGTCTG
*
44724020 TGTTTATAGTCCCAGCAAAC-TATCTCTGTTCCA
1 TGTTTATAGTCCCAACAAACTTA-CTCTGTTCCA
* *
44724053 TGTTTACTA-TCCCAACGAACTTACTCTGTTTCA
1 TGTTTA-TAGTCCCAACAAACTTACTCTGTTCCA
44724086 TGTTTAT
1 TGTTTAT
44724093 TGTCTCGGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
32 1 0.03
33 30 0.86
34 4 0.11
ACGTcount: A:0.23, C:0.25, G:0.11, T:0.41
Consensus pattern (33 bp):
TGTTTATAGTCCCAACAAACTTACTCTGTTCCA
Found at i:44724837 original size:16 final size:16
Alignment explanation
Indices: 44724794--44724840 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
44724784 AGAACAATTT
*
44724794 TTAAAGGTTAATTAAG
1 TTAAATGTTAATTAAG
* *
44724810 -TAATTTGATAATTAAG
1 TTAA-ATGTTAATTAAG
44724826 TTAAATGTTAATTAA
1 TTAAATGTTAATTAA
44724841 ACAAAAGATG
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
15 3 0.12
16 18 0.75
17 3 0.12
ACGTcount: A:0.45, C:0.00, G:0.13, T:0.43
Consensus pattern (16 bp):
TTAAATGTTAATTAAG
Done.