Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 151 of 199
Found at i:50000966 original size:29 final size:29
Alignment explanation
Indices: 50000933--50001005 Score: 119
Period size: 29 Copynumber: 2.5 Consensus size: 29
50000923 TTAGATATTA
* *
50000933 TTAAATATGTCCTAATTAGTTTAGGAGTT
1 TTAAATATGTCCTAATTAGTTCAAGAGTT
*
50000962 TTAAATATGTCCTAATTAGTTCAAGTGTT
1 TTAAATATGTCCTAATTAGTTCAAGAGTT
50000991 TTAAATATGTCCTAA
1 TTAAATATGTCCTAA
50001006 ACTAATACAT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.44
Consensus pattern (29 bp):
TTAAATATGTCCTAATTAGTTCAAGAGTT
Found at i:50006644 original size:19 final size:20
Alignment explanation
Indices: 50006629--50006667 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
50006619 TGACACAGGC
50006629 GTGTGT-AGCTTCCACATGG
1 GTGTGTAAGCTTCCACATGG
*
50006648 GTGTGTAAGCTTTCACATGG
1 GTGTGTAAGCTTCCACATGG
50006668 CCTAGGCACT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.18, C:0.18, G:0.31, T:0.33
Consensus pattern (20 bp):
GTGTGTAAGCTTCCACATGG
Found at i:50013936 original size:31 final size:31
Alignment explanation
Indices: 50013729--50013940 Score: 145
Period size: 31 Copynumber: 6.8 Consensus size: 31
50013719 ATGTGTGATA
* ** *
50013729 GAGGCATGATGGGATCACCTCGCAAGGTGGT
1 GAGGCGTGATGGGATCACCTCGTGAGATGGT
* * * ***
50013760 AATGTGTGATGGGATCACCTAACGAGATGGT
1 GAGGCGTGATGGGATCACCTCGTGAGATGGT
* ** * * * * *
50013791 AAGGCACGGTGGGGTTACCTCATGAGGTGGT
1 GAGGCGTGATGGGATCACCTCGTGAGATGGT
* * *
50013822 GAGGTGTGATGGGATCACTTAGTGAGATGGT
1 GAGGCGTGATGGGATCACCTCGTGAGATGGT
* * * * *
50013853 AAGGCGTGGTGGGATCACTTAGCGAGATGGT
1 GAGGCGTGATGGGATCACCTCGTGAGATGGT
* * * * *
50013884 GTGGCATGGTGAGATCGCCTCGTGAGATGGT
1 GAGGCGTGATGGGATCACCTCGTGAGATGGT
50013915 GAGGCGTGATGGGATCACCTCGTGAG
1 GAGGCGTGATGGGATCACCTCGTGAG
50013941 TTTACCCTTA
Statistics
Matches: 135, Mismatches: 46, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
31 135 1.00
ACGTcount: A:0.22, C:0.15, G:0.40, T:0.24
Consensus pattern (31 bp):
GAGGCGTGATGGGATCACCTCGTGAGATGGT
Found at i:50013940 original size:93 final size:93
Alignment explanation
Indices: 50013729--50013940 Score: 235
Period size: 93 Copynumber: 2.3 Consensus size: 93
50013719 ATGTGTGATA
* ** * * *
50013729 GAGGCATGATGGGATCACCTCGCAAGGTGGTAATGTGTGATGGGATCACCTAACGAGATGGTAAG
1 GAGGCGTGATGGGATCACCTCGTGAGATGGTAAGGCGTGATGGGATCACCTAACGAGATGGTAAG
* * * *
50013794 GCACGGTGGGGTTACCTCATGAGGTGGT
66 GCACGGTGAGATCACCTCATGAGATGGT
* * * * * * **
50013822 GAGGTGTGATGGGATCACTTAGTGAGATGGTAAGGCGTGGTGGGATCACTTAGCGAGATGGTGTG
1 GAGGCGTGATGGGATCACCTCGTGAGATGGTAAGGCGTGATGGGATCACCTAACGAGATGGTAAG
* * *
50013887 GCATGGTGAGATCGCCTCGTGAGATGGT
66 GCACGGTGAGATCACCTCATGAGATGGT
50013915 GAGGCGTGATGGGATCACCTCGTGAG
1 GAGGCGTGATGGGATCACCTCGTGAG
50013941 TTTACCCTTA
Statistics
Matches: 95, Mismatches: 24, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
93 95 1.00
ACGTcount: A:0.22, C:0.15, G:0.40, T:0.24
Consensus pattern (93 bp):
GAGGCGTGATGGGATCACCTCGTGAGATGGTAAGGCGTGATGGGATCACCTAACGAGATGGTAAG
GCACGGTGAGATCACCTCATGAGATGGT
Found at i:50024537 original size:19 final size:19
Alignment explanation
Indices: 50024513--50024553 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
50024503 CCCTGCAGTT
* **
50024513 TGAAAATTTTATCTGTTTC
1 TGAAAATTGTATAAGTTTC
50024532 TGAAAATTGTATAAGTTTC
1 TGAAAATTGTATAAGTTTC
50024551 TGA
1 TGA
50024554 TTTAGATTCG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.07, G:0.15, T:0.46
Consensus pattern (19 bp):
TGAAAATTGTATAAGTTTC
Found at i:50026520 original size:28 final size:28
Alignment explanation
Indices: 50026485--50026552 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 28
50026475 AACAAGTTCG
50026485 CACACTTAGTGC-TTA-ATATTCAAACTCA
1 CACACTTAGTGCTTTACA-ATT-AAACTCA
* *
50026513 CGCACTTAGTGCTTTACAATTAAACTCG
1 CACACTTAGTGCTTTACAATTAAACTCA
50026541 CACACTTAGTGC
1 CACACTTAGTGC
50026553 CAATCTCATT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
28 28 0.80
29 6 0.17
30 1 0.03
ACGTcount: A:0.31, C:0.26, G:0.12, T:0.31
Consensus pattern (28 bp):
CACACTTAGTGCTTTACAATTAAACTCA
Found at i:50030703 original size:53 final size:53
Alignment explanation
Indices: 50030640--50030772 Score: 151
Period size: 53 Copynumber: 2.5 Consensus size: 53
50030630 TAGATCGGCT
* * * *
50030640 AGCTACAAGATTATGAAAATCTTGTAAGCAAAAGGTTGCGATCTTAAATCG-TA
1 AGCTGCAAGATTCTGAAAATCTTGTAAG-AAAAGGTTGCGATCATAAATCGACA
* * * *
50030693 AGCTGCAAGATTCTGAAAACCTTGTAAGTATAGGTTGCGATCATAAATTGACA
1 AGCTGCAAGATTCTGAAAATCTTGTAAGAAAAGGTTGCGATCATAAATCGACA
* **
50030746 AACTGCAAGATTCCAAAAATCTTGTAA
1 AGCTGCAAGATTCTGAAAATCTTGTAA
50030773 AAGGACACGA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
52 18 0.27
53 49 0.73
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (53 bp):
AGCTGCAAGATTCTGAAAATCTTGTAAGAAAAGGTTGCGATCATAAATCGACA
Found at i:50033704 original size:29 final size:28
Alignment explanation
Indices: 50033662--50033727 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
50033652 ACCTATAACG
* *
50033662 CATACATATTATATATAATAAAACCTACA
1 CATATATATTATATATAACAAAACC-ACA
* * *
50033691 CATATATATTATATGTAGCAAAACCACG
1 CATATATATTATATATAACAAAACCACA
50033719 CATATATAT
1 CATATATAT
50033728 ATGTACTGTG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 11 0.34
29 21 0.66
ACGTcount: A:0.47, C:0.17, G:0.05, T:0.32
Consensus pattern (28 bp):
CATATATATTATATATAACAAAACCACA
Found at i:50033805 original size:32 final size:33
Alignment explanation
Indices: 50033756--50033831 Score: 118
Period size: 32 Copynumber: 2.3 Consensus size: 33
50033746 AGACCCACAC
50033756 ATATATATTATACATATAACACCCATGCACCCAA
1 ATATATATTATA-ATATAACACCCATGCACCCAA
* *
50033790 ATATATATTAT-ATATAACACCCATGCACGCAT
1 ATATATATTATAATATAACACCCATGCACCCAA
50033822 ATATATATTA
1 ATATATATTA
50033832 AAAACCTCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
32 29 0.73
34 11 0.28
ACGTcount: A:0.43, C:0.21, G:0.04, T:0.32
Consensus pattern (33 bp):
ATATATATTATAATATAACACCCATGCACCCAA
Found at i:50034359 original size:11 final size:11
Alignment explanation
Indices: 50034343--50034374 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
50034333 TTCTATTTAG
50034343 TTAAAAATAGA
1 TTAAAAATAGA
*
50034354 TTAAAAATAAA
1 TTAAAAATAGA
50034365 TTAAAAATAG
1 TTAAAAATAG
50034375 TAAGTATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.66, C:0.00, G:0.06, T:0.28
Consensus pattern (11 bp):
TTAAAAATAGA
Found at i:50035353 original size:46 final size:45
Alignment explanation
Indices: 50035202--50035358 Score: 136
Period size: 46 Copynumber: 3.5 Consensus size: 45
50035192 TACAATAGAT
*
50035202 TTATTAT-ATAAATTATTTTAAATTATATAAATTCATATAAGA-AA
1 TTATTATAAT-AATTATTTTAAATTATACAAATTCATATAAGATAA
* *
50035246 TTTATTATCAATAATT-TTATGAAATTATATC---TT-AT-TAA-ATTA
1 -TTATTAT-AATAATTATT-TTAAATTATA-CAAATTCATATAAGATAA
50035288 -TATGTAATAATAATTATTTTAAATTATACAAATTCATATAAGATAA
1 TTAT-T-ATAATAATTATTTTAAATTATACAAATTCATATAAGATAA
*
50035334 TTATTAGTTATAATTATTTTAAATT
1 TTATTA-TAATAATTATTTTAAATT
50035359 TTATTAAATC
Statistics
Matches: 90, Mismatches: 6, Indels: 31
0.71 0.05 0.24
Matches are distributed among these distances:
40 4 0.04
41 18 0.20
42 8 0.09
43 4 0.04
44 4 0.04
45 13 0.14
46 34 0.38
47 5 0.06
ACGTcount: A:0.45, C:0.03, G:0.03, T:0.48
Consensus pattern (45 bp):
TTATTATAATAATTATTTTAAATTATACAAATTCATATAAGATAA
Found at i:50035510 original size:16 final size:16
Alignment explanation
Indices: 50035489--50035530 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
50035479 TTATTAAATT
*
50035489 ATATATTTTAATTATA
1 ATATATTTTAATAATA
50035505 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
50035520 AT-TATGTTTAA
1 ATATAT-TTTAA
50035531 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:50035515 original size:15 final size:15
Alignment explanation
Indices: 50035480--50035521 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
50035470 TTAAGAATTT
*
50035480 TATTAAATTAT-ATA
1 TATTTAATTATAATA
50035494 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
50035508 TATTTAATAATAAT
1 TATTTAATTATAAT
50035522 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:50035721 original size:44 final size:45
Alignment explanation
Indices: 50035672--50035766 Score: 138
Period size: 45 Copynumber: 2.1 Consensus size: 45
50035662 TTACACCTCT
* *
50035672 ATTACATTCAACCAAACA-CAGTTTTACTATTACGCCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
** *
50035716 ATTACATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCC
1 ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
50035761 ATTACA
1 ATTACA
50035767 CCTCTAATCC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.35
Consensus pattern (45 bp):
ATTACATTCAACCAAACAGCAGATTTACTATTACACCTCTATTCC
Found at i:50035766 original size:16 final size:16
Alignment explanation
Indices: 50035747--50035814 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
50035737 GATTTGCTAT
* *
50035747 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
50035763 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
50035779 TACACATCTAATCCAA
1 TACACCTCTAATCCAA
50035795 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
50035811 TACA
1 TACA
50035815 GCGAACCAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.37, C:0.35, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:50037186 original size:2 final size:2
Alignment explanation
Indices: 50037179--50037208 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
50037169 CAATGGATCC
50037179 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50037209 TAGGTTGTGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:50040728 original size:31 final size:31
Alignment explanation
Indices: 50040693--50040751 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
50040683 GCCTAATTGG
** *
50040693 CCAGCCCATGTGGTCCACACGGCCTACCTAA
1 CCAGCCCATGTGCCCCACACGACCTACCTAA
50040724 CCAGCCCATGTGCCCCACACGACCTACC
1 CCAGCCCATGTGCCCCACACGACCTACC
50040752 CAAGTTGCCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.22, C:0.47, G:0.17, T:0.14
Consensus pattern (31 bp):
CCAGCCCATGTGCCCCACACGACCTACCTAA
Found at i:50040977 original size:39 final size:39
Alignment explanation
Indices: 50040874--50040981 Score: 130
Period size: 40 Copynumber: 2.7 Consensus size: 39
50040864 CATTTGGATA
*
50040874 AAAAATGGCGCTAAAGATCGAGCATTAGCGGAGCTTTTTG
1 AAAAATGCCGCTAAAGATCGAGCATTAGCGGA-CTTTTTG
* *
50040914 GAAAACGCCGCTAAAGATCGAGCATTAGCGG-CATTTTATG
1 AAAAATGCCGCTAAAGATCGAGCATTAGCGGAC-TTTT-TG
* *
50040954 AAAAATGCCGCTAAAAAT-AAGCATTAGC
1 AAAAATGCCGCTAAAGATCGAGCATTAGC
50040982 TGCGTTTTCC
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
38 1 0.02
39 13 0.22
40 45 0.76
ACGTcount: A:0.37, C:0.18, G:0.23, T:0.22
Consensus pattern (39 bp):
AAAAATGCCGCTAAAGATCGAGCATTAGCGGACTTTTTG
Found at i:50041104 original size:41 final size:41
Alignment explanation
Indices: 50041047--50041338 Score: 338
Period size: 41 Copynumber: 7.1 Consensus size: 41
50041037 GCTTTCGGGT
*
50041047 GCTTTAGCGGTGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
* *
50041088 GCTTTAGCGGCGTTTTTGAGAAAGTGCCGCTAATGCTTAGG
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
* *
50041129 GCTTTAGCGGCGTTTTTGAGAAAGCACCGCTAATGCTCACG
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
* * ** * *
50041170 GCTTTAGCGGCATTTTTGATAAAGCGAAGCTAATGCTAATG
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
* * *
50041211 GCTTTAGCGGCGTTTTTGAGGAAGCACTGCTAATGCTCAGG
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
* * *
50041252 GCTTTAGCAGCGTTTTTGAGAAAGCGCCGCGAATTCTCTA--
1 GCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTC-AGG
** * * *
50041292 TTTTTAGCGGCGTTTTCT-AAAAAACGCCGCTAATTCTCAGG
1 GCTTTAGCGGCGTTTT-TGAGAAAGCGCCGCTAATGCTCAGG
*
50041333 GATTTA
1 GCTTTA
50041339 AAATAATTTA
Statistics
Matches: 211, Mismatches: 36, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
39 1 0.00
40 30 0.14
41 179 0.85
42 1 0.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (41 bp):
GCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGG
Found at i:50041929 original size:14 final size:15
Alignment explanation
Indices: 50041899--50041936 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
50041889 AATAATTATA
*
50041899 TATGGATTTAGGGAT
1 TATGGATTTAGGCAT
50041914 TATGGA-TTAGGCAT
1 TATGGATTTAGGCAT
50041928 TATGG-TTTA
1 TATGGATTTA
50041937 AGAGTTGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.26, C:0.03, G:0.29, T:0.42
Consensus pattern (15 bp):
TATGGATTTAGGCAT
Found at i:50042470 original size:15 final size:15
Alignment explanation
Indices: 50042452--50042494 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
50042442 ACTATTTTAA
*
50042452 GGTTTATGGATTATG
1 GGTTTATGGATTATC
*
50042467 GGTTTAAGGATTA-C
1 GGTTTATGGATTATC
*
50042481 GGTTTATGGTTTAT
1 GGTTTATGGATTAT
50042495 TGTTTAAGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.21, C:0.02, G:0.30, T:0.47
Consensus pattern (15 bp):
GGTTTATGGATTATC
Found at i:50042472 original size:22 final size:21
Alignment explanation
Indices: 50042447--50042493 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
50042437 GAGTTACTAT
* *
50042447 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGATTACGGATTAT-GG
*
50042469 TTTAAGGATTACGGTTTATGG
1 TTTAAGGATTACGGATTATGG
50042490 TTTA
1 TTTA
50042494 TTGTTTAAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 6 0.27
22 16 0.73
ACGTcount: A:0.23, C:0.02, G:0.28, T:0.47
Consensus pattern (21 bp):
TTTAAGGATTACGGATTATGG
Found at i:50042518 original size:64 final size:64
Alignment explanation
Indices: 50042447--50042568 Score: 163
Period size: 64 Copynumber: 1.9 Consensus size: 64
50042437 GAGTTACTAT
* * * *
50042447 TTTAAGGTTTATGGATTATGGGTTTAAGGATTACGGTTTATGGTTTATTGTTTAAGGGTTGAGA
1 TTTAAGGTTTAGGGATTAAGGGTTTAAGGATTACGGTTTATGATTTATGGTTTAAGGGTTGAGA
* * * * *
50042511 TTTAAGGTTTAGGGGTTAAGGGTTTAGGGGTTATGTTTTATGATTTATGGTTTAAGGG
1 TTTAAGGTTTAGGGATTAAGGGTTTAAGGATTACGGTTTATGATTTATGGTTTAAGGG
50042569 ATAAGGGTTT
Statistics
Matches: 49, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
64 49 1.00
ACGTcount: A:0.22, C:0.01, G:0.32, T:0.45
Consensus pattern (64 bp):
TTTAAGGTTTAGGGATTAAGGGTTTAAGGATTACGGTTTATGATTTATGGTTTAAGGGTTGAGA
Found at i:50042536 original size:15 final size:14
Alignment explanation
Indices: 50042512--50042543 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
50042502 GGGTTGAGAT
50042512 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGG
50042526 TTAAGGGTTTAGGGG
1 TTAA-GGTTTAGGGG
50042541 TTA
1 TTA
50042544 TGTTTTATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.24
15 13 0.76
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.38
Consensus pattern (14 bp):
TTAAGGTTTAGGGG
Found at i:50042587 original size:7 final size:7
Alignment explanation
Indices: 50042447--50042587 Score: 50
Period size: 7 Copynumber: 19.7 Consensus size: 7
50042437 GAGTTACTAT
*
50042447 TTTAAGG
1 TTTAGGG
*
50042454 TTTATGG
1 TTTAGGG
*
50042461 ATTATGGG
1 TTTA-GGG
*
50042469 TTTAAGG
1 TTTAGGG
* *
50042476 ATTACGG
1 TTTAGGG
*
50042483 TTTATGG
1 TTTAGGG
**
50042490 TTTATTG
1 TTTAGGG
50042497 TTTAAGGG
1 TTT-AGGG
* *
50042505 TTGA-GA
1 TTTAGGG
*
50042511 TTTAAGG
1 TTTAGGG
50042518 TTTAGGGG
1 TTTA-GGG
*
50042526 TTAAGGG
1 TTTAGGG
50042533 TTTAGGG
1 TTTAGGG
* * *
50042540 GTTATGT
1 TTTAGGG
* *
50042547 TTTATGA
1 TTTAGGG
*
50042554 TTTATGG
1 TTTAGGG
50042561 TTTAAGGG
1 TTT-AGGG
* *
50042569 ATAAGGG
1 TTTAGGG
50042576 TTTAGGG
1 TTTAGGG
50042583 TTTAG
1 TTTAG
50042588 ATTAATTAGT
Statistics
Matches: 99, Mismatches: 30, Indels: 10
0.71 0.22 0.07
Matches are distributed among these distances:
6 4 0.04
7 77 0.78
8 18 0.18
ACGTcount: A:0.23, C:0.01, G:0.33, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:50043309 original size:14 final size:14
Alignment explanation
Indices: 50043290--50043316 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50043280 CCAAAATCGA
50043290 TCCCCCCCAATTTT
1 TCCCCCCCAATTTT
50043304 TCCCCCCCAATTT
1 TCCCCCCCAATTT
50043317 CCCCAAATCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (14 bp):
TCCCCCCCAATTTT
Found at i:50046396 original size:43 final size:43
Alignment explanation
Indices: 50046311--50046401 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
50046301 CATTGAGTTC
* * * * *
50046311 ATTA-CAAGATTTCCTTGATTAAGTAGATGTATTATATCTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAAAGCATTATATCTTTT
* *
50046353 ATTACCAAGATTTACTTGATTAAGAAAAAGCATTGTATTTTTT
1 ATTACCAAGATTTACTTGATTAAGAAAAAGCATTATATCTTTT
50046396 ATTACC
1 ATTACC
50046402 TTGCAATGTG
Statistics
Matches: 41, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 4 0.10
43 37 0.90
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.44
Consensus pattern (43 bp):
ATTACCAAGATTTACTTGATTAAGAAAAAGCATTATATCTTTT
Found at i:50046851 original size:41 final size:41
Alignment explanation
Indices: 50046806--50047043 Score: 210
Period size: 43 Copynumber: 5.7 Consensus size: 41
50046796 AAAGCGCTGT
*
50046806 TAAAGGTCTTGATCTTTAGCGGCGTTTGCGAAAAATGCCGC
1 TAAAGGTCTTGATCTTTAGCGGCGTTTGGGAAAAATGCCGC
* ** *
50046847 TAAAGGTCCTGATCTTTAGCGGCGTTTTTGAAAAAAGCGTCGC
1 TAAAGGTCTTGATCTTTAGCGGCGTTTGGGAAAAATGC--CGC
* * **
50046890 TAAAGGTCTTGAT-TTAAAGCAGCGTTTGTAAAAAATGCCGC
1 TAAAGGTCTTGATCTT-TAGCGGCGTTTGGGAAAAATGCCGC
* * *
50046931 TAAAGGCCTTGA-CTTATAGCGGCGTTTGTGGGAAAAGTGTCGC
1 TAAAGGTCTTGATCTT-TAGCGGCG-TT-TGGGAAAAATGCCGC
* * * * **
50046974 TAAAGGTCCTAACCTATAGCGGCGTTTGTGGTGAAATCGCCGC
1 TAAAGGTCTTGATCTTTAGCGGCGTTTG-GGAAAAAT-GCCGC
* *
50047017 TAAAGGTCATGATCTATAGCGGCGTTT
1 TAAAGGTCTTGATCTTTAGCGGCGTTT
50047044 ATTTCTAAAA
Statistics
Matches: 160, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
41 59 0.37
42 11 0.07
43 88 0.55
44 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (41 bp):
TAAAGGTCTTGATCTTTAGCGGCGTTTGGGAAAAATGCCGC
Found at i:50046915 original size:43 final size:41
Alignment explanation
Indices: 50046776--50047043 Score: 209
Period size: 43 Copynumber: 6.3 Consensus size: 41
50046766 TTTTTGAGAC
* ** *
50046776 CTTTAGCGACGTTTGTGGGAAAAGCGCTGTTAAAGGTCTTGAT
1 CTTTAGCGGCGTTTGTGAAAAAAGC-C-GCTAAAGGTCTTGAT
* * *
50046819 CTTTAGCGGCGTTTGCGAAAAATGCCGCTAAAGGTCCTGAT
1 CTTTAGCGGCGTTTGTGAAAAAAGCCGCTAAAGGTCTTGAT
*
50046860 CTTTAGCGGCGTTTTTGAAAAAAGCGTCGCTAAAGGTCTTGAT
1 CTTTAGCGGCGTTTGTGAAAAAAGC--CGCTAAAGGTCTTGAT
* * *
50046903 -TTAAAGCAGCGTTTGT-AAAAAATGCCGCTAAAGGCCTTGA-
1 CTT-TAGCGGCGTTTGTGAAAAAA-GCCGCTAAAGGTCTTGAT
** * * * *
50046943 CTTATAGCGGCGTTTGTGGGAAAAGTGTCGCTAAAGGTCCTAAC
1 CTT-TAGCGGCGTTTGT--GAAAAAAGCCGCTAAAGGTCTTGAT
* * ** *
50046987 CTATAGCGGCGTTTGTGGTGAAATCGCCGCTAAAGGTCATGAT
1 CTTTAGCGGCGTTTGT-G-AAAAAAGCCGCTAAAGGTCTTGAT
*
50047030 CTATAGCGGCGTTT
1 CTTTAGCGGCGTTT
50047044 ATTTCTAAAA
Statistics
Matches: 184, Mismatches: 31, Indels: 20
0.78 0.13 0.09
Matches are distributed among these distances:
41 63 0.34
42 11 0.06
43 104 0.57
44 6 0.03
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (41 bp):
CTTTAGCGGCGTTTGTGAAAAAAGCCGCTAAAGGTCTTGAT
Found at i:50046917 original size:84 final size:84
Alignment explanation
Indices: 50046776--50047043 Score: 265
Period size: 84 Copynumber: 3.2 Consensus size: 84
50046766 TTTTTGAGAC
* ** *
50046776 CTTTAGCGACGTTTGTGGGAAAAGCG-CTGTTAAAGGTCTTGATCTT-TAGCGGCGTTTGCGAAA
1 CTTTAGCGGCGTTTGTGAAAAAAGCGTC-GCTAAAGGTCTTGAT-TTATAGCGGCGTTTGCGAAA
50046839 AATGCCGCTAAAGGTCCTGAT
64 AATGCCGCTAAAGGTCCTGAT
* * * **
50046860 CTTTAGCGGCGTTTTTGAAAAAAGCGTCGCTAAAGGTCTTGATTTAAAGCAGCGTTTGTAAAAAA
1 CTTTAGCGGCGTTTGTGAAAAAAGCGTCGCTAAAGGTCTTGATTTATAGCGGCGTTTGCGAAAAA
50046925 TGCCGCTAAAGG-CCTTGA-
66 TGCCGCTAAAGGTCC-TGAT
** * * * ** * **
50046943 CTTATAGCGGCGTTTGTGGGAAAAGTGTCGCTAAAGGTCCTAACCTATAGCGGCGTTTGTGGTGA
1 CTT-TAGCGGCGTTTGTGAAAAAAGCGTCGCTAAAGGTCTTGATTTATAGCGGCGTTTG-CGAAA
*
50047008 AATCGCCGCTAAAGGTCATGAT
64 AAT-GCCGCTAAAGGTCCTGAT
*
50047030 CTATAGCGGCGTTT
1 CTTTAGCGGCGTTT
50047044 ATTTCTAAAA
Statistics
Matches: 151, Mismatches: 25, Indels: 14
0.79 0.13 0.07
Matches are distributed among these distances:
83 7 0.05
84 111 0.74
85 5 0.03
86 25 0.17
87 3 0.02
ACGTcount: A:0.25, C:0.18, G:0.28, T:0.29
Consensus pattern (84 bp):
CTTTAGCGGCGTTTGTGAAAAAAGCGTCGCTAAAGGTCTTGATTTATAGCGGCGTTTGCGAAAAA
TGCCGCTAAAGGTCCTGAT
Found at i:50047769 original size:6 final size:6
Alignment explanation
Indices: 50047734--50047811 Score: 66
Period size: 6 Copynumber: 12.2 Consensus size: 6
50047724 TGGTAGAAAG
* * * *
50047734 AAAGAA AAATTAA AAACAA AAGGAA TAAAGAA AAAGAAA GAAAGAA AAACAA
1 AAAGAA AAA-GAA AAAGAA AAAGAA -AAAGAA AAAG-AA -AAAGAA AAAGAA
*
50047786 AAACAA AAAGAA TAAAGAA AAAGAA A
1 AAAGAA AAAGAA -AAAGAA AAAGAA A
50047812 GTGGGAACGT
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
6 36 0.60
7 20 0.33
8 4 0.07
ACGTcount: A:0.78, C:0.04, G:0.13, T:0.05
Consensus pattern (6 bp):
AAAGAA
Found at i:50047795 original size:40 final size:39
Alignment explanation
Indices: 50047728--50047812 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 39
50047718 TATAAATGGT
*
50047728 AGAAAGAAAGAAAAATTAAAAACAAAAGGAATAAAGAAAA
1 AGAAAGAAAGAAAAATCAAAAACAAAA-GAATAAAGAAAA
50047768 AGAAAGAAAGAAAAA-CAAAAACAAAAAGAATAAAGAAAA
1 AGAAAGAAAGAAAAATCAAAAAC-AAAAGAATAAAGAAAA
50047807 AGAAAG
1 AGAAAG
50047813 TGGGAACGTG
Statistics
Matches: 43, Mismatches: 1, Indels: 3
0.91 0.02 0.06
Matches are distributed among these distances:
39 24 0.56
40 19 0.44
ACGTcount: A:0.76, C:0.04, G:0.15, T:0.05
Consensus pattern (39 bp):
AGAAAGAAAGAAAAATCAAAAACAAAAGAATAAAGAAAA
Found at i:50047807 original size:13 final size:13
Alignment explanation
Indices: 50047751--50047810 Score: 68
Period size: 13 Copynumber: 4.6 Consensus size: 13
50047741 AATTAAAAAC
*
50047751 AAAAGGAATAAAG
1 AAAAAGAATAAAG
*
50047764 AAAAAGAAAGAAAG
1 AAAAAG-AATAAAG
* *
50047778 AAAAACAA-AAAC
1 AAAAAGAATAAAG
50047790 AAAAAGAATAAAG
1 AAAAAGAATAAAG
50047803 AAAAAGAA
1 AAAAAGAA
50047811 AGTGGGAACG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
12 10 0.26
13 18 0.46
14 11 0.28
ACGTcount: A:0.78, C:0.03, G:0.15, T:0.03
Consensus pattern (13 bp):
AAAAAGAATAAAG
Found at i:50049911 original size:20 final size:20
Alignment explanation
Indices: 50049881--50049918 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
50049871 AAAAATCGAT
50049881 AAATGATATTTCAGAAAATAA
1 AAATGATATTT-AGAAAATAA
50049902 AAAT-ATATTTAGAAAAT
1 AAATGATATTTAGAAAAT
50049919 TTAATTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 7 0.41
20 6 0.35
21 4 0.24
ACGTcount: A:0.58, C:0.03, G:0.08, T:0.32
Consensus pattern (20 bp):
AAATGATATTTAGAAAATAA
Found at i:50054639 original size:16 final size:16
Alignment explanation
Indices: 50054620--50054657 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
50054610 GTAAAAATAA
50054620 AATAAAGTACTA-AAAT
1 AATAAAGTA-TATAAAT
*
50054636 AATAAAGTATATATAT
1 AATAAAGTATATAAAT
50054652 AATAAA
1 AATAAA
50054658 AAATAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (16 bp):
AATAAAGTATATAAAT
Found at i:50054878 original size:25 final size:26
Alignment explanation
Indices: 50054850--50054907 Score: 66
Period size: 25 Copynumber: 2.3 Consensus size: 26
50054840 AAATGAAATG
50054850 ATAATATATGGAA-AACTTAAAATAA
1 ATAATATATGGAACAACTTAAAATAA
* * *
50054875 ATAAT-TATTGAACAATTTAAAATGA
1 ATAATATATGGAACAACTTAAAATAA
*
50054900 ATATTATA
1 ATAATATA
50054908 AAGTTCAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 6 0.22
25 19 0.70
26 2 0.07
ACGTcount: A:0.55, C:0.03, G:0.07, T:0.34
Consensus pattern (26 bp):
ATAATATATGGAACAACTTAAAATAA
Found at i:50056688 original size:44 final size:44
Alignment explanation
Indices: 50056583--50057558 Score: 333
Period size: 44 Copynumber: 20.7 Consensus size: 44
50056573 CCATCATTTT
* * *
50056583 AATCTGCTCCATTGCAACTTCAGGGAGAT-AGGATTGACTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGG-CTG-CTGTCTTC
* * *
50056628 AATCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGTATTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGCTGTCTTC
* * * ** *
50056672 AATCTGCTCCATTGCAACTTTAGGAAGATAAGATCCGCCATAATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-T--GCTGT--CTTC
* * * * * *
50056726 AATTTGTTCCACTACAACTTCAGGGAAATAAGATCTGCTGTCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-GCTGCTGTCTTC
* * *
50056771 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGCTGTCTTC
* * * * * *
50056815 AATCTGCTTCACTGCAACTTCAAGAAGATAAGATTCGCCGTAACTTCTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-T-GC-TGT--CTTC
** * * *
50056869 AATCTATTCCACTGCAACTTCAGGGA-ATAAGATCCGTTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-GCTGCTGTCTTC
* * *
50056913 AGTGTGCTCCACTGCAACTTCAGGGA-ATAAGGCTAG-TGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGGCT-GCTGTCTTC
* * **
50056956 AATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-T--GCTGT--CTTC
** * * *
50057010 AATCTATTCCACTGCAATTTCAAGGGA-ATAAGATCCGCTGTCTTC
1 AATCTGCTCCACTGCAACTTC-AGGGAGATAAG-GCTGCTGTCTTC
* ** * * * *
50057055 ATTCTGCTCTGCTGTAACTTCAAGGAGATAAGGCTGGTGACTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGCTGTCTTC
* ** * *
50057099 AATCTGCTCCACTGCAACTTCAGGAAGATAAGATCGTCATAATTTTTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG---G-C-T--GCTGT--CTTC
* * * * *
50057152 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCGTTGTCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-GCTGCTGTCTTC
* * ** * * *
50057197 AGTATGCTCCGTTGCAACTTCATGGAGATAAGGCTGGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGCTGTCTTC
* * * ** *
50057241 AATCTGCTTCACTGAAACTTCAGGAAGATAAGATCCGCCATAATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-T--GCTGT--CTTC
* * * * * *
50057295 AATCTGTTCCACTGCAACTTTAGGGAAATAAGATCCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-GCTGCTGTCTTC
* * * * * *
50057340 AGTCTGGTCCGCTGCAACTTTAGGGAGATAAGGCTGGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGCTGTCTTC
* * * * * *
50057384 AATCTGTTCCACTGAAACTTTAGGAAGATAAGATCTGCTGTAATTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG----GCTG----CTGT--CTTC
* ** * * ** *
50057438 AATCTGTTCCACTGCAACGCCAGAGAAATAAGATTTGCTGTCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG-GCTGCTGTCTTC
* * * * *
50057483 AGTCTGCTCCGCTGTAACTTCAGGGAGATAAGGCTGGTGGCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGCTGTCTTC
**
50057527 AATCTGCTCCACTGCAACTTCAGTAAGATAAG
1 AATCTGCTCCACTGCAACTTCAGGGAGATAAG
50057559 ACCCGCCGTA
Statistics
Matches: 675, Mismatches: 192, Indels: 129
0.68 0.19 0.13
Matches are distributed among these distances:
43 29 0.04
44 243 0.36
45 170 0.25
46 5 0.01
47 15 0.02
48 9 0.01
49 7 0.01
50 8 0.01
51 4 0.01
52 10 0.01
53 37 0.05
54 134 0.20
55 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGCTGTCTTC
Found at i:50056842 original size:143 final size:143
Alignment explanation
Indices: 50056580--50057570 Score: 1346
Period size: 143 Copynumber: 7.0 Consensus size: 143
50056570 GATCCATCAT
* * * * * * *
50056580 TTTAATCTGCTCCATTGCAACTTCAGGGAGATAGGAT-TGACTATCTTCAATCTGCTCCGCTGCA
1 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCG-CTGTCTTCAGTCTGCTCCGCTGCA
** * * *
50056644 ACTTCAGGGAGATAAGGCTGGTGTATTCAATCTGCTCCATTGCAACTTTAGGAAGATAAGATCCG
65 ACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCG
50056709 CCATAATTTGTAGC
130 CCATAATTTGTAGC
* * * * *
50056723 TTTAATTTGTTCCACTACAACTTCAGGGAAATAAGATCTGCTGTCTTTAGTCTGCTCCACTGCAA
1 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTGTCTTCAGTCTGCTCCGCTGCAA
* *
50056788 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAAGAAGATAAGATTCGC
66 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGC
* * *
50056853 CGTAACTTCTAGC
131 CATAATTTGTAGC
* * * *
50056866 TTTAATCTATTCCACTGCAACTTCAGGG-AATAAGATCCGTTGTCTTCAGTGTGCTCCACTGCAA
1 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTGTCTTCAGTCTGCTCCGCTGCAA
*
50056930 CTTCAGGGA-ATAAGGCTAGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGC
66 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGC
50056994 CATAATTTGTAGC
131 CATAATTTGTAGC
* * * * * *
50057007 TTCAATCTATTCCACTGCAATTTCAAGGG-AATAAGATCCGCTGTCTTCATTCTGCTCTGCTGTA
1 TTTAATCTGTTCCACTGCAACTTC-AGGGAAATAAGATCCGCTGTCTTCAGTCTGCTCCGCTGCA
* * *
50057071 ACTTCAAGGAGATAAGGCTGGTGACTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGAT-CG
65 ACTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCG
* *
50057135 TCATAATTTTTAGC
130 CCATAATTTGTAGC
* * *
50057149 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCGTTGTCTTCAGTATGCTCCGTTGCAA
1 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTGTCTTCAGTCTGCTCCGCTGCAA
* *
50057214 CTTCATGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGAAACTTCAGGAAGATAAGATCCGC
66 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGC
50057279 CATAATTTGTAGC
131 CATAATTTGTAGC
* * *
50057292 TTTAATCTGTTCCACTGCAACTTTAGGGAAATAAGATCCGCTATCTTCAGTCTGGTCCGCTGCAA
1 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTGTCTTCAGTCTGCTCCGCTGCAA
* * * *
50057357 CTTTAGGGAGATAAGGCTGGTGGCTTCAATCTG-TTCCACTGAAACTTTAGGAAGATAAGATCTG
66 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTT-CACTGCAACTTCAGGAAGATAAGATCCG
**
50057421 CTGTAATTTGTAGC
130 CCATAATTTGTAGC
** * ** * *
50057435 TTTAATCTGTTCCACTGCAACGCCAGAGAAATAAGATTTGCTGTCTTTAGTCTGCTCCGCTGTAA
1 TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTGTCTTCAGTCTGCTCCGCTGCAA
* * *
50057500 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTCCACTGCAACTTCAGTAAGATAAGACCCGC
66 CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGC
*
50057565 CGTAAT
131 CATAAT
50057571 AACTTCAATC
Statistics
Matches: 749, Mismatches: 92, Indels: 14
0.88 0.11 0.02
Matches are distributed among these distances:
141 88 0.12
142 207 0.28
143 451 0.60
144 3 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (143 bp):
TTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATCCGCTGTCTTCAGTCTGCTCCGCTGCAA
CTTCAGGGAGATAAGGCTGGTGGCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCCGC
CATAATTTGTAGC
Found at i:50057930 original size:24 final size:24
Alignment explanation
Indices: 50057903--50057948 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
50057893 TTGCCTCCCA
* *
50057903 CTGTAATCTTCAAGGTTTAATCTG
1 CTGTAATCCTCAAGGTTCAATCTG
50057927 CTGTAATCCTCAAGGTTCAATC
1 CTGTAATCCTCAAGGTTCAATC
50057949 CACTATACTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.26, C:0.22, G:0.15, T:0.37
Consensus pattern (24 bp):
CTGTAATCCTCAAGGTTCAATCTG
Found at i:50058845 original size:48 final size:48
Alignment explanation
Indices: 50058793--50058888 Score: 147
Period size: 48 Copynumber: 2.0 Consensus size: 48
50058783 TTTTTTATAT
** * * *
50058793 TTTTATTTTTTGGACTCAATGCGTCCTTTTCGGGTTTTCACCTTGGTC
1 TTTTATTTTTAAGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
50058841 TTTTATTTTTAAGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
1 TTTTATTTTTAAGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
50058889 CCTTCTCCCT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.14, C:0.22, G:0.19, T:0.46
Consensus pattern (48 bp):
TTTTATTTTTAAGACTCAAAGCGCCCTTTGCGGGTTTTCACCTTGGTC
Found at i:50059856 original size:11 final size:11
Alignment explanation
Indices: 50059836--50059878 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
50059826 GGTTTTTACT
*
50059836 CTTTT-TTTTT
1 CTTTTCTTTTC
50059846 CTTTTCCTTTT-
1 CTTTT-CTTTTC
50059857 CTTTTCTTTTC
1 CTTTTCTTTTC
50059868 CTTTTCTTTTC
1 CTTTTCTTTTC
50059879 ATCATTTTCA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
10 10 0.33
11 16 0.53
12 4 0.13
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (11 bp):
CTTTTCTTTTC
Found at i:50059861 original size:16 final size:16
Alignment explanation
Indices: 50059836--50059878 Score: 77
Period size: 16 Copynumber: 2.7 Consensus size: 16
50059826 GGTTTTTACT
*
50059836 CTTTTTTTTTCTTTTC
1 CTTTTCTTTTCTTTTC
50059852 CTTTTCTTTTCTTTTC
1 CTTTTCTTTTCTTTTC
50059868 CTTTTCTTTTC
1 CTTTTCTTTTC
50059879 ATCATTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (16 bp):
CTTTTCTTTTCTTTTC
Found at i:50059898 original size:6 final size:5
Alignment explanation
Indices: 50059835--50059878 Score: 61
Period size: 5 Copynumber: 8.4 Consensus size: 5
50059825 GGGTTTTTAC
*
50059835 TCTTT TTTTT TCTTT TCCTTT TCTTT TCTTT TCCTTT TCTTT TC
1 TCTTT TCTTT TCTTT T-CTTT TCTTT TCTTT T-CTTT TCTTT TC
50059879 ATCATTTTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 25 0.71
6 10 0.29
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (5 bp):
TCTTT
Found at i:50059948 original size:18 final size:17
Alignment explanation
Indices: 50059905--50059948 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
50059895 TTTTTTTGAA
50059905 TATTTTTTGATTGATTT
1 TATTTTTTGATTGATTT
* *
50059922 TTTTATTTTGATTTATTT
1 TATT-TTTTGATTGATTT
50059940 TGATTTTTT
1 T-ATTTTTT
50059949 TTTGAAAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
17 3 0.14
18 17 0.77
19 2 0.09
ACGTcount: A:0.16, C:0.00, G:0.09, T:0.75
Consensus pattern (17 bp):
TATTTTTTGATTGATTT
Found at i:50059950 original size:10 final size:10
Alignment explanation
Indices: 50059888--50059949 Score: 53
Period size: 10 Copynumber: 6.5 Consensus size: 10
50059878 CATCATTTTC
*
50059888 ATTTTCATTT
1 ATTTTGATTT
50059898 -TTTTGAATATT
1 ATTTTG-AT-TT
*
50059909 -TTTTGATTG
1 ATTTTGATTT
50059918 ATTTT--TTT
1 ATTTTGATTT
50059926 ATTTTGATTT
1 ATTTTGATTT
50059936 ATTTTGATTT
1 ATTTTGATTT
50059946 -TTTT
1 ATTTT
50059950 TTGAAAATCA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
8 7 0.16
9 9 0.20
10 21 0.48
11 7 0.16
ACGTcount: A:0.18, C:0.02, G:0.08, T:0.73
Consensus pattern (10 bp):
ATTTTGATTT
Found at i:50065418 original size:13 final size:12
Alignment explanation
Indices: 50065388--50065443 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
50065378 AATGTGAAAC
*
50065388 AAAAAGAAATTG
1 AAAAAGAAGTTG
50065400 AAAAAGAAGTTG
1 AAAAAGAAGTTG
*
50065412 AAGAAAGAAG-AG
1 AA-AAAGAAGTTG
*
50065424 AAAATG-AGTTAG
1 AAAAAGAAGTT-G
50065436 AAAAAGAA
1 AAAAAGAA
50065444 ACAAAAGAAA
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
10 2 0.06
11 3 0.09
12 22 0.63
13 8 0.23
ACGTcount: A:0.64, C:0.00, G:0.23, T:0.12
Consensus pattern (12 bp):
AAAAAGAAGTTG
Found at i:50069131 original size:16 final size:16
Alignment explanation
Indices: 50069112--50069149 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
50069102 GTAAAAATAA
50069112 AATAAAGTACTA-AAAT
1 AATAAAGTA-TATAAAT
*
50069128 AATAAAGTATATATAT
1 AATAAAGTATATAAAT
50069144 AATAAA
1 AATAAA
50069150 AAATAATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 2 0.10
16 18 0.90
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (16 bp):
AATAAAGTATATAAAT
Found at i:50069365 original size:25 final size:26
Alignment explanation
Indices: 50069337--50069394 Score: 75
Period size: 25 Copynumber: 2.3 Consensus size: 26
50069327 AAATGAAATG
50069337 ATAATATATGGAA-AACTTAAAATAA
1 ATAATATATGGAACAACTTAAAATAA
* * *
50069362 ATAAT-TATTGAACAATTTAAAATGA
1 ATAATATATGGAACAACTTAAAATAA
50069387 ATAATATA
1 ATAATATA
50069395 AAGTTCAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 6 0.21
25 20 0.71
26 2 0.07
ACGTcount: A:0.57, C:0.03, G:0.07, T:0.33
Consensus pattern (26 bp):
ATAATATATGGAACAACTTAAAATAA
Found at i:50072169 original size:45 final size:45
Alignment explanation
Indices: 50072109--50072266 Score: 183
Period size: 45 Copynumber: 3.5 Consensus size: 45
50072099 TGTCATAGCA
* *
50072109 TCTTTCAG-CTATGGTCTTACTCAATCGAATTGTGATGTCATAACG
1 TCTTTCAGTC-ATGGTCTTACTCAATAGAATTGTGATGCCATAACG
* * * * * *
50072154 TCTTTCAATCGTGGTCTTACTCGATAGAATCGTAAAGCCATAACG
1 TCTTTCAGTCATGGTCTTACTCAATAGAATTGTGATGCCATAACG
* * **
50072199 ACTTTCGGTCATGGTCTTACTTGATAGAATTGTGATGCCATAACG
1 TCTTTCAGTCATGGTCTTACTCAATAGAATTGTGATGCCATAACG
*
50072244 TCTTTCAGTCATGGTTTTACTCA
1 TCTTTCAGTCATGGTCTTACTCA
50072267 TTTTTGGTAT
Statistics
Matches: 91, Mismatches: 21, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
45 90 0.99
46 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (45 bp):
TCTTTCAGTCATGGTCTTACTCAATAGAATTGTGATGCCATAACG
Found at i:50077225 original size:12 final size:12
Alignment explanation
Indices: 50077210--50077235 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
50077200 GTGATGGACA
50077210 TTGGACATTTAT
1 TTGGACATTTAT
50077222 TTGGACATTTAT
1 TTGGACATTTAT
50077234 TT
1 TT
50077236 TGGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGGACATTTAT
Found at i:50078741 original size:59 final size:59
Alignment explanation
Indices: 50078670--50078791 Score: 244
Period size: 59 Copynumber: 2.1 Consensus size: 59
50078660 TTGTATGATA
50078670 TGAAATAATGGATATTAATTATTCTATTGATGATGTAAAGTTGTTTGGAAAAATGTTGT
1 TGAAATAATGGATATTAATTATTCTATTGATGATGTAAAGTTGTTTGGAAAAATGTTGT
50078729 TGAAATAATGGATATTAATTATTCTATTGATGATGTAAAGTTGTTTGGAAAAATGTTGT
1 TGAAATAATGGATATTAATTATTCTATTGATGATGTAAAGTTGTTTGGAAAAATGTTGT
50078788 TGAA
1 TGAA
50078792 TTTCGATATT
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 63 1.00
ACGTcount: A:0.36, C:0.02, G:0.20, T:0.42
Consensus pattern (59 bp):
TGAAATAATGGATATTAATTATTCTATTGATGATGTAAAGTTGTTTGGAAAAATGTTGT
Found at i:50082648 original size:39 final size:40
Alignment explanation
Indices: 50082551--50082692 Score: 141
Period size: 40 Copynumber: 3.6 Consensus size: 40
50082541 AATGATGTCT
* * *
50082551 GGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATAACC
* **
50082591 GGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATTTC
1 GGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTATA-ACC
*
50082631 GGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
*
50082670 GGGCTATGTCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTG
50082693 AACGAGTAGC
Statistics
Matches: 86, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
39 33 0.38
40 42 0.49
41 10 0.12
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATAACC
Found at i:50082986 original size:47 final size:47
Alignment explanation
Indices: 50082917--50083084 Score: 255
Period size: 47 Copynumber: 3.6 Consensus size: 47
50082907 AAGGGTTGGT
50082917 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
50082964 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * * *
50083011 AATGTGAAAGTGTATATATGTAACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
50083058 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
50083085 TCCCGAAGGG
Statistics
Matches: 109, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 109 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:50092895 original size:61 final size:61
Alignment explanation
Indices: 50092820--50092945 Score: 252
Period size: 61 Copynumber: 2.1 Consensus size: 61
50092810 TCCTACTATC
50092820 TATAGCAGTCCCTACTCTTAAAGGTTAATACATATTTAAATATGCTCAAACAATTTTGTCT
1 TATAGCAGTCCCTACTCTTAAAGGTTAATACATATTTAAATATGCTCAAACAATTTTGTCT
50092881 TATAGCAGTCCCTACTCTTAAAGGTTAATACATATTTAAATATGCTCAAACAATTTTGTCT
1 TATAGCAGTCCCTACTCTTAAAGGTTAATACATATTTAAATATGCTCAAACAATTTTGTCT
50092942 TATA
1 TATA
50092946 TGTTGCAATA
Statistics
Matches: 65, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (61 bp):
TATAGCAGTCCCTACTCTTAAAGGTTAATACATATTTAAATATGCTCAAACAATTTTGTCT
Found at i:50093005 original size:3 final size:3
Alignment explanation
Indices: 50092997--50093053 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
50092987 AATTTATTTT
50092997 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
50093045 ATA ATA ATA
1 ATA ATA ATA
50093054 GTAACAAATG
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:50093681 original size:14 final size:14
Alignment explanation
Indices: 50093662--50093689 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
50093652 AAGTTAATTT
50093662 CTAATATTATTAGG
1 CTAATATTATTAGG
50093676 CTAATATTATTAGG
1 CTAATATTATTAGG
50093690 TTTGAATATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (14 bp):
CTAATATTATTAGG
Found at i:50110397 original size:50 final size:50
Alignment explanation
Indices: 50110323--50110466 Score: 171
Period size: 50 Copynumber: 2.9 Consensus size: 50
50110313 TTCTGTACTT
** * * ** *
50110323 CCAATGCCATACCCCAAATATGGTCTTACATGGGAATTCTCATATTGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* ** *
50110373 CCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
* *
50110423 CCAATGCCATGTCCCAGATATGGTCTTACTTGGGACCTCTCATA
1 CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATA
50110467 ATCTCAATGA
Statistics
Matches: 78, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
50 78 1.00
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGGTG
Found at i:50118023 original size:49 final size:49
Alignment explanation
Indices: 50117934--50118074 Score: 140
Period size: 49 Copynumber: 2.8 Consensus size: 49
50117924 GGGTCTCTTG
* * *
50117934 TCTCATAATACATGCCAAAGCTATGTCCCAGACATAGTCTTACATGAGATGT
1 TCTCAT-ATAC-TGCCAATGCCATGTCCCAGACATGGTCTTACATGAGA-GT
* * * * *
50117986 TTTC-TATACTGCCAATGCCATATCCCAGATATGGTCTTACGTGGGAGT
1 TCTCATATACTGCCAATGCCATGTCCCAGACATGGTCTTACATGAGAGT
* * *
50118034 TCTCATATCAGTGCCCATGCCATGTCCTAGACATGGTCTTA
1 TCTCATAT-ACTGCCAATGCCATGTCCCAGACATGGTCTTA
50118075 TGGGGGACCT
Statistics
Matches: 73, Mismatches: 14, Indels: 6
0.78 0.15 0.06
Matches are distributed among these distances:
48 5 0.07
49 33 0.45
50 31 0.42
51 1 0.01
52 3 0.04
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (49 bp):
TCTCATATACTGCCAATGCCATGTCCCAGACATGGTCTTACATGAGAGT
Found at i:50118070 original size:50 final size:50
Alignment explanation
Indices: 50117946--50118187 Score: 173
Period size: 50 Copynumber: 4.7 Consensus size: 50
50117936 TCATAATACA
* * * * ** * *
50117946 TGCCAAAGCTATGTCCCAGACATAGTCTTACATGAGATGTTTTC-TAT-AC
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATATCAG
* * * **
50117995 TGCCAATGCCATATCCCAGATATGGTCTTACGTGGGAGTTCTCATATCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
* * *** * *
50118045 TGCCCATGCCATGTCCTAGACATGGTCTTATGGGGGACCTCTCATTTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
** * * *
50118095 TGCCAACACCATGTCCTAGACATAGTCTTACATAGGACCTCTCATAATCTCAATG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC-A-G
*
50118150 ATGCCTATGCCATGTCCCAGACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
50118188 TCTCATTCCC
Statistics
Matches: 150, Mismatches: 35, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
48 5 0.03
49 33 0.22
50 78 0.52
53 2 0.01
55 1 0.01
56 31 0.21
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAG
Found at i:50119718 original size:15 final size:15
Alignment explanation
Indices: 50119662--50119722 Score: 52
Period size: 15 Copynumber: 3.9 Consensus size: 15
50119652 TTGTGATGTG
50119662 TTGATATTATGTGAT-
1 TTGATA-TATGTGATA
* * *
50119677 TGTGATGTTTGTGAAAA
1 T-TGATATATGTG-ATA
50119694 TTGCATATATGTGATA
1 TTG-ATATATGTGATA
50119710 TTGATATATGTGA
1 TTGATATATGTGA
50119723 AGATCTCATT
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
15 16 0.44
16 12 0.33
17 8 0.22
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.46
Consensus pattern (15 bp):
TTGATATATGTGATA
Found at i:50137220 original size:20 final size:20
Alignment explanation
Indices: 50137195--50137232 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
50137185 TGTTATTTTA
*
50137195 TTAATAAAATAAATAAAAGG
1 TTAATAAAATAAAGAAAAGG
50137215 TTAATAAAATAAAGAAAA
1 TTAATAAAATAAAGAAAA
50137233 AAATGATAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (20 bp):
TTAATAAAATAAAGAAAAGG
Found at i:50139553 original size:31 final size:30
Alignment explanation
Indices: 50139492--50139554 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
50139482 GCTTTTTGAA
* * *
50139492 AATATTTACAAAAAGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAAATTTT
50139522 AATATTTACAAAAA-AGAGCAACCAAAATTTT
1 AATATTTACAAAAAGAG-GC-ACCAAAATTTT
50139553 AA
1 AA
50139555 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 2 0.07
30 16 0.57
31 10 0.36
ACGTcount: A:0.51, C:0.11, G:0.08, T:0.30
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAAATTTT
Found at i:50155228 original size:79 final size:82
Alignment explanation
Indices: 50155117--50155301 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
50155107 GCTACTCGTT
* * *
50155117 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
50155180 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
50155197 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
50155260 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
50155277 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
50155302 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:50155301 original size:40 final size:40
Alignment explanation
Indices: 50155098--50155301 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
50155088 CGGAATTTAA
** *
50155098 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
50155138 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
50155178 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
50155217 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
50155257 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
50155297 CCGGA
1 CCGGA
50155302 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:50164030 original size:22 final size:21
Alignment explanation
Indices: 50163996--50164038 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
50163986 GGCTGTTAAA
*
50163996 AAAAGGAGCTTAAAGATCATT
1 AAAAGGAGCTTAAAGAGCATT
*
50164017 AAAAGGAGTTTTAAAGAGCATT
1 AAAAGGAG-CTTAAAGAGCATT
50164039 TTATGCCCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.47, C:0.07, G:0.21, T:0.26
Consensus pattern (21 bp):
AAAAGGAGCTTAAAGAGCATT
Found at i:50212720 original size:27 final size:27
Alignment explanation
Indices: 50212689--50212866 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
50212679 TAAATTGTAC
*
50212689 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
50212716 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
50212742 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* *
50212770 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
50212797 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * * *
50212825 GGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
50212852 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50212867 GACTTAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 24 0.19
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:50212750 original size:54 final size:55
Alignment explanation
Indices: 50212689--50212866 Score: 236
Period size: 54 Copynumber: 3.3 Consensus size: 55
50212679 TAAATTGTAC
* **
50212689 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
50212744 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
* *
50212797 AGCACTAAGTGTGCGAGTTTGATTATGTGGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
*
50212852 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50212867 GACTTAATAT
Statistics
Matches: 107, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
53 1 0.01
54 60 0.56
55 46 0.43
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:50214841 original size:141 final size:141
Alignment explanation
Indices: 50214586--50215015 Score: 702
Period size: 141 Copynumber: 3.0 Consensus size: 141
50214576 TGATGCTTAA
* * *
50214586 ATGCTGCCCAAATTGTTATATATATGCTGTCCAAATTTTTGGTGTAAAAATGCTGCTCAATTTGT
1 ATGCTACCCAATTTGTTGTATATATGCTGT-CAAATTTTTGGTGTAAAAATGCTGCTCAATTTGT
*
50214651 TGTATTTATGCTGTCCAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGCTGCTCAA
65 TGTATTTATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGCTGCTCAA
50214716 TTTGGTATATAT
130 TTTGGTATATAT
*
50214728 ATGCTACCCAATTTGTTGTATATATGCTGTCTAATTTTTGGTGTAAAAATGCTGCTCAATTTGTT
1 ATGCTACCCAATTTGTTGTATATATGCTGTCAAATTTTTGGTGTAAAAATGCTGCTCAATTTGTT
*
50214793 GTATTTATGCTACCCAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGCTGCTCAAT
66 GTATTTATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGCTGCTCAAT
50214858 TTGGTATATAT
131 TTGGTATATAT
*
50214869 ATGCTACCCAATTTGTTGTACATATGCTGTCCAAA-TTTTGGTGTAAAAATGCTGCTCAATTTGT
1 ATGCTACCCAATTTGTTGTATATATGCTGT-CAAATTTTTGGTGTAAAAATGCTGCTCAATTTGT
* * *
50214933 TGTATATATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGTGTGAAAATGCTG-TCT
65 TGTATTTATGCTGCCCAAATTGTTGTATATATGCTGTCC-AATTTTGATGTAAAAATGCTGCTC-
* *
50214997 AGTTTGGTATATAA
128 AATTTGGTATATAT
50215011 ATGCT
1 ATGCT
50215016 GTCCAAATTG
Statistics
Matches: 271, Mismatches: 14, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
141 205 0.76
142 66 0.24
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (141 bp):
ATGCTACCCAATTTGTTGTATATATGCTGTCAAATTTTTGGTGTAAAAATGCTGCTCAATTTGTT
GTATTTATGCTGCCCAAATTGTTGTATATATGCTGTCCAATTTTGATGTAAAAATGCTGCTCAAT
TTGGTATATAT
Found at i:50214976 original size:23 final size:23
Alignment explanation
Indices: 50214586--50214973 Score: 291
Period size: 23 Copynumber: 16.5 Consensus size: 23
50214576 TGATGCTTAA
* * *
50214586 ATGCTGCCCAAATTGTTATATAT
1 ATGCTGTCCAATTTGTTGTATAT
* * *
50214609 ATGCTGTCCAAATTTTTGGTGTAAAA
1 ATGCTGTCC-AA--TTTGTTGTATAT
*
50214635 ATGCTG-CTCAATTTