Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 135 of 199
Found at i:45047186 original size:115 final size:115
Alignment explanation
Indices: 45046984--45047214 Score: 302
Period size: 115 Copynumber: 2.0 Consensus size: 115
45046974 AATGAATTAT
* * * *
45046984 ATGTTGAATTGAGTTAAATTTATCCATATAGATCCAGTTAGACCTCGTACGGAGTTAGATCGAGG
1 ATGTTGAATTGAGTTAAATTTATCCATATAGATCCAATTAGACCTCATACGGAGTGAGATCGAGA
* * *
45047049 TAAAGTGAAAGTCTCAAATTAATTGCCT-TCGTATCTACGTATACTCGTCG
66 CAAAGAGAAAGTCTCAAATTAATCGCCTCT-GTATCTACGTATACTCGTCG
* * * ** *
45047099 ATGTTGTATTGCGTTAAATTTGTCTGTGTAGATCCAATTAGACCTCATACGGAGTGAGATCGAGA
1 ATGTTGAATTGAGTTAAATTTATCCATATAGATCCAATTAGACCTCATACGGAGTGAGATCGAGA
* * *
45047164 CAAAGAGACAGTCTCAGATTAATCGCCTCTGTATCTACTTATACTCGTCG
66 CAAAGAGAAAGTCTCAAATTAATCGCCTCTGTATCTACGTATACTCGTCG
45047214 A
1 A
45047215 GGTAAGTTCG
Statistics
Matches: 99, Mismatches: 16, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
115 98 0.99
116 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32
Consensus pattern (115 bp):
ATGTTGAATTGAGTTAAATTTATCCATATAGATCCAATTAGACCTCATACGGAGTGAGATCGAGA
CAAAGAGAAAGTCTCAAATTAATCGCCTCTGTATCTACGTATACTCGTCG
Found at i:45052613 original size:47 final size:47
Alignment explanation
Indices: 45052555--45052949 Score: 646
Period size: 47 Copynumber: 8.4 Consensus size: 47
45052545 CAGCCAACAC
45052555 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45052602 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
45052649 AGTGTATATATGTGATAAGGCCTAATGGCCGATATGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
45052696 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
45052743 AGTGCATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
45052790 AGTGTATATATGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
45052837 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * * *
45052884 AGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
45052931 AGTGCATAAATGTGATAAG
1 AGTGTATATATGTGATAAG
45052950 TCCCGAAGGG
Statistics
Matches: 327, Mismatches: 21, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 327 1.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:45052730 original size:24 final size:24
Alignment explanation
Indices: 45052703--45052778 Score: 61
Period size: 24 Copynumber: 3.2 Consensus size: 24
45052693 GAAAGTGTAT
45052703 ATGTGTGATAAGGCCTAATAGCCG
1 ATGTGTGATAAGGCCTAATAGCCG
* * **
45052727 ATGTGATGA-ATGTG--AAAGT-GCAT
1 ATGTG-TGATAAG-GCCTAA-TAGCCG
45052750 ATGTGTGATAAGGCCTAATAGCCG
1 ATGTGTGATAAGGCCTAATAGCCG
45052774 ATGTG
1 ATGTG
45052779 ATGAATGTGA
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
22 4 0.11
23 12 0.32
24 17 0.46
25 4 0.11
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (24 bp):
ATGTGTGATAAGGCCTAATAGCCG
Found at i:45053124 original size:37 final size:37
Alignment explanation
Indices: 45053072--45053146 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
45053062 GCTCTAAAGG
* *
45053072 CCCGATGACTACGTGTGG-GACTTTTGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGA-TTATGTCCGGGTAAGA
*
45053109 CCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
45053146 C
1 C
45053147 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
Found at i:45056499 original size:13 final size:13
Alignment explanation
Indices: 45056481--45056507 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45056471 ATGGTGCTCC
45056481 TTGGTAGACAAGT
1 TTGGTAGACAAGT
45056494 TTGGTAGACAAGT
1 TTGGTAGACAAGT
45056507 T
1 T
45056508 ATGCTTCCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33
Consensus pattern (13 bp):
TTGGTAGACAAGT
Found at i:45062607 original size:13 final size:13
Alignment explanation
Indices: 45062589--45062619 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
45062579 ATGCTCACAC
45062589 ATAACGAGACTTA
1 ATAACGAGACTTA
45062602 ATAACGAGACTTA
1 ATAACGAGACTTA
45062615 ATAAC
1 ATAAC
45062620 TTGTCCGCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.48, C:0.16, G:0.13, T:0.23
Consensus pattern (13 bp):
ATAACGAGACTTA
Found at i:45069196 original size:23 final size:23
Alignment explanation
Indices: 45069170--45069235 Score: 91
Period size: 22 Copynumber: 2.9 Consensus size: 23
45069160 TCGCTGGCGT
45069170 TGCTCCGGCGATCCATCCCGCGG
1 TGCTCCGGCGATCCATCCCGCGG
*
45069193 TGCTCC-GCGAT-CAGTCCGGCGG
1 TGCTCCGGCGATCCA-TCCCGCGG
*
45069215 CGCTCCGGCGATCCATCCCGC
1 TGCTCCGGCGATCCATCCCGC
45069236 ATATAGAAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 2 0.05
22 17 0.46
23 16 0.43
24 2 0.05
ACGTcount: A:0.09, C:0.44, G:0.30, T:0.17
Consensus pattern (23 bp):
TGCTCCGGCGATCCATCCCGCGG
Found at i:45069606 original size:42 final size:40
Alignment explanation
Indices: 45069374--45069821 Score: 178
Period size: 41 Copynumber: 10.8 Consensus size: 40
45069364 GGCCCGCCCA
* * *
45069374 TCGAGCACCATCGGCACCTTTGGTGCTTGGATTGTAC-GAGACC
1 TCGACCACCATCAGCACC-TTGGTGC-TGGA-TGTGCGGAG-CC
* *
45069417 GCGACCACCATCGGCACCTTGGTGCT-GATGT-CGGA--C
1 TCGACCACCATCAGCACCTTGGTGCTGGATGTGCGGAGCC
** *
45069453 TCGAGGA-CATCGGCACCTTGGGTAGCTGGATGTGCGG-GACC
1 TCGACCACCATCAGCACCTT-GGT-GCTGGATGTGCGGAG-CC
* * *
45069494 CCGA-CAGCATCAGGTACCTTGCGTCTGGCCTCGGATGTGCGG-GACC
1 TCGACCACCATCA-GCACCTTG-G--T-G-CT-GGATGTGCGGAG-CC
* * ***
45069540 GCGCAGCGGTATCAGGCACCTTGGTGCTTGGATGTGCGGAGCC
1 TCG-ACCACCATCA-GCACCTTGGTGC-TGGATGTGCGGAGCC
* * *
45069583 TCGGATCCACCGTC-GCACCTTGGTGGCTCGA-GTACGGAG-C
1 TC-GA-CCACCATCAGCACCTTGGT-GCTGGATGTGCGGAGCC
*
45069623 TCGAAGCACCATC-GCACC-TGGTGCTTGGATGTGCGGGAGCC
1 TCG-ACCACCATCAGCACCTTGGTGC-TGGATGTGC-GGAGCC
*
45069664 -CTGACCACCATCAGCA-CTTGGTGCGGGGAATGTGCGGAGCC
1 TC-GACCACCATCAGCACCTTGGTGC-TGG-ATGTGCGGAGCC
*
45069705 ATCGA-CAGCCATCGGCACCTTGGTGCTGGATGTGCGGAGCC
1 -TCGACCA-CCATCAGCACCTTGGTGCTGGATGTGCGGAGCC
** ** *
45069746 TTCGAGTAGAATC-GACACCTTGGGGCCTCGGATGTGCGGAGCCC
1 -TCGACCACCATCAG-CACCTTGGTG-CT-GGATGTGCGGAG-CC
* * *
45069790 TCGAGCCA-CATCTGCACTTTGGTGCTGCATGT
1 TCGA-CCACCATCAGCACCTTGGTGCTGGATGT
45069822 CGGGGAGACC
Statistics
Matches: 321, Mismatches: 42, Indels: 86
0.71 0.09 0.19
Matches are distributed among these distances:
35 12 0.04
36 8 0.02
37 5 0.02
38 13 0.04
39 23 0.07
40 22 0.07
41 71 0.22
42 50 0.16
43 69 0.21
44 13 0.04
45 3 0.01
46 16 0.05
47 2 0.01
48 14 0.04
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (40 bp):
TCGACCACCATCAGCACCTTGGTGCTGGATGTGCGGAGCC
Found at i:45077463 original size:42 final size:43
Alignment explanation
Indices: 45077412--45077526 Score: 144
Period size: 42 Copynumber: 2.7 Consensus size: 43
45077402 ACCCTGGTGG
*
45077412 CTCGAATGTGCGGGAGCTTCGAGCACCATCCGCACCTAGGCG-
1 CTCGGATGTGCGGGAGCTTCGAGCACCATCCGCACCTAGGCGC
* * * * *
45077454 GTCGGATGTGCCGGAGCCTT-GAGCACCATTCGCACCTTGGTGC
1 CTCGGATGTGCGGGAG-CTTCGAGCACCATCCGCACCTAGGCGC
*
45077497 CTCGGATGTGCGGGAGCCTCGAGCACCATC
1 CTCGGATGTGCGGGAGCTTCGAGCACCATC
45077527 GACTACTTTG
Statistics
Matches: 60, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
42 34 0.57
43 26 0.43
ACGTcount: A:0.17, C:0.32, G:0.32, T:0.19
Consensus pattern (43 bp):
CTCGGATGTGCGGGAGCTTCGAGCACCATCCGCACCTAGGCGC
Found at i:45077514 original size:43 final size:42
Alignment explanation
Indices: 45077400--45077526 Score: 148
Period size: 43 Copynumber: 3.0 Consensus size: 42
45077390 GAGCAGCATG
* *
45077400 GCACCCTGGTGGCTCGAATGTGCGGGAG-CTTCGAGCACCATCC
1 GCACCTTGGT-GCTCGGATGTGCGGGAGCCTT-GAGCACCATCC
* * * * *
45077443 GCACCTAGGCGGTCGGATGTGCCGGAGCCTTGAGCACCATTC
1 GCACCTTGGTGCTCGGATGTGCGGGAGCCTTGAGCACCATCC
*
45077485 GCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCACCATC
1 GCACCTTGGTG-CTCGGATGTGCGGGAGCCTTGAGCACCATC
45077527 GACTACTTTG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 33 0.48
43 36 0.52
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTTGAGCACCATCC
Found at i:45078087 original size:43 final size:42
Alignment explanation
Indices: 45077994--45078161 Score: 212
Period size: 42 Copynumber: 4.0 Consensus size: 42
45077984 AAAAGTCTCC
*
45077994 GGCACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATT
1 GGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATT
45078037 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-AGCCACCATT
1 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAG-CACCATT
* * **
45078079 GGCAACCTTGGTGCTCGGATGTGCGAGAGGCTCGAGCACCACC
1 GGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATT
* * * **
45078122 GACACATTGGTGCTAGGATGTGCGAAAGCCTCGAGCACCA
1 GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCA
45078162 AAGCTAAAGT
Statistics
Matches: 112, Mismatches: 10, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
41 2 0.02
42 63 0.56
43 45 0.40
44 2 0.02
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.19
Consensus pattern (42 bp):
GGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATT
Found at i:45078152 original size:85 final size:86
Alignment explanation
Indices: 45077997--45078161 Score: 217
Period size: 85 Copynumber: 1.9 Consensus size: 86
45077987 AGTCTCCGGC
* ** * * * *
45077997 ACCTTGGTGGCTCGGATATGCGGGAGCCTCGAGCACCATTGGCACCTTGGTGCTCGGATGTGCGG
1 ACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGCACCACCGACACATTGGTGCTAGGATGTGCGA
*
45078062 GAGCCTC-AGCCACCATTGGCA
66 AAGCCTCGAG-CACCATTGGCA
* *
45078083 ACCTTGGT-GCTCGGATGTGCGAGAGGCTCGAGCACCACCGACACATTGGTGCTAGGATGTGCGA
1 ACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGCACCACCGACACATTGGTGCTAGGATGTGCGA
45078147 AAGCCTCGAGCACCA
66 AAGCCTCGAGCACCA
45078162 AAGCTAAAGT
Statistics
Matches: 68, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
85 58 0.85
86 10 0.15
ACGTcount: A:0.19, C:0.28, G:0.33, T:0.19
Consensus pattern (86 bp):
ACCTTGGTGGCTCGGATATGCGAGAGCCTCGAGCACCACCGACACATTGGTGCTAGGATGTGCGA
AAGCCTCGAGCACCATTGGCA
Found at i:45083247 original size:43 final size:42
Alignment explanation
Indices: 45083104--45083255 Score: 171
Period size: 42 Copynumber: 3.6 Consensus size: 42
45083094 GGTGGCTTGA
* * * * *
45083104 ATGTGCGGGAGCCTCGATCAGCATCCGCACCTA-GACGGTCGG
1 ATGTGCCGGAGCCTCGAGCACCATCCGTACCTAGGA-GCTCGG
*
45083146 ATGTGCCGGAGCCTCGAGCACCATCCGTACCTAGGAGGTCGG
1 ATGTGCCGGAGCCTCGAGCACCATCCGTACCTAGGAGCTCGG
* * *
45083188 ATGTGCCAGAGCCTCGAGCACCATCCGTACCTTGGTGCCTCGG
1 ATGTGCCGGAGCCTCGAGCACCATCCGTACCTAGGAG-CTCGG
* * *
45083231 ATGCGCGGGAGGCTCGAGCACCATC
1 ATGTGCCGGAGCCTCGAGCACCATC
45083256 GGCAACTTTG
Statistics
Matches: 96, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
42 69 0.72
43 27 0.28
ACGTcount: A:0.18, C:0.32, G:0.32, T:0.17
Consensus pattern (42 bp):
ATGTGCCGGAGCCTCGAGCACCATCCGTACCTAGGAGCTCGG
Found at i:45083810 original size:42 final size:42
Alignment explanation
Indices: 45083726--45083868 Score: 126
Period size: 43 Copynumber: 3.4 Consensus size: 42
45083716 CAAGAGTCTC
* * *
45083726 CGGCACCTTGGTGGCTCGGATATGCAGGAGCCTTGAGCACCAT
1 CGGCACCTTGGT-GCTCAGATATACAGGAGCCTCGAGCACCAT
* *
45083769 CGGCACCTTGGTGCTCAGATGTACGGGAGCCTCG-GCCACCAT
1 CGGCACCTTGGTGCTCAGATATACAGGAGCCTCGAG-CACCAT
* ** * * * * *
45083811 CAGCAACCTTGGTGCTTGGATGTGCAAGAGGCTCGAGCACCAC
1 CGGC-ACCTTGGTGCTCAGATATACAGGAGCCTCGAGCACCAT
*
45083854 CGACACCTTGGTGCT
1 CGGCACCTTGGTGCT
45083869 AGGATGTGCG
Statistics
Matches: 82, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 37 0.45
43 43 0.52
44 1 0.01
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.20
Consensus pattern (42 bp):
CGGCACCTTGGTGCTCAGATATACAGGAGCCTCGAGCACCAT
Found at i:45083852 original size:43 final size:43
Alignment explanation
Indices: 45083730--45083894 Score: 151
Period size: 42 Copynumber: 3.9 Consensus size: 43
45083720 AGTCTCCGGC
* * *
45083730 ACCTTGGTGGCTCGGATATGCAGGAGCCTTGAGCACCATCGGC-
1 ACCTTGGT-GCTCGGATGTGCAGGAGCCTCGAGCACCATCAGCA
* * *
45083773 ACCTTGGTGCTCAGATGTACGGGAGCCTCG-GCCACCATCAGCA
1 ACCTTGGTGCTCGGATGTGCAGGAGCCTCGAG-CACCATCAGCA
* * * *
45083816 ACCTTGGTGCTTGGATGTGCAAGAGGCTCGAGCACCA-CCG-A
1 ACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCAGCA
* *
45083857 CACCTTGGTGCTAGGATGTGC-GGAAGCCTTGAGCACCA
1 -ACCTTGGTGCTCGGATGTGCAGG-AGCCTCGAGCACCA
45083895 AAGCTAAAGT
Statistics
Matches: 100, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
41 3 0.03
42 59 0.59
43 37 0.37
44 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.31, T:0.20
Consensus pattern (43 bp):
ACCTTGGTGCTCGGATGTGCAGGAGCCTCGAGCACCATCAGCA
Found at i:45083986 original size:15 final size:15
Alignment explanation
Indices: 45083966--45083996 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
45083956 AGACACATGA
45083966 ATGTCGCCTGGTAGC
1 ATGTCGCCTGGTAGC
45083981 ATGTCGCCTGGTAGC
1 ATGTCGCCTGGTAGC
45083996 A
1 A
45083997 GCGTAGTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.26, G:0.32, T:0.26
Consensus pattern (15 bp):
ATGTCGCCTGGTAGC
Found at i:45095726 original size:41 final size:41
Alignment explanation
Indices: 45095674--45095816 Score: 189
Period size: 42 Copynumber: 3.4 Consensus size: 41
45095664 GGTAGCTCGA
45095674 ATGTGCGGGAGCCTCGAGCACCAGT-CGCACCTAGGCGTCGG
1 ATGTGCGGGAGCCTCGAGCACCA-TCCGCACCTAGGCGTCGG
* *
45095715 ATGTGCCGGAGCCTCGAGCACCATCCGCACCTAGGAGGTCGG
1 ATGTGCGGGAGCCTCGAGCACCATCCGCACCTAGG-CGTCGG
** * *
45095757 ATGTGCTAGAGCCTCGAGCACCATCCGCACCTTGGTGCCTCGG
1 ATGTGCGGGAGCCTCGAGCACCATCCGCACC-TAG-GCGTCGG
45095800 ATGTGCGGGAGCCTCGA
1 ATGTGCGGGAGCCTCGA
45095817 ACATCATCGG
Statistics
Matches: 89, Mismatches: 9, Indels: 6
0.86 0.09 0.06
Matches are distributed among these distances:
40 1 0.01
41 32 0.36
42 34 0.38
43 21 0.24
44 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.34, T:0.17
Consensus pattern (41 bp):
ATGTGCGGGAGCCTCGAGCACCATCCGCACCTAGGCGTCGG
Found at i:45096379 original size:43 final size:41
Alignment explanation
Indices: 45096285--45096453 Score: 167
Period size: 42 Copynumber: 4.0 Consensus size: 41
45096275 CAAGAGTCTC
* * * *
45096285 CGGCACCTTGGTGGCTCAGATATGTGGGAGCCTCGAGCATCAT
1 CGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCG-GCACCAT
45096328 CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGCCACCAT
1 CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGG-CACCAT
* * * * *
45096370 CGGCAACCTTGGTGCTCGGATGTACGAGAGGCTCAAGCACCAC
1 CGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTC-GGCACCAT
** * *
45096413 CGATACCTTGGTGCTAGGATGTGCGGAAGCCTCGAGCACCA
1 CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCG-GCACCA
45096454 AAGCTAAAGT
Statistics
Matches: 105, Mismatches: 17, Indels: 9
0.80 0.13 0.07
Matches are distributed among these distances:
41 1 0.01
42 58 0.55
43 45 0.43
44 1 0.01
ACGTcount: A:0.19, C:0.29, G:0.33, T:0.20
Consensus pattern (41 bp):
CGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGGCACCAT
Found at i:45101426 original size:24 final size:24
Alignment explanation
Indices: 45101392--45101465 Score: 87
Period size: 24 Copynumber: 3.1 Consensus size: 24
45101382 CCGGTTAGGT
* * *
45101392 TCCCGGTGGTGCTCTGGCAATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
*
45101416 TCCCGGCGGTGCTCCGGCGATCAA
1 TCCCGGCGGTGCTCCGGCGATCCA
* *
45101440 T-CTGGCGGCGCTCCGGCGATCCA
1 TCCCGGCGGTGCTCCGGCGATCCA
45101463 TCC
1 TCC
45101466 TGGCATATAG
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
23 20 0.48
24 22 0.52
ACGTcount: A:0.11, C:0.38, G:0.31, T:0.20
Consensus pattern (24 bp):
TCCCGGCGGTGCTCCGGCGATCCA
Found at i:45101452 original size:23 final size:24
Alignment explanation
Indices: 45101415--45101469 Score: 76
Period size: 23 Copynumber: 2.3 Consensus size: 24
45101405 CTGGCAATCC
* *
45101415 ATCCCGGCGGTGCTCCGGCGATCA
1 ATCCTGGCGGCGCTCCGGCGATCA
*
45101439 AT-CTGGCGGCGCTCCGGCGATCC
1 ATCCTGGCGGCGCTCCGGCGATCA
45101462 ATCCTGGC
1 ATCCTGGC
45101470 ATATAGAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
23 20 0.74
24 7 0.26
ACGTcount: A:0.11, C:0.38, G:0.33, T:0.18
Consensus pattern (24 bp):
ATCCTGGCGGCGCTCCGGCGATCA
Found at i:45101654 original size:42 final size:42
Alignment explanation
Indices: 45101566--45102304 Score: 917
Period size: 42 Copynumber: 17.4 Consensus size: 42
45101556 AGTACATGGT
* * * * *
45101566 AGCATCGGCAACTTGGTGGTTCGGATGTTCGGGGGCCACGAGC
1 AGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC
* * ** *
45101609 ACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGAATCGACC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
*
45101651 ACCATCGGCACCTTGGTTGCTCGGATGTGCGGGAGCCTCGAGC
1 AGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGC
* *
45101694 AGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGG
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
* *
45101736 AGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
* *
45101778 CGCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGC
1 AGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC
* * * * *
45101821 AGCATCGACACCTTGGTGCTTGGATATGAGGGAGCCTCGACC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
* * *
45101863 ACCGTCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGC
1 AGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC
* * *
45101906 ACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GAGC
* * *
45101948 ACCATCGGCACCTTGGGGCTGGGATGTGCGGGAGCCTCGAGC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
*
45101990 AGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
* * *
45102032 AGTATCGACACCTTGGTGCCTCAGATGTGCGGGAGCCTCGAGC
1 AGCATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGC
* * * *
45102075 AGCATCTGCACCTTGGTGCTTGCATGTGAGGGAGCCTC-ATGC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA-GC
* *
45102117 ACCATCGGCACCTTGTTGGCTCGGATGTGCGGGAGCCTCGAGC
1 AGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC
* *
45102160 AGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGACC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
* *
45102202 AGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAACC
1 AGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC
* *
45102245 AGCATCGGCACCTTGGGGGCTCGAATGTGCGGGAGCCTCGTA-C
1 AGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCG-AGC
*
45102288 ACCATCGGCAACCTTGG
1 AGCATCGGC-ACCTTGG
45102305 CACCTGGGAT
Statistics
Matches: 608, Mismatches: 75, Indels: 26
0.86 0.11 0.04
Matches are distributed among these distances:
41 2 0.00
42 331 0.54
43 266 0.44
44 9 0.01
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (42 bp):
AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGC
Found at i:45101675 original size:85 final size:85
Alignment explanation
Indices: 45101566--45102304 Score: 952
Period size: 85 Copynumber: 8.7 Consensus size: 85
45101556 AGTACATGGT
* * * * * *
45101566 AGCATCGGCAACTTGGTGGTTCGGATGTTCGGGGGCCACGAGCACCATCGGCACCTTGGT-GCTT
1 AGCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTC
** *
45101630 GGATGTGCGGGAGAATCGACC
65 GGATGTGCGGGAGCCTCGAGC
* * *
45101651 ACCATCGGCACCTTGGTTGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGT-GCTT
1 AGCATCGGCACCTTGG-TGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTC
*
45101715 GGATGTGCGGGAGCCTCGAGG
65 GGATGTGCGGGAGCCTCGAGC
* *
45101736 AGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGC-CGCATCGGCACCTTGGTGGCTC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGTGGCTC
*
45101800 AGATGTGCGGGAGCCTCGAGC
65 GGATGTGCGGGAGCCTCGAGC
* * * * * *
45101821 AGCATCGACACCTTGGTGCTTGGATATGAGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCTCG
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCG
*
45101886 GATGTACGGGAGCCTCGAGC
66 GATGTGCGGGAGCCTCGAGC
* * * *
45101906 ACCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCGGCACCTTGG-GGCTG
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GAGCACCATCGGCACCTTGGTGGCTC
45101969 GGATGTGCGGGAGCCTCGAGC
65 GGATGTGCGGGAGCCTCGAGC
* ** * * *
45101990 AGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGTATCGACACCTTGGTGCCTCA
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCG
45102055 GATGTGCGGGAGCCTCGAGC
66 GATGTGCGGGAGCCTCGAGC
* * * * *
45102075 AGCATCTGCACCTTGGTGCTTGCATGTGAGGGAGCCTC-ATGCACCATCGGCACCTTGTTGGCTC
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGA-GCACCATCGGCACCTTGGTGGCTC
45102139 GGATGTGCGGGAGCCTCGAGC
65 GGATGTGCGGGAGCCTCGAGC
* * *
45102160 AGCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCG
1 AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCG
* *
45102225 GATGTGCGGGAGCCTCAACC
66 GATGTGCGGGAGCCTCGAGC
* *
45102245 AGCATCGGCACCTTGGGGGCTCGAATGTGCGGGAGCCTCGTA-CACCATCGGCAACCTTGG
1 AGCATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCG-AGCACCATCGGC-ACCTTGG
45102305 CACCTGGGAT
Statistics
Matches: 576, Mismatches: 66, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
84 115 0.20
85 419 0.73
86 34 0.06
87 8 0.01
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (85 bp):
AGCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGGCTCG
GATGTGCGGGAGCCTCGAGC
Found at i:45101934 original size:212 final size:211
Alignment explanation
Indices: 45101567--45102304 Score: 993
Period size: 212 Copynumber: 3.5 Consensus size: 211
45101557 GTACATGGTA
* * * * * * * *
45101567 GCATCGGCAACTTGGTGGTTCGGATGTTCGGGGGCCACGAGCACCATCGGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTCGG
** * *
45101632 ATGTGCGGGAGAATCGACCACCATCGGCACCTTGGTTGCTCGGATGTGCGGGAGCCTCGAGCAGC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGG-TGCTCGGATGTACGGGAGCCTCGAGCACC
*
45101697 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGGAGCATCGGCACCTTGGTGCTGGGATG
130 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATG
*
45101762 TGCGGGAGCCCCGAGCC
195 TGCGGGAGCCTCGAGCC
* *
45101779 GCATCGGCACCTTGGTGGCTCAGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTTGG
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTCGG
* * *
45101844 ATATGAGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACC
66 ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCTCGGATGTACGGGAGCCTCGAGCACC
* * *
45101909 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGGGCTGGGAT
130 ATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTC-GAGCAGCATCGGCACCTTGGTGCTGGGAT
*
45101973 GTGCGGGAGCCTCGAGCA
194 GTGCGGGAGCCTCGAGCC
* * *
45101991 GCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCAGTATCGACACCTTGGTGCCTCA
1 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTG-CTCG
* * * * *
45102055 GATGTGCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTTGCATGTGA-GGGAGCCTC-ATGCA
65 GATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATGT-ACGGGAGCCTCGA-GCA
* *
45102118 CCATCGGCACCTTGTTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGG
128 CCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGG
45102183 ATGTGCGGGAGCCTCGA-CC
192 ATGTGCGGGAGCCTCGAGCC
* * * *
45102202 AGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAACCAGCATCGGCACCTTGGGGGCTC
1 -GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTT-GGTGCTC
*
45102267 GAATGTGCGGGAGCCTCGTA-CACCATCGGCAACCTTGG
64 GGATGTGCGGGAGCCTCG-ACCACCATCGGC-ACCTTGG
45102305 CACCTGGGAT
Statistics
Matches: 464, Mismatches: 50, Indels: 22
0.87 0.09 0.04
Matches are distributed among these distances:
210 1 0.00
211 78 0.17
212 312 0.67
213 62 0.13
214 11 0.02
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (211 bp):
GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTCGG
ATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATGTACGGGAGCCTCGAGCACCA
TCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTGGGATGT
GCGGGAGCCTCGAGCC
Found at i:45101981 original size:254 final size:254
Alignment explanation
Indices: 45101608--45102281 Score: 1005
Period size: 254 Copynumber: 2.6 Consensus size: 254
45101598 GGGCCACGAG
* ** *
45101608 CACCATCGGCACCTTGGT-GCTTGGATGTGCGGGAGAATCGACCACCATCGGCACCTTGGTTGCT
1 CACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGG-TGCT
* * * *
45101672 CGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGGA
65 CGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGGGCTCGGATGTGCGGGAGCCTCGAGCA
* * *
45101737 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCCGCATCGGCACCTTGGTGGCTCAG
130 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCAGCATCGACACCTTGGTGCCTCAG
*
45101802 ATGTGCGGGAGCCTCGAGCAGCATC-GACACCTTGGTGCTTGGATATGAGGGAGCCTCGA-C
195 ATGTGCGGGAGCCTCGAGCAGCATCTG-CACCTTGGTGCTTGCATATGAGGGAGCCTC-ATC
* * *
45101862 CACCGTCGGCACCTTGGTGGCTCGGATGTACGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTT
1 CACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
* *
45101927 GGATGTGCGGGAGCC-CTGACCACCATCGGCACCTTGGGGCTGGGATGTGCGGGAGCCTCGAGCA
66 GGATGTGCGGGAGCCTC-GACCAGCATCGGCACCTTGGGGCTCGGATGTGCGGGAGCCTCGAGCA
* *
45101991 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAGTATCGACACCTTGGTGCCTCAG
130 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCAGCATCGACACCTTGGTGCCTCAG
* *
45102056 ATGTGCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTTGCATGTGAGGGAGCCTCATG
195 ATGTGCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTTGCATATGAGGGAGCCTCATC
* * *
45102116 CACCATCGGCACCTTGTTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGGCACCTTGGTGCTG
1 CACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
* *
45102181 GGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCAACCA
66 GGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGG-GGCTCGGATGTGCGGGAGCCTCGAGCA
* * *
45102246 GCATCGGCACCTTGGGGGCTCGAATGTGCGGGAGCC
130 GCATCGGCACCTT-GGTGCTGGGATGTGCGGGAGCC
45102282 TCGTACACCA
Statistics
Matches: 381, Mismatches: 32, Indels: 12
0.90 0.08 0.03
Matches are distributed among these distances:
253 2 0.01
254 285 0.75
255 75 0.20
256 19 0.05
ACGTcount: A:0.16, C:0.28, G:0.36, T:0.20
Consensus pattern (254 bp):
CACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTC
GGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGGGCTCGGATGTGCGGGAGCCTCGAGCAG
CATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCCCGAGCAGCATCGACACCTTGGTGCCTCAGA
TGTGCGGGAGCCTCGAGCAGCATCTGCACCTTGGTGCTTGCATATGAGGGAGCCTCATC
Found at i:45109696 original size:42 final size:42
Alignment explanation
Indices: 45109643--45109794 Score: 173
Period size: 42 Copynumber: 3.6 Consensus size: 42
45109633 GGTGGCTCGA
* *
45109643 ATGTGCGGGAGCCTCGAGCACCATCCGCACCTAGGTAGTCGG
1 ATGTGCCGGAGCCTCAAGCACCATCCGCACCTAGGTAGTCGG
* **
45109685 ATGTGCCGGAGCCTCAAGCACCATCCGTATTTAGG-AGGTCGG
1 ATGTGCCGGAGCCTCAAGCACCATCCGCACCTAGGTA-GTCGG
* * * *
45109727 ATGTGCCGGAGCCTCGAGCACCATCCACACCTTGGT-GCCTCAG
1 ATGTGCCGGAGCCTCAAGCACCATCCGCACCTAGGTAG--TCGG
*
45109770 ATGTGCGGGAGCCTCAAGCACCATC
1 ATGTGCCGGAGCCTCAAGCACCATC
45109795 GGCAACTTTG
Statistics
Matches: 92, Mismatches: 14, Indels: 7
0.81 0.12 0.06
Matches are distributed among these distances:
41 2 0.02
42 64 0.70
43 26 0.28
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (42 bp):
ATGTGCCGGAGCCTCAAGCACCATCCGCACCTAGGTAGTCGG
Found at i:45115592 original size:24 final size:24
Alignment explanation
Indices: 45115565--45115637 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 24
45115555 CCGGTTAGGT
45115565 TCCCAGCGGTGCTCCGGAGATCCA
1 TCCCAGCGGTGCTCCGGAGATCCA
* *
45115589 TCCCGGCGGTGCTCCAGCA-ATCCA
1 TCCCAGCGGTGCTCC-GGAGATCCA
** *
45115613 T-CCAGCGGCACTCCGGCGATCCA
1 TCCCAGCGGTGCTCCGGAGATCCA
45115636 TC
1 TC
45115638 TTGGCTTATA
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
22 1 0.03
23 16 0.41
24 20 0.51
25 2 0.05
ACGTcount: A:0.16, C:0.41, G:0.26, T:0.16
Consensus pattern (24 bp):
TCCCAGCGGTGCTCCGGAGATCCA
Found at i:45115813 original size:42 final size:42
Alignment explanation
Indices: 45115741--45116536 Score: 866
Period size: 42 Copynumber: 18.7 Consensus size: 42
45115731 CACATGGCCG
*
45115741 CATCAGCACCTTGGTGGCTCGGATGTGCGGG-GACCTCGAGCAC
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAG-CCTCGAGCAC
* *
45115784 CATCGGCACCTTGGTGCTTGGATGTGCGGGAGCCTCGACCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
*
45115826 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * * * *
45115869 TATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGGAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * * * *
45115911 CATCGACACCTTAGTGCTGGGATGTGCAGGAGCCCCGAGC-C
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
**
45115952 GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGG
1 -CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
45115996 TATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGACCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
45116038 CGTCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGCAC
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* *
45116081 TATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTG-GCCAC
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTC-GAG-CAC
* * *
45116123 CATCGGCACCTTGGTGCTAGGATGTGCGGGAGCCTCGAGTAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * * * * *
45116165 CATTGGGACCTTGGTGCTGGGATGTGTGGGAGCCTCGATCAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
45116207 CATCGACACCTTGGTGCCTCGGATGTGTGGGAGCCTCGAGTAG
1 CATCGGCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
45116250 CATCTGCACCTTGGTGCTTGTATGT-CGGGGAGCCTCGTGCAC
1 CATCGGCACCTTGGTGCTCGGATGTGC-GGGAGCCTCGAGCAC
* * * * *
45116292 CATCGGCACCTTGTTGGCTTGGATGTACGGGAGCCTCAAGCAG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * * *
45116335 CATCGACACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAG
1 CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
45116377 CATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAG
1 CATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGCAC
* * *
45116420 CATCGACACCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACAC
1 CATCGGCACCTT-GGTGCTCGGATGTGCGGGAGCCTCGAG-CAC
* *
45116463 TATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTCGAGCAC
1 CATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
* *
45116506 CATCGGTACCTTGGTGCCTGGGATGTGCGGG
1 CATCGGCACCTTGGTG-CTCGGATGTGCGGG
45116537 CTAAAGAAAA
Statistics
Matches: 639, Mismatches: 94, Indels: 40
0.83 0.12 0.05
Matches are distributed among these distances:
41 2 0.00
42 323 0.51
43 305 0.48
44 9 0.01
ACGTcount: A:0.15, C:0.27, G:0.36, T:0.22
Consensus pattern (42 bp):
CATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCAC
Found at i:45115847 original size:85 final size:84
Alignment explanation
Indices: 45115740--45116536 Score: 906
Period size: 85 Copynumber: 9.4 Consensus size: 84
45115730 GCACATGGCC
* * *
45115740 GCATCAGCACCTTGGTGGCTCGGATGTGCGGG-GACCTCGAGCACCATCGGCACCTTGGTGCTTG
1 GCATCGGCACCTTGGT-GCTGGGATGTGCGGGAG-CCTCGAGCACCATCGGCACCTTGGTGCTCG
*
45115804 GATGTGCGGGAGCCTCGACCA
64 GATGTGCGGGAGCCTCGAGCA
* * ** *
45115825 CCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGTATCGGCACCTTGGTGCTTGG
1 GCATCGGCACCTTGGT-GCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGG
* *
45115890 ATGTACGGGAGCCTCGAGGA
65 ATGTGCGGGAGCCTCGAGCA
* * * *
45115910 GCATCGACACCTTAGTGCTGGGATGTGCAGGAGCCCCGAGC-CGCATCGGCACCTTGGTGGCTCG
1 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCAC-CATCGGCACCTTGGT-GCTCG
*
45115974 GATGTGCGGGAGCCTCGAGCG
64 GATGTGCGGGAGCCTCGAGCA
* * * * * *
45115995 GTATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCTCAG
1 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGG
*
45116060 ATGTGTGGGAGCCTCGAGCA
65 ATGTGCGGGAGCCTCGAGCA
* *
45116080 -CTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTG-GCCACCATCGGCACCTTGGTGCTA
1 GC-ATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTC-GAG-CACCATCGGCACCTTGGTGCTC
*
45116142 GGATGTGCGGGAGCCTCGAGTA
63 GGATGTGCGGGAGCCTCGAGCA
* * * * * *
45116164 GCATTGGGACCTTGGTGCTGGGATGTGTGGGAGCCTCGATCAGCATCGACACCTTGGTGCCTCGG
1 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTG-CTCGG
* *
45116229 ATGTGTGGGAGCCTCGAGTA
65 ATGTGCGGGAGCCTCGAGCA
* * * * * *
45116249 GCATCTGCACCTTGGTGCTTGTATGT-CGGGGAGCCTCGTGCACCATCGGCACCTTGTTGGCTTG
1 GCATCGGCACCTTGGTGCTGGGATGTGC-GGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCG
* *
45116313 GATGTACGGGAGCCTCAAGCA
64 GATGTGCGGGAGCCTCGAGCA
* * *
45116334 GCATCGACACCTTGGTGCTGGGATGTGCGGGAGCCTCGACCAGCATCGGCACCTTGGTGGCTCGG
1 GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGT-GCTCGG
*
45116399 ATGTGCGGGAGCCTCGACCA
65 ATGTGCGGGAGCCTCGAGCA
* * * * * *
45116419 GCATCGACACCTTGGGGGCTCGGATGTGTGGGAGCCTCG-GACACTATCGGCAACCTTGGTGCTT
1 GCATCGGCACCTT-GGTGCTGGGATGTGCGGGAGCCTCGAG-CACCATCGGC-ACCTTGGTGCTC
45116483 GGATGTGCGGGAGCCTCGAGCA
63 GGATGTGCGGGAGCCTCGAGCA
* *
45116505 CCATCGGTACCTTGGTGCCTGGGATGTGCGGG
1 GCATCGGCACCTTGGTG-CTGGGATGTGCGGG
45116537 CTAAAGAAAA
Statistics
Matches: 604, Mismatches: 90, Indels: 35
0.83 0.12 0.05
Matches are distributed among these distances:
84 106 0.18
85 410 0.68
86 80 0.13
87 8 0.01
ACGTcount: A:0.15, C:0.27, G:0.36, T:0.22
Consensus pattern (84 bp):
GCATCGGCACCTTGGTGCTGGGATGTGCGGGAGCCTCGAGCACCATCGGCACCTTGGTGCTCGGA
TGTGCGGGAGCCTCGAGCA
Found at i:45116104 original size:212 final size:211
Alignment explanation
Indices: 45115737--45116536 Score: 1002
Period size: 212 Copynumber: 3.8 Consensus size: 211
45115727 GGAGCACATG
* * *
45115737 GCCGCATCAGCACCTTGGTGGCTCGGATGTGCGGG-GACCTCGAGCACCATCGGCACCTTGGTGC
1 GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAG-CCTCGAGCAGCATCGACACCTTGGTGC
*
45115801 TTGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAG
65 TCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAG
** * *
45115866 CAGTATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGGAGCATCGACACCTTAGTGCTGG
129 CACCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTGG
* *
45115931 GATGTGCAGGAGCCCCGA
194 GATGTGCGGGAGCCTCGA
* * *
45115949 GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCGGTATCGGCACCTTGGTGCT
1 GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCT
* * * * *
45116014 TGGATGTACGGGAGCCTCGACCACCGTCGGCACCTTGGTGGCTCAGATGTGTGGGAGCCTCGAGC
66 CGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGT-GCTCGGATGTGCGGGAGCCTCGAGC
* * * * *
45116079 ACTATCGGCACCTTGGTGCTTGGATGTGCGGGAGCC-CTG-GCCACCATCGGCACCTTGGTGCTA
130 ACCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTC-GAG-CAGCATCGACACCTTGGTGCTG
45116142 GGATGTGCGGGAGCCTCGA
193 GGATGTGCGGGAGCCTCGA
** * * * * *
45116161 GTAGCATTGGGACCTTGGT-GCTGGGATGTGTGGGAGCCTCGATCAGCATCGACACCTTGGTGCC
1 GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTG-C
* ** * * * * *
45116225 TCGGATGTGTGGGAGCCTCGAGTAGCATCTGCACCTTGGTGCTTGTATGT-CGGGGAGCCTCGTG
65 TCGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATGTGC-GGGAGCCTCGAG
* *
45116289 CACCATCGGCACCTTGTTGGCTTGGATGTACGGGAGCCTCAAGCAGCATCGACACCTTGGTGCTG
129 CACCATCGGCACCTTGGT-GCTTGGATGTACGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTG
45116354 GGATGTGCGGGAGCCTCGA
193 GGATGTGCGGGAGCCTCGA
* *
45116373 -CCAGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGACCAGCATCGACACCTTGGGGG
1 GCC-GCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTT-GGTG
* * *
45116437 CTCGGATGTGTGGGAGCCTCGGA-CACTATCGGCAACCTTGGTGCTTGGATGTGCGGGAGCCTCG
64 CTCGGATGTGCGGGAGCCTC-GACCACCATCGGC-ACCTTGGTGCTCGGATGTGCGGGAGCCTCG
* * *
45116501 AGCACCATCGGTACCTTGGTGCCTGGGATGTGCGGG
127 AGCACCATCGGCACCTTGGTG-CTTGGATGTACGGG
45116537 CTAAAGAAAA
Statistics
Matches: 508, Mismatches: 65, Indels: 28
0.85 0.11 0.05
Matches are distributed among these distances:
211 73 0.14
212 307 0.60
213 66 0.13
214 61 0.12
215 1 0.00
ACGTcount: A:0.15, C:0.27, G:0.36, T:0.22
Consensus pattern (211 bp):
GCCGCATCGGCACCTTGGTGGCTCGGATGTGCGGGAGCCTCGAGCAGCATCGACACCTTGGTGCT
CGGATGTGCGGGAGCCTCGACCACCATCGGCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCA
CCATCGGCACCTTGGTGCTTGGATGTACGGGAGCCTCGAGCAGCATCGACACCTTGGTGCTGGGA
TGTGCGGGAGCCTCGA
Found at i:45129850 original size:38 final size:39
Alignment explanation
Indices: 45129766--45129856 Score: 123
Period size: 40 Copynumber: 2.3 Consensus size: 39
45129756 GCTACTCGTT
*
45129766 CAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACATAACCCAGTTATAG-AACTCGCA
* *
45129806 CAAATGCCTTCGGGACTTAACCCGGATT-TAG-ACTCGCA
1 CAAATGCCTTCGGGACATAACCCAG-TTATAGAACTCGCA
45129844 CAAATGCCTTCGG
1 CAAATGCCTTCGG
45129857 ATCTTAGTCT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
38 20 0.43
40 25 0.53
41 2 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (39 bp):
CAAATGCCTTCGGGACATAACCCAGTTATAGAACTCGCA
Found at i:45133507 original size:43 final size:42
Alignment explanation
Indices: 45133392--45133520 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 42
45133382 AGCAGCACTG
* * *
45133392 GCACCCTGGTGGCTCGAATGTGCTGGGGAGCCTCGAGCACTATCC
1 GCACCTTGGT-GCTCGGATGTGC--GGGAGCCTCGAGCACCATCC
* * *
45133437 GTA-CTTAGGAGCTCGGATGTGCCGGAG-CTCCGAGCACCATCC
1 GCACCTT-GGTGCTCGGATGTGCGGGAGCCT-CGAGCACCATCC
45133479 GCACCTTGGTGCCTCGGATGTGCGGGAGCCTCGAGCACCATC
1 GCACCTTGGTG-CTCGGATGTGCGGGAGCCTCGAGCACCATC
45133521 GACAACTTTG
Statistics
Matches: 70, Mismatches: 9, Indels: 12
0.77 0.10 0.13
Matches are distributed among these distances:
41 2 0.03
42 20 0.29
43 29 0.41
44 15 0.21
45 4 0.06
ACGTcount: A:0.16, C:0.32, G:0.33, T:0.19
Consensus pattern (42 bp):
GCACCTTGGTGCTCGGATGTGCGGGAGCCTCGAGCACCATCC
Found at i:45134221 original size:85 final size:85
Alignment explanation
Indices: 45134082--45134671 Score: 568
Period size: 85 Copynumber: 6.9 Consensus size: 85
45134072 NNCCGATGCG
* * * * *
45134082 GCTCGAGGCTCCCGCACATCCCAGCATCAAGGTACCGATGCTGGTTG-GTGCTCCCGCACATTCG
1 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAG-GCTCCCGCACATTCG
*
45134146 AGCCACCAAGGTGCCGATTCT
65 AGCCACCAAGGTGCCGATACT
* *** * * * *
45134167 GCTCGAGGCTGCTATACATCCAAGCACTATA-GTGTCGATGCTACTCGAGACTCCCGCACA-TCT
1 GCTCGAGGCTCCCGCACATCCAAGCACCA-AGGTGCCGATGCTGCTCGAGGCTCCCGCACATTC-
* * * *
45134230 GAGCCACTAAGGTGCTGATGCG
64 GAGCCACCAAGGTGCCGATACT
* * * * *
45134252 GCTCGAGGCTCCCCCACATCCCAGCACCAAGGTGCCGATGGTGCACGAGGCTCCCGCACGTTCGA
1 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATTCGA
* *
45134317 GCCACCAAGGTGCCGATGCG
66 GCCACCAAGGTGCCGATACT
* * * *
45134337 GCTTGAGGCTCCCGCACATCCCAGCACCAAGGTGCCGATGGTGCTCGAGGC-CGCCGCACATTTG
1 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTC-CCGCACATTCG
* *
45134401 AGCCGCCAAGGTGCCGATAGT
65 AGCCACCAAGGTGCCGATACT
* * * * * * *
45134422 GCTAGCGGCTCCCGCACATCCAAGTACTAAGGTACCGATGCTGCTCGAGACTCCCACACA-TCTG
1 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATTC-G
** * * *
45134486 AGAAACAAAGTTGCCGATACA
65 AGCCACCAAGGTGCCGATACT
* * *
45134507 G-T-GCATGGCTCCC-CTATATCCCAGCACTAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATT
1 GCTCG-A-GGCTCCCGC-ACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATT
*
45134569 CGAGCCACCAAGGTGCC-AGTTCT
63 CGAGCCACCAAGGTGCCGA-TACT
* * *
45134592 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCAAGGCTCCCGCACATCCGA
1 GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATTCGA
**
45134657 GGAACCAAGGTGCCG
66 GCCACCAAGGTGCCG
45134672 GTGCTGGCCG
Statistics
Matches: 410, Mismatches: 78, Indels: 33
0.79 0.15 0.06
Matches are distributed among these distances:
83 1 0.00
84 8 0.02
85 390 0.95
86 10 0.02
87 1 0.00
ACGTcount: A:0.22, C:0.34, G:0.26, T:0.18
Consensus pattern (85 bp):
GCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATTCGA
GCCACCAAGGTGCCGATACT
Found at i:45134257 original size:43 final size:41
Alignment explanation
Indices: 45134074--45134671 Score: 316
Period size: 42 Copynumber: 14.1 Consensus size: 41
45134064 NNNNNNNNNN
** * *
45134074 CCGATGCGGCTCGAGGCTCCCGCACATCCCAGCATCAAGGTA
1 CCGATG-GGCTCGAGGCTCCCGCACATCTGAGCACCAAGGTG
*
45134116 CCGATGCTGG-TTG-GTGCTCCCGCACAT-TCGAGCCACCAAGGTG
1 CCGATG--GGCTCGAG-GCTCCCGCACATCT-GAG-CACCAAGGTG
** * *** ** *
45134159 CCGATTCTGCTCGAGGCTGCTATACATCCAAGCACTATA-GTG
1 CCGA-TGGGCTCGAGGCTCCCGCACATCTGAGCACCA-AGGTG
* ** * *
45134201 TCGATGCTACTCGAGACTCCCGCACATCTGAGCCACTAAGGTG
1 CCGATG-GGCTCGAGGCTCCCGCACATCTGAG-CACCAAGGTG
* * **
45134244 CTGATGCGGCTCGAGGCTCCCCCACATCCCAGCACCAAGGTG
1 CCGATG-GGCTCGAGGCTCCCGCACATCTGAGCACCAAGGTG
* *
45134286 CCGATGGTGCACGAGGCTCCCGCACGT-TCGAGCCACCAAGGTG
1 CCGATGG-GCTCGAGGCTCCCGCACATCT-GAG-CACCAAGGTG
* **
45134329 CCGATGCGGCTTGAGGCTCCCGCACATCCCAGCACCAAGGTG
1 CCGATG-GGCTCGAGGCTCCCGCACATCTGAGCACCAAGGTG
* *
45134371 CCGATGGTGCTCGAGGC-CGCCGCACATTTGAGCCGCCAAGGTG
1 CCGATGG-GCTCGAGGCTC-CCGCACATCTGAG-CACCAAGGTG
* * * ** * * *
45134414 CCGATAGTGCTAGCGGCTCCCGCACATCCAAGTACTAAGGTA
1 CCGAT-GGGCTCGAGGCTCCCGCACATCTGAGCACCAAGGTG
* * * * * *
45134456 CCGATGCTGCTCGAGACTCCCACACATCTGAGAAACAAAGTTG
1 CCGATG-GGCTCGAGGCTCCCGCACATCTGAG-CACCAAGGTG
** * ** *
45134499 CCGATACAG-T-GCATGGCTCCC-CTATATCCCAGCACTAAGGTG
1 CCGAT-GGGCTCG-A-GGCTCCCGC-ACATCTGAGCACCAAGGTG
*
45134541 CCGATGCTGCTCGAGGCTCCCGCACAT-TCGAGCCACCAAGGTG
1 CCGATG-GGCTCGAGGCTCCCGCACATCT-GAG-CACCAAGGTG
* ** **
45134584 CCAGTTCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTG
1 CC-GATGGGCTCGAGGCTCCCGCACATCTGAGCACCAAGGTG
* * *
45134626 CCGATGGTGCTCAAGGCTCCCGCACATCCGAGGAACCAAGGTG
1 CCGATGG-GCTCGAGGCTCCCGCACATCTGA-GCACCAAGGTG
45134669 CCG
1 CCG
45134672 GTGCTGGCCG
Statistics
Matches: 422, Mismatches: 96, Indels: 75
0.71 0.16 0.13
Matches are distributed among these distances:
41 9 0.02
42 208 0.49
43 197 0.47
44 8 0.02
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (41 bp):
CCGATGGGCTCGAGGCTCCCGCACATCTGAGCACCAAGGTG
Found at i:45134530 original size:255 final size:255
Alignment explanation
Indices: 45134074--45134671 Score: 733
Period size: 255 Copynumber: 2.3 Consensus size: 255
45134064 NNNNNNNNNN
* * * * *
45134074 CCGATGCGGCTCGAGGCTCCCGCACATCCCAGCATCAAGGTACCGATGCTGGTTG-GTGCTCCCG
1 CCGATGCGGCTCGAGGCTCCCGCACATCCCAGCACCAAGGTGCCGATGGTGCTCGAG-GCTCCCG
* * * * *
45134138 CACATTCGAGCCACCAAGGTGCCGATTCTGCTCGAGGCTGCTATACATCCAAGCACTATAGTGTC
65 CACATTCGAGCCACCAAGGTGCCGATACTGCTAGAGGCTCCCACACATCCAAGCACTATAGTGTC
* ** * * * *
45134203 GATGCTACTCGAGACTCCCGCACATCTGAGCCACTAAGGTGCTGATGCGGCTCGAGGCTCCCCCA
130 GATGCTACTCGAGACTCCCACACATCTGAGAAACAAAGGTGCCGATACAGCTCGAGGCTCCCCCA
* *
45134268 CATCCCAGCACCAAGGTGCCGATGGTGCACGAGGCTCCCGCACGTTCGAGCCACCAAGGTG
195 CATCCCAGCACCAAGGTGCCGATGCTGCACGAGGCTCCCGCACATTCGAGCCACCAAGGTG
*
45134329 CCGATGCGGCTTGAGGCTCCCGCACATCCCAGCACCAAGGTGCCGATGGTGCTCGAGGC-CGCCG
1 CCGATGCGGCTCGAGGCTCCCGCACATCCCAGCACCAAGGTGCCGATGGTGCTCGAGGCTC-CCG
* * * * * *
45134393 CACATTTGAGCCGCCAAGGTGCCGATAGTGCTAGCGGCTCCCGCACATCCAAGTACTA-AG-GTA
65 CACATTCGAGCCACCAAGGTGCCGATACTGCTAGAGGCTCCCACACATCCAAGCACTATAGTGT-
* *
45134456 CCGATGCTGCTCGAGACTCCCACACATCTGAGAAACAAAGTTGCCGATACAG-T-GCATGGCTCC
129 -CGATGCTACTCGAGACTCCCACACATCTGAGAAACAAAGGTGCCGATACAGCTCG-A-GGCTCC
* * * *
45134519 CCTATATCCCAGCACTAAGGTGCCGATGCTGCTCGAGGCTCCCGCACATTCGAGCCACCAAGGTG
191 CCCACATCCCAGCACCAAGGTGCCGATGCTGCACGAGGCTCCCGCACATTCGAGCCACCAAGGTG
* * * *
45134584 CC-AGTTCTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTGCCGATGGTGCTCAAGGCTCCCG
1 CCGA-TGCGGCTCGAGGCTCCCGCACATCCCAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCG
* **
45134648 CACATCCGAGGAACCAAGGTGCCG
65 CACATTCGAGCCACCAAGGTGCCG
45134672 GTGCTGGCCG
Statistics
Matches: 293, Mismatches: 42, Indels: 16
0.83 0.12 0.05
Matches are distributed among these distances:
253 3 0.01
254 6 0.02
255 282 0.96
256 2 0.01
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (255 bp):
CCGATGCGGCTCGAGGCTCCCGCACATCCCAGCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGC
ACATTCGAGCCACCAAGGTGCCGATACTGCTAGAGGCTCCCACACATCCAAGCACTATAGTGTCG
ATGCTACTCGAGACTCCCACACATCTGAGAAACAAAGGTGCCGATACAGCTCGAGGCTCCCCCAC
ATCCCAGCACCAAGGTGCCGATGCTGCACGAGGCTCCCGCACATTCGAGCCACCAAGGTG
Found at i:45146684 original size:22 final size:23
Alignment explanation
Indices: 45146647--45146691 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
45146637 AGATATGATA
45146647 TGTAATCTTAGAAGATATAATTT
1 TGTAATCTTAGAAGATATAATTT
*
45146670 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
45146692 GTAGATACCT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 10 0.48
23 11 0.52
ACGTcount: A:0.36, C:0.04, G:0.13, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:45148927 original size:29 final size:30
Alignment explanation
Indices: 45148890--45148946 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
45148880 TCCGAGCCTT
45148890 GGGGAAAAAT-ATAATTATGTAAAAGTTTA
1 GGGGAAAAATCATAATTATGTAAAAGTTTA
* * *
45148919 GGGGCAAAATCATAATTTTGTCAAAGTT
1 GGGGAAAAATCATAATTATGTAAAAGTT
