Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 136 of 199
Found at i:45370420 original size:25 final size:24
Alignment explanation
Indices: 45370392--45370474 Score: 71
Period size: 25 Copynumber: 3.3 Consensus size: 24
45370382 TGGCTTGTAT
*
45370392 GAGCTTCCTAATAATTGGCTCTCCG
1 GAGCTTCCT-ATAATTGGCTCTCAG
*
45370417 GAGCTTCTCGT-TATTTGGCTCTCAG
1 GAGCTTC-C-TATAATTGGCTCTCAG
**
45370442 GAGCTTCCTGATTAA-TGGCTCTTTG
1 GAGCTTCCT-A-TAATTGGCTCTCAG
45370467 GAGCTTCC
1 GAGCTTCC
45370475 CGATATTGGC
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
23 1 0.02
24 1 0.02
25 42 0.88
26 3 0.06
27 1 0.02
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (24 bp):
GAGCTTCCTATAATTGGCTCTCAG
Found at i:45370461 original size:50 final size:49
Alignment explanation
Indices: 45370392--45370486 Score: 120
Period size: 50 Copynumber: 1.9 Consensus size: 49
45370382 TGGCTTGTAT
* *
45370392 GAGCTTCCTAATAATTGGCTCTCCGGAGCTTCTCGTTATTTGGCTCTCAG
1 GAGCTTCCTAATAATTGGCTCTCCGGAGCTTCCCGATA-TTGGCTCTCAG
* **
45370442 GAGCTTCCTGATTAA-TGGCTCTTTGGAGCTTCCCGATATTGGCTC
1 GAGCTTCCT-AATAATTGGCTCTCCGGAGCTTCCCGATATTGGCTC
45370487 GTATGAGCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
49 7 0.18
50 28 0.72
51 4 0.10
ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36
Consensus pattern (49 bp):
GAGCTTCCTAATAATTGGCTCTCCGGAGCTTCCCGATATTGGCTCTCAG
Found at i:45370544 original size:25 final size:25
Alignment explanation
Indices: 45370417--45370598 Score: 106
Period size: 25 Copynumber: 7.3 Consensus size: 25
45370407 TGGCTCTCCG
* * * *
45370417 GAGCTTCTCGTTATTTGGCTCTCAG
1 GAGCTTCCCGTTATATGGCTCACAT
* **
45370442 GAGCTTCCTGATTA-ATGGCTC-TTT
1 GAGCTTCCCG-TTATATGGCTCACAT
* **
45370466 GGAGCTTCCCGATAT-TGGCTCGTAT
1 -GAGCTTCCCGTTATATGGCTCACAT
* * * **
45370491 GAGCTTTCCATT-TATGACTCTTAT
1 GAGCTTCCCGTTATATGGCTCACAT
*
45370515 GAGCTTCCCGTTACATGGCTCACAT
1 GAGCTTCCCGTTATATGGCTCACAT
* *
45370540 GAGCTTCCTGTTATATGGCTCGA-AA
1 GAGCTTCCCGTTATATGGCTC-ACAT
*
45370565 GAGCTACCCGTTTATAT-GCTCACAT
1 GAGCTTCCCG-TTATATGGCTCACAT
45370590 GAGCGTTCC
1 GAGC-TTCC
45370599 TGAATATGAA
Statistics
Matches: 120, Mismatches: 27, Indels: 19
0.72 0.16 0.11
Matches are distributed among these distances:
23 1 0.01
24 36 0.30
25 70 0.58
26 13 0.11
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.35
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCACAT
Found at i:45376953 original size:22 final size:22
Alignment explanation
Indices: 45376927--45376971 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
45376917 ATTATATGTA
45376927 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
45376949 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
45376971 T
1 T
45376972 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:45377035 original size:14 final size:14
Alignment explanation
Indices: 45377016--45377042 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45377006 ATGGTCCAAT
45377016 TGAACTGAACCGAG
1 TGAACTGAACCGAG
45377030 TGAACTGAACCGA
1 TGAACTGAACCGA
45377043 CCAAGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:45378612 original size:20 final size:20
Alignment explanation
Indices: 45378587--45378627 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
45378577 CTCAAACCAC
45378587 TTCATAACATTTCATGACCT
1 TTCATAACATTTCATGACCT
45378607 TTCATAACATTTCATGACCT
1 TTCATAACATTTCATGACCT
45378627 T
1 T
45378628 AGAGGTATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.41
Consensus pattern (20 bp):
TTCATAACATTTCATGACCT
Found at i:45381907 original size:12 final size:13
Alignment explanation
Indices: 45381889--45381930 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 13
45381879 AGGAAAGATT
45381889 TAATAATAATATA
1 TAATAATAATATA
45381902 -AATAATAACATATA
1 TAATAAT-A-ATATA
45381916 TACATAATAATATA
1 TA-ATAATAATATA
45381930 T
1 T
45381931 TAAAGTTGAA
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
12 6 0.24
13 1 0.04
14 11 0.44
15 2 0.08
16 5 0.20
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.36
Consensus pattern (13 bp):
TAATAATAATATA
Found at i:45381922 original size:16 final size:16
Alignment explanation
Indices: 45381897--45381934 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
45381887 TTTAATAATA
45381897 ATATAAATAATAACAT
1 ATATAAATAATAACAT
* *
45381913 ATATACATAATAATAT
1 ATATAAATAATAACAT
45381929 AT-TAAA
1 ATATAAA
45381935 GTTGAAGTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (16 bp):
ATATAAATAATAACAT
Found at i:45382190 original size:3 final size:3
Alignment explanation
Indices: 45382173--45382260 Score: 104
Period size: 3 Copynumber: 29.0 Consensus size: 3
45382163 AACTAATATA
* * * * * * *
45382173 AAT AAT AAC ACT AAT AAT AAT AAT AAT AAT AGT AGT AGT AGT AGT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
45382221 AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT
45382261 GGTAGTAGCA
Statistics
Matches: 78, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
3 75 0.96
4 3 0.04
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:45385892 original size:34 final size:34
Alignment explanation
Indices: 45385831--45385921 Score: 87
Period size: 34 Copynumber: 2.6 Consensus size: 34
45385821 TATCAACACA
* * *
45385831 ATAA-GCATCATGATACATCAATATTCAGTCAT-GG
1 ATAACGCATCAT-TTACA-CAACATTCAGCCATAGG
*
45385865 AGTAACTCATCATTTACACAACATTCAGCCATAGG
1 A-TAACGCATCATTTACACAACATTCAGCCATAGG
* *
45385900 ATGACGCATCATTTACTCAACA
1 ATAACGCATCATTTACACAACA
45385922 CGCAACCAAC
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
34 31 0.66
35 10 0.21
36 6 0.13
ACGTcount: A:0.37, C:0.23, G:0.12, T:0.27
Consensus pattern (34 bp):
ATAACGCATCATTTACACAACATTCAGCCATAGG
Found at i:45388488 original size:6 final size:6
Alignment explanation
Indices: 45388472--45388501 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
45388462 AAGTAAGTTC
45388472 CCCCTAT CCCCAT CCCCAT CCCCAT CCCCA
1 CCCC-AT CCCCAT CCCCAT CCCCAT CCCCA
45388502 CCTCCACTCC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 19 0.83
7 4 0.17
ACGTcount: A:0.17, C:0.67, G:0.00, T:0.17
Consensus pattern (6 bp):
CCCCAT
Found at i:45393001 original size:16 final size:16
Alignment explanation
Indices: 45392980--45393029 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 16
45392970 ATATCTAATC
45392980 ATATAATAAATTATT-
1 ATATAATAAATTATTA
45392995 A-AT-ATAAATTATTA
1 ATATAATAAATTATTA
* *
45393009 TTTTAATAAATTATTTA
1 ATATAATAAATTA-TTA
45393026 ATAT
1 ATAT
45393030 TTCAATTTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 6
0.73 0.11 0.16
Matches are distributed among these distances:
13 10 0.37
14 2 0.07
15 2 0.07
16 8 0.30
17 5 0.19
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (16 bp):
ATATAATAAATTATTA
Found at i:45393016 original size:29 final size:30
Alignment explanation
Indices: 45392983--45393048 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
45392973 TCTAATCATA
45392983 TAATAAATTA-TTAATA-TAAATTATTATTT
1 TAATAAATTATTTAATATTAAATT-TTATTT
*
45393012 TAATAAATTATTTAATATTTCAATTTTATTT
1 TAATAAATTATTTAATA-TTAAATTTTATTT
45393043 TAATAA
1 TAATAA
45393049 TAAATATTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
29 10 0.30
30 6 0.18
31 12 0.36
32 5 0.15
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (30 bp):
TAATAAATTATTTAATATTAAATTTTATTT
Found at i:45396963 original size:8 final size:8
Alignment explanation
Indices: 45396950--45396993 Score: 54
Period size: 8 Copynumber: 5.5 Consensus size: 8
45396940 TTTACTTTTC
45396950 ATTTAAAA
1 ATTTAAAA
45396958 ATTTAAAA
1 ATTTAAAA
*
45396966 AATTAAAA
1 ATTTAAAA
*
45396974 AGTTAAAA
1 ATTTAAAA
45396982 A-TTAAATA
1 ATTTAAA-A
45396990 ATTT
1 ATTT
45396994 TCTTTTAAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
7 5 0.16
8 25 0.78
9 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.36
Consensus pattern (8 bp):
ATTTAAAA
Found at i:45397675 original size:2 final size:2
Alignment explanation
Indices: 45397662--45397708 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
45397652 TTCTACATTT
*
45397662 TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
45397704 TC TC T
1 TC TC T
45397709 TTTATTCCCC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:45399548 original size:25 final size:24
Alignment explanation
Indices: 45399507--45399580 Score: 76
Period size: 25 Copynumber: 3.0 Consensus size: 24
45399497 AGCACTCTCT
* *
45399507 CGAGCCATATAATGGGAAGCTCATG
1 CGAG-CATATAACGGGAAGCTCATC
* *
45399532 TGAGTCATATAACGGGAAGCTTATC
1 CGAG-CATATAACGGGAAGCTCATC
*
45399557 CGAGCTTTATAACGGGAAGCTCAT
1 CGAGC-ATATAACGGGAAGCTCAT
45399581 AAGAGCCATA
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
24 1 0.03
25 39 0.98
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (24 bp):
CGAGCATATAACGGGAAGCTCATC
Found at i:45399586 original size:25 final size:25
Alignment explanation
Indices: 45399539--45399586 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
45399529 ATGTGAGTCA
* **
45399539 TATAACGGGAAGCTTATCCGAGCTT
1 TATAACGGGAAGCTCATAAGAGCTT
45399564 TATAACGGGAAGCTCATAAGAGC
1 TATAACGGGAAGCTCATAAGAGC
45399587 CATAATCAGA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.25, T:0.23
Consensus pattern (25 bp):
TATAACGGGAAGCTCATAAGAGCTT
Found at i:45399649 original size:48 final size:48
Alignment explanation
Indices: 45399540--45399649 Score: 109
Period size: 48 Copynumber: 2.3 Consensus size: 48
45399530 TGTGAGTCAT
* * *
45399540 ATAACGGGAAGCTTATCCGAGCTTTATAACGGGAAGCTCATAAGAGCC
1 ATAACGGGAAGCTTATCCAAGCTTAATAACGGGAAGCTCAGAAGAGCC
* * *
45399588 ATAATCAGAAAGCTTATGCAAGC-TAATAACGGGTAA-CTTC-GAAGAGCC
1 ATAA-CGGGAAGCTTATCCAAGCTTAATAACGGG-AAGC-TCAGAAGAGCC
45399636 ATTAACGGGAAGCT
1 A-TAACGGGAAGCT
45399650 CCGAATAGCC
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
48 29 0.58
49 21 0.42
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.21
Consensus pattern (48 bp):
ATAACGGGAAGCTTATCCAAGCTTAATAACGGGAAGCTCAGAAGAGCC
Found at i:45399654 original size:24 final size:24
Alignment explanation
Indices: 45399614--45399770 Score: 90
Period size: 26 Copynumber: 6.3 Consensus size: 24
45399604 TGCAAGCTAA
*
45399614 TAACGGGTAA-CTTCGAAGAGCCAT
1 TAACGGG-AAGCTCCGAAGAGCCAT
*
45399638 TAACGGGAAGCTCCGAATAGCCAT
1 TAACGGGAAGCTCCGAAGAGCCAT
*
45399662 ATATCGGGAAG-TCC-AAGTGAGCCA-
1 -TAACGGGAAGCTCCGAA--GAGCCAT
* * *
45399686 TATCGGGTAGCTCC-AGAGAGCTAT
1 TAACGGGAAGCTCCGA-AGAGCCAT
* *
45399710 TAATCGGGAAGCTCACAAAGAGCCTT
1 TAA-CGGGAAGCTC-CGAAGAGCCAT
* * *
45399736 TAATTGAGAAGCTCACGAAGAACCAT
1 TAA-CGGGAAGCTC-CGAAGAGCCAT
45399762 ATAACGGGA
1 -TAACGGGA
45399771 CGCTTATAAG
Statistics
Matches: 105, Mismatches: 17, Indels: 20
0.74 0.12 0.14
Matches are distributed among these distances:
23 18 0.17
24 28 0.27
25 24 0.23
26 31 0.30
27 4 0.04
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.19
Consensus pattern (24 bp):
TAACGGGAAGCTCCGAAGAGCCAT
Found at i:45399684 original size:25 final size:26
Alignment explanation
Indices: 45399613--45399770 Score: 74
Period size: 25 Copynumber: 6.3 Consensus size: 26
45399603 ATGCAAGCTA
*
45399613 ATAACGGGTAA-CTTCGAA-GAGCCAT
1 ATAACGGG-AAGCTCCGAATGAGCCAT
45399638 -TAACGGGAAGCTCCGAAT-AGCCAT
1 ATAACGGGAAGCTCCGAATGAGCCAT
*
45399662 ATATCGGGAAG-TCC-AAGTGAGCCAT
1 ATAACGGGAAGCTCCGAA-TGAGCCAT
* *
45399687 AT--CGGGTAGCTCC-AGA-GAGCTAT
1 ATAACGGGAAGCTCCGA-ATGAGCCAT
*
45399710 -TAATCGGGAAGCTCAC-AAAGAGCC-T
1 ATAA-CGGGAAGCTC-CGAATGAGCCAT
* * * *
45399735 TTAATTGAGAAGCTCACGAA-GAACCAT
1 ATAA-CGGGAAGCTC-CGAATGAGCCAT
45399762 ATAACGGGA
1 ATAACGGGA
45399771 CGCTTATAAG
Statistics
Matches: 106, Mismatches: 12, Indels: 29
0.72 0.08 0.20
Matches are distributed among these distances:
22 1 0.01
23 16 0.15
24 27 0.25
25 29 0.27
26 27 0.25
27 6 0.06
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (26 bp):
ATAACGGGAAGCTCCGAATGAGCCAT
Found at i:45401677 original size:51 final size:52
Alignment explanation
Indices: 45401601--45401770 Score: 188
Period size: 51 Copynumber: 3.3 Consensus size: 52
45401591 TATGAACACG
*
45401601 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAGATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGATAATGGTCACA
* * * * * *
45401652 TGTGTAGTACTATGTGCAGGCTACTACGTG-AACTGAAAAGCT--TGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GGATAGATAATGGTCACA
* * *
45401702 TGTGTAGTACTATGTGTAGGATACTACGTGTATCGGAT-GACAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGATAATGGTCACA
* *
45401753 TGGGTGGTACTATGTGCA
1 TGTGTAGTACTATGTGCA
45401771 AACCACCGAA
Statistics
Matches: 95, Mismatches: 19, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
49 1 0.01
50 38 0.40
51 52 0.55
52 4 0.04
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (52 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGATAATGGTCACA
Found at i:45408329 original size:23 final size:22
Alignment explanation
Indices: 45408277--45408329 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
45408267 TCCACGTCTT
*
45408277 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
45408299 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
45408322 TTTCTTTT
1 TTTCTTTT
45408330 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:45411321 original size:37 final size:37
Alignment explanation
Indices: 45411280--45411352 Score: 137
Period size: 37 Copynumber: 2.0 Consensus size: 37
45411270 TGCTACGGTC
*
45411280 GACCAAGGGTAGTTAATAACTCATTTTGGGTAAATTT
1 GACCAAGGGTAGTCAATAACTCATTTTGGGTAAATTT
45411317 GACCAAGGGTAGTCAATAACTCATTTTGGGTAAATT
1 GACCAAGGGTAGTCAATAACTCATTTTGGGTAAATT
45411353 CGAGGACAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.33, C:0.12, G:0.22, T:0.33
Consensus pattern (37 bp):
GACCAAGGGTAGTCAATAACTCATTTTGGGTAAATTT
Found at i:45413258 original size:51 final size:49
Alignment explanation
Indices: 45413112--45413298 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 49
45413102 AGTGAAAGTG
* * *
45413112 ATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCGGAATG-
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAATGT
* * * * ***
45413161 ATAGGTCGCATTTGTTGTACTATGTGCAGACTACTATACGTATCGAATAGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-GT
* * * * *
45413212 TTCGATCACGTATGTAGTACCATGTGCAGGCTACTACGTGTATCGAATGGT
1 AT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAAT-GT
45413263 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
45413299 TGTGAACTGA
Statistics
Matches: 106, Mismatches: 28, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
49 6 0.06
50 32 0.30
51 67 0.63
52 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (49 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATGT
Found at i:45413360 original size:45 final size:45
Alignment explanation
Indices: 45413304--45413395 Score: 148
Period size: 45 Copynumber: 2.0 Consensus size: 45
45413294 TACTATGTGA
* *
45413304 ACTGAACATCATTGATTAGTAAAGTGGTTGCTATGTGCTGATTCC
1 ACTGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
* *
45413349 ACTGGACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACTGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
45413394 AC
1 AC
45413396 CGAGTATCTA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (45 bp):
ACTGAACATCATTGATTAATAAAGTGGTTGCTATGTGCTGAATCC
Found at i:45418761 original size:20 final size:22
Alignment explanation
Indices: 45418733--45418777 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
45418723 GAAATTTATA
* *
45418733 TTTCTTTAC-ATTTTATATAAT
1 TTTCTTTACGACTTTATAAAAT
45418754 TTTC-TTACGACTTTATAAAAT
1 TTTCTTTACGACTTTATAAAAT
45418775 TTT
1 TTT
45418778 ATAATTTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.29, C:0.11, G:0.02, T:0.58
Consensus pattern (22 bp):
TTTCTTTACGACTTTATAAAAT
Found at i:45418805 original size:17 final size:17
Alignment explanation
Indices: 45418783--45418825 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
45418773 ATTTTATAAT
*
45418783 TTTTTTATATTTCTATA
1 TTTTTTATATTTCTACA
*
45418800 TTTTTTATATTTTTACA
1 TTTTTTATATTTCTACA
*
45418817 ATTTTTATA
1 TTTTTTATA
45418826 AAATTTTACA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTTTTATATTTCTACA
Found at i:45418810 original size:9 final size:9
Alignment explanation
Indices: 45418774--45418872 Score: 51
Period size: 10 Copynumber: 10.4 Consensus size: 9
45418764 CTTTATAAAA
45418774 TTTTATAATT
1 TTTTAT-ATT
45418784 TTTT-TATAT
1 TTTTATAT-T
*
45418793 TTCTATATT
1 TTTTATATT
45418802 TTTTATA-T
1 TTTTATATT
* *
45418810 TTTTACAAT
1 TTTTATATT
**
45418819 TTTTATAAAA
1 TTTTAT-ATT
*
45418829 TTTTACAATT
1 TTTTA-TATT
45418839 TTTTATATAT
1 TTTTATAT-T
45418849 ATTTT-TATGAT
1 -TTTTATAT--T
45418860 TTTTATATT
1 TTTTATATT
45418869 TTTT
1 TTTT
45418873 TTCTAATTTC
Statistics
Matches: 71, Mismatches: 9, Indels: 19
0.72 0.09 0.19
Matches are distributed among these distances:
8 9 0.13
9 25 0.35
10 28 0.39
11 9 0.13
ACGTcount: A:0.28, C:0.03, G:0.01, T:0.68
Consensus pattern (9 bp):
TTTTATATT
Found at i:45418822 original size:19 final size:19
Alignment explanation
Indices: 45418774--45418853 Score: 74
Period size: 19 Copynumber: 4.2 Consensus size: 19
45418764 CTTTATAAAA
*
45418774 TTTTATAATTTTTTTATAT
1 TTTTACAATTTTTTTATAT
* *
45418793 TTCTA-TA-TTTTTTATAT
1 TTTTACAATTTTTTTATAT
* * *
45418810 TTTTACAATTTTTATAAAA
1 TTTTACAATTTTTTTATAT
45418829 TTTTACAATTTTTTATATAT
1 TTTTACAATTTTTT-TATAT
45418849 ATTTT
1 -TTTT
45418854 TATGATTTTT
Statistics
Matches: 47, Mismatches: 10, Indels: 6
0.75 0.16 0.10
Matches are distributed among these distances:
17 14 0.30
18 2 0.04
19 24 0.51
20 3 0.06
21 4 0.09
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.66
Consensus pattern (19 bp):
TTTTACAATTTTTTTATAT
Found at i:45419936 original size:20 final size:19
Alignment explanation
Indices: 45419907--45419946 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
45419897 CATTAGCTTA
*
45419907 ATTAATTTAAGTTTTAATTT
1 ATTAAATTAAG-TTTAATTT
45419927 ATTAAATTAAGTTTAATTT
1 ATTAAATTAAGTTTAATTT
45419946 A
1 A
45419947 AAACTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.40, C:0.00, G:0.05, T:0.55
Consensus pattern (19 bp):
ATTAAATTAAGTTTAATTT
Found at i:45431048 original size:26 final size:26
Alignment explanation
Indices: 45431013--45431073 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
45431003 GTAGCTCTTA
* *
45431013 TGAGCGTCCC-ATTATATGGCTCTTCG
1 TGAGCTTCCCGATTA-AAGGCTCTTCG
*
45431039 TGAGCTTCCCGATTAAAGGCTCTTTG
1 TGAGCTTCCCGATTAAAGGCTCTTCG
*
45431065 TGAGATTCC
1 TGAGCTTCC
45431074 TGTTAGTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (26 bp):
TGAGCTTCCCGATTAAAGGCTCTTCG
Found at i:45431166 original size:24 final size:24
Alignment explanation
Indices: 45431116--45431177 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
45431106 GCTATCAAGT
45431116 GCTACCCGTTAATTGCTCTTCAGA
1 GCTACCCGTTAATTGCTCTTCAGA
** **
45431140 GCTATTCGTTAATTGCT-TTTTGAA
1 GCTACCCGTTAATTGCTCTTCAG-A
45431164 GCTACCCGTTAATT
1 GCTACCCGTTAATT
45431178 AGTCTTTGGA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
23 3 0.10
24 28 0.90
ACGTcount: A:0.21, C:0.23, G:0.16, T:0.40
Consensus pattern (24 bp):
GCTACCCGTTAATTGCTCTTCAGA
Found at i:45431185 original size:24 final size:23
Alignment explanation
Indices: 45431116--45431198 Score: 69
Period size: 24 Copynumber: 3.5 Consensus size: 23
45431106 GCTATCAAGT
*
45431116 GCTACCCGTTAATTG-CTCTTCAGA
1 GCTACCCGTTAATTGTCT-TTGA-A
** *
45431140 GCTATTCGTTAATTGCTTTTTGAA
1 GCTACCCGTTAATTG-TCTTTGAA
*
45431164 GCTACCCGTTAATTAGTCTTTGGA
1 GCTACCCGTTAATT-GTCTTTGAA
*
45431188 GCTACCTGTTA
1 GCTACCCGTTA
45431199 TAGGCTCTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 6
0.76 0.15 0.10
Matches are distributed among these distances:
24 42 0.89
25 4 0.09
26 1 0.02
ACGTcount: A:0.20, C:0.22, G:0.18, T:0.40
Consensus pattern (23 bp):
GCTACCCGTTAATTGTCTTTGAA
Found at i:45435002 original size:12 final size:12
Alignment explanation
Indices: 45434985--45435037 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
45434975 TCGAATAAGC
45434985 ATGTATATATAT
1 ATGTATATATAT
45434997 ATGTATATATAT
1 ATGTATATATAT
*
45435009 AATGCTAGAATATAT
1 -ATG-TA-TATATAT
**
45435024 ATACATATATAT
1 ATGTATATATAT
45435036 AT
1 AT
45435038 AAAAGTTATC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 20 0.59
13 4 0.12
14 4 0.12
15 6 0.18
ACGTcount: A:0.45, C:0.04, G:0.08, T:0.43
Consensus pattern (12 bp):
ATGTATATATAT
Found at i:45435713 original size:41 final size:41
Alignment explanation
Indices: 45435668--45435818 Score: 223
Period size: 41 Copynumber: 3.7 Consensus size: 41
45435658 AGGCTAAGCG
*
45435668 CCTAGCAGGCTTA-ATGCCGGTGATCTGAATCAGGTTATAAA
1 CCTAGCAGGC-TACGTGCCGGTGATCTGAATCAGGTTATAAA
45435709 CCTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAA
1 CCTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAA
* *
45435750 CCTAGCAGGCTACGTGCCGGTGATCTGAATCAGGCTATAAG
1 CCTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAA
* * *
45435791 TCTAGCAGGCTATGTGCCGTTGAATCTG
1 CCTAGCAGGCTACGTGCCGGTG-ATCTG
45435819 TTTTAATTAA
Statistics
Matches: 102, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
40 2 0.02
41 95 0.93
42 5 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (41 bp):
CCTAGCAGGCTACGTGCCGGTGATCTGAATCAGGTTATAAA
Found at i:45438249 original size:24 final size:25
Alignment explanation
Indices: 45438220--45438273 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 25
45438210 ATTTCTCTCC
* * *
45438220 AAAAACGGCCTATTTGGCTAA-TTA
1 AAAAACGACATATTTAGCTAATTTA
*
45438244 AAAAACGACATATTTATCTAATTTA
1 AAAAACGACATATTTAGCTAATTTA
45438269 AAAAA
1 AAAAA
45438274 TTGTAAATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
24 17 0.68
25 8 0.32
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.30
Consensus pattern (25 bp):
AAAAACGACATATTTAGCTAATTTA
Found at i:45438868 original size:16 final size:16
Alignment explanation
Indices: 45438834--45438867 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
45438824 TTGTAGGAGG
*
45438834 AAAGGAGAAAGAAAGA
1 AAAGGAAAAAGAAAGA
45438850 AAAGGAAAAAG-AAGA
1 AAAGGAAAAAGAAAGA
45438865 AAA
1 AAA
45438868 AAAAAGGAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (16 bp):
AAAGGAAAAAGAAAGA
Found at i:45447221 original size:24 final size:24
Alignment explanation
Indices: 45447193--45447244 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
45447183 TTAGTAGGTC
* *
45447193 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
*
45447217 AAATATATTATACTAATAAATACT
1 AAATAAATTATACTAATAAATACT
45447241 AAAT
1 AAAT
45447245 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.35
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:45449400 original size:50 final size:50
Alignment explanation
Indices: 45449342--45449520 Score: 250
Period size: 50 Copynumber: 3.6 Consensus size: 50
45449332 ATTTGGGTAA
*
45449342 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
45449392 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
* ** * * * *
45449442 AGCGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
** * *
45449492 AGAACTCTCATGTAAGACCATATCTGGGA
1 AGAGGTCCCATGTAAGACCATGTCTGGGA
45449521 TATCGCATTG
Statistics
Matches: 114, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 114 1.00
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
Found at i:45451484 original size:24 final size:24
Alignment explanation
Indices: 45451457--45451509 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
45451447 TTAGTAGGTC
* *
45451457 AAATAAACTATTCTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
45451481 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
45451505 AAATA
1 AAATA
45451510 TTATAGAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.09, G:0.02, T:0.34
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:45453737 original size:51 final size:50
Alignment explanation
Indices: 45453661--45453847 Score: 225
Period size: 51 Copynumber: 3.7 Consensus size: 50
45453651 CATGAGAACT
* * * *
45453661 CATGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTAT-GGATAGTTATGGTCA
*
45453712 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTGGATAGCTT-TGATCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTA-TGGATAG-TTATGGTCA
* * * *
45453763 CATGTGTAGTACTATGTGCAGGCTACTACGTGTGCTGGAT-GGTATTGGTCA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGT-ATGGATAGTTA-TGGTCA
*
45453814 CATGTGTAGTACTAAGTGTAGGCTACTATGTGTA
1 CATGTGTAGTACTAAGTGCAGGCTACTATGTGTA
45453848 CCGGATAGCA
Statistics
Matches: 117, Mismatches: 14, Indels: 11
0.82 0.10 0.08
Matches are distributed among these distances:
49 1 0.01
50 1 0.01
51 112 0.96
52 3 0.03
ACGTcount: A:0.25, C:0.13, G:0.27, T:0.34
Consensus pattern (50 bp):
CATGTGTAGTACTAAGTGCAGGCTACTATGTGTATGGATAGTTATGGTCA
Found at i:45453837 original size:102 final size:102
Alignment explanation
Indices: 45453661--45453864 Score: 295
Period size: 102 Copynumber: 2.0 Consensus size: 102
45453651 CATGAGAACT
* *
45453661 CATGTGTAGTACTATGTGTAGGCTACTATGAGTATAAGATAGTTATGGTCACATGTGTAGTACTA
1 CATGTGTAGTACTATGTGCAGGCTACTACGAGTATAAGATAGTTATGGTCACATGTGTAGTACTA
* *
45453726 AGTGCAGGCTACTATGTGTACTGGATAGCTTTGATCA
66 AGTGCAGGCTACTATGTGTACCGGATAGCATTGATCA
* * * *
45453763 CATGTGTAGTACTATGTGCAGGCTACTACGTGTGCT-GGAT-GGTATTGGTCACATGTGTAGTAC
1 CATGTGTAGTACTATGTGCAGGCTACTACGAGT-ATAAGATAGTTA-TGGTCACATGTGTAGTAC
*
45453826 TAAGTGTAGGCTACTATGTGTACCGGATAGCATTGATCA
64 TAAGTGCAGGCTACTATGTGTACCGGATAGCATTGATCA
45453865 TAAGGGTGGT
Statistics
Matches: 91, Mismatches: 9, Indels: 4
0.88 0.09 0.04
Matches are distributed among these distances:
101 3 0.03
102 87 0.96
103 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.33
Consensus pattern (102 bp):
CATGTGTAGTACTATGTGCAGGCTACTACGAGTATAAGATAGTTATGGTCACATGTGTAGTACTA
AGTGCAGGCTACTATGTGTACCGGATAGCATTGATCA
Found at i:45457590 original size:16 final size:16
Alignment explanation
Indices: 45457566--45457597 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
45457556 ATGTTATAAA
45457566 GTTTGGACTAGAAATG
1 GTTTGGACTAGAAATG
*
45457582 GTTTTGACTAGAAATG
1 GTTTGGACTAGAAATG
45457598 AAATAAGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.34
Consensus pattern (16 bp):
GTTTGGACTAGAAATG
Found at i:45466180 original size:25 final size:25
Alignment explanation
Indices: 45466151--45466200 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
45466141 TGATACTACA
45466151 TATTTAAATACATTTAGGGACATAG
1 TATTTAAATACATTTAGGGACATAG
*
45466176 TATTTAAATACATTTAGTGACATAG
1 TATTTAAATACATTTAGGGACATAG
45466201 ATATGAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.40, C:0.08, G:0.14, T:0.38
Consensus pattern (25 bp):
TATTTAAATACATTTAGGGACATAG
Found at i:45471431 original size:58 final size:58
Alignment explanation
Indices: 45471345--45471493 Score: 163
Period size: 58 Copynumber: 2.6 Consensus size: 58
45471335 AGGTAGGTAA
* * ** * ** *
45471345 CATAAGATCGTGGATGAAAGACATCATGGTAGCATGGTACATGGTAAAAGGTATATGG
1 CATAAGACCATGGATGAAAGACGCCATGGTAGCATAGTACAAAGTAAAAGGTATACGG
* * *
45471403 CATAAGACCATGGATGAAAGACGCCATGGTTGTATAGTACAAAGTATAAGGTATACGG
1 CATAAGACCATGGATGAAAGACGCCATGGTAGCATAGTACAAAGTAAAAGGTATACGG
** * *
45471461 TGTAAGACCATAGATGAAAGACGCTATGGTAGC
1 CATAAGACCATGGATGAAAGACGCCATGGTAGC
45471494 CAGGTATGAT
Statistics
Matches: 74, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
58 74 1.00
ACGTcount: A:0.37, C:0.13, G:0.28, T:0.23
Consensus pattern (58 bp):
CATAAGACCATGGATGAAAGACGCCATGGTAGCATAGTACAAAGTAAAAGGTATACGG
Found at i:45471611 original size:33 final size:33
Alignment explanation
Indices: 45471557--45471640 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
45471547 AGCCCACTGT
* * *
45471557 GACAATTAACATAGAACAAAGATAGTCCGTTGG
1 GACAATAAACATAGAACAAAGAAAGTCCGGTGG
* * * *
45471590 GATAGTAAACACAGAACAAAGAAAGTTCGGTGG
1 GACAATAAACATAGAACAAAGAAAGTCCGGTGG
45471623 GACAATAAACATAGAACA
1 GACAATAAACATAGAACA
45471641 GGCAGTCTGC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.48, C:0.14, G:0.21, T:0.17
Consensus pattern (33 bp):
GACAATAAACATAGAACAAAGAAAGTCCGGTGG
Found at i:45476089 original size:27 final size:27
Alignment explanation
Indices: 45476059--45476140 Score: 83
Period size: 27 Copynumber: 3.0 Consensus size: 27
45476049 ACAGTTCGTT
*
45476059 GGGACAGTAAACACAGGTAAGTCCTCC
1 GGGACAGTAAACACAGGTAAGTCCGCC
* ** *
45476086 GGGACAGTGAACATGGGTAAGTCCGCT
1 GGGACAGTAAACACAGGTAAGTCCGCC
* * *
45476113 GAGACAATAAACATGAGGTAAGTCCGCC
1 GGGACAGTAAACA-CAGGTAAGTCCGCC
45476141 AGAACGTGAG
Statistics
Matches: 43, Mismatches: 11, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
27 32 0.74
28 11 0.26
ACGTcount: A:0.33, C:0.22, G:0.29, T:0.16
Consensus pattern (27 bp):
GGGACAGTAAACACAGGTAAGTCCGCC
Found at i:45476692 original size:25 final size:25
Alignment explanation
Indices: 45476657--45476705 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
45476647 AGTTGTAAAT
*
45476657 AAAAAATATCTTTAGA-AATTTTCA
1 AAAAAATATCTTCAGAGAATTTTCA
45476681 AAAATAATATCTTCAGAGAATTTTC
1 AAAA-AATATCTTCAGAGAATTTTC
45476706 TCTTTACAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.18
25 11 0.50
26 7 0.32
ACGTcount: A:0.47, C:0.10, G:0.06, T:0.37
Consensus pattern (25 bp):
AAAAAATATCTTCAGAGAATTTTCA
Found at i:45476883 original size:59 final size:61
Alignment explanation
Indices: 45476818--45476934 Score: 175
Period size: 62 Copynumber: 1.9 Consensus size: 61
45476808 TCACTTTAAC
* * *
45476818 ATTAAATTAATATAATATTTA-T-CAAGATAAATATTAGATTAAATTTAATATTAAATCTT
1 ATTAAATTAATAGAATATTTACTACAAGATAAACATTAAATTAAATTTAATATTAAATCTT
*
45476877 ATTAAATTAATAGAATATTTATCTACAAGATAGACATTAAATTAAATTTAATATTAAA
1 ATTAAATTAATAGAATATTTA-CTACAAGATAAACATTAAATTAAATTTAATATTAAA
45476935 ATAATAACTT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
59 20 0.39
61 1 0.02
62 30 0.59
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.41
Consensus pattern (61 bp):
ATTAAATTAATAGAATATTTACTACAAGATAAACATTAAATTAAATTTAATATTAAATCTT
Found at i:45477016 original size:20 final size:18
Alignment explanation
Indices: 45476912--45477020 Score: 71
Period size: 20 Copynumber: 5.8 Consensus size: 18
45476902 CAAGATAGAC
* *
45476912 ATTAAATTAA-ATTTAAT
1 ATTAAAATAATATTAAAT
45476929 ATTAAAATAATAACTTAAAT
1 ATTAAAATAAT-A-TTAAAT
* *
45476949 ATTAAATTAATA-AAATACT
1 ATTAAAATAATATTAA-A-T
*
45476968 ATTAATATAAGTATTAAAT
1 ATTAAAATAA-TATTAAAT
**
45476987 -TTAATTTAATATTAAATCT
1 ATTAAAATAATATTAAA--T
45477006 ATTAAAATAATATTA
1 ATTAAAATAATATTA
45477021 TTTTTGGAAT
Statistics
Matches: 72, Mismatches: 10, Indels: 17
0.73 0.10 0.17
Matches are distributed among these distances:
17 18 0.25
18 9 0.12
19 13 0.18
20 30 0.42
21 2 0.03
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (18 bp):
ATTAAAATAATATTAAAT
Found at i:45478337 original size:127 final size:127
Alignment explanation
Indices: 45478111--45478471 Score: 470
Period size: 127 Copynumber: 2.7 Consensus size: 127
45478101 CACCATACAC
* *
45478111 AAGTCATGTACCCAGCGTACCGACTATCAGCTTGATCATCTTTAGAGCATAAGCCTCCACTTATT
1 AAGTCATGTACCCAACGTACCGACTATCAGCTTGATCATCTTTAAAGCATAAGCCTCCACTTATT
* *
45478176 TCAAAGCACATGAGTTACATACGCATAGTCTAATTGAGCTATGAATTCCACTGTTTCTAGTA
66 TCAAAACACATGAGTTACATACGCATAGTCTAATTGAGCTATGAATTCCACTGTTGCTAGTA
* **
45478238 AAGTCATGTACCCAACGTACCGATTATTGGCTTGATCATCTTTAAAGCATAAGCCTCCACTTATT
1 AAGTCATGTACCCAACGTACCGACTATCAGCTTGATCATCTTTAAAGCATAAGCCTCCACTTATT
* *
45478303 TCAAAACACGTGAGTTACATACGCATGGTCTAATTGAGCTATGAATTCCACTGTTGCTAGTAAAG
66 TCAAAACACATGAGTTACATACGCATAGTCTAATTGAGCTATGAATTCCACTGTTGC--------
45478368 TCATGCCATACA
123 T-A-G---T--A
* *
45478380 CAAGTCATGTACCCAACGTACCGACTATCAGTTTGATCATCTTTAGAGCATAAGCCTCCACTTAT
1 -AAGTCATGTACCCAACGTACCGACTATCAGCTTGATCATCTTTAAAGCATAAGCCTCCACTTAT
*
45478445 TTCAAAGCACATGAGTTACATACGCAT
65 TTCAAAACACATGAGTTACATACGCAT
45478472 GGCCAGTGAC
Statistics
Matches: 202, Mismatches: 16, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
127 113 0.56
135 1 0.00
136 1 0.00
137 1 0.00
140 1 0.00
142 1 0.00
143 84 0.42
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.30
Consensus pattern (127 bp):
AAGTCATGTACCCAACGTACCGACTATCAGCTTGATCATCTTTAAAGCATAAGCCTCCACTTATT
TCAAAACACATGAGTTACATACGCATAGTCTAATTGAGCTATGAATTCCACTGTTGCTAGTA
Found at i:45481162 original size:29 final size:28
Alignment explanation
Indices: 45481115--45481193 Score: 72
Period size: 29 Copynumber: 2.8 Consensus size: 28
45481105 TATTAAAAAT
* *
45481115 ATTAAAAAAAATAT-GAAAATAGACAT-A
1 ATTATAAAAAATATAAAAAATAGA-ATAA
* **
45481142 ATTTTATAAAAATATAAAAAATCTAATAA
1 ATTATA-AAAAATATAAAAAATAGAATAA
45481171 ATTATAAAAAATTATAAAAAATA
1 ATTATAAAAAA-TATAAAAAATA
45481194 AAATTAATAA
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
27 4 0.10
28 15 0.37
29 22 0.54
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (28 bp):
ATTATAAAAAATATAAAAAATAGAATAA
Found at i:45481184 original size:10 final size:10
Alignment explanation
Indices: 45481145--45481192 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
45481135 AGACATAATT
45481145 TTAT-AAAAA
1 TTATAAAAAA
45481154 -TATAAAAAA
1 TTATAAAAAA
* *
45481163 -TCTAATAAA
1 TTATAAAAAA
45481172 TTATAAAAAA
1 TTATAAAAAA
45481182 TTATAAAAAA
1 TTATAAAAAA
45481192 T
1 T
45481193 AAAATTAATA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
8 3 0.09
9 12 0.36
10 18 0.55
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (10 bp):
TTATAAAAAA
Found at i:45481295 original size:9 final size:9
Alignment explanation
Indices: 45481145--45481295 Score: 55
Period size: 9 Copynumber: 16.0 Consensus size: 9
45481135 AGACATAATT
45481145 TTATAAAAA
1 TTATAAAAA
45481154 -TATAAAAA
1 TTATAAAAA
* *
45481162 ATCTAATAAA
1 TTATAA-AAA
45481172 TTATAAAAAA
1 TTAT-AAAAA
45481182 TTATAAAAA
1 TTATAAAAA
45481191 --AT-AAAA
1 TTATAAAAA
45481197 TTAATAAAACA
1 TT-ATAAAA-A
45481208 -TATTCAAAATA
1 TTA-T-AAAA-A
*
45481219 TT-TAAAATT
1 TTATAAAA-A
45481228 TTATAAAAA
1 TTATAAAAA
* *
45481237 CGTATTAAAAT
1 -TTA-TAAAAA
45481248 TCTATAAAAA
1 T-TATAAAAA
*
45481258 TGA-ATAAAA
1 TTATA-AAAA
*
45481267 TTGATATAAAC
1 TT-ATA-AAAA
*
45481278 TTATGAAAA
1 TTATAAAAA
45481287 TTATAAAAA
1 TTATAAAAA
45481296 AAGTCATAAA
Statistics
Matches: 108, Mismatches: 16, Indels: 36
0.68 0.10 0.22
Matches are distributed among these distances:
6 4 0.04
7 2 0.02
8 9 0.08
9 36 0.33
10 34 0.31
11 22 0.20
12 1 0.01
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.32
Consensus pattern (9 bp):
TTATAAAAA
Found at i:45481730 original size:19 final size:20
Alignment explanation
Indices: 45481706--45481745 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
45481696 ATTTTTTTTG
*
45481706 TAATTTTTATAGTTT-ATAT
1 TAATTTTAATAGTTTAATAT
*
45481725 TAATTTTAATATTTTAATAT
1 TAATTTTAATAGTTTAATAT
45481745 T
1 T
45481746 TCTTTACAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (20 bp):
TAATTTTAATAGTTTAATAT
Found at i:45481836 original size:19 final size:18
Alignment explanation
Indices: 45481812--45481872 Score: 52
Period size: 19 Copynumber: 3.3 Consensus size: 18
45481802 GTTCTATTAA
*
45481812 TTTTATAATTTATTAGATT
1 TTTTATAATTT-TTACATT
* *
45481831 TTTTAT-ATTTTTATAAT
1 TTTTATAATTTTTACATT
*
45481848 ATTTATAATTTTTTACCATT
1 TTTTATAA-TTTTTA-CATT
45481868 TTTTA
1 TTTTA
45481873 AGGTTAATAA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
17 10 0.30
18 5 0.15
19 12 0.36
20 6 0.18
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.66
Consensus pattern (18 bp):
TTTTATAATTTTTACATT
Found at i:45497585 original size:4 final size:4
Alignment explanation
Indices: 45497578--45497611 Score: 52
Period size: 4 Copynumber: 8.5 Consensus size: 4
45497568 AATAAATAAA
45497578 TATT TATT TATT TATT TATT TCATT T-TT TATT TA
1 TATT TATT TATT TATT TATT T-ATT TATT TATT TA
45497612 CATATACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.11
4 21 0.75
5 4 0.14
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Found at i:45498917 original size:24 final size:24
Alignment explanation
Indices: 45498890--45498949 Score: 61
Period size: 24 Copynumber: 2.5 Consensus size: 24
45498880 AAAGAGATAT
45498890 ATATGTATATAACTATAAATTA-AA
1 ATATGTATATAAC-ATAAATTACAA
* *
45498914 ATATGTGTGTATACATAAATTACAA
1 ATATGTATATA-ACATAAATTACAA
*
45498939 AT-TATATATAA
1 ATATGTATATAA
45498950 AGTATATTTT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
23 1 0.03
24 22 0.76
25 6 0.21
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (24 bp):
ATATGTATATAACATAAATTACAA
Found at i:45499000 original size:18 final size:18
Alignment explanation
Indices: 45498979--45499013 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
45498969 AGAAAGAAAG
*
45498979 AAATATGTATATATATAA
1 AAATATGTACATATATAA
*
45498997 AAATGTGTACATATATA
1 AAATATGTACATATATA
45499014 TATAGGTGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.03, G:0.09, T:0.37
Consensus pattern (18 bp):
AAATATGTACATATATAA
Found at i:45499408 original size:3 final size:3
Alignment explanation
Indices: 45499402--45499437 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
45499392 AAAGATAATG
45499402 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
45499438 GACTAGATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:45502223 original size:23 final size:23
Alignment explanation
Indices: 45502154--45503202 Score: 770
Period size: 23 Copynumber: 44.8 Consensus size: 23
45502144 TATACATCAG
45502154 AAATT-GAGCAGCATGTATATATC-
1 AAATTGGA-CAGCATGTATATA-CA
* * *
45502177 AATTTGGACATCACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
* *
45502200 AAATTTGAAAGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
*
45502223 AAATTGGACAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* * *
45502247 AAATTGGGCAGCATATATATACC
1 AAATTGGACAGCATGTATATACA
* *
45502270 AATTTGGACAGCACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
*
45502293 AAATTTGACAGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
* *
45502316 AAATTGGACAACATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* * *
45502340 AAATTGGGCAGCATATATATATA
1 AAATTGGACAGCATGTATATACA
* *
45502363 TATCAATTTGGATAGCACT-TATACACA
1 -A--AA-TTGGACAGCA-TGTATATACA
* *
45502390 AAATTTGACGGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
* *
45502413 AAATTGGATAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* *
45502437 AAATTGGACAGCATATATGTAGC-
1 AAATTGGACAGCATGTATATA-CA
*
45502460 AAATTGGACAGCACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
*
45502483 AAATTTGACAGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
*
45502506 AAATTGGACAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* * *
45502530 AAATTGGGCAGCATATATATACC
1 AAATTGGACAGCATGTATATACA
* *
45502553 AATTTGGACAGCACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
45502576 AAATTGGACAGCATGTATATAC-
1 AAATTGGACAGCATGTATATACA
*
45502598 AAATTGGACAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* * *
45502622 AAATTGGGCAGCATATATATACC
1 AAATTGGACAGCATGTATATACA
* *
45502645 AATTTGGACAGCACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
*
45502668 AAATTTGACAGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
* *
45502691 AAATTGGACAACATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* * *
45502715 AAATTGGGCAGCATATATATATA
1 AAATTGGACAGCATGTATATACA
* *
45502738 TATCAATTTGGATAGCACT-TATACACA
1 -A--AA-TTGGACAGCA-TGTATATACA
* *
45502765 AAATTTGACGGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
* *
45502788 AAATTGGATAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* *
45502812 AAATTGGACAGCATATATGTAGC-
1 AAATTGGACAGCATGTATATA-CA
*
45502835 AAATTGGACAGCACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
*
45502858 AAATTTGACAGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
*
45502881 AAATTGGACAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* * *
45502905 AAATTGGGCAGCATATATATACC
1 AAATTGGACAGCATGTATATACA
* *
45502928 AATTTGGACAGCACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
45502951 AAATTGGACAGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
*
45502974 AAATTGGACAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* * *
45502998 AAATTGGGCAGCATATATATACC
1 AAATTGGACAGCATGTATATACA
* * *
45503021 AATTTGGACAACACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
45503044 AAATTGGACAGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
*
45503067 AAATTGGACAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* *
45503091 AAATTAGG-CAGCATATATGTAGC-
1 AAATT-GGACAGCATGTATATA-CA
* *
45503114 AATTTGGACAGCACT-TATACACA
1 AAATTGGACAGCA-TGTATATACA
* *
45503137 AAATTTGATAGCATGTATATACA
1 AAATTGGACAGCATGTATATACA
*
45503160 AAATTGGACAGCATTTAT-TCACCA
1 AAATTGGACAGCATGTATAT-A-CA
* *
45503184 AAATTGGGCAGCATATATA
1 AAATTGGACAGCATGTATA
45503203 AACCAATTTT
Statistics
Matches: 822, Mismatches: 133, Indels: 140
0.75 0.12 0.13
Matches are distributed among these distances:
21 1 0.00
22 45 0.05
23 506 0.62
24 222 0.27
25 12 0.01
26 6 0.01
27 28 0.03
28 2 0.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (23 bp):
AAATTGGACAGCATGTATATACA
Found at i:45502266 original size:93 final size:93
Alignment explanation
Indices: 45502132--45503211 Score: 1750
Period size: 93 Copynumber: 11.5 Consensus size: 93
45502122 TCTACCCTGT
* * * * * *
45502132 TTGGACAGC-TCTTATACATCAGAAATTGAGCAGCATGTATATATCAATTTGGACATCACTTATA
1 TTGGACAGCAT-TTATTCACCA-AAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATA
*
45502196 CACAAAATTTGAAAGCATGTATATACAAAA
64 CACAAAATTTGACAGCATGTATATACAAAA
45502226 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
45502291 CAAAATTTGACAGCATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
* * *
45502319 TTGGACAACATTTATTCACCAAAATTGGGCAGCATATATATATATATCAATTTGGATAGCACTTA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGC----ATATATATACCAATTTGGACAGCACTTA
*
45502384 TACACAAAATTTGACGGCATGTATATACAAAA
62 TACACAAAATTTGACAGCATGTATATACAAAA
* * * * *
45502416 TTGGATAGCATTTATTCACCAAAATTGGACAGCATATATGTAGCAAATTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
45502481 CAAAATTTGACAGCATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
45502509 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
*
45502574 CAAAATTGGACAGCATGTATATAC-AAA
66 CAAAATTTGACAGCATGTATATACAAAA
45502601 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
45502666 CAAAATTTGACAGCATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
* * *
45502694 TTGGACAACATTTATTCACCAAAATTGGGCAGCATATATATATATATCAATTTGGATAGCACTTA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGC----ATATATATACCAATTTGGACAGCACTTA
*
45502759 TACACAAAATTTGACGGCATGTATATACAAAA
62 TACACAAAATTTGACAGCATGTATATACAAAA
* * * * *
45502791 TTGGATAGCATTTATTCACCAAAATTGGACAGCATATATGTAGCAAATTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
45502856 CAAAATTTGACAGCATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
45502884 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
*
45502949 CAAAATTGGACAGCATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
*
45502977 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAACACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
*
45503042 CAAAATTGGACAGCATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
* * *
45503070 TTGGACAGCATTTATTCACCAAAATTAGGCAGCATATATGTAGCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
*
45503135 CAAAATTTGATAGCATGTATATACAAAA
66 CAAAATTTGACAGCATGTATATACAAAA
*
45503163 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATAAACCAATTT
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTT
45503212 TAGACCATTA
Statistics
Matches: 921, Mismatches: 55, Indels: 21
0.92 0.06 0.02
Matches are distributed among these distances:
92 91 0.10
93 638 0.69
94 17 0.02
95 1 0.00
97 174 0.19
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (93 bp):
TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
CAAAATTTGACAGCATGTATATACAAAA
Found at i:45502852 original size:375 final size:376
Alignment explanation
Indices: 45502132--45503201 Score: 1909
Period size: 375 Copynumber: 2.9 Consensus size: 376
45502122 TCTACCCTGT
* * * * * *
45502132 TTGGACAGC-TCTTATACATCAGAAATTGAGCAGCATGTATATATCAATTTGGACATCACTTATA
1 TTGGACAGCAT-TTATTCACCA-AAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATA
* *
45502196 CACAAAATTTGAAAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCAT
64 CACAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCAT
45502261 ATATATACCAATTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACA
129 ATATATACCAATTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACA
45502326 ACATTTATTCACCAAAATTGGGCAGCATATATATATATATCAATTTGGATAGCACTTATACACAA
194 ACATTTATTCACCAAAATTGGGCAGCATATATATATATATCAATTTGGATAGCACTTATACACAA
45502391 AATTTGACGGCATGTATATACAAAATTGGATAGCATTTATTCACCAAAATTGGACAGCATATATG
259 AATTTGACGGCATGTATATACAAAATTGGATAGCATTTATTCACCAAAATTGGACAGCATATATG
45502456 TAGCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
324 TAGCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
45502509 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
45502574 CAAAATTGGACAGCATGTATATAC-AAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
66 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
45502638 ATATACCAATTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAAC
131 ATATACCAATTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAAC
45502703 ATTTATTCACCAAAATTGGGCAGCATATATATATATATCAATTTGGATAGCACTTATACACAAAA
196 ATTTATTCACCAAAATTGGGCAGCATATATATATATATCAATTTGGATAGCACTTATACACAAAA
45502768 TTTGACGGCATGTATATACAAAATTGGATAGCATTTATTCACCAAAATTGGACAGCATATATGTA
261 TTTGACGGCATGTATATACAAAATTGGATAGCATTTATTCACCAAAATTGGACAGCATATATGTA
45502833 GCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
326 GCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
45502884 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
1 TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
45502949 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
66 CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
* * *
45503014 ATATACCAATTTGGACAACACTTATACACAAAATTGGACAGCATGTATATACAAAATTGGACAGC
131 ATATACCAATTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAAC
* * * *
45503079 ATTTATTCACCAAAATTAGGCAGC----ATATATGTAGCAATTTGGACAGCACTTATACACAAAA
196 ATTTATTCACCAAAATTGGGCAGCATATATATATATATCAATTTGGATAGCACTTATACACAAAA
** * *
45503140 TTTGATAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATATAT
261 TTTGACGGCATGTATATACAAAATTGGATAGCATTTATTCACCAAAATTGGACAGCATATAT
45503202 AAACCAATTT
Statistics
Matches: 672, Mismatches: 19, Indels: 9
0.96 0.03 0.01
Matches are distributed among these distances:
372 92 0.14
375 375 0.56
376 187 0.28
377 17 0.03
378 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (376 bp):
TTGGACAGCATTTATTCACCAAAATTGGGCAGCATATATATACCAATTTGGACAGCACTTATACA
CAAAATTGGACAGCATGTATATACAAAATTGGACAGCATTTATTCACCAAAATTGGGCAGCATAT
ATATACCAATTTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAATTGGACAAC
ATTTATTCACCAAAATTGGGCAGCATATATATATATATCAATTTGGATAGCACTTATACACAAAA
TTTGACGGCATGTATATACAAAATTGGATAGCATTTATTCACCAAAATTGGACAGCATATATGTA
GCAAATTGGACAGCACTTATACACAAAATTTGACAGCATGTATATACAAAA
Found at i:45503942 original size:28 final size:28
Alignment explanation
Indices: 45503910--45504029 Score: 101
Period size: 28 Copynumber: 4.3 Consensus size: 28
45503900 AAGTTCGTAG
45503910 ACTTAGTG-TTCAATAATCAAACTCGCAC
1 ACTTAGTGCTTCAATAAT-AAACTCGCAC
*
45503938 ACTTAGTGCTTTGCCAT--TAAACTCGCAC
1 ACTTAGTGC-TT-CAATAATAAACTCGCAC
45503966 ACTTAGTGCTTTACAAT--TAAACTCGCAC
1 ACTTAGTGC-TT-CAATAATAAACTCGCAC
* *
45503994 ACTTAGTGCTTTACAAT--TAAATTCACAC
1 ACTTAGTGC-TT-CAATAATAAACTCGCAC
45504022 ACTTAGTG
1 ACTTAGTG
45504030 TCGAAAGTCA
Statistics
Matches: 84, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
28 78 0.93
29 1 0.01
30 2 0.02
31 3 0.04
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.33
Consensus pattern (28 bp):
ACTTAGTGCTTCAATAATAAACTCGCAC
Found at i:45516777 original size:32 final size:33
Alignment explanation
Indices: 45516732--45516797 Score: 125
Period size: 32 Copynumber: 2.0 Consensus size: 33
45516722 CGTCTAATTT
45516732 CCCTTCCCCATTTCCTCCCAACCCTATCTGCGC
1 CCCTTCCCCATTTCCTCCCAACCCTATCTGCGC
45516765 CCCTT-CCCATTTCCTCCCAACCCTATCTGCGC
1 CCCTTCCCCATTTCCTCCCAACCCTATCTGCGC
45516797 C
1 C
45516798 GTACCATCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
32 28 0.85
33 5 0.15
ACGTcount: A:0.12, C:0.55, G:0.06, T:0.27
Consensus pattern (33 bp):
CCCTTCCCCATTTCCTCCCAACCCTATCTGCGC
Found at i:45521940 original size:11 final size:11
Alignment explanation
Indices: 45521924--45521950 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
45521914 TAGAAATTAG
45521924 TTTGTGAAACT
1 TTTGTGAAACT
45521935 TTTGTGAAACT
1 TTTGTGAAACT
45521946 TTTGT
1 TTTGT
45521951 ATTGATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (11 bp):
TTTGTGAAACT
Found at i:45523484 original size:92 final size:92
Alignment explanation
Indices: 45523348--45523541 Score: 286
Period size: 92 Copynumber: 2.1 Consensus size: 92
45523338 TTGATTTTAG
* *
45523348 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCACTA-TATAATTA
1 TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTA-AATTA
*
45523412 TAT-TAAT-ATTAATTATTTTAAATTGTA
65 TATGTAATAATT-ATTATTTTAAATTATA
* *
45523439 TAAATTCATATAAGAAAATTTTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTA
1 TAAATTCATATAAGAAAA-TTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTA
45523504 TATGTAATAATTATTATTTTAAATTATA
65 TATGTAATAATTATTATTTTAAATTATA
*
45523532 CAAATTCATA
1 TAAATTCATA
45523542 AACTATAATC
Statistics
Matches: 93, Mismatches: 6, Indels: 6
0.89 0.06 0.06
Matches are distributed among these distances:
91 17 0.18
92 43 0.46
93 30 0.32
94 3 0.03
ACGTcount: A:0.45, C:0.04, G:0.04, T:0.47
Consensus pattern (92 bp):
TAAATTCATATAAGAAAATTTTATTATCAAGAATTTTATGAAATTATATATCACTATTAAATTAT
ATGTAATAATTATTATTTTAAATTATA
Found at i:45523589 original size:48 final size:52
Alignment explanation
Indices: 45523519--45523617 Score: 118
Period size: 52 Copynumber: 2.0 Consensus size: 52
45523509 AATAATTATT
45523519 ATTTTAAATTATACAAATTCATA-AACT-A-T-AATCATATTAGTTATAATA
1 ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
* * **
45523567 ATTTTAAATTTTATTAAA-TCATATATTTAATTAAATCATATTAGTTATAAT
1 ATTTTAAATTATA-CAAATTCATATAACTAATTAAATCATATTAGTTATAAT
45523618 CATATATTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
48 17 0.40
49 5 0.12
50 1 0.02
51 1 0.02
52 18 0.43
ACGTcount: A:0.45, C:0.06, G:0.02, T:0.46
Consensus pattern (52 bp):
ATTTTAAATTATACAAATTCATATAACTAATTAAATCATATTAGTTATAATA
Found at i:45523599 original size:17 final size:17
Alignment explanation
Indices: 45523574--45523607 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
45523564 ATAATTTTAA
*
45523574 ATTTTATTAAATCATAT
1 ATTTAATTAAATCATAT
45523591 ATTTAATTAAATCATAT
1 ATTTAATTAAATCATAT
45523608 TAGTTATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (17 bp):
ATTTAATTAAATCATAT
Found at i:45523624 original size:17 final size:16
Alignment explanation
Indices: 45523579--45523626 Score: 55
Period size: 17 Copynumber: 3.0 Consensus size: 16
45523569 TTTAAATTTT
45523579 ATTAAATCATATATTTA
1 ATTAAATCATATA-TTA
45523596 ATTAAATC--ATATTA
1 ATTAAATCATATATTA
*
45523610 GTTATAATCATATATTA
1 ATTA-AATCATATATTA
45523627 TGATTTGAGT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 6 0.22
15 7 0.26
17 14 0.52
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (16 bp):
ATTAAATCATATATTA
Found at i:45523698 original size:18 final size:17
Alignment explanation
Indices: 45523667--45523701 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45523657 ATTATTAAGA
45523667 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
45523684 ATTTTAATTATATTATAT
1 ATTTT-ATTAAATTATAT
45523702 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:45523767 original size:129 final size:130
Alignment explanation
Indices: 45523614--45523847 Score: 425
Period size: 129 Copynumber: 1.8 Consensus size: 130
45523604 ATATTAGTTA
*
45523614 TAATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
* *
45523679 TATATATTTTAATTATATTATATTTAATAATAATTATGTTATTTTATATTTTACAGCATCATATT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGCATCATATT
*
45523744 TAATAATA-ATTATGGTTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
1 TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
45523808 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 TATATATTTTAATTAAAATATATTTAATAATAATTATGTT
45523848 TAAATATGAT
Statistics
Matches: 100, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
129 93 0.93
130 7 0.07
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.49
Consensus pattern (130 bp):
TAATAATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAAT
TATATATTTTAATTAAAATATATTTAATAATAATTATGTTATTTTATATTTTACAGCATCATATT
Found at i:45523824 original size:18 final size:17
Alignment explanation
Indices: 45523796--45523830 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45523786 ATTATTAAGA
*
45523796 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45523813 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45523831 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45523942 original size:144 final size:147
Alignment explanation
Indices: 45523784--45524055 Score: 487
Period size: 144 Copynumber: 1.9 Consensus size: 147
45523774 ATAAGAATAT
*
45523784 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
45523849 AAATATGATTAAATTATTTATTATTGAT-AT-TAATCTTATTAAAATTTAAATAA-AATAATTTA
66 AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
45523911 CCAAAACAAATTTCTGC
131 CCAAAACAAATTTCTGC
45523928 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
*
45523993 AAATATGATTAAATTATTTATTTTTGATAATAAATAATCTTATTAAAATTTAAATAACAATAA
66 AAATATGATTAAATTATTTATTATTGATAAT--ATAATCTTATTAAAATTTAAATAACAATAA
45524056 CAATAATCAT
Statistics
Matches: 121, Mismatches: 2, Indels: 5
0.95 0.02 0.04
Matches are distributed among these distances:
144 91 0.75
145 2 0.02
148 23 0.19
149 5 0.04
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (147 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTAAATAATAATTATGTTT
AAATATGATTAAATTATTTATTATTGATAATATAATCTTATTAAAATTTAAATAACAATAATTTA
CCAAAACAAATTTCTGC
Found at i:45523968 original size:18 final size:17
Alignment explanation
Indices: 45523940--45523974 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
45523930 ATTATTAAGA
*
45523940 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
45523957 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
45523975 TAAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:45524185 original size:44 final size:45
Alignment explanation
Indices: 45524136--45524230 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
45524126 TTACACCTCT
* *
45524136 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
45524180 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
45524225 ATTACA
1 ATTACA
45524231 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:45524230 original size:16 final size:16
Alignment explanation
Indices: 45524211--45524278 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
45524201 GATTTGCTAT
* *
45524211 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
45524227 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
45524243 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
45524259 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
45524275 TACA
1 TACA
45524279 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.29
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:45540224 original size:24 final size:25
Alignment explanation
Indices: 45540197--45540244 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
45540187 CCTAGCAGAG
*
45540197 TCAGATCATATCAGA-AT-CAGATTT
1 TCAGAACATA-CAGATATACAGATTT
45540221 TCAGAACATACAGATATACAGATT
1 TCAGAACATACAGATATACAGATT
45540245 CCTACCCTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (25 bp):
TCAGAACATACAGATATACAGATTT
Found at i:45541327 original size:6 final size:5
Alignment explanation
Indices: 45541295--45541325 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
45541285 TGAGAAAGGG
45541295 AAAAT AAAAT AAAAT AAAAT AAAATT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAA-T AAAAT
45541326 TACACATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (5 bp):
AAAAT
Found at i:45545024 original size:27 final size:26
Alignment explanation
Indices: 45544994--45545045 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
45544984 AAATATATAT
45544994 TTTTTTATTTTTTTAATTTTAAAATAC
1 TTTTTTA-TTTTTTAATTTTAAAATAC
*
45545021 TTTTTTATTTTTTATTTTTAAAATA
1 TTTTTTATTTTTTAATTTTAAAATA
45545046 AAATTTTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.69
Consensus pattern (26 bp):
TTTTTTATTTTTTAATTTTAAAATAC
Found at i:45545052 original size:27 final size:27
Alignment explanation
Indices: 45544995--45545052 Score: 73
Period size: 26 Copynumber: 2.2 Consensus size: 27
45544985 AATATATATT
**
45544995 TTTTTATTTTTTTAATTTTAAAATACT
1 TTTTTATTTTTTTAATTTTAAAATAAA
*
45545022 TTTTTA-TTTTTTATTTTTAAAATAAA
1 TTTTTATTTTTTTAATTTTAAAATAAA
*
45545048 ATTTT
1 TTTTT
45545053 GGTGTTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (27 bp):
TTTTTATTTTTTTAATTTTAAAATAAA
Found at i:45549523 original size:57 final size:57
Alignment explanation
Indices: 45549423--45549601 Score: 243
Period size: 57 Copynumber: 3.1 Consensus size: 57
45549413 ATAGAAATGT
* * * *
45549423 TGAAAATGGAGAAATGAGAAACATTTGAAAATAATTATGGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAAAG-GAATCATTTGGAAATGATTATGGTTTTCTCCAAAATGAAAA
*
45549481 TGAAAATGGAGAAAAGGAATCATTTGGAAATGATTATTGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAAAGGAATCATTTGGAAATGATTATGGTTTTCTCCAAAATGAAAA
* * * *
45549538 CGAAAATGGAAAAAATGAATCATTTGGAAATGAATT-TGGTTTTCTCCAAAATAAAAA
1 TGAAAATGGAGAAAAGGAATCATTTGGAAATG-ATTATGGTTTTCTCCAAAATGAAAA
*
45549595 TAAAAAT
1 TGAAAAT
45549602 AAAAATGACC
Statistics
Matches: 108, Mismatches: 12, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
57 90 0.83
58 18 0.17
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.28
Consensus pattern (57 bp):
TGAAAATGGAGAAAAGGAATCATTTGGAAATGATTATGGTTTTCTCCAAAATGAAAA
Found at i:45549799 original size:28 final size:26
Alignment explanation
Indices: 45549768--45549820 Score: 70
Period size: 28 Copynumber: 2.0 Consensus size: 26
45549758 TTATAATTGG
45549768 ATTGAGAAGATTATTTAATTAGAAATAT
1 ATTGAGAAGATTATTT--TTAGAAATAT
* *
45549796 ATTGAGATGTTTATTTTTAGAAATA
1 ATTGAGAAGATTATTTTTAGAAATA
45549821 GAAAAACAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
26 9 0.39
28 14 0.61
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.43
Consensus pattern (26 bp):
ATTGAGAAGATTATTTTTAGAAATAT
Found at i:45552199 original size:28 final size:28
Alignment explanation
Indices: 45552167--45552249 Score: 67
Period size: 30 Copynumber: 2.8 Consensus size: 28
45552157 ACAAGGGTCA
45552167 CACACCTGTGTGGCCAGGCCGTGCACCT
1 CACACCTGTGTGGCCAGGCCGTGCACCT
** * **
45552195 CACACGCACATGTGGCCAGGACGTGTGCCT
1 CACAC-C-TGTGTGGCCAGGCCGTGCACCT
* *
45552225 CACGTGCTTGTGTGGCCAGGCCGTG
1 CAC--ACCTGTGTGGCCAGGCCGTG
45552250 TAACTCTCTG
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
28 5 0.12
29 1 0.02
30 34 0.83
32 1 0.02
ACGTcount: A:0.14, C:0.34, G:0.33, T:0.19
Consensus pattern (28 bp):
CACACCTGTGTGGCCAGGCCGTGCACCT
Found at i:45553855 original size:12 final size:12
Alignment explanation
Indices: 45553803--45553850 Score: 60
Period size: 12 Copynumber: 3.8 Consensus size: 12
45553793 ATTTTTTCTT
45553803 TTATTATAACTA
1 TTATTATAACTA
*
45553815 TTATTATTACTA
1 TTATTATAACTA
*
45553827 TTATTATTAACTT
1 TTATTA-TAACTA
45553840 TATATTATAAC
1 T-TATTATAAC
45553851 ATATAGTATA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
12 17 0.55
13 9 0.29
14 5 0.16
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (12 bp):
TTATTATAACTA
Found at i:45555893 original size:25 final size:25
Alignment explanation
Indices: 45555865--45555952 Score: 63
Period size: 25 Copynumber: 3.5 Consensus size: 25
45555855 GTTACTTGGG
*
45555865 AAGCCTTTGTGGCTAATCTTGTGAA
1 AAGCCTTTATGGCTAATCTTGTGAA
* * * *
45555890 AAGCCTATATAGCGTATTACTTG-G-G
1 AAGCCTTTATGGC-TAAT-CTTGTGAA
* * *
45555915 AAGTCTTTGTGGCTAATCTTATGAA
1 AAGCCTTTATGGCTAATCTTGTGAA
*
45555940 AAGTCTTTATGGC
1 AAGCCTTTATGGC
45555953 GTGTTACCTG
Statistics
Matches: 46, Mismatches: 13, Indels: 8
0.69 0.19 0.12
Matches are distributed among these distances:
23 3 0.07
24 4 0.09
25 31 0.67
26 4 0.09
27 4 0.09
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (25 bp):
AAGCCTTTATGGCTAATCTTGTGAA
Found at i:45555931 original size:50 final size:50
Alignment explanation
Indices: 45555856--45555965 Score: 157
Period size: 50 Copynumber: 2.2 Consensus size: 50
45555846 ACACAATAGG
*
45555856 TTACTTGGGAAGCCTTTGTGGCTAATCTTGTGAAAAGCCTATATAGCGTA
1 TTACTTGGGAAGCCTTTGTGGCTAATCTTATGAAAAGCCTATATAGCGTA
* * * * *
45555906 TTACTTGGGAAGTCTTTGTGGCTAATCTTATGAAAAGTCTTTATGGCGTG
1 TTACTTGGGAAGCCTTTGTGGCTAATCTTATGAAAAGCCTATATAGCGTA
*
45555956 TTACCTGGGA
1 TTACTTGGGA
45555966 CAATGTACAT
Statistics
Matches: 53, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 53 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (50 bp):
TTACTTGGGAAGCCTTTGTGGCTAATCTTATGAAAAGCCTATATAGCGTA
Found at i:45562110 original size:19 final size:20
Alignment explanation
Indices: 45562086--45562123 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
45562076 ATTTAAAAAT
45562086 TTAAAAAA-TATAAAATTTG
1 TTAAAAAAGTATAAAATTTG
45562105 TTAAAAAAGTATAAAATTT
1 TTAAAAAAGTATAAAATTT
45562124 AATTAATTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (20 bp):
TTAAAAAAGTATAAAATTTG
Found at i:45565722 original size:8 final size:8
Alignment explanation
Indices: 45565709--45565741 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
45565699 TATACTAAAC
45565709 AATAAAAT
1 AATAAAAT
45565717 AATAAAAT
1 AATAAAAT
45565725 AATAAAAT
1 AATAAAAT
45565733 AATAAAAT
1 AATAAAAT
45565741 A
1 A
45565742 TTATTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AATAAAAT
Found at i:45589941 original size:56 final size:51
Alignment explanation
Indices: 45589862--45590047 Score: 180
Period size: 50 Copynumber: 3.6 Consensus size: 51
45589852 AGGAATGAGA
* * * *
45589862 TCCCATGTAAGACCATATCTGGGATATGGCGTTTGGATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACTATGTCTGGGACATGGCGTTTGG--CACTGAGA-TA--AGAGG
* *
45589918 TCCCATTTAAGACTATGTTTGGGACATGGCG-TTGGCACTGAGATAAGAGG
1 TCCCATGTAAGACTATGTCTGGGACATGGCGTTTGGCACTGAGATAAGAGG
* ** * *
45589968 TCCCATGTAAGACTATGTCTAGGACATGGCG-TTGGCACCAAGATGAGAAG
1 TCCCATGTAAGACTATGTCTGGGACATGGCGTTTGGCACTGAGATAAGAGG
* *
45590018 TCCTC-TGTAAGACCATGTCTAGGACATGGC
1 TCC-CATGTAAGACTATGTCTGGGACATGGC
45590048 ATAGGCACCG
Statistics
Matches: 115, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
50 75 0.65
51 1 0.01
52 2 0.02
53 7 0.06
55 4 0.03
56 26 0.23
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (51 bp):
TCCCATGTAAGACTATGTCTGGGACATGGCGTTTGGCACTGAGATAAGAGG
Found at i:45590027 original size:50 final size:50
Alignment explanation
Indices: 45589910--45590077 Score: 203
Period size: 50 Copynumber: 3.4 Consensus size: 50
45589900 CATTGAGATT
* * * * *
45589910 ATGAGAGGTCCCATTTAAGACTATGTTTGGGACATGGCGTTGGCACTGAG
1 ATGAGAAGTCCCATGTAAGACTATGTCTAGGACATGGCGTTGGCACCGAG
* * *
45589960 ATAAGAGGTCCCATGTAAGACTATGTCTAGGACATGGCGTTGGCACCAAG
1 ATGAGAAGTCCCATGTAAGACTATGTCTAGGACATGGCGTTGGCACCGAG
* * * *
45590010 ATGAGAAGTCCTC-TGTAAGACCATGTCTAGGACATGGCATAGGCACCGAT
1 ATGAGAAGTCC-CATGTAAGACTATGTCTAGGACATGGCGTTGGCACCGAG
*
45590060 ATGAGAACTCCCATGTAA
1 ATGAGAAGTCCCATGTAA
45590078 AACCACATCT
Statistics
Matches: 102, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 1 0.01
50 100 0.98
51 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (50 bp):
ATGAGAAGTCCCATGTAAGACTATGTCTAGGACATGGCGTTGGCACCGAG
Found at i:45590089 original size:50 final size:50
Alignment explanation
Indices: 45589985--45590091 Score: 126
Period size: 50 Copynumber: 2.1 Consensus size: 50
45589975 TAAGACTATG
* * * * **
45589985 TCTAGGACATGGCGTTGGCACCAAGATGAGAAGTCCTCTGTAAGACCATG
1 TCTAGGACATGGCATAGGCACCAAGATGAGAACTCCTCTGTAAAACCACA
* *
45590035 TCTAGGACATGGCATAGGCACCGATATGAGAACTCC-CATGTAAAACCACA
1 TCTAGGACATGGCATAGGCACCAAGATGAGAACTCCTC-TGTAAAACCACA
45590085 TCTAGGA
1 TCTAGGA
45590092 TATGACATTG
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
49 1 0.02
50 47 0.98
ACGTcount: A:0.32, C:0.23, G:0.24, T:0.21
Consensus pattern (50 bp):
TCTAGGACATGGCATAGGCACCAAGATGAGAACTCCTCTGTAAAACCACA
Found at i:45600082 original size:22 final size:23
Alignment explanation
Indices: 45600056--45600102 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
45600046 AAATATTATG
*
45600056 TATTTAAAATGTTTAATTAA-AA
1 TATTTAAAATGTTAAATTAATAA
* *
45600078 TATTTTATATGTTAAATTAATAA
1 TATTTAAAATGTTAAATTAATAA
45600101 TA
1 TA
45600103 AAGGAATAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 17 0.81
23 4 0.19
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (23 bp):
TATTTAAAATGTTAAATTAATAA
Found at i:45600944 original size:20 final size:19
Alignment explanation
Indices: 45600879--45600944 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
45600869 CACTTACGTG
*
45600879 CCCCTATTTGTACTTCAGTA
1 CCCCTGTTTGTACTTC-GTA
* * *
45600899 CCCCTGATTGCACTTACGTG
1 CCCCTGTTTGTACTT-CGTA
45600919 CCCCTGTTTGTACTTCGGTA
1 CCCCTGTTTGTACTTC-GTA
45600939 CCCCTG
1 CCCCTG
45600945 ATTGCACCTA
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 1 0.03
20 35 0.95
21 1 0.03
ACGTcount: A:0.14, C:0.35, G:0.17, T:0.35
Consensus pattern (19 bp):
CCCCTGTTTGTACTTCGTA
Found at i:45600991 original size:40 final size:40
Alignment explanation
Indices: 45600863--45600983 Score: 188
Period size: 40 Copynumber: 3.0 Consensus size: 40
45600853 AATTATTGAA
*
45600863 TGATTGCACTTACGTGCCCCTATTTGTACTTCAGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCC
*
45600903 TGATTGCACTTACGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCC
* * * *
45600943 TGATTGCACCTACGTGTCCTTATTTGTACTTGGGTACCCC
1 TGATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCC
45600983 T
1 T
45600984 CAATGCACAT
Statistics
Matches: 74, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.15, C:0.31, G:0.18, T:0.36
Consensus pattern (40 bp):
TGATTGCACTTACGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:45601003 original size:80 final size:80
Alignment explanation
Indices: 45600863--45601031 Score: 203
Period size: 80 Copynumber: 2.1 Consensus size: 80
45600853 AATTATTGAA
* * * * * *
45600863 TGATTGCACTTACGTGCCCCTATTTGTACTTCAGTACCCCTGATTGCACTTACGTGCCCCTGTTT
1 TGATTGCACCTACGTGCCCCTATTTGTACTTCAGTACCCCTCAATGCACATACGTACCCCTGTCT
* *
45600928 GTACTTCGGTACCCC
66 GCACTTCGATACCCC
* * ** *
45600943 TGATTGCACCTACGTGTCCTTATTTGTACTTGGGTACCCCTCAATGCACATATGTACCCCTGTCT
1 TGATTGCACCTACGTGCCCCTATTTGTACTTCAGTACCCCTCAATGCACATACGTACCCCTGTCT
*
45601008 GCACTTCGATGCCCC
66 GCACTTCGATACCCC
*
45601023 TGATCGCAC
1 TGATTGCAC
45601032 ATTTGTGCTT
Statistics
Matches: 74, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 74 1.00
ACGTcount: A:0.17, C:0.33, G:0.18, T:0.33
Consensus pattern (80 bp):
TGATTGCACCTACGTGCCCCTATTTGTACTTCAGTACCCCTCAATGCACATACGTACCCCTGTCT
GCACTTCGATACCCC
Found at i:45608947 original size:12 final size:12
Alignment explanation
Indices: 45608922--45608960 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
45608912 ACTCGCTTCT
* *
45608922 TTACTTACTCAC
1 TTACTTGCTTAC
*
45608934 TTACTTGTTTAC
1 TTACTTGCTTAC
45608946 TTACTTGCTTAC
1 TTACTTGCTTAC
45608958 TTA
1 TTA
45608961 AATAACTCAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.21, C:0.23, G:0.05, T:0.51
Consensus pattern (12 bp):
TTACTTGCTTAC
Found at i:45609285 original size:50 final size:50
Alignment explanation
Indices: 45609222--45609441 Score: 271
Period size: 50 Copynumber: 4.4 Consensus size: 50
45609212 GAATGTCATA
* ** * * * *
45609222 TCCCAGATATGGTCTTACATGGGAGTTCTCATATCGGTGCCCATGCAATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
***
45609272 TCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
*
45609322 TCCCAGACAGGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
1 TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
* * * * *
45609372 TCCCAGACATGGTCTTACGA-GAGACCTCTCATCTTGGTGGCAACGCAATT
1 TCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGGTGCCAACGCCATG
*
45609422 TCCTAGACATGGTCTTACAT
1 TCCCAGACATGGTCTTACAT
45609442 AGGATCTCAT
Statistics
Matches: 147, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
49 1 0.01
50 145 0.99
51 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.26
Consensus pattern (50 bp):
TCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATG
Found at i:45632013 original size:63 final size:62
Alignment explanation
Indices: 45631921--45632048 Score: 211
Period size: 63 Copynumber: 2.0 Consensus size: 62
45631911 TGATAGCAAC
* *
45631921 AAACTAGCCTCTATCCATAGTTTTCACTCCTTGATAATCATGGTAGAGAAAAGACTAACAAT
1 AAACTAGCCTCAATCCATAATTTTCACTCCTTGATAATCATGGTAGAGAAAAGACTAACAAT
* *
45631983 AAACTAGCCTCCAATCCATAATTTTCACTCCTTGATAATCATGGTAGAGAAAATATTAACAAT
1 AAACTAGCCT-CAATCCATAATTTTCACTCCTTGATAATCATGGTAGAGAAAAGACTAACAAT
45632046 AAA
1 AAA
45632049 AAAGTTCAAC
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
62 10 0.16
63 51 0.84
ACGTcount: A:0.40, C:0.20, G:0.11, T:0.29
Consensus pattern (62 bp):
AAACTAGCCTCAATCCATAATTTTCACTCCTTGATAATCATGGTAGAGAAAAGACTAACAAT
Found at i:45636072 original size:24 final size:24
Alignment explanation
Indices: 45636042--45636091 Score: 100
Period size: 24 Copynumber: 2.1 Consensus size: 24
45636032 AGAAGGGAGA
45636042 AAAACAGGGGCAGAAGCAAAAGAG
1 AAAACAGGGGCAGAAGCAAAAGAG
45636066 AAAACAGGGGCAGAAGCAAAAGAG
1 AAAACAGGGGCAGAAGCAAAAGAG
45636090 AA
1 AA
45636092 CGGAAAATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.56, C:0.12, G:0.32, T:0.00
Consensus pattern (24 bp):
AAAACAGGGGCAGAAGCAAAAGAG
Found at i:45637838 original size:28 final size:28
Alignment explanation
Indices: 45637806--45637861 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
45637796 TAGTCCTCGA
45637806 AGTTAGTCCTTGAAATTGAAAATTAAAT
1 AGTTAGTCCTTGAAATTGAAAATTAAAT
45637834 AGTTAGTCCTTGAAATTGAAAATTAAAT
1 AGTTAGTCCTTGAAATTGAAAATTAAAT
45637862 CCAGAGTTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.07, G:0.14, T:0.36
Consensus pattern (28 bp):
AGTTAGTCCTTGAAATTGAAAATTAAAT
Found at i:45638426 original size:7 final size:7
Alignment explanation
Indices: 45638414--45638441 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
45638404 ACAAAATTGA
45638414 TAGAATT
1 TAGAATT
45638421 TAGAATT
1 TAGAATT
45638428 TAGAATT
1 TAGAATT
45638435 TAGAATT
1 TAGAATT
45638442 AGGATTAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.43, C:0.00, G:0.14, T:0.43
Consensus pattern (7 bp):
TAGAATT
Found at i:45638665 original size:4 final size:4
Alignment explanation
Indices: 45638656--45638686 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
45638646 CTTAAAAATT
45638656 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA ATA
45638687 TATATATTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:45639170 original size:14 final size:14
Alignment explanation
Indices: 45639151--45639183 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
45639141 ACCTATAATA
45639151 AAATATTAAAAAAG
1 AAATATTAAAAAAG
*
45639165 AAATATTTAAAAAG
1 AAATATTAAAAAAG
45639179 AAATA
1 AAATA
45639184 CACAAGCTGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.70, C:0.00, G:0.06, T:0.24
Consensus pattern (14 bp):
AAATATTAAAAAAG
Found at i:45643448 original size:14 final size:14
Alignment explanation
Indices: 45643431--45643457 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
45643421 TGGGTTTATG
45643431 GGTTTTGGTTATAA
1 GGTTTTGGTTATAA
45643445 GGTTTTGGTTATA
1 GGTTTTGGTTATA
45643458 GGCAAATAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.19, C:0.00, G:0.30, T:0.52
Consensus pattern (14 bp):
GGTTTTGGTTATAA
Found at i:45643615 original size:26 final size:27
Alignment explanation
Indices: 45643586--45643636 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
45643576 AAGAGGAAAG
45643586 TTTAAAGAACATAAAA-GAAAAAAAAA
1 TTTAAAGAACATAAAACGAAAAAAAAA
** *
45643612 TTTAAATTACTTAAAACGAAAAAAA
1 TTTAAAGAACATAAAACGAAAAAAA
45643637 TATGGGGATC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 13 0.62
27 8 0.38
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.22
Consensus pattern (27 bp):
TTTAAAGAACATAAAACGAAAAAAAAA
Found at i:45645060 original size:23 final size:23
Alignment explanation
Indices: 45645008--45645062 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 23
45644998 TGAATTTAAC
* * * *
45645008 TTAAAAG-AAGAAACAAATATAT
1 TTAAAAGAAAGAAAAAAAAACAA
45645030 TTAGAAAGAAAGAAAAAAAAACAA
1 TTA-AAAGAAAGAAAAAAAAACAA
45645054 TTAAAAGAA
1 TTAAAAGAA
45645063 CAAATTAAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 3 0.11
23 10 0.37
24 14 0.52
ACGTcount: A:0.69, C:0.04, G:0.11, T:0.16
Consensus pattern (23 bp):
TTAAAAGAAAGAAAAAAAAACAA
Found at i:45646991 original size:13 final size:13
Alignment explanation
Indices: 45646973--45646997 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45646963 TGAAGTGATT
45646973 ATAAGGTTAATTA
1 ATAAGGTTAATTA
45646986 ATAAGGTTAATT
1 ATAAGGTTAATT
45646998 TAGTAAATCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.00, G:0.16, T:0.40
Consensus pattern (13 bp):
ATAAGGTTAATTA
Found at i:45656361 original size:50 final size:50
Alignment explanation
Indices: 45656246--45656438 Score: 248
Period size: 50 Copynumber: 3.8 Consensus size: 50
45656236 GATAATAACA
* ** *
45656246 TGCCAAAGCCATGTCCCAGACATGGTCTTAC-GTGGGATTTTCTCATATCGG
1 TGCCAAATCCATGTCCCAGACATGGTCTTACAG-GGGA-CCTCTCATCTCGG
*
45656297 TGCC-CATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
1 TGCCAAAT-CCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
45656347 TGCCAAATCCATGTCCCAGACATGATCTTACATGGGACCTCTCATCTCGG
1 TGCCAAATCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
45656397 TGCCAACA-CCATGTCCCAGACATGGTCTTACATGAGACCTCT
1 TGCCAA-ATCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
45656439 TTACCCAAAT
Statistics
Matches: 128, Mismatches: 10, Indels: 9
0.87 0.07 0.06
Matches are distributed among these distances:
50 93 0.73
51 34 0.27
52 1 0.01
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAAATCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:45656424 original size:100 final size:101
Alignment explanation
Indices: 45656246--45656438 Score: 280
Period size: 100 Copynumber: 1.9 Consensus size: 101
45656236 GATAATAACA
* * ** * **
45656246 TGCCAAAGCCATGTCCCAGACATGGTCTTACGTGGGATTTTCTCATATCGGTGCCCATGCCATGT
1 TGCCAAAGCCATGTCCCAGACATGATCTTACATGGGATCCTCTCATATCGGTGCCAACACCATGT
*
45656311 CCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
66 CCCAGACATGGTCTTACAGGAGACCTCTCATCTCGG
* *
45656347 TGCCAAATCCATGTCCCAGACATGATCTTACATGGGA-CCTCTCATCTCGGTGCCAACACCATGT
1 TGCCAAAGCCATGTCCCAGACATGATCTTACATGGGATCCTCTCATATCGGTGCCAACACCATGT
*
45656411 CCCAGACATGGTCTTACATGAGACCTCT
66 CCCAGACATGGTCTTACAGGAGACCTCT
45656439 TTACCCAAAT
Statistics
Matches: 81, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
100 47 0.58
101 34 0.42
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (101 bp):
TGCCAAAGCCATGTCCCAGACATGATCTTACATGGGATCCTCTCATATCGGTGCCAACACCATGT
CCCAGACATGGTCTTACAGGAGACCTCTCATCTCGG
Found at i:45656552 original size:13 final size:13
Alignment explanation
Indices: 45656534--45656560 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
45656524 AGTCAACATT
45656534 AAATAAATTCATA
1 AAATAAATTCATA
45656547 AAATAAATTCATA
1 AAATAAATTCATA
45656560 A
1 A
45656561 TTTCTGGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATAAATTCATA
Found at i:45660273 original size:18 final size:18
Alignment explanation
Indices: 45660228--45660306 Score: 83
Period size: 18 Copynumber: 4.4 Consensus size: 18
45660218 GTGAACCATG
*
45660228 TTAACTTGGTGAA-T-TA
1 TTAATTTGGTGAACTGTA
*
45660244 TATAATTATGGTGAACTGTG
1 T-TAATT-TGGTGAACTGTA
45660264 TTAATTTGGTGATA-TGTA
1 TTAATTTGGTGA-ACTGTA
*
45660282 TTAATATGGTGAACTGTA
1 TTAATTTGGTGAACTGTA
45660300 TTAATTT
1 TTAATTT
45660307 TCCAAACTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
16 1 0.02
17 5 0.10
18 37 0.71
19 7 0.13
20 2 0.04
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (18 bp):
TTAATTTGGTGAACTGTA
Found at i:45660304 original size:36 final size:36
Alignment explanation
Indices: 45660228--45660306 Score: 108
Period size: 36 Copynumber: 2.2 Consensus size: 36
45660218 GTGAACCATG
* *
45660228 TTAACTTGGTGAATTATATAATTATGGTGAACTGTG
1 TTAATTTGGTGAATTATATAATTATGGTGAACTGTA
45660264 TTAATTTGGTGATATGTAT-TAA-TATGGTGAACTGTA
1 TTAATTTGGTGA-AT-TATATAATTATGGTGAACTGTA
45660300 TTAATTT
1 TTAATTT
45660307 TCCAAACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
36 31 0.79
37 5 0.13
38 3 0.08
ACGTcount: A:0.30, C:0.04, G:0.20, T:0.46
Consensus pattern (36 bp):
TTAATTTGGTGAATTATATAATTATGGTGAACTGTA
Found at i:45662786 original size:13 final size:13
Alignment explanation
Indices: 45662770--45662794 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
45662760 GTGTTAATGC
45662770 ATATATATATAAT
1 ATATATATATAAT
45662783 ATATATATATAA
1 ATATATATATAA
45662795 AAAGAACATA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
ATATATATATAAT
Found at i:45663034 original size:12 final size:12
Alignment explanation
Indices: 45663019--45663048 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
45663009 GTATATACGC
45663019 ATATATGTATAT
1 ATATATGTATAT
*
45663031 ATATATTTATAT
1 ATATATGTATAT
45663043 ATATAT
1 ATATAT
45663049 AAAATAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (12 bp):
ATATATGTATAT
Found at i:45663172 original size:20 final size:20
Alignment explanation
Indices: 45663136--45663195 Score: 61
Period size: 20 Copynumber: 3.0 Consensus size: 20
45663126 ACATACGCGC
*
45663136 ATATAATGTAAGT-ATAATGA
1 ATATAATATAAGTAATAAT-A
45663156 ATATAATATAA-TAATAACTA
1 ATATAATATAAGTAATAA-TA
* *
45663176 ATATAATAAAATTAATAATA
1 ATATAATATAAGTAATAATA
45663196 TAAAAAAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 1 0.03
20 27 0.77
21 7 0.20
ACGTcount: A:0.58, C:0.02, G:0.05, T:0.35
Consensus pattern (20 bp):
ATATAATATAAGTAATAATA
Found at i:45663196 original size:17 final size:17
Alignment explanation
Indices: 45663149--45663203 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 17
45663139 TAATGTAAGT
45663149 ATAATGAATATAATATAATA
1 ATAAT-AATATAATA-AA-A
45663169 ATAACTAATATAATAAAA
1 ATAA-TAATATAATAAAA
*
45663187 TTAATAATATAA-AAAA
1 ATAATAATATAATAAAA
45663203 A
1 A
45663204 CTAAAACAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 4 0.12
17 8 0.25
18 4 0.12
19 2 0.06
20 13 0.41
21 1 0.03
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (17 bp):
ATAATAATATAATAAAA
Found at i:45664802 original size:50 final size:50
Alignment explanation
Indices: 45664748--45665423 Score: 347
Period size: 50 Copynumber: 13.5 Consensus size: 50
45664738 TAAGGAGGTA
* * * *
45664748 AGATCCGCCGTTGTGGCTTCAATATTTTTAATTGCGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
** * * ** ** * * * * ** *
45664798 AGATCTACTGCTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGACGTA
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
** * * *
45664848 AGATCTACCGTTGTGGCTTCAATCTTTTTAATTGAGCTGTCGGGGAAATC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
** ** * * * * * *
45664898 AGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
* * * *
45664948 AGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGTGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
* ** ** * * * * *
45664998 AGATCCGCTGTTGTGACTTCAATCTGCTCCACTGC-ATCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCT-GTCAGGGAAATC
* * * *
45665048 AGATCCGCCGTTGTGGCTTTAATC-TTTTAATTGCGCTGTCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
* ** ** * * * * *
45665097 AGATCTGCCGTTGTGACTTCAATCTGCTCCACTGC-ATCGCCAGGGAAGTA
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCT-GTCAGGGAAATC
* * *
45665147 AGATCCACCGTTGTGGCTTCAATCTTTTTAATTGCGCTGTCAGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
** * ** ** * * * * ** *
45665197 AGATCTACTGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGACGTA
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
** * * * *
45665247 AGATCTACCGTTGTGGCTTCAATCTTTTTAATTGCGCTATCGGGGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
* ** * * ** * *
45665297 AGATCCGCCGTTGTGACTTCAAT-TTGCTCCACTGC-ATCACCAGGGAAGTA
1 AGATCCGCCGTTGTGACTTCAATCTT-TTTAATTGCGCT-GTCAGGGAAATC
* * * * * * *
45665347 AGATCTGCCGTTGTGGCTTCAATCTTTTTAATTTTCTCTAT-TGGAGAAACC
1 AGATCCGCCGTTGTGACTTCAATCTTTTTAA-TTGCGCTGTCAGG-GAAATC
45665398 AGATCCGCCGTTGTGACTTCAATCTT
1 AGATCCGCCGTTGTGACTTCAATCTT
45665424 CTCCACTACA
Statistics
Matches: 437, Mismatches: 178, Indels: 21
0.69 0.28 0.03
Matches are distributed among these distances:
49 38 0.09
50 365 0.84
51 33 0.08
52 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.23, T:0.30
Consensus pattern (50 bp):
AGATCCGCCGTTGTGACTTCAATCTTTTTAATTGCGCTGTCAGGGAAATC
Found at i:45664849 original size:100 final size:100
Alignment explanation
Indices: 45664685--45665430 Score: 1064
Period size: 100 Copynumber: 7.5 Consensus size: 100
45664675 CCAATTACAA
* * * * * * * * *
45664685 TGTCGAGGAAACAAGATCCGCCGTCGT-AGCTTCAATCTGTTCAACTGCACTGCTAAGGAGGTAA
1 TGTCGGGGAAACCAGATCCGCCGTTGTGA-CTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAA
*
45664749 GATCCGCCGTTGTGGCTTCAATATTTTTAATTGCGC
65 GATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
** * * *
45664785 TGTCGGGGAAACCAGATCTACTGCTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGACGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
** *
45664850 ATCTACCGTTGTGGCTTCAATCTTTTTAATTGAGC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
*
45664885 TGTCGGGGAAATCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
*
45664950 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGTGC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
* *
45664985 TGTCGGGGAAACCAGATCCGCTGTTGTGACTTCAATCTGCTCCACTGCATCGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
*
45665050 ATCCGCCGTTGTGGCTTTAATC-TTTTAATTGCGC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
* *
45665084 TGTCGGGGAAACCAGATCTGCCGTTGTGACTTCAATCTGCTCCACTGCATCGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
*
45665149 ATCCACCGTTGTGGCTTCAATCTTTTTAATTGCGC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
* ** * *
45665184 TGTCAGGGAAACCAGATCTACTGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGACGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
**
45665249 ATCTACCGTTGTGGCTTCAATCTTTTTAATTGCGC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
* * * *
45665284 TATCGGGGAAACCAGATCCGCCGTTGTGACTTCAATTTGCTCCACTGCATCACCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
* * *
45665349 ATCTGCCGTTGTGGCTTCAATCTTTTTAATTTTCTC
66 ATCCGCCGTTGTGGCTTCAATCTTTTTAA-TTGCGC
* * * *
45665385 TATTGGAGAAACCAGATCCGCCGTTGTGACTTCAATCTTCTCCACT
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACT
45665431 ACAACACTAA
Statistics
Matches: 586, Mismatches: 57, Indels: 5
0.90 0.09 0.01
Matches are distributed among these distances:
99 94 0.16
100 445 0.76
101 47 0.08
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (100 bp):
TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAG
ATCCGCCGTTGTGGCTTCAATCTTTTTAATTGCGC
Found at i:45665237 original size:299 final size:299
Alignment explanation
Indices: 45664685--45665430 Score: 1091
Period size: 299 Copynumber: 2.5 Consensus size: 299
45664675 CCAATTACAA
* * * * * * * *
45664685 TGTCGAGGAAACAAGATCCGCCGTCGT-AGCTTCAATCTGTTCAACTGCA-CTGCTAAGGAGGTA
1 TGTCGGGGAAACCAGATCCGCCGTTGTGA-CTTCAATCTGCTCCACTGCATC-GCCAGGGAAGTA
* * * *
45664748 AGATCCGCCGTTGTGGCTTCAATATTTTTAATTGCGCTGTCGGGGAAACCAGATCTACTGCTGTG
64 AGATCCGCCGTTGTGGCTTCAAT-CTTTTAATTGCGCTGTCGGGGAAACCAGATCTGCCGTTGTG
* *
45664813 ACTTCAATCTGCTCCACTGCACCGCCAGGGACGTAAGATCTACCGTTGTGGCTTCAATCTTTTTA
128 ACTTCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCACCGTTGTGGCTTCAATCTTTTTA
* * *
45664878 ATTGAGCTGTCGGGGAAATCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGG
193 ATTGAGCTGTCAGGGAAACCAGATCCACCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGG
* *
45664943 AAGTAAGATCCGCCGTTGTGGCTTCAATCTTTTTAATTGTGC
258 AAGTAAGATCCACCGTTGTGGCTTCAATCTTTTTAATTGCGC
*
45664985 TGTCGGGGAAACCAGATCCGCTGTTGTGACTTCAATCTGCTCCACTGCATCGCCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCATCGCCAGGGAAGTAAG
*
45665050 ATCCGCCGTTGTGGCTTTAATCTTTTAATTGCGCTGTCGGGGAAACCAGATCTGCCGTTGTGACT
66 ATCCGCCGTTGTGGCTTCAATCTTTTAATTGCGCTGTCGGGGAAACCAGATCTGCCGTTGTGACT
*
45665115 TCAATCTGCTCCACTGCATCGCCAGGGAAGTAAGATCCACCGTTGTGGCTTCAATCTTTTTAATT
131 TCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCACCGTTGTGGCTTCAATCTTTTTAATT
* * * *
45665180 GCGCTGTCAGGGAAACCAGATCTACTGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGACG
196 GAGCTGTCAGGGAAACCAGATCCACCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAG
*
45665245 TAAGATCTACCGTTGTGGCTTCAATCTTTTTAATTGCGC
261 TAAGATCCACCGTTGTGGCTTCAATCTTTTTAATTGCGC
* * *
45665284 TATCGGGGAAACCAGATCCGCCGTTGTGACTTCAATTTGCTCCACTGCATCACCAGGGAAGTAAG
1 TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCATCGCCAGGGAAGTAAG
* * * * * * *
45665349 ATCTGCCGTTGTGGCTTCAATCTTTTTAATTTTCTCTATTGGAGAAACCAGATCCGCCGTTGTGA
66 ATCCGCCGTTGTGGCTTCAATC-TTTTAA-TTGCGCTGTCGGGGAAACCAGATCTGCCGTTGTGA
*
45665414 CTTCAATCTTCTCCACT
129 CTTCAATCTGCTCCACT
45665431 ACAACACTAA
Statistics
Matches: 402, Mismatches: 40, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
299 277 0.69
300 78 0.19
301 47 0.12
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.30
Consensus pattern (299 bp):
TGTCGGGGAAACCAGATCCGCCGTTGTGACTTCAATCTGCTCCACTGCATCGCCAGGGAAGTAAG
ATCCGCCGTTGTGGCTTCAATCTTTTAATTGCGCTGTCGGGGAAACCAGATCTGCCGTTGTGACT
TCAATCTGCTCCACTGCACCGCCAGGGAAGTAAGATCCACCGTTGTGGCTTCAATCTTTTTAATT
GAGCTGTCAGGGAAACCAGATCCACCGTTGTGACTTCAATCTGCTCCACTGCACCGCCAGGGAAG
TAAGATCCACCGTTGTGGCTTCAATCTTTTTAATTGCGC
Done.