45148947 AGAGTCGAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.42, C:0.05, G:0.21, T:0.32
Consensus pattern (30 bp):
GGGGAAAAATCATAATTATGTAAAAGTTTA
Found at i:45149360 original size:50 final size:50
Alignment explanation
Indices: 45149283--45149526 Score: 355
Period size: 50 Copynumber: 4.9 Consensus size: 50
45149273 CATTTGGGTA
* *
45149283 GAGAGGTCCCATGTAAGACCATTTCTGGGACATGGCATTGGCACTGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
45149333 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
**
45149383 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGAT
1 GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * *
45149433 GAGAGGTCCC-TCGTAAGACCATGTCTGGGACATGACATGGGCACCGATAT
1 GAGAGGTCCCAT-GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
** * *
45149483 GAGAACATCCCATGTAAGAACATGTCTGGGACATGGCTTTGGCA
1 GAG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
45149527 TGTTATTAAC
Statistics
Matches: 176, Mismatches: 15, Indels: 5
0.90 0.08 0.03
Matches are distributed among these distances:
49 1 0.01
50 142 0.81
51 32 0.18
52 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (50 bp):
GAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:45156933 original size:50 final size:51
Alignment explanation
Indices: 45156870--45157001 Score: 185
Period size: 50 Copynumber: 2.6 Consensus size: 51
45156860 GAGGTCCTAT
* ** *
45156870 GTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGA-GGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGACCATCCCAC
* * *
45156920 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGACCATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGACCATCCCAC
*
45156971 GTAAGACCATGTCTGGGACATGGCTTTGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
45157002 TGTTATTATC
Statistics
Matches: 72, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
50 39 0.54
51 33 0.46
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.20
Consensus pattern (51 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGACCATCCCAC
Found at i:45157214 original size:36 final size:36
Alignment explanation
Indices: 45157167--45157239 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
45157157 TCAATGTTTC
*
45157167 AGCAAGAGAAGAATAAGTTACGATCGTGAGTTAACT
1 AGCAAGAGAAGAATAAGTTACGATCATGAGTTAACT
45157203 AGCAAGAGAAGAATAAGTTACGATCATGAGTTAACT
1 AGCAAGAGAAGAATAAGTTACGATCATGAGTTAACT
45157239 A
1 A
45157240 AGTAAACCAG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.44, C:0.11, G:0.23, T:0.22
Consensus pattern (36 bp):
AGCAAGAGAAGAATAAGTTACGATCATGAGTTAACT
Found at i:45159616 original size:710 final size:710
Alignment explanation
Indices: 45158257--45160385 Score: 4159
Period size: 710 Copynumber: 3.0 Consensus size: 710
45158247 TTAATTTCAA
*
45158257 AAGTAAAATTTTATGCCCCGAATTTTTAAGTTAAGTAAAGTAATACCTCGAGCTCGACTCCGGCA
1 AAGTAAAATTTTATGCCCCGAATTTTTAAGTTAAGTAAAGTAATGCCTCGAGCTCGACTCCGGCA
45158322 ATGGTCTCGGGTAAGGGGTGTTACAGCTCCCCGGACTATCCGTAATTTTTTTTATATTCGCCTAC
66 ATGGTCTCGGGTAAGGGGTGTTACAGCTCCCCGGACTATCCGTAATTTTTTTTATATTCGCCTAC
45158387 AAGTTACCAATCTGGTAGCGCATTTGTTTTAACTTCTTATATTGCCACCCTCCAAGCTCTTTACC
131 AAGTTACCAATCTGGTAGCGCATTTGTTTTAACTTCTTATATTGCCACCCTCCAAGCTCTTTACC
45158452 TACCTTCTTAATTTTTTCCAAAGTGTCCTAAGTACCTCTCTGCCAAGCTTCATTTATGATCTTTT
196 TACCTTCTTAATTTTTTCCAAAGTGTCCTAAGTACCTCTCTGCCAAGCTTCATTTATGATCTTTT
45158517 TTGCTTCTTCATTTTTTGCCCAGCAGACCTCATATTTAAAACAAAGTCTAGGATCCCTAAGGTTA
261 TTGCTTCTTCATTTTTTGCCCAGCAGACCTCATATTTAAAACAAAGTCTAGGATCCCTAAGGTTA
45158582 TCTCTTGGCCTTCTCCCTTGAGTATCTAAAATGATCGCATCATGATCAGAGCTAGATTGACGGAG
326 TCTCTTGGCCTTCTCCCTTGAGTATCTAAAATGATCGCATCATGATCAGAGCTAGATTGACGGAG
45158647 CACCTTGGTTTTCAGAAAGGGGAAGTTATTCACATCATTAGTGGAAATAAAGAAGCGGTCGAGTC
391 CACCTTGGTTTTCAGAAAGGGGAAGTTATTCACATCATTAGTGGAAATAAAGAAGCGGTCGAGTC
*
45158712 TTTCTTTAAACATCGTTGTACCCTCATTGTTATTCACCCAGGTAAACCACTCATTGTCTGTCTTC
456 TTTCTTTAACCATCGTTGTACCCTCATTGTTATTCACCCAGGTAAACCACTCATTGTCTGTCTTC
45158777 AACTCCACCATTGAGAGCTCATCGACGATCTCACAGAAATCCTCCATAAGGGCATTTGGTTTTCT
521 AACTCCACCATTGAGAGCTCATCGACGATCTCACAGAAATCCTCCATAAGGGCATTTGGTTTTCT
45158842 CCTCCCACCTTCTTCGAGGCTCCCGCACATCCAAGCACCAAGGTTTCTGATGGTGTCCGAGGCTC
586 CCTCCCACCTTCTTCGAGGCTCCCGCACATCCAAGCACCAAGGTTTCTGATGGTGTCCGAGGCTC
45158907 CTGCAAATATGAGCTATAAAGGTACCGATGTTGCTCGAGGCTATCTGAGCCACCAAGGTT
651 CTGCAAATATGAGCTATAAAGGTACCGATGTTGCTCGAGGCTATCTGAGCCACCAAGGTT
*
45158967 AAGTAAAATTTTATACCCCGAATTTTTAAGTTAAGTAAAGTAATGCCTCGAGCTCGACTCCGGCA
1 AAGTAAAATTTTATGCCCCGAATTTTTAAGTTAAGTAAAGTAATGCCTCGAGCTCGACTCCGGCA
45159032 ATGGTCTCGGGTAAGGGGTGTTACAGCTCCCCGGACTATCCGTAATTTTTTTTATATTCGCCTAC
66 ATGGTCTCGGGTAAGGGGTGTTACAGCTCCCCGGACTATCCGTAATTTTTTTTATATTCGCCTAC
45159097 AAGTTACCAATCTGGTAGCGCATTTGTTTTAACTTCTTATATTGCCACCCTCCAAGCTCTTTACC
131 AAGTTACCAATCTGGTAGCGCATTTGTTTTAACTTCTTATATTGCCACCCTCCAAGCTCTTTACC
45159162 TACCTTCTTAATTTTTTCCAAAGTGTCCTAAGTACCTCTCTGCCAAGCTTCATTTATGATCTTTT
196 TACCTTCTTAATTTTTTCCAAAGTGTCCTAAGTACCTCTCTGCCAAGCTTCATTTATGATCTTTT
45159227 TTGCTTCTTCATTTTTTGCCCAGCAGACCTCATATTTAAAACAAAGTCTAGGATCCCTAAGGTTA
261 TTGCTTCTTCATTTTTTGCCCAGCAGACCTCATATTTAAAACAAAGTCTAGGATCCCTAAGGTTA
45159292 TCTCTTGGCCTTCTCCCTTGAGTATCTAAAATGATCGCATCATGATCAGAGCTAGATTGACGGAG
326 TCTCTTGGCCTTCTCCCTTGAGTATCTAAAATGATCGCATCATGATCAGAGCTAGATTGACGGAG
45159357 CACCTTGGTTTTCAGAAAGGGGAAGTTATTCACATCATTAGTGGAAATAAAGAAGCGGTCGAGTC
391 CACCTTGGTTTTCAGAAAGGGGAAGTTATTCACATCATTAGTGGAAATAAAGAAGCGGTCGAGTC
45159422 TTTCTTTAACCATCGTTGTACCCTCATTGTTATTCACCCAGGTAAACCACTCATTGTCTGTCTTC
456 TTTCTTTAACCATCGTTGTACCCTCATTGTTATTCACCCAGGTAAACCACTCATTGTCTGTCTTC
45159487 AACTCCACCATTGAGAGCTCATCGACGATCTCACAGAAATCCTCCATAAGGGCATTTGGTTTTCT
521 AACTCCACCATTGAGAGCTCATCGACGATCTCACAGAAATCCTCCATAAGGGCATTTGGTTTTCT
45159552 CCTCCCACCTTCTTCGAGGCTCCCGCACATCCAAGCACCAAGGTTTCTGATGGTGTCCGAGGCTC
586 CCTCCCACCTTCTTCGAGGCTCCCGCACATCCAAGCACCAAGGTTTCTGATGGTGTCCGAGGCTC
45159617 CTGCAAATATGAGCTATAAAGGTACCGATGTTGCTCGAGGCTATCTGAGCCACCAAGGTT
651 CTGCAAATATGAGCTATAAAGGTACCGATGTTGCTCGAGGCTATCTGAGCCACCAAGGTT
45159677 AAGTAAAATTTTATGCCCCGAATTTTTAAGTTAAGTAAAGTAATGCCTCGAGCTCGACTCCGGCA
1 AAGTAAAATTTTATGCCCCGAATTTTTAAGTTAAGTAAAGTAATGCCTCGAGCTCGACTCCGGCA
45159742 ATGGTCTCGGGTAAGGGGTGTTACAGCTCCCCGGACTATCCGTAATTTTTTTTATATTCGCCTAC
66 ATGGTCTCGGGTAAGGGGTGTTACAGCTCCCCGGACTATCCGTAATTTTTTTTATATTCGCCTAC
*
45159807 AAGTTACCAATCTGGTAGTGCATTTGTTTTAACTTCTTATATTGCCACCCTCCAAGCTCTTTACC
131 AAGTTACCAATCTGGTAGCGCATTTGTTTTAACTTCTTATATTGCCACCCTCCAAGCTCTTTACC
45159872 TACCTTCTTAATTTTTTCCAAAGTGTCCTAAGTACCTCTCTGCCAAGCTTCATTTATGATCTTTT
196 TACCTTCTTAATTTTTTCCAAAGTGTCCTAAGTACCTCTCTGCCAAGCTTCATTTATGATCTTTT
* * *
45159937 TTGCTTCTTCATTTTTTGCGCAGTAGACCTCATATTTAAAACAAAGTCTAGGATCCCTAAGGTTG
261 TTGCTTCTTCATTTTTTGCCCAGCAGACCTCATATTTAAAACAAAGTCTAGGATCCCTAAGGTTA
45160002 TCTCTTGGCCTTCTCCCTTGAGTATCTAAAATGATCGCATCATGATCAGAGCTAGATTGACGGAG
326 TCTCTTGGCCTTCTCCCTTGAGTATCTAAAATGATCGCATCATGATCAGAGCTAGATTGACGGAG
*
45160067 CACCTTGGTTTTCAGAAAGGGGAAGTTATTCACATTATTAGTGGAAATAAAGAAGCGGTCGAGTC
391 CACCTTGGTTTTCAGAAAGGGGAAGTTATTCACATCATTAGTGGAAATAAAGAAGCGGTCGAGTC
45160132 TTTCTTTAACCATCGTTGTACCCTCATTGTTATTCACCCAGGTAAACCACTCATTGTCTGTCTTC
456 TTTCTTTAACCATCGTTGTACCCTCATTGTTATTCACCCAGGTAAACCACTCATTGTCTGTCTTC
* * *
45160197 AACTCCACCATCGAGAGCTCGTCGATGATCTCACAGAAATCCTCCATAAGGGCATTTGGTTTTCT
521 AACTCCACCATTGAGAGCTCATCGACGATCTCACAGAAATCCTCCATAAGGGCATTTGGTTTTCT
45160262 CCTCCCACCTTCTTCGAGGCTCCCGCACATCCAAGCACCAAGGTTTCTGATGGTGTCCGAGGCTC
586 CCTCCCACCTTCTTCGAGGCTCCCGCACATCCAAGCACCAAGGTTTCTGATGGTGTCCGAGGCTC
45160327 CTGCAAATATGAGCTATAAAGGTACCGATGTTGCTCGAGGCTATCTGAGCCACCAAGGT
651 CTGCAAATATGAGCTATAAAGGTACCGATGTTGCTCGAGGCTATCTGAGCCACCAAGGT
45160386 GCCGATGGTG
Statistics
Matches: 1407, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
710 1407 1.00
ACGTcount: A:0.25, C:0.25, G:0.18, T:0.32
Consensus pattern (710 bp):
AAGTAAAATTTTATGCCCCGAATTTTTAAGTTAAGTAAAGTAATGCCTCGAGCTCGACTCCGGCA
ATGGTCTCGGGTAAGGGGTGTTACAGCTCCCCGGACTATCCGTAATTTTTTTTATATTCGCCTAC
AAGTTACCAATCTGGTAGCGCATTTGTTTTAACTTCTTATATTGCCACCCTCCAAGCTCTTTACC
TACCTTCTTAATTTTTTCCAAAGTGTCCTAAGTACCTCTCTGCCAAGCTTCATTTATGATCTTTT
TTGCTTCTTCATTTTTTGCCCAGCAGACCTCATATTTAAAACAAAGTCTAGGATCCCTAAGGTTA
TCTCTTGGCCTTCTCCCTTGAGTATCTAAAATGATCGCATCATGATCAGAGCTAGATTGACGGAG
CACCTTGGTTTTCAGAAAGGGGAAGTTATTCACATCATTAGTGGAAATAAAGAAGCGGTCGAGTC
TTTCTTTAACCATCGTTGTACCCTCATTGTTATTCACCCAGGTAAACCACTCATTGTCTGTCTTC
AACTCCACCATTGAGAGCTCATCGACGATCTCACAGAAATCCTCCATAAGGGCATTTGGTTTTCT
CCTCCCACCTTCTTCGAGGCTCCCGCACATCCAAGCACCAAGGTTTCTGATGGTGTCCGAGGCTC
CTGCAAATATGAGCTATAAAGGTACCGATGTTGCTCGAGGCTATCTGAGCCACCAAGGTT
Found at i:45160536 original size:127 final size:127
Alignment explanation
Indices: 45160373--45160681 Score: 413
Period size: 127 Copynumber: 2.4 Consensus size: 127
45160363 GAGGCTATCT
* * **
45160373 GAGCCACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAGCGCCAAGGTTGCTGACGGT
1 GAGCCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTTGCCAACGGT
* *
45160438 ATCTAAAGCTCCCGTACATCAAAGCACCAAGGTGCCGATGCT-CTCGAGACTCCAGCACATCC
66 ATCTAAAGCTCACGCACATCAAAGCACCAAGGTGCCGATGCTGCTCGAGACTCC-GCACATCC
* *
45160500 GAGCCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAAGTTGCCAATGGT
1 GAGCCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTTGCCAACGGT
* * * * * * *
45160565 GTCTAAGGCTCACGCACATCCAAGCACCAAGGTGCCGGTGCTGCTCGAGGCTCCTCACATCT
66 ATCTAAAGCTCACGCACATCAAAGCACCAAGGTGCCGATGCTGCTCGAGACTCCGCACATCC
* * * * **
45160627 GAGCTACCAAGGTGTCGATGTTGCTTGAAGAACCCGCACATCCAAGCACCAAGGT
1 GAGCCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGT
45160682 GCCGATTTTG
Statistics
Matches: 159, Mismatches: 22, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
127 149 0.94
128 10 0.06
ACGTcount: A:0.25, C:0.32, G:0.26, T:0.17
Consensus pattern (127 bp):
GAGCCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACATCCAAGCACCAAGGTTGCCAACGGT
ATCTAAAGCTCACGCACATCAAAGCACCAAGGTGCCGATGCTGCTCGAGACTCCGCACATCC
Found at i:45160541 original size:43 final size:42
Alignment explanation
Indices: 45160377--45160709 Score: 314
Period size: 42 Copynumber: 7.9 Consensus size: 42
45160367 CTATCTGAGC
45160377 CACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
1 CACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
* * * * * * * *
45160419 CGCCAAGGTTGCTGACGGT-ATCTAAAGCTCCCGTACATCAAAG
1 CACCAAGG-TGCCGATGGTGCTC-GAGGCTCCCGCACATCCAAG
* * * *
45160462 CACCAAGGTGCCGATGCT-CTCGAGACTCCAGCACATCCGAG
1 CACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
*
45160503 CCACCAAGGTGTCGATGGTGCTCGAGGCTCCCGCACATCCAAG
1 -CACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
* * * *
45160546 CACCAAAGTTGCCAATGGTG-TCTAAGGCTCACGCACATCCAAG
1 CACC-AAGGTGCCGATGGTGCTC-GAGGCTCCCGCACATCCAAG
* * * **
45160589 CACCAAGGTGCCGGTGCTGCTCGAGGCT-CCTCACATCTGAG
1 CACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
* * * * **
45160630 CTACCAAGGTGTCGATGTTGCTTGAAGAACCCGCACATCCAAG
1 C-ACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
**
45160673 CACCAAGGTGCCGATTTTGCTCGAGGCTCCCGCACAT
1 CACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACAT
45160710 TCGAGCCATC
Statistics
Matches: 227, Mismatches: 55, Indels: 18
0.76 0.18 0.06
Matches are distributed among these distances:
41 23 0.10
42 106 0.47
43 98 0.43
ACGTcount: A:0.24, C:0.33, G:0.25, T:0.18
Consensus pattern (42 bp):
CACCAAGGTGCCGATGGTGCTCGAGGCTCCCGCACATCCAAG
Found at i:45161580 original size:50 final size:50
Alignment explanation
Indices: 45161476--45161645 Score: 196
Period size: 50 Copynumber: 3.3 Consensus size: 50
45161466 TAAAGAGATA
*
45161476 CCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAAACTATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CG--A-TATGAGAGGTC
* *
45161532 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGGTC
*** * * **
45161582 CCCCATAAGACCATGTCTGGGACATAGCATGGGCACCGATATGAGAACTC
1 CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGGTC
45161632 CCATGTAAGACCAT
1 CCATGTAAGACCAT
45161646 ATTTGAGATA
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
50 62 0.63
51 1 0.01
53 1 0.01
55 1 0.01
56 34 0.34
ACGTcount: A:0.28, C:0.24, G:0.27, T:0.21
Consensus pattern (50 bp):
CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAGGTC
Found at i:45161691 original size:49 final size:49
Alignment explanation
Indices: 45161634--45161798 Score: 147
Period size: 49 Copynumber: 3.3 Consensus size: 49
45161624 GAGAACTCCC
* * *
45161634 ATGTAAGACCATATTTGAGATATGACATTTGTAGTACAAAAAACATCCT
1 ATGTAAGACCATATCTGAGATATGACATTGGAAGTACAAAAAACATCCT
* * * * * * * *
45161683 ATGTAAGACCATGTCT-AGGACATGGCATGGGCACCG-ACATGAGAAC-TCCC
1 ATGTAAGACCATATCTGA-GATATGACATTGG-A-AGTACA-AAAAACATCCT
* *
45161733 ATGTGAGACCATATCTGAGATATGACATTGGAAGTACAATAAACATCCT
1 ATGTAAGACCATATCTGAGATATGACATTGGAAGTACAAAAAACATCCT
*
45161782 ATGTAAGACCATGTCTG
1 ATGTAAGACCATATCTG
45161799 GGACATGGCT
Statistics
Matches: 86, Mismatches: 23, Indels: 14
0.70 0.19 0.11
Matches are distributed among these distances:
48 5 0.06
49 45 0.52
50 30 0.35
51 6 0.07
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (49 bp):
ATGTAAGACCATATCTGAGATATGACATTGGAAGTACAAAAAACATCCT
Found at i:45161711 original size:99 final size:99
Alignment explanation
Indices: 45161587--45161807 Score: 370
Period size: 99 Copynumber: 2.2 Consensus size: 99
45161577 AGGTCCCCCA
* * *
45161587 TAAGACCATGTCTGGGACATAGCATGGGCACCGATATGAGAACTCCCATGTAAGACCATATTTGA
1 TAAGACCATGTCTGGGACATGGCATGGGCACCGACATGAGAACTCCCATGTAAGACCATATCTGA
* *
45161652 GATATGACATTTGTAGTACAAAAAACATCCTATG
66 GATATGACATTGGAAGTACAAAAAACATCCTATG
* *
45161686 TAAGACCATGTCTAGGACATGGCATGGGCACCGACATGAGAACTCCCATGTGAGACCATATCTGA
1 TAAGACCATGTCTGGGACATGGCATGGGCACCGACATGAGAACTCCCATGTAAGACCATATCTGA
*
45161751 GATATGACATTGGAAGTACAATAAACATCCTATG
66 GATATGACATTGGAAGTACAAAAAACATCCTATG
45161785 TAAGACCATGTCTGGGACATGGC
1 TAAGACCATGTCTGGGACATGGC
45161808 TTTGGCATGT
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
99 113 1.00
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (99 bp):
TAAGACCATGTCTGGGACATGGCATGGGCACCGACATGAGAACTCCCATGTAAGACCATATCTGA
GATATGACATTGGAAGTACAAAAAACATCCTATG
Found at i:45168818 original size:50 final size:50
Alignment explanation
Indices: 45168697--45168883 Score: 194
Period size: 50 Copynumber: 3.6 Consensus size: 50
45168687 GAGATCTCAT
* * *
45168697 GTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGACTATGGGAGGTCCCAT
1 GTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGGTCCCAA
* * **
45168753 GTAAGACAATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCAA
* * * **
45168803 GTAAGACCATGTCTGGGACATAGCATGGGCACCGATATGAGAACTCCCAA
1 GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCAA
* *
45168853 GTAAGACCATATCTGGGATATGGCATTGGCA
1 GTAAGACCATGTCTGGGACATGGCATTGGCA
45168884 GTATAAGAAA
Statistics
Matches: 112, Mismatches: 19, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
50 79 0.71
53 3 0.03
55 1 0.01
56 29 0.26
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.21
Consensus pattern (50 bp):
GTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCAA
Found at i:45173670 original size:27 final size:27
Alignment explanation
Indices: 45173640--45173724 Score: 79
Period size: 27 Copynumber: 3.2 Consensus size: 27
45173630 TCAAAGACTA
45173640 CCTTTAGAATATTTAACCTCACAGCTG
1 CCTTTAGAATATTTAACCTCACAGCTG
* * * *
45173667 CCTTT---ATACTCTGA-CTCAAAGACTA
1 CCTTTAGAATA-TTTAACCTCACAG-CTG
*
45173692 CCTTTAGAATATTTAACCTCCCAGCTG
1 CCTTTAGAATATTTAACCTCACAGCTG
45173719 CCTTTA
1 CCTTTA
45173725 TACTCTGACT
Statistics
Matches: 43, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
24 9 0.21
25 10 0.23
27 16 0.37
28 8 0.19
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.34
Consensus pattern (27 bp):
CCTTTAGAATATTTAACCTCACAGCTG
Found at i:45173682 original size:52 final size:52
Alignment explanation
Indices: 45173626--45173782 Score: 287
Period size: 52 Copynumber: 3.0 Consensus size: 52
45173616 TAGCGCAGTT
*
45173626 TGACTCAAAGACTACCTTTAGAATATTTAACCTCACAGCTGCCTTTATACTC
1 TGACTCAAAGACTACCTTTAGAATATTTAACCTCCCAGCTGCCTTTATACTC
45173678 TGACTCAAAGACTACCTTTAGAATATTTAACCTCCCAGCTGCCTTTATACTC
1 TGACTCAAAGACTACCTTTAGAATATTTAACCTCCCAGCTGCCTTTATACTC
* *
45173730 TGACTCAAAGAATACCTTTAGAATATTTAACATCCCAGCTGCCTTTATACTC
1 TGACTCAAAGACTACCTTTAGAATATTTAACCTCCCAGCTGCCTTTATACTC
45173782 T
1 T
45173783 CTTTGTAACA
Statistics
Matches: 102, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
52 102 1.00
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.33
Consensus pattern (52 bp):
TGACTCAAAGACTACCTTTAGAATATTTAACCTCCCAGCTGCCTTTATACTC
Found at i:45173697 original size:25 final size:25
Alignment explanation
Indices: 45173667--45173749 Score: 62
Period size: 25 Copynumber: 3.2 Consensus size: 25
45173657 CTCACAGCTG
45173667 CCTTTATACTCTGACTCAAAGACTA
1 CCTTTATACTCTGACTCAAAGACTA
* * ** *
45173692 CCTTTAGAATA-TTTAACCTCCCAG-CTG
1 CCTTT---ATACTCTGA-CTCAAAGACTA
*
45173719 CCTTTATACTCTGACTCAAAGAATA
1 CCTTTATACTCTGACTCAAAGACTA
45173744 CCTTTA
1 CCTTTA
45173750 GAATATTTAA
Statistics
Matches: 41, Mismatches: 11, Indels: 12
0.64 0.17 0.19
Matches are distributed among these distances:
24 8 0.20
25 15 0.37
27 10 0.24
28 8 0.20
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (25 bp):
CCTTTATACTCTGACTCAAAGACTA
Found at i:45175114 original size:50 final size:50
Alignment explanation
Indices: 45174988--45175185 Score: 180
Period size: 50 Copynumber: 3.8 Consensus size: 50
45174978 ATTTGGGTAA
* * * *
45174988 AGAGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATA
1 AGAGGTCCCACGTAAGACCATGTTTGGGACATGGCATTGGCA-C--CGAG---ATG
* * * *
45175044 AGAGGTCTCATGTAATACCATGTTTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCACGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
* * *
45175094 AGAGGTCCCCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATG
1 AGAGGTCCCACGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
** ** * * *
45175144 AGAATTCCCATATAAGACCATATCTGGGATATGGCATTGGCA
1 AGAGGTCCCACGTAAGACCATGTTTGGGACATGGCATTGGCA
45175186 GTACAGAAAA
Statistics
Matches: 120, Mismatches: 22, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
50 78 0.65
53 3 0.03
55 1 0.01
56 38 0.32
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
AGAGGTCCCACGTAAGACCATGTTTGGGACATGGCATTGGCACCGAGATG
Found at i:45175450 original size:12 final size:12
Alignment explanation
Indices: 45175433--45175471 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
45175423 ATGAATTATT
45175433 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
45175445 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
45175457 TAAGTGAGTAAG
1 TAAGTAAGCAAG
45175469 TAA
1 TAA
45175472 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:45178098 original size:18 final size:19
Alignment explanation
Indices: 45178043--45178128 Score: 77
Period size: 19 Copynumber: 4.4 Consensus size: 19
45178033 CGGGGGAGTG
45178043 AAGGAGAGGGAAAGAAGAA-GA
1 AAGGAGA-GGAAA-AA-AAGGA
* *
45178064 AAGAAAAGGAAAAAAAAGGA
1 AAGGAGAGG-AAAAAAAGGA
*
45178084 AAGGAGAGGAAAAAAAGAA
1 AAGGAGAGGAAAAAAAGGA
*
45178103 AAAGA-AGGAAAGAAAAGGA
1 AAGGAGAGGAAA-AAAAGGA
45178122 AAGGAGA
1 AAGGAGA
45178129 AGAAGGAAAA
Statistics
Matches: 53, Mismatches: 8, Indels: 9
0.76 0.11 0.13
Matches are distributed among these distances:
18 6 0.11
19 25 0.47
20 14 0.26
21 8 0.15
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (19 bp):
AAGGAGAGGAAAAAAAGGA
Found at i:45178145 original size:44 final size:44
Alignment explanation
Indices: 45178051--45178198 Score: 141
Period size: 44 Copynumber: 3.5 Consensus size: 44
45178041 TGAAGGAGAG
45178051 GGAAAGAAG-AAGAAAGAA-AAGGAAAAAAAAGGAAA-G-G-AG-A
1 GGAAA-AAGAAAGAAA-AAGAAGGAAAAAAAAGGAAAGGAGAAGAA
*
45178091 GG-AAAA-AAAGAAAAAGAAGGAAAGAAAAGGAAAGGAGAAGAA
1 GGAAAAAGAAAGAAAAAGAAGGAAAAAAAAGGAAAGGAGAAGAA
* * * *
45178133 GGAAAAAGAAAGAAAAATAAGGAAATAAGAGAAAAGGAGAAGAGA
1 GGAAAAAGAAAGAAAAAGAAGGAAAAAAAAGGAAAGGAGAAGA-A
** *
45178178 AAAAAAAGAAAGAAGAAGAAG
1 GGAAAAAGAAAGAAAAAGAAG
45178199 AGGGAATGAA
Statistics
Matches: 90, Mismatches: 9, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
37 2 0.02
38 24 0.27
39 3 0.03
40 3 0.03
41 2 0.02
42 3 0.03
43 4 0.04
44 31 0.34
45 18 0.20
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (44 bp):
GGAAAAAGAAAGAAAAAGAAGGAAAAAAAAGGAAAGGAGAAGAA
Found at i:45178147 original size:10 final size:10
Alignment explanation
Indices: 45178052--45178194 Score: 66
Period size: 10 Copynumber: 14.3 Consensus size: 10
45178042 GAAGGAGAGG
*
45178052 GAAAGAAGAA
1 GAAAGAAAAA
*
45178062 GAAAGAAAAG
1 GAAAGAAAAA
45178072 GAAA-AAAAA
1 GAAAGAAAAA
* *
45178081 GGAAAG-GAGA
1 -GAAAGAAAAA
*
45178091 GGAA-AAAAA
1 GAAAGAAAAA
*
45178100 GAAA-AAGAAG
1 GAAAGAA-AAA
*
45178110 GAAAGAAAAG
1 GAAAGAAAAA
* *
45178120 GAAAGGAGAA
1 GAAAGAAAAA
*
45178130 GAAGGAAAAA
1 GAAAGAAAAA
45178140 GAAAGAAAAA
1 GAAAGAAAAA
* *
45178150 TAAGGAAATAA
1 GAAAGAAA-AA
45178161 G--AGAAAAGGA
1 GAAAGAAAA--A
45178171 GAAGAGAAAAA
1 GAA-AGAAAAA
45178182 -AAAGAAAGAA
1 GAAAGAAA-AA
45178192 GAA
1 GAA
45178195 GAAGAGGGAA
Statistics
Matches: 99, Mismatches: 21, Indels: 25
0.68 0.14 0.17
Matches are distributed among these distances:
8 1 0.01
9 23 0.23
10 62 0.63
11 7 0.07
13 6 0.06
ACGTcount: A:0.70, C:0.00, G:0.29, T:0.01
Consensus pattern (10 bp):
GAAAGAAAAA
Found at i:45179059 original size:157 final size:156
Alignment explanation
Indices: 45178552--45179103 Score: 491
Period size: 157 Copynumber: 3.5 Consensus size: 156
45178542 TATTTAATAA
* ** * **
45178552 ATTTCAAACATAATGCACTGAAAT-ATGCAAAATTATAAAATTAAAAATTACGATA-TTTT-TTA
1 ATTTCAAACAAAATGCACTGAAATAATATAAAATAATAAAATTAAAAA-TAATATATTTTTATTA
** * * *
45178614 AAATAATAAAATATAGATAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTAACTTTC
65 AAATAATAAAAT-GGGAAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAACTTTT
*
45178679 TTAAAAATTCAGAAACAATTAATACAAAT
129 TTAAAAATTCAGATA-AATTAATACAAAT
* * *
45178708 ATTTCAAAGAAAATGCATTGAAATACTATAAAATAATAAAATATAAAAATAATATATTTTTATTA
1 ATTTCAAACAAAATGCACTGAAATAATATAAAATAATAAAAT-TAAAAATAATATATTTTTATTA
* ** * * * * * *
45178773 AAAGTAATAAAAATTGGG-AAAATAATACGAGTAAAGGGCAG-GGATAAGGGTTTTTTTCTTACA
65 AAA-TAAT-AAAA-TGGGAAAAAAAATACGAACAAATGGCAGAAG-TAAGAGTGTATTAC-TA-A
* * *
45178836 CCAAATTAATTTAAAAA-ACACACTAAATTAAT---AA-
124 -C---TT-TTTTAAAAATTCAGA-TAAATTAATACAAAT
** * * *
45178870 ATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAAAAATTATA-ATATTTT-TTA
1 ATTTCAAACAAAATGCACTGAAATAATATAAAATAATAAAATTAAAAATAATATAT-TTTTATTA
* *
45178933 AAATAATAAAATGCGGAAAAAAAATACGAACAAATAGCTGAAGTAAGAGTGTATTACTAACTTTT
65 AAATAATAAAATG-GGAAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAACTTTT
*
45178998 TTAAAAATTTAGATATAATTAATACAAAT
129 TTAAAAATTCAGATA-AATTAATACAAAT
*
45179027 ATTTCAAACAAAATGTACTGAAATAATATAAAATAATAAAA-TACGAAAATAATATATTTTTATT
1 ATTTCAAACAAAATGCACTGAAATAATATAAAATAATAAAATTA--AAAATAATATATTTTTATT
45179091 GAAAATAATAAAA
64 -AAAATAATAAAA
45179104 ATCGAGAAAA
Statistics
Matches: 309, Mismatches: 56, Indels: 58
0.73 0.13 0.14
Matches are distributed among these distances:
152 10 0.03
153 11 0.04
156 26 0.08
157 57 0.18
158 30 0.10
159 42 0.14
160 52 0.17
161 21 0.07
162 37 0.12
163 3 0.01
166 12 0.04
167 8 0.03
ACGTcount: A:0.52, C:0.08, G:0.09, T:0.31
Consensus pattern (156 bp):
ATTTCAAACAAAATGCACTGAAATAATATAAAATAATAAAATTAAAAATAATATATTTTTATTAA
AATAATAAAATGGGAAAAAAAATACGAACAAATGGCAGAAGTAAGAGTGTATTACTAACTTTTTT
AAAAATTCAGATAAATTAATACAAAT
Found at i:45179059 original size:319 final size:315
Alignment explanation
Indices: 45178545--45179317 Score: 1165
Period size: 319 Copynumber: 2.4 Consensus size: 315
45178535 AATTGTATAT
* * *
45178545 TTAATAAATTTCAAACATAATGCACTGAAAT-ATGCAAAATTATAAAATTAAAAATTACGATATT
1 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAAAAATTA-AATATT
*** *
45178609 TTTTAAAATAATAAAATATAGATAAAAAATACGAACAAATGGCCGAAGTAAGAGTGTATTACTAA
65 TTTTAAAATAATAAAATGCGGAAAAAAAATACGAACAAAT-GCCGAAGTAAGAGTGTATTACTAA
* * * *
45178674 CTTTCTTAAAAATTCAGAAACAATTAATACAAATATTTCAAAGAAAATGCATTGAAATACTATAA
129 CTTTTTTAAAAATTCAGAAACAATTAATACAAATATTTCAAACAAAATGCACTGAAATAATATAA
* * *
45178739 AATAATAAAATATAAAAATAATATATTTTTATT-AAAAGTAATAAAAATTGGGAAAATAATACGA
194 AATAATAAAATACAAAAATAATATATTTTTATTGAAAA-TAATAAAAATCGAGAAAATAATACGA
* *
45178803 GTAAAGGGCAGGGATAAGGGTTTTTTTCTTACACCAAATTAATTTAAAAAACACACTAAA
258 GCAAAGGGCAGGGATAAGGG-TTTTTT-TTAAACCAAATTAATTTAAAAAACACACTAAA
45178863 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAAAAATTATAATATT
1 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAAAAATTA-AATATT
*
45178928 TTTTAAAATAATAAAATGCGGAAAAAAAATACGAACAAATAGCTGAAGTAAGAGTGTATTACTAA
65 TTTTAAAATAATAAAATGCGGAAAAAAAATACGAACAAAT-GCCGAAGTAAGAGTGTATTACTAA
* * * *
45178993 CTTTTTTAAAAATTTAGATATAATTAATACAAATATTTCAAACAAAATGTACTGAAATAATATAA
129 CTTTTTTAAAAATTCAGAAACAATTAATACAAATATTTCAAACAAAATGCACTGAAATAATATAA
*
45179058 AATAATAAAATACGAAAATAATATATTTTTATTGAAAATAATAAAAATCGAGAAAATAATACGAG
194 AATAATAAAATACAAAAATAATATATTTTTATTGAAAATAATAAAAATCGAGAAAATAATACGAG
*
45179123 CAAAGGGTAGGGATAAGGGTTTTTTTTAAACCAAATTAATTTAAAAAACACACTAAA
259 CAAAGGGCAGGGATAAGGGTTTTTTTTAAACCAAATTAATTTAAAAAACACACTAAA
* *
45179180 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAGAAATTAAGATACT
1 TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAAAAATTAA-ATATT
* * * *
45179245 TTTTAAAGTAATAAAATGCGGAGAAAAAAATACGAAGAAATGACCGAGGTAACAGTGT-TTGACT
65 TTTTAAAATAATAAAATGCGGA-AAAAAAATACGAACAAATG-CCGAAGTAAGAGTGTATT-ACT
45179309 AACTTTTTT
127 AACTTTTTT
45179318 TTCAACATGC
Statistics
Matches: 417, Mismatches: 32, Indels: 12
0.90 0.07 0.03
Matches are distributed among these distances:
316 1 0.00
317 116 0.28
318 77 0.18
319 219 0.53
320 4 0.01
ACGTcount: A:0.51, C:0.08, G:0.11, T:0.31
Consensus pattern (315 bp):
TTAATAAATTTCAAACATTATGCACTGAAATAATGTAAAATTATAAAATTAAAAATTAAATATTT
TTTAAAATAATAAAATGCGGAAAAAAAATACGAACAAATGCCGAAGTAAGAGTGTATTACTAACT
TTTTTAAAAATTCAGAAACAATTAATACAAATATTTCAAACAAAATGCACTGAAATAATATAAAA
TAATAAAATACAAAAATAATATATTTTTATTGAAAATAATAAAAATCGAGAAAATAATACGAGCA
AAGGGCAGGGATAAGGGTTTTTTTTAAACCAAATTAATTTAAAAAACACACTAAA
Found at i:45179211 original size:160 final size:155
Alignment explanation
Indices: 45178720--45179228 Score: 491
Period size: 160 Copynumber: 3.2 Consensus size: 155
45178710 TTCAAAGAAA
* *
45178720 ATGCATTGAAATACTATAAAATAATAAAATATAAAAATAATATATTTTTATTAAAAGTAATAAAA
1 ATGCACTGAAATAATATAAAATAAT-AAA-ATAAAAATAATATATTTTTATTAAAA-TAATAAAA
* * *
45178785 ATTGGGAAAATAATACGAGTAAAGGGCAGGGATAAGGGTTTTTTTCTTACACCAAATTAATTTAA
63 A-TCGGAAAATAATACGAGCAAAGGGTAGGGATAAGGG-TTTTTT-TTA-ACCAAATTAATTTAA
45178850 AAAACACACTAAATTAATAAATTTCAAACATT
124 AAAACACACTAAATTAATAAATTTCAAACATT
* * *
45178882 ATGCACTGAAATAATGTAAAATTATAAAATTAAAAATTATA-ATATTTT-TTAAAATAAT-AAAA
1 ATGCACTGAAATAATATAAAATAATAAAA-TAAAAATAATATAT-TTTTATTAAAATAATAAAAA
* * * * * * * * *
45178944 TGCGGAAAAAAAATACGAACAAA---TAGCTGAAGTAAGAG--TGTATT-ACTAACTT-TTTTAA
64 T-CGG-AAAATAATACGAGCAAAGGGTAG--GGA-TAAGGGTTTTTTTTAACCAAATTAATTTAA
** * **
45179002 AAATTTAGA-TATAATTAATACAAATATTTCAAACAAA
124 AAA-ACACACTA-AATTAAT---AA-ATTTCAAACATT
*
45179039 ATGTACTGAAATAATATAAAATAATAAAATACGAAAATAATATATTTTTATTGAAAATAATAAAA
1 ATGCACTGAAATAATATAAAATAATAAAATA--AAAATAATATATTTTTATT-AAAATAATAAAA
45179104 ATCGAGAAAATAATACGAGCAAAGGGTAGGGATAAGGGTTTTTTTTAAACCAAATTAATTTAAAA
63 ATCG-GAAAATAATACGAGCAAAGGGTAGGGATAAGGGTTTTTTTT-AACCAAATTAATTTAAAA
45179169 AACACACTAAATTAATAAATTTCAAACATT
126 AACACACTAAATTAATAAATTTCAAACATT
* *
45179199 ATGCACTGAAATAATGTAAAATTATAAAAT
1 ATGCACTGAAATAATATAAAATAATAAAAT
45179229 TAGAAATTAA
Statistics
Matches: 275, Mismatches: 43, Indels: 60
0.73 0.11 0.16
Matches are distributed among these distances:
152 10 0.04
153 15 0.05
155 2 0.01
156 8 0.03
157 37 0.13
158 20 0.07
159 27 0.10
160 76 0.28
161 27 0.10
162 25 0.09
163 3 0.01
164 15 0.05
165 10 0.04
ACGTcount: A:0.51, C:0.07, G:0.10, T:0.31
Consensus pattern (155 bp):
ATGCACTGAAATAATATAAAATAATAAAATAAAAATAATATATTTTTATTAAAATAATAAAAATC
GGAAAATAATACGAGCAAAGGGTAGGGATAAGGGTTTTTTTTAACCAAATTAATTTAAAAAACAC
ACTAAATTAATAAATTTCAAACATT
Found at i:45181448 original size:11 final size:11
Alignment explanation
Indices: 45181432--45181458 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
45181422 TTTATAACAT
45181432 AATTTGGATAC
1 AATTTGGATAC
45181443 AATTTGGATAC
1 AATTTGGATAC
45181454 AATTT
1 AATTT
45181459 AAACATAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.41
Consensus pattern (11 bp):
AATTTGGATAC
Found at i:45183735 original size:18 final size:18
Alignment explanation
Indices: 45183712--45183752 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
45183702 CAATGATCGG
* *
45183712 CACCACCTTCTTTTTCGC
1 CACCACCTTCTTCTTCAC
45183730 CACCACCTTCTTCTTCAC
1 CACCACCTTCTTCTTCAC
45183748 CACCA
1 CACCA
45183753 ACCATATCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.17, C:0.49, G:0.02, T:0.32
Consensus pattern (18 bp):
CACCACCTTCTTCTTCAC
Found at i:45186332 original size:20 final size:20
Alignment explanation
Indices: 45186307--45186351 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
45186297 AATGTGTCTT
45186307 GTCTTAA-TCGAATTAATTGG
1 GTCTTAACT-GAATTAATTGG
* *
45186327 GTCTTAACTTAATTAATTGT
1 GTCTTAACTGAATTAATTGG
45186347 GTCTT
1 GTCTT
45186352 GTTCTATTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 21 0.95
21 1 0.05
ACGTcount: A:0.27, C:0.11, G:0.16, T:0.47
Consensus pattern (20 bp):
GTCTTAACTGAATTAATTGG
Found at i:45193351 original size:26 final size:25
Alignment explanation
Indices: 45193312--45193362 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
45193302 CATTGTCATT
**
45193312 GTTTATTTTTTATTTATATTAATTTC
1 GTTTATTTACTATTTATATT-ATTTC
45193338 GTTTATTTACTATTTATATTATTTC
1 GTTTATTTACTATTTATATTATTTC
45193363 TATACAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.67
Consensus pattern (25 bp):
GTTTATTTACTATTTATATTATTTC
Found at i:45203036 original size:40 final size:40
Alignment explanation
Indices: 45202952--45203175 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
45202942 TTGAATGATG
* * * *
45202952 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
45202992 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
45203032 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45203070 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45203110 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45203151 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45203176 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 13, Indels: 12
0.87 0.07 0.06
Matches are distributed among these distances:
38 25 0.15
39 19 0.12
40 111 0.67
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45203170 original size:80 final size:80
Alignment explanation
Indices: 45202952--45203175 Score: 296
Period size: 78 Copynumber: 2.8 Consensus size: 80
45202942 TTGAATGATG
* * * * *
45202952 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
45203015 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
45203032 TCCGGGCTAAG-CCCGAAGGCA-TTGTGCGAGTTACTA-AATCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
45203094 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
45203110 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
45203175 G
66 G
45203176 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
77 2 0.02
78 49 0.39
79 25 0.20
80 49 0.39
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:45211078 original size:40 final size:40
Alignment explanation
Indices: 45210994--45211218 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
45210984 TTGAATGATG
* * * *
45210994 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
45211034 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45211074 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45211113 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
45211153 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
45211194 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
45211219 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 34 0.21
40 121 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:45211240 original size:119 final size:119
Alignment explanation
Indices: 45210994--45211251 Score: 283
Period size: 119 Copynumber: 2.2 Consensus size: 119
45210984 TTGAATGATG
* *
45210994 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
45211059 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
* * * **
45211113 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * * *
45211176 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTGA-CTAAA
* *
45211233 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
45211252 TACGTGATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
118 3 0.03
119 83 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.25
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTGACTAAA
Found at i:45217154 original size:50 final size:50
Alignment explanation
Indices: 45217088--45217267 Score: 159
Period size: 50 Copynumber: 3.6 Consensus size: 50
45217078 GGCATTACAA
* * * *
45217088 TGGAGCAGATTAAAGCTGCAACGGCGAATCTTACTCCCCTGGCAGTGTAG
1 TGGAACAGATTGAAGCTGCAACGGTGAATCTTACTCCCCTAGCAGTGTAG
* * * ** * * * *
45217138 TGGAACATATTGAAGCTACGACGGTGAATCTTGTTTCCCC-AACATTGCAA
1 TGGAACAGATTGAAGCTGCAACGGTGAATCTT-ACTCCCCTAGCAGTGTAG
* * * *
45217188 T-TAAAAGATTGAAGCTGCAACGGTGAATCTTACTTCCCTAGCGGTGTAG
1 TGGAACAGATTGAAGCTGCAACGGTGAATCTTACTCCCCTAGCAGTGTAG
* *
45217237 TGGAACAGATTGAAGCTACGACGGTG-ATCTT
1 TGGAACAGATTGAAGCTGCAACGGTGAATCTT
45217268 GTTTCCCCAA
Statistics
Matches: 97, Mismatches: 30, Indels: 7
0.72 0.22 0.05
Matches are distributed among these distances:
48 4 0.04
49 36 0.37
50 52 0.54
51 5 0.05
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (50 bp):
TGGAACAGATTGAAGCTGCAACGGTGAATCTTACTCCCCTAGCAGTGTAG
Found at i:45217176 original size:267 final size:266
Alignment explanation
Indices: 45216661--45217257 Score: 867
Period size: 267 Copynumber: 2.2 Consensus size: 266
45216651 GCAATGGAAG
* * * * *
45216661 AGATTGAAGCCACAACGGCGAATCTTATTTCCCCGGCA-TATAGTGGAGCAGACTGAAGCCACGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAGTGTAGTGGAGCAGATTGAAGCCACGA
* * * * *
45216725 CGGCGAATCTTATCTCCCTGGCGTTAAGGCTTGGATTAGCTGAAGTGGAGCGGATTGAAGCTATG
66 AGGCGAATCTTATCTCCCTGGCATTAAGGCTTGGATTAGCTGAAGTAGAGCGAATTGAAGCTATA
* * * *
45216790 GGCAGTGAATCCTATCTCTTTGGCATTACAGTGGAGTAGATTAAAGTCGCAATGGCGAATCTTAC
131 GGCAGCGAATCCTATCTCTTTGGCATTACAATGGAGCAGATTAAAGTCGCAACGGCGAATCTTAC
*
45216855 TCCCCTGGCGGTGTAGTGGAACAGATTAAAGCTACAACAGCGAATCTCGTTTCCCCAACAATT-C
196 TCCCCTGGCAGTGTAGTGGAACAGATTAAAGCTACAACAGCGAATCTCGTTTCCCCAAC-ATTGC
45216919 AATTTAAA
260 AA-TTAAA
* * *
45216927 AGATTGAAGCCGCAACGACGAATCCTACTTCCCTGGCAGTGTAGTGGAGCAGATTGAAGCCATGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAGTGTAGTGGAGCAGATTGAAGCCACGA
*
45216992 AGGCGAATCTTATCTCCCTGGCATTAAGGCTTGGATTAGCTGAAGTAGAGCGAATTGAAGCTGTA
66 AGGCGAATCTTATCTCCCTGGCATTAAGGCTTGGATTAGCTGAAGTAGAGCGAATTGAAGCTATA
45217057 GGCAGCGAATCCTATCTCTTTGGCATTACAATGGAGCAGATTAAAG-CTGCAACGGCGAATCTTA
131 GGCAGCGAATCCTATCTCTTTGGCATTACAATGGAGCAGATTAAAGTC-GCAACGGCGAATCTTA
* * * * * *
45217121 CTCCCCTGGCAGTGTAGTGGAACATATTGAAGCTACGACGGTGAATCTTGTTTCCCCAACATTGC
195 CTCCCCTGGCAGTGTAGTGGAACAGATTAAAGCTACAACAGCGAATCTCGTTTCCCCAACATTGC
45217186 AATTAAA
260 AATTAAA
* * * * * *
45217193 AGATTGAAGCTGCAACGGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAGTGTAGTGGAGCAGATTGAAGCCACGA
45217258 CGGTGATCTT
Statistics
Matches: 294, Mismatches: 34, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
266 98 0.33
267 196 0.67
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.25
Consensus pattern (266 bp):
AGATTGAAGCCGCAACGGCGAATCTTACTTCCCTGGCAGTGTAGTGGAGCAGATTGAAGCCACGA
AGGCGAATCTTATCTCCCTGGCATTAAGGCTTGGATTAGCTGAAGTAGAGCGAATTGAAGCTATA
GGCAGCGAATCCTATCTCTTTGGCATTACAATGGAGCAGATTAAAGTCGCAACGGCGAATCTTAC
TCCCCTGGCAGTGTAGTGGAACAGATTAAAGCTACAACAGCGAATCTCGTTTCCCCAACATTGCA
ATTAAA
Found at i:45217211 original size:49 final size:49
Alignment explanation
Indices: 45217146--45217300 Score: 168
Period size: 49 Copynumber: 3.1 Consensus size: 49
45217136 AGTGGAACAT
*
45217146 ATTGAAGCTACGACGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAG
1 ATTGAAGCTACAACGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAG
* ** * * ** * * * *
45217195 ATTGAAGCTGCAACGGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAG
1 ATTGAAGCTACAACGGTGAATCTTGTTTCCCCAACATTGCAAT-TAAAAG
*
45217245 ATTGAAGCTACGACGGTG-ATCTTGTTTCCCCAACATTGCAATTAAAAAG
1 ATTGAAGCTACAACGGTGAATCTTGTTTCCCCAACATTGCAATT-AAAAG
45217294 ATTGAAG
1 ATTGAAG
45217301 TCGCAACGGC
Statistics
Matches: 80, Mismatches: 24, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
49 60 0.75
50 20 0.25
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (49 bp):
ATTGAAGCTACAACGGTGAATCTTGTTTCCCCAACATTGCAATTAAAAG
Found at i:45217218 original size:99 final size:99
Alignment explanation
Indices: 45217094--45217399 Score: 420
Period size: 99 Copynumber: 3.1 Consensus size: 99
45217084 ACAATGGAGC
* * * *
45217094 AGATTAAAGCTGCAACGGCGAATCTTACTCCCCTGGCAGTGTAGTGGAACATATTGAAGCTACGA
1 AGATTGAAGCTGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
45217159 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAA
66 CGGTGAATCTTGTTTCCCCAACATTGCAATTAAA
* *
45217193 AGATTGAAGCTGCAACGGTGAATCTTACTTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTACGA
1 AGATTGAAGCTGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
45217258 CGGTG-ATCTTGTTTCCCCAACATTGCAATTAAAA
66 CGGTGAATCTTGTTTCCCCAACATTGCAATT-AAA
* * * *
45217292 AGATTGAAG-TCGCAACGGCAAATCTTACTTCCTTGGTGGTATAGTGGAACAGATTGAAGCTACG
1 AGATTGAAGCT-GCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACG
* ** * * *
45217356 ATGGCAAATCTT-ATTCCCCGACATTCCAATTAAA
65 ACGGTGAATCTTGTTTCCCCAACATTGCAATTAAA
45217390 CAGATTGAAG
1 -AGATTGAAG
45217400 ATATCAGGTC
Statistics
Matches: 185, Mismatches: 18, Indels: 8
0.88 0.09 0.04
Matches are distributed among these distances:
98 29 0.16
99 151 0.82
100 5 0.03
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.27
Consensus pattern (99 bp):
AGATTGAAGCTGCAACGGCGAATCTTACTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTACGA
CGGTGAATCTTGTTTCCCCAACATTGCAATTAAA
Found at i:45217513 original size:45 final size:44
Alignment explanation
Indices: 45217452--45217606 Score: 147
Period size: 44 Copynumber: 3.5 Consensus size: 44
45217442 AATAAACAAG
* * * * *
45217452 TCTTATCCCCCAGAAGTTGTAGTGGGGCAGATTGAAGATGGC-A-AA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-A-GCCAATAA
*
45217497 TCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAGCCAATAA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAA
* **
45217541 TCCTATCTCCCTGAAGTTGCAGTGGAGTGGATTAAAG--AGATAGA
1 TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCA-ATA-A
*
45217585 TCTTATCTCTCTGAAGTTGCAG
1 TCTTATCTCCCTGAAGTTGCAG
45217607 AAAGCAGATC
Statistics
Matches: 94, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
42 3 0.03
43 5 0.05
44 58 0.62
45 28 0.30
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAA
Found at i:45217745 original size:50 final size:45
Alignment explanation
Indices: 45217623--45217746 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 45
45217613 GATCGCATCT
* * *
45217623 AGTCTTGTCTCCCTAAAGTTACAGTGGAGCAGACCCAAGAAAGCG
1 AGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCCAAGAAAGCA
** * *
45217668 AGTCTTATCTCCCTGAAGTTGTAGTGGAGCAGACTCAAGTTGAAGCTATA
1 AGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCCAAG--AAAGC---A
*
45217718 AGTCTTATCTCCCTGAAGTTACGGTGGAG
1 AGTCTTATCTCCCTGAAGTTACAGTGGAG
45217747 TAGATGGAAG
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
45 34 0.53
47 4 0.06
50 26 0.41
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (45 bp):
AGTCTTATCTCCCTGAAGTTACAGTGGAGCAGACCCAAGAAAGCA
Found at i:45219097 original size:19 final size:18
Alignment explanation
Indices: 45219060--45219098 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
45219050 TAATTAAATA
* *
45219060 ATGTAGTTATTTTTTTAT
1 ATGTAATTATTTATTTAT
45219078 ATGTAATTATTTAATTTAT
1 ATGTAATTATTT-ATTTAT
45219097 AT
1 AT
45219099 ATATATGTAC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (18 bp):
ATGTAATTATTTATTTAT
Found at i:45219126 original size:19 final size:19
Alignment explanation
Indices: 45219102--45219142 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 19
45219092 TTTATATATA
45219102 TATGTAC-ATTTATTGTTTT
1 TATGTACAATTTATT-TTTT
45219121 TATGTACATATTTATTTTTT
1 TATGTACA-ATTTATTTTTT
45219141 TA
1 TA
45219143 AACGAATCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 7 0.35
20 6 0.30
21 7 0.35
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.63
Consensus pattern (19 bp):
TATGTACAATTTATTTTTT
Found at i:45219696 original size:26 final size:25
Alignment explanation
Indices: 45219657--45219707 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 25
45219647 CATTGTCATT
**
45219657 GTTTATTTTTTATTTATATTAATTTC
1 GTTTATTTACTATTTATATT-ATTTC
45219683 GTTTATTTACTATTTATATTATTTC
1 GTTTATTTACTATTTATATTATTTC
45219708 TATACAATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 5 0.22
26 18 0.78
ACGTcount: A:0.24, C:0.06, G:0.04, T:0.67
Consensus pattern (25 bp):
GTTTATTTACTATTTATATTATTTC
Found at i:45221644 original size:20 final size:20
Alignment explanation
Indices: 45221619--45221663 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
45221609 AATGTGTCTT
45221619 GTCTTAACCAAATTAATTGG
1 GTCTTAACCAAATTAATTGG
** *
45221639 GTCTTAACTTAATTAATTGT
1 GTCTTAACCAAATTAATTGG
45221659 GTCTT
1 GTCTT
45221664 GTTCTATTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (20 bp):
GTCTTAACCAAATTAATTGG
Found at i:45222671 original size:23 final size:23
Alignment explanation
Indices: 45222611--45222673 Score: 65
Period size: 23 Copynumber: 2.7 Consensus size: 23
45222601 CCTTTTTGAG
45222611 CCAATTCGTACCAAAAATCCCATA
1 CCAATTCGTACC-AAAATCCCATA
* * * *
45222635 CCATTTCATACCAATA-CCCAATT
1 CCAATTCGTACCAAAATCCC-ATA
45222658 CCAATTCGTACCAAAA
1 CCAATTCGTACCAAAA
45222674 CCAAAACCAT
Statistics
Matches: 31, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
22 3 0.10
23 18 0.58
24 10 0.32
ACGTcount: A:0.40, C:0.33, G:0.03, T:0.24
Consensus pattern (23 bp):
CCAATTCGTACCAAAATCCCATA
Found at i:45226168 original size:21 final size:22
Alignment explanation
Indices: 45226127--45226169 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
45226117 ATTTGAGTAA
*
45226127 AGTTTGTAATTTTATACAATTT
1 AGTTTGTAATTTTACACAATTT
*
45226149 AGTTT-TAATTTTACATAATTT
1 AGTTTGTAATTTTACACAATTT
45226170 TTCTATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.33, C:0.05, G:0.07, T:0.56
Consensus pattern (22 bp):
AGTTTGTAATTTTACACAATTT
Found at i:45238396 original size:13 final size:13
Alignment explanation
Indices: 45238380--45238416 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
45238370 TATAATCGAT
45238380 TCATATAGCCATA
1 TCATATAGCCATA
* *
45238393 TCATATAACCATT
1 TCATATAGCCATA
45238406 TCATATAGCCA
1 TCATATAGCCA
45238417 AGTGATTGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.38, C:0.24, G:0.05, T:0.32
Consensus pattern (13 bp):
TCATATAGCCATA
Found at i:45238769 original size:12 final size:12
Alignment explanation
Indices: 45238752--45238776 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
45238742 TTGGGGAAAA
45238752 ATATAAATATTC
1 ATATAAATATTC
45238764 ATATAAATATTC
1 ATATAAATATTC
45238776 A
1 A
45238777 CACTTGGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (12 bp):
ATATAAATATTC
Found at i:45246988 original size:59 final size:59
Alignment explanation
Indices: 45246916--45247035 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
45246906 GAAAATTGAG
45246916 TTAGTTTATTTTAAGTTTTAGCTGTACTATTCATGCATTGCATGTAGTTGTAATTTTCA
1 TTAGTTTATTTTAAGTTTTAGCTGTACTATTCATGCATTGCATGTAGTTGTAATTTTCA
45246975 TTAGTTTATTTTAAGTTTTAGCTGTACTATTCATGCATTGCATGTAGTTGTAATTTTCA
1 TTAGTTTATTTTAAGTTTTAGCTGTACTATTCATGCATTGCATGTAGTTGTAATTTTCA
45247034 TT
1 TT
45247036 TTGTTAGTGA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.52
Consensus pattern (59 bp):
TTAGTTTATTTTAAGTTTTAGCTGTACTATTCATGCATTGCATGTAGTTGTAATTTTCA
Found at i:45252593 original size:25 final size:25
Alignment explanation
Indices: 45252517--45252594 Score: 81
Period size: 25 Copynumber: 3.2 Consensus size: 25
45252507 GATAATCACT
* * *
45252517 TTAATATTAAATTACTAAAATACTA
1 TTAATATTAAACTATTAAAATAATA
* *
45252542 TTAATA-T-AAGTATTAAATTAA-A
1 TTAATATTAAACTATTAAAATAATA
45252564 TTTAATATTAAACTATTAAAATAATA
1 -TTAATATTAAACTATTAAAATAATA
45252590 TTAAT
1 TTAAT
45252595 TTTGGAATAG
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
22 1 0.02
23 16 0.37
24 2 0.05
25 23 0.53
26 1 0.02
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.42
Consensus pattern (25 bp):
TTAATATTAAACTATTAAAATAATA
Found at i:45265285 original size:13 final size:14
Alignment explanation
Indices: 45265269--45265302 Score: 54
Period size: 13 Copynumber: 2.6 Consensus size: 14
45265259 GAAAGTATTT
45265269 TTTTCTAAA-AATA
1 TTTTCTAAATAATA
45265282 TTTT-TAAATAATA
1 TTTTCTAAATAATA
45265295 TTTTCTAA
1 TTTTCTAA
45265303 TCACAACAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 4 0.21
13 12 0.63
14 3 0.16
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (14 bp):
TTTTCTAAATAATA
Found at i:45269833 original size:54 final size:54
Alignment explanation
Indices: 45269771--45269880 Score: 211
Period size: 54 Copynumber: 2.0 Consensus size: 54
45269761 CTTCCCAATT
45269771 TAGAAAAAAGATTATTTTAACTCTCCATAGGAAAAGTTAACCTTTATTAATTTTG
1 TAGAAAAAA-ATTATTTTAACTCTCCATAGGAAAAGTTAACCTTTATTAATTTTG
45269826 TAGAAAAAAATTATTTTAACTCTCCATAGGAAAAGTTAACCTTTATTAATTTTG
1 TAGAAAAAAATTATTTTAACTCTCCATAGGAAAAGTTAACCTTTATTAATTTTG
45269880 T
1 T
45269881 TGATATGTCA
Statistics
Matches: 55, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
54 46 0.84
55 9 0.16
ACGTcount: A:0.40, C:0.11, G:0.10, T:0.39
Consensus pattern (54 bp):
TAGAAAAAAATTATTTTAACTCTCCATAGGAAAAGTTAACCTTTATTAATTTTG
Found at i:45269991 original size:20 final size:21
Alignment explanation
Indices: 45269943--45269990 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
45269933 TTTAAAAATA
* * *
45269943 TTAAAAACACTTTTTTTATTT
1 TTAAAAATAGTTTTTATATTT
45269964 TTAAAAATAGTTTTTATATTT
1 TTAAAAATAGTTTTTATATTT
45269985 TTAAAA
1 TTAAAA
45269991 TTTTTAAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.54
Consensus pattern (21 bp):
TTAAAAATAGTTTTTATATTT
Found at i:45274002 original size:11 final size:11
Alignment explanation
Indices: 45273971--45274006 Score: 56
Period size: 11 Copynumber: 3.3 Consensus size: 11
45273961 GAGTAAAAAG
45273971 AATTATATAATA
1 AATTATATAA-A
45273983 AATTA-ATAAA
1 AATTATATAAA
45273993 AATTATATAAA
1 AATTATATAAA
45274004 AAT
1 AAT
45274007 AAAACCTAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
10 6 0.26
11 12 0.52
12 5 0.22
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AATTATATAAA
Found at i:45277057 original size:73 final size:72
Alignment explanation
Indices: 45276980--45277150 Score: 168
Period size: 73 Copynumber: 2.3 Consensus size: 72
45276970 CTGTATATTG
* *
45276980 GGAAGCTCATAAGAGCCATA-ATCAGGAAGCTCATA-CGAGCCAATAACGGGTAA-CTTCGAAGA
1 GGAAGCTCA-AAGAGCCATATATCAGGAAGCTCA-AGCGAGCC-ATAACGGG-AAGCTCCAAAGA
45277042 GCCATTAATTA
62 GCCATTAATTA
** * * * ** *
45277053 GGAAGCTCCGGATAGCCATATATCGGGAAGTTCAAGCGAGCCATATTGGGAAGCTCCAAAGAGCT
1 GGAAGCT-CAAAGAGCCATATATCAGGAAGCTCAAGCGAGCCATAACGGGAAGCTCCAAAGAGCC
45277118 ATTAATTA
65 ATTAATTA
45277126 GGAAGCTTACAAAGAGCCATATATC
1 GGAAGC-T-CAAAGAGCCATATATC
45277151 GGGACGCTTA
Statistics
Matches: 79, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
72 2 0.03
73 45 0.57
74 32 0.41
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.20
Consensus pattern (72 bp):
GGAAGCTCAAAGAGCCATATATCAGGAAGCTCAAGCGAGCCATAACGGGAAGCTCCAAAGAGCCA
TTAATTA
Found at i:45277820 original size:20 final size:20
Alignment explanation
Indices: 45277774--45277822 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
45277764 AATAGCAACC
45277774 CATTTATTT-CATAAAATTTA
1 CATTT-TTTCCATAAAATTTA
* * *
45277794 GAATTTTTCCATAAATTTTA
1 CATTTTTTCCATAAAATTTA
45277814 CATTTTTTC
1 CATTTTTTC
45277823 AATTTAGTCC
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 3 0.13
20 20 0.87
ACGTcount: A:0.33, C:0.12, G:0.02, T:0.53
Consensus pattern (20 bp):
CATTTTTTCCATAAAATTTA
Found at i:45280604 original size:93 final size:98
Alignment explanation
Indices: 45280480--45280681 Score: 263
Period size: 98 Copynumber: 2.1 Consensus size: 98
45280470 TTTTTAATTC
* *
45280480 ATATTTTTAATTAATAACTCTTTTATTTATATAAATAAAATAATAAATTTGTAGTTATATAAT-A
1 ATATTTTTAATTAAT-A-TCTTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAA
45280544 AA-TATATA-TTTTATATATATCATTATGTTAAAAA
64 AATTATATATTTTTATATATATCATTATGTT-AAAA
* *
45280578 ATATTTTTAATTAAT-T-TTTTA-TTATATAAATAAATTACTAAATATGTAATTATATAATAAAA
1 ATATTTTTAATTAATATCTTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAA
* *
45280640 TTATATATTTTTTTATATTTATCATTATGTTAAAT
66 TTATATA--TTTTTATATATATCATTATGTTAAAA
45280675 ATATTTT
1 ATATTTT
45280682 ATTTTAAACT
Statistics
Matches: 93, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
93 33 0.35
94 8 0.09
95 7 0.08
97 10 0.11
98 35 0.38
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (98 bp):
ATATTTTTAATTAATATCTTTTATTTATATAAATAAAATAATAAATATGTAATTATATAATAAAA
TTATATATTTTTATATATATCATTATGTTAAAA
Found at i:45280958 original size:17 final size:18
Alignment explanation
Indices: 45280936--45280973 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
45280926 TAATGATATG
45280936 TATATAATATA-AT-TTTT
1 TATATAAT-TACATATTTT
45280953 TATATAATTACATATTTT
1 TATATAATTACATATTTT
45280971 TAT
1 TAT
45280974 TTTATTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 2 0.11
17 10 0.53
18 7 0.37
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (18 bp):
TATATAATTACATATTTT
Found at i:45283989 original size:21 final size:21
Alignment explanation
Indices: 45283965--45284015 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
45283955 TTACTTTTCA
45283965 TTTAGCTCTTACGAGCTTCTG
1 TTTAGCTCTTACGAGCTTCTG
* * * *
45283986 TTTAACTCATATGAGTTTCTG
1 TTTAGCTCTTACGAGCTTCTG
*
45284007 TTCAGCTCT
1 TTTAGCTCT
45284016 ACTAAGCTTC
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.45
Consensus pattern (21 bp):
TTTAGCTCTTACGAGCTTCTG
Found at i:45284077 original size:42 final size:42
Alignment explanation
Indices: 45283959--45284087 Score: 127
Period size: 42 Copynumber: 3.1 Consensus size: 42
45283949 TCATGTTTAC
* * * * * *
45283959 TTTTCATTTAGCTCTTACGAGCTTCTGTTTAACTCATATGAG
1 TTTTCGTTAAGCTCTTACAAGCTTCTGTTTAACCCTTATGGG
* *
45284001 -TTTCTGTTCAGCTC-TACTAAGCTTCTATTTAACCCTTATGGG
1 TTTTC-GTTAAGCTCTTAC-AAGCTTCTGTTTAACCCTTATGGG
* * *
45284043 TTTTCGTTAAGCTCTTACAAGCTTCCGTTCAACCCTTATTGG
1 TTTTCGTTAAGCTCTTACAAGCTTCTGTTTAACCCTTATGGG
45284085 TTT
1 TTT
45284088 CTGCTTAACT
Statistics
Matches: 71, Mismatches: 12, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
41 7 0.10
42 57 0.80
43 7 0.10
ACGTcount: A:0.19, C:0.22, G:0.14, T:0.44
Consensus pattern (42 bp):
TTTTCGTTAAGCTCTTACAAGCTTCTGTTTAACCCTTATGGG
Found at i:45286284 original size:6 final size:6
Alignment explanation
Indices: 45286273--45286303 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
45286263 GCCATGTCTA
*
45286273 GCCCGT GCCCGT GCCCGT GACCGT GCCCGT G
1 GCCCGT GCCCGT GCCCGT GCCCGT GCCCGT G
45286304 TAACTCTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.03, C:0.45, G:0.35, T:0.16
Consensus pattern (6 bp):
GCCCGT
Found at i:45287090 original size:21 final size:21
Alignment explanation
Indices: 45287061--45287102 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
45287051 AGAAAGATAA
*
45287061 CTACGTAAGCAATAAATGCTT
1 CTACATAAGCAATAAATGCTT
*
45287082 CTACATAAGCAATGAATGCTT
1 CTACATAAGCAATAAATGCTT
45287103 AGTAAGCTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (21 bp):
CTACATAAGCAATAAATGCTT
Found at i:45287926 original size:14 final size:15
Alignment explanation
Indices: 45287897--45287927 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
45287887 GTTAAATTGG
45287897 AAAGATGATAAAATA
1 AAAGATGATAAAATA
45287912 AAAGATGAT-AAATA
1 AAAGATGATAAAATA
45287926 AA
1 AA
45287928 TTAAATAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.68, C:0.00, G:0.13, T:0.19
Consensus pattern (15 bp):
AAAGATGATAAAATA
Found at i:45288836 original size:25 final size:25
Alignment explanation
Indices: 45288807--45288894 Score: 88
Period size: 25 Copynumber: 3.5 Consensus size: 25
45288797 GATACATCAA
45288807 AGCTCTTATGAGCATCCCGATATTT
1 AGCTCTTATGAGCATCCCGATATTT
* * *
45288832 GGCTCTTATGAGCTTCCCGTTATTT
1 AGCTCTTATGAGCATCCCGATATTT
* * * **
45288857 AGCTCGTA-GAAGCATCTCGACATAC
1 AGCTCTTATG-AGCATCCCGATATTT
45288882 AGCTCTTATGAGC
1 AGCTCTTATGAGC
45288895 TTCTCGATTA
Statistics
Matches: 49, Mismatches: 12, Indels: 4
0.75 0.18 0.06
Matches are distributed among these distances:
24 1 0.02
25 47 0.96
26 1 0.02
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (25 bp):
AGCTCTTATGAGCATCCCGATATTT
Found at i:45289057 original size:50 final size:51
Alignment explanation
Indices: 45289003--45289098 Score: 115
Period size: 50 Copynumber: 1.9 Consensus size: 51
45288993 TCTCGATAAT
* *
45289003 TGGCTCGCAAGAGCTTCCC-TTTACATGGCTCACATGAGC-TTCCTGTTATA
1 TGGCTCGAAAGAGCTACCCATTTACAT-GCTCACATGAGCATTCCTGTTATA
* * * *
45289053 TGGCTTGAAAGAGGTACCCATTTATATGTTCACATGAGCATTCCTG
1 TGGCTCGAAAGAGCTACCCATTTACATGCTCACATGAGCATTCCTG
45289099 AATATGAATT
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
50 26 0.68
51 12 0.32
ACGTcount: A:0.23, C:0.24, G:0.21, T:0.32
Consensus pattern (51 bp):
TGGCTCGAAAGAGCTACCCATTTACATGCTCACATGAGCATTCCTGTTATA
Found at i:45299050 original size:40 final size:40
Alignment explanation
Indices: 45298993--45299129 Score: 159
Period size: 40 Copynumber: 3.4 Consensus size: 40
45298983 AATCTATCAG
* *
45298993 ACACACCAAATAGAAGCTCATAAGAGCT-AGTCCAACCGAA
1 ACACACCAAACAAAAGCTCATAAGAGCTGA-TCCAACCGAA
* * *
45299033 GCACACCAGACAAAAGCTCATAAGAGCTGATCTAACCGAA
1 ACACACCAAACAAAAGCTCATAAGAGCTGATCCAACCGAA
* * *
45299073 ACACACCAAACAGAAGTTTATAAGAGCTGATCCAACCGAA
1 ACACACCAAACAAAAGCTCATAAGAGCTGATCCAACCGAA
* *
45299113 ACGCGCCAAACAGAAAG
1 ACACACCAAACA-AAAG
45299130 TATAACACGA
Statistics
Matches: 81, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
40 77 0.95
41 4 0.05
ACGTcount: A:0.45, C:0.27, G:0.17, T:0.12
Consensus pattern (40 bp):
ACACACCAAACAAAAGCTCATAAGAGCTGATCCAACCGAA
Found at i:45313735 original size:16 final size:17
Alignment explanation
Indices: 45313701--45313735 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
45313691 TAGAATTGGG
*
45313701 TTGAGAAATTTATTTAA
1 TTGAGAAATTTAATTAA
45313718 TTGAGAAA-TTAATTAA
1 TTGAGAAATTTAATTAA
45313734 TT
1 TT
45313736 TAAATTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (17 bp):
TTGAGAAATTTAATTAA
Found at i:45315258 original size:21 final size:21
Alignment explanation
Indices: 45315233--45315273 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
45315223 AGTAAATACA
45315233 ATGA-GTAAGTACAATTACAAC
1 ATGAGGTAAGTA-AATTACAAC
*
45315254 ATGAGGTAATTAAATTACAA
1 ATGAGGTAAGTAAATTACAA
45315274 TTGTTAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 12 0.67
22 6 0.33
ACGTcount: A:0.49, C:0.10, G:0.15, T:0.27
Consensus pattern (21 bp):
ATGAGGTAAGTAAATTACAAC
Found at i:45317378 original size:12 final size:12
Alignment explanation
Indices: 45317361--45317398 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
45317351 ATGCATTTAG
45317361 AATTATAATTTT
1 AATTATAATTTT
45317373 AATTAT-A-TTT
1 AATTATAATTTT
*
45317383 AATTAAAATTTT
1 AATTATAATTTT
45317395 AATT
1 AATT
45317399 GTTTACAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
10 8 0.35
11 2 0.09
12 13 0.57
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
AATTATAATTTT
Found at i:45317408 original size:22 final size:22
Alignment explanation
Indices: 45317355--45317408 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
45317345 ATGGTTATGC
* *
45317355 ATTTAGAATTATAATTTTAATT
1 ATTTACAATTAAAATTTTAATT
*
45317377 ATATT-TAATTAAAATTTTAATT
1 AT-TTACAATTAAAATTTTAATT
*
45317399 GTTTACAATT
1 ATTTACAATT
45317409 CGATACAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
21 2 0.08
22 22 0.85
23 2 0.08
ACGTcount: A:0.41, C:0.02, G:0.04, T:0.54
Consensus pattern (22 bp):
ATTTACAATTAAAATTTTAATT
Found at i:45320215 original size:27 final size:27
Alignment explanation
Indices: 45320184--45320351 Score: 149
Period size: 27 Copynumber: 6.2 Consensus size: 27
45320174 ACAAAGACTA
* *
45320184 TCCTTTCATAATT-CGCTACATAGGTGT
1 TCCTTTCAT-ATTGCGCCACAAAGGTGT
**
45320211 TCCTTTCATATTGCGCCACAAAGGCAT
1 TCCTTTCATATTGCGCCACAAAGGTGT
* *
45320238 TCTTTTCATATTGCACCACAAAGGTGT
1 TCCTTTCATATTGCGCCACAAAGGTGT
* * **
45320265 TCCTTTCATATTGTGCCACAATGGCAT
1 TCCTTTCATATTGCGCCACAAAGGTGT
* ** **
45320292 TCTTTTCATATTATGCCACAAAGGCAT
1 TCCTTTCATATTGCGCCACAAAGGTGT
* * * *
45320319 TCTTTTTATATTGCGCCACAAAAGCGT
1 TCCTTTCATATTGCGCCACAAAGGTGT
45320346 TCCTTT
1 TCCTTT
45320352 TCTGACGTGT
Statistics
Matches: 117, Mismatches: 23, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
26 3 0.03
27 114 0.97
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (27 bp):
TCCTTTCATATTGCGCCACAAAGGTGT
Found at i:45320230 original size:54 final size:54
Alignment explanation
Indices: 45320171--45320340 Score: 164
Period size: 54 Copynumber: 3.1 Consensus size: 54
45320161 AAAATTTATT
* * *
45320171 GCCACAAAGAC-TATCCTTTCATAATT-CGCTACATAGGTGTTCCTTTCATATTGC
1 GCCACAAAGACAT-TCCTTTCAT-ATTGCACCACAAAGGTGTTCCTTTCATATTGC
* * *
45320225 GCCACAAAGGCATTCTTTTCATATTGCACCACAAAGGTGTTCCTTTCATATTGT
1 GCCACAAAGACATTCCTTTCATATTGCACCACAAAGGTGTTCCTTTCATATTGC
* * * *** ** * *
45320279 GCCACAATGGCATTCTTTTCATATTATGCCACAAAGGCATTCTTTTTATATTGC
1 GCCACAAAGACATTCCTTTCATATTGCACCACAAAGGTGTTCCTTTCATATTGC
45320333 GCCACAAA
1 GCCACAAA
45320341 AGCGTTCCTT
Statistics
Matches: 98, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
53 3 0.03
54 94 0.96
55 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.14, T:0.35
Consensus pattern (54 bp):
GCCACAAAGACATTCCTTTCATATTGCACCACAAAGGTGTTCCTTTCATATTGC
Found at i:45320259 original size:81 final size:81
Alignment explanation
Indices: 45320172--45320340 Score: 191
Period size: 81 Copynumber: 2.1 Consensus size: 81
45320162 AAATTTATTG
* ** *
45320172 CCACAAAGACT-ATCCTTTCATAATT-CGCTAC-ATAGGTGTTCCTTTCATATTGCGCCACAAAG
1 CCACAAAG-CTGATCCTTTCAT-ATTGCGCCACAAT-GGCATTCCTTTCATATTACGCCACAAAG
45320234 GCATTCTTTTCATATTGCA
63 GCATTCTTTTCATATTGCA
* * * * *
45320253 CCACAAAGGTGTTCCTTTCATATTGTGCCACAATGGCATTCTTTTCATATTATGCCACAAAGGCA
1 CCACAAAGCTGATCCTTTCATATTGCGCCACAATGGCATTCCTTTCATATTACGCCACAAAGGCA
* *
45320318 TTCTTTTTATATTGCG
66 TTCTTTTCATATTGCA
45320334 CCACAAA
1 CCACAAA
45320341 AGCGTTCCTT
Statistics
Matches: 74, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
80 4 0.05
81 68 0.92
82 2 0.03
ACGTcount: A:0.27, C:0.25, G:0.13, T:0.35
Consensus pattern (81 bp):
CCACAAAGCTGATCCTTTCATATTGCGCCACAATGGCATTCCTTTCATATTACGCCACAAAGGCA
TTCTTTTCATATTGCA
Found at i:45331648 original size:32 final size:31
Alignment explanation
Indices: 45331607--45331669 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 31
45331597 CTTAAATGAA
*
45331607 CTTGTGTTTGTATGGTTGCAAATTCCCTTTTT
1 CTTGTGTTTGCATGGTTGCAAATT-CCTTTTT
45331639 CTTGTGTTTGCATGGTTGCAAATTCCTTTTT
1 CTTGTGTTTGCATGGTTGCAAATTCCTTTTT
45331670 GAATATGTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 7 0.23
32 23 0.77
ACGTcount: A:0.13, C:0.16, G:0.19, T:0.52
Consensus pattern (31 bp):
CTTGTGTTTGCATGGTTGCAAATTCCTTTTT
Found at i:45331685 original size:31 final size:32
Alignment explanation
Indices: 45331611--45331686 Score: 93
Period size: 32 Copynumber: 2.4 Consensus size: 32
45331601 AATGAACTTG
** *
45331611 TGTTTGTATGGTTGCAAATTCCCTTTTTCTTG
1 TGTTTGTATGGTTGCAAATTCCCTTTTTAATA
*
45331643 TGTTTGCATGGTTGCAAATT-CCTTTTTGAATA
1 TGTTTGTATGGTTGCAAATTCCCTTTTT-AATA
45331675 TGTTT-TATGGTT
1 TGTTTGTATGGTT
45331687 TCCTTGATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
31 13 0.34
32 25 0.66
ACGTcount: A:0.16, C:0.12, G:0.20, T:0.53
Consensus pattern (32 bp):
TGTTTGTATGGTTGCAAATTCCCTTTTTAATA
Found at i:45334722 original size:153 final size:153
Alignment explanation
Indices: 45334465--45334880 Score: 581
Period size: 153 Copynumber: 2.7 Consensus size: 153
45334455 AATCAAAACC
* * * * *
45334465 TTATTATGAAATAGTT-AAAAAAATCAAAGCTTTGTTTTAAAATTTTAAATTTTCCTTTGAAATG
1 TTATTTTGAAATAGTTGAAAAAAATCAAAACTTTATTTTAAAATTTTAAAATTTCCTTTAAAATG
45334529 ACTTAAAAAAACATATTTTTATTTTTCAAAATCTAAACTTTCTCTCTTTTTGAAAAAAAAAACAC
66 AC-TAAAAAAACATATTTTTATTTTT-AAAATCTAAACTTTCTCTCTTTTTGAAAAAAAAAACAC
45334594 TA-TTTTTCTTAAAGA-CTAAAGCTT
129 TATTTTTTCTTAAA-ATCTAAAGCTT
* *
45334618 TTATTTTGAAATAGTTGAAAAAAATCAAAATTTTATTTTAAAATTTTAAACTTTCCTTTAAAATG
1 TTATTTTGAAATAGTTGAAAAAAATCAAAACTTTATTTTAAAATTTTAAAATTTCCTTTAAAATG
* * ****
45334683 ACTAAAAAAACAGATTTTTATCTTTTAAAATCTAGACTTT-TC-CTTTTTTTTTAAAAAAACACT
66 ACTAAAAAAACATATTTTTAT-TTTTAAAATCTAAACTTTCTCTCTTTTTGAAAAAAAAAACACT
*
45334746 ATTTTTTCTTAAAATTTAAAGCTT
130 ATTTTTTCTTAAAATCTAAAGCTT
*
45334770 TTACTTTGAAATAGTTGAAAAATAATCAAAACTTTATTTTAAAATTTTAAAATTTCCTTTAAAAT
1 TTATTTTGAAATAGTTGAAAAA-AATCAAAACTTTATTTTAAAATTTTAAAATTTCCTTTAAAAT
* *
45334835 AACTAAAAAAAACATATTTTTATTTGCTAAAATCTAAACTTTCTCT
65 GACT-AAAAAAACATATTTTTATTT-TTAAAATCTAAACTTTCTCT
45334881 TTTAAAAAAA
Statistics
Matches: 234, Mismatches: 20, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
151 19 0.08
152 42 0.18
153 91 0.39
154 80 0.34
155 2 0.01
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.43
Consensus pattern (153 bp):
TTATTTTGAAATAGTTGAAAAAAATCAAAACTTTATTTTAAAATTTTAAAATTTCCTTTAAAATG
ACTAAAAAAACATATTTTTATTTTTAAAATCTAAACTTTCTCTCTTTTTGAAAAAAAAAACACTA
TTTTTTCTTAAAATCTAAAGCTT
Found at i:45335770 original size:42 final size:42
Alignment explanation
Indices: 45335723--45336023 Score: 381
Period size: 42 Copynumber: 7.2 Consensus size: 42
45335713 TCATATACAG
* * * ** *
45335723 TGCAATAAAAACTAAATGGACCTCTACACCCCGGCCTTTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
*
45335765 TGCAATGAAAAGTAAACGGACCTCCACACCTGGGCCTCTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* * *
45335807 TGTAATGAAAAGTAAACGGACCT-C-CACCTGGGACTCTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* * ** * *
45335847 TGCAATGAAAAGTAAATGGGCCTCCATATATAGGCCTCTACA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* * *
45335889 TGCAATGAAAAGTGAATGGACCTCCACACCTGGGTCTCTATA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* *
45335931 TGCAATGAAAAGTAAGTGGACCTCCACACCTAGGCCTCTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
* *
45335973 TGCAATGAAAAGTAAGTAGACCTCCACACCTGGGCCTCTAAA
1 TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
45336015 TGCAATGAA
1 TGCAATGAA
45336024 TGTTTTCTTT
Statistics
Matches: 224, Mismatches: 33, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
40 35 0.16
41 2 0.01
42 187 0.83
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.21
Consensus pattern (42 bp):
TGCAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAA
Found at i:45340268 original size:26 final size:25
Alignment explanation
Indices: 45340220--45340275 Score: 67
Period size: 26 Copynumber: 2.2 Consensus size: 25
45340210 GAAGCTCTGG
*
45340220 AGAGCCATTAATCAAAAATCTCACAA
1 AGAGCCATTAATCAAAAAGCTCA-AA
* **
45340246 AGAGCCTTTAATCAGGAAGCTCAAA
1 AGAGCCATTAATCAAAAAGCTCAAA
45340271 AGAGC
1 AGAGC
45340276 TAAGGTGTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.45, C:0.21, G:0.16, T:0.18
Consensus pattern (25 bp):
AGAGCCATTAATCAAAAAGCTCAAA
Found at i:45355111 original size:20 final size:21
Alignment explanation
Indices: 45355082--45355126 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
45355072 CAGACACAAG
*
45355082 AATAACAAAGTC-AATAAAAT
1 AATAACAAAGTCAAATAAAAA
*
45355102 AATAATAAAGTCAAATAAAAA
1 AATAACAAAGTCAAATAAAAA
45355123 AATA
1 AATA
45355127 CGAAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.69, C:0.07, G:0.04, T:0.20
Consensus pattern (21 bp):
AATAACAAAGTCAAATAAAAA
Found at i:45357975 original size:157 final size:152
Alignment explanation
Indices: 45357771--45358186 Score: 577
Period size: 151 Copynumber: 2.7 Consensus size: 152
45357761 AATCAAAACC
* *
45357771 TTATTTCGAAATAGTT-AAAAAAATCAAAACTTTGTTTTAAAATTTTAAACATTCCTTTAAAATG
1 TTATTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATG
* * *
45357835 ACTTAAAAAAACATATTTTTATTTTTTAAAAATTTAAACTTTCTCCCTTTTTTTTTAAAAAATAA
66 ACTTAAAAAAACAAATTTTTATTTTTT-AAAATCTAAACTTTCTCCC-TTTTTTTAAAAAAAT-A
*
45357900 CTATTTTTCTTAAAGATTAAAGTTT
128 CTATTTTTCTTAAAGATTAAAGCTT
*
45357925 TTATTTTGAAATAGTTGAAAAAAAAATCAAAATTTTGTTTTAAAATTTTAAACTTTCCTTTAAAA
1 TTATTTTGAAATAGTTG--AAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAA
* *
45357990 TGAC-TAAAAAAAGCAGATTTTTATTTTTCAAAATCTAAACTTTCT-CCTTTTTTTAAAAAAATA
64 TGACTTAAAAAAA-CAAATTTTTATTTTTTAAAATCTAAACTTTCTCCCTTTTTTTAAAAAAATA
*
45358053 TTATTTTTCTTAAAGATTAAAGCTT
128 CTATTTTTCTTAAAGATTAAAGCTT
* * * * * * *
45358078 TTACTTTGAAATACTTGAAAAAAATCAGAACTTTGTTTTAAATTTTTAAACTTTCATTTAAGATA
1 TTATTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATG
* * *
45358143 ACTAAAAAAAACAAATTTTTATTTGTTAAAATCTAAATTTTCTC
66 ACTTAAAAAAACAAATTTTTATTTTTTAAAATCTAAACTTTCTC
45358187 TTTTTAAAAA
Statistics
Matches: 234, Mismatches: 22, Indels: 14
0.87 0.08 0.05
Matches are distributed among these distances:
151 72 0.31
152 7 0.03
153 39 0.17
154 29 0.12
155 2 0.01
156 23 0.10
157 62 0.26
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (152 bp):
TTATTTTGAAATAGTTGAAAAAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATG
ACTTAAAAAAACAAATTTTTATTTTTTAAAATCTAAACTTTCTCCCTTTTTTTAAAAAAATACTA
TTTTTCTTAAAGATTAAAGCTT
Found at i:45358152 original size:153 final size:149
Alignment explanation
Indices: 45357728--45358199 Score: 569
Period size: 151 Copynumber: 3.1 Consensus size: 149
45357718 AAAATCAAAG
* * * * * *
45357728 TTTTCTTTAGAAAAAATCATTACTTTTCTTAAAAATCAAAAC-CTTATTTCGAAATAGTT-AAAA
1 TTTT-TTTA-AAAAAATAATTATTTTTCTTAAAGATTAAAGCTTTTATTT-GAAATAGTTGAAAA
* *
45357791 AAATCAAAACTTTGTTTTAAAATTTTAAACATTCCTTTAAAATGACTTAAAAAAACATATTTTTA
63 AAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGAC-TAAAAAAACAAATTTTTA
*
45357856 TTTTTTAAAAATTTAAACTTTCTCCC
127 -TTTTT-AAAATCTAAACTTTCT-CC
* * *
45357882 TTTTTTTTTAAAAAATAACTATTTTTCTTAAAGATTAAAGTTTTTATTTTGAAATAGTTGAAAAA
1 -TTTTTTTAAAAAAATAATTATTTTTCTTAAAGATTAAAGCTTTTA-TTTGAAATAGTTG--AAA
* *
45357947 AAAATCAAAATTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAAGCAGATTTTT
62 AAAATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAA-CAAATTTTT
45358012 ATTTTTCAAAATCTAAACTTTCTCC
126 ATTTTT-AAAATCTAAACTTTCTCC
*
45358037 TTTTTTTAAAAAAAT-ATTATTTTTCTTAAAGATTAAAGCTTTTACTTTGAAATACTTGAAAAAA
1 TTTTTTTAAAAAAATAATTATTTTTCTTAAAGATTAAAGCTTTTA-TTTGAAATAGTTGAAAAAA
* * * * *
45358101 ATCAGAACTTTGTTTTAAATTTTTAAACTTTCATTTAAGATAACTAAAAAAAACAAATTTTTATT
65 ATCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACT-AAAAAAACAAATTTTTATT
45358166 TGTTAAAATCTAAA-TTT-T-C
129 T-TTAAAATCTAAACTTTCTCC
*
45358185 TCTTTTTAAAAAAAT
1 TTTTTTTAAAAAAAT
45358200 TCAAAATTTT
Statistics
Matches: 282, Mismatches: 27, Indels: 23
0.85 0.08 0.07
Matches are distributed among these distances:
148 15 0.05
149 1 0.00
150 3 0.01
151 67 0.24
152 9 0.03
153 64 0.23
154 29 0.10
155 9 0.03
156 28 0.10
157 57 0.20
ACGTcount: A:0.42, C:0.10, G:0.05, T:0.44
Consensus pattern (149 bp):
TTTTTTTAAAAAAATAATTATTTTTCTTAAAGATTAAAGCTTTTATTTGAAATAGTTGAAAAAAA
TCAAAACTTTGTTTTAAAATTTTAAACTTTCCTTTAAAATGACTAAAAAAACAAATTTTTATTTT
TAAAATCTAAACTTTCTCC
Found at i:45358244 original size:18 final size:19
Alignment explanation
Indices: 45358223--45358258 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
45358213 TAAAATCAAG
*
45358223 CCTTTTTTTTA-AAAGAAA
1 CCTTTATTTTAGAAAGAAA
45358241 CCTTTATTTTAGAAAGAA
1 CCTTTATTTTAGAAAGAA
45358259 GAGGGAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (19 bp):
CCTTTATTTTAGAAAGAAA
Found at i:45360751 original size:20 final size:19
Alignment explanation
Indices: 45360721--45360778 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
45360711 TCTTAACAAT
45360721 AATTGTAAAAAAAATTAAAA
1 AATT-TAAAAAAAATTAAAA
*
45360741 AATCTTAAAAATAAATAAAAA
1 AAT-TTAAAAA-AAATTAAAA
* *
45360762 AATTCATAAAAAATTAA
1 AATTTAAAAAAAATTAA
45360779 TTGCAACAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
19 6 0.19
20 14 0.44
21 12 0.38
ACGTcount: A:0.69, C:0.03, G:0.02, T:0.26
Consensus pattern (19 bp):
AATTTAAAAAAAATTAAAA
Found at i:45360756 original size:21 final size:21
Alignment explanation
Indices: 45360726--45360774 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
45360716 ACAATAATTG
* *
45360726 TAAAAAAAATTAAAAAA-TCT
1 TAAAAAAAATAAAAAAATTCA
45360746 TAAAAATAAATAAAAAAATTCA
1 TAAAAA-AAATAAAAAAATTCA
45360768 TAAAAAA
1 TAAAAAA
45360775 TTAATTGCAA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 6 0.24
21 11 0.44
22 8 0.32
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.22
Consensus pattern (21 bp):
TAAAAAAAATAAAAAAATTCA
Found at i:45365477 original size:22 final size:22
Alignment explanation
Indices: 45365438--45365479 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
45365428 GAAACAGAGA
* **
45365438 ATATCAGATACAGTTGCAAAAC
1 ATATCAAATACAAATGCAAAAC
45365460 ATATCAAATACAAATGCAAA
1 ATATCAAATACAAATGCAAA
45365480 TTCCTACCTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.21
Consensus pattern (22 bp):
ATATCAAATACAAATGCAAAAC
Found at i:45367577 original size:46 final size:46
Alignment explanation
Indices: 45367480--45367732 Score: 424
Period size: 46 Copynumber: 5.6 Consensus size: 46
45367470 TACGTATGAT
* * *
45367480 CACTTATCAC-TTGTC-CCTGATCAGATAACTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45367523 CACTTATCACTTTGTCACTTGATCAAATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45367569 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
45367614 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGTTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
45367660 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
45367706 CACTTATCACTTTGTCACTTGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
45367733 AGTACTCAAA
Statistics
Matches: 197, Mismatches: 9, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
43 10 0.05
44 5 0.03
45 62 0.31
46 120 0.61
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:45367604 original size:91 final size:91
Alignment explanation
Indices: 45367480--45367730 Score: 434
Period size: 91 Copynumber: 2.8 Consensus size: 91
45367470 TACGTATGAT
* *
45367480 CACTTATCAC-TTGTC-CCTGATCAGATAACTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
45367543 GATCAAATAAGTGTAGCTAAAGCTAC
66 GATCAAATAAGTGTAGCTAAAGCTAC
45367569 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
* *
45367634 GATCAGATAAGTGTAGCTAAAGTTAC
66 GATCAAATAAGTGTAGCTAAAGCTAC
*
45367660 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTGTCACT
45367725 TGATCA
65 TGATCA
45367731 GAAGTACTCA
Statistics
Matches: 154, Mismatches: 5, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
89 10 0.06
90 5 0.03
91 108 0.70
92 31 0.20
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (91 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTT
GATCAAATAAGTGTAGCTAAAGCTAC
Found at i:45367675 original size:137 final size:134
Alignment explanation
Indices: 45367480--45367732 Score: 434
Period size: 137 Copynumber: 1.9 Consensus size: 134
45367470 TACGTATGAT
*
45367480 CACTTATCACTTGTCCCTGATCAGATAACTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGA
1 CACTTATCACTTGTCCCTGATCAGATAACTGTAGCTAAGCTACCACTTATCACTTTGTCACTTGA
45367545 TCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGG
66 TCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGG
45367610 CTAC
131 CTAC
* * *
45367614 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGTTACCACTTATCACTTTGTCACT
1 CACTTATCAC-TTGTC-CCTGATCAGATAACTGTAGCT-AAGCTACCACTTATCACTTTGTCACT
*
45367679 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
63 TGATCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGA
45367733 AGTACTCAAA
Statistics
Matches: 111, Mismatches: 5, Indels: 3
0.93 0.04 0.03
Matches are distributed among these distances:
134 10 0.09
135 5 0.05
136 19 0.17
137 77 0.69
ACGTcount: A:0.29, C:0.23, G:0.15, T:0.33
Consensus pattern (134 bp):
CACTTATCACTTGTCCCTGATCAGATAACTGTAGCTAAGCTACCACTTATCACTTTGTCACTTGA
TCAAATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAGG
CTAC
Found at i:45370411 original size:48 final size:48
Alignment explanation
Indices: 45370358--45370527 Score: 134
Period size: 48 Copynumber: 3.5 Consensus size: 48
45370348 ATACCGATAT
45370358 ATGGCTCTATTGAGCTTCCCGTTA-TGGCTTGTATGAGCTTCCT-AATA
1 ATGGCTCT-TTGAGCTTCCCGTTATTGGCTTGTATGAGCTTCCTGAATA
** * * * *
45370405 ATTGGCTCTCCGGAGCTTCTCGTTATTTGGCTCT-CAGGAGCTTCCTGATTA
1 A-TGGCTCT-TTGAGCTTCCCGTTA-TTGGCT-TGTATGAGCTTCCTGAATA
* * * *
45370456 ATGGCTCTTTGGAGCTTCCCGATATTGGCTCGTATGAGCTTTCC--ATTT
1 ATGGCTCTTT-GAGCTTCCCGTTATTGGCTTGTATGAGC-TTCCTGAATA
*
45370504 ATGACTCTTATGAGCTTCCCGTTA
1 ATGGCTCTT-TGAGCTTCCCGTTA
45370528 CATGGCTCAC
Statistics
Matches: 97, Mismatches: 17, Indels: 17
0.74 0.13 0.13
Matches are distributed among these distances:
47 1 0.01
48 42 0.43
49 12 0.12
50 37 0.38
51 5 0.05
ACGTcount: A:0.16, C:0.24, G:0.22, T:0.38
Consensus pattern (48 bp):
ATGGCTCTTTGAGCTTCCCGTTATTGGCTTGTATGAGCTTCCTGAATA
Done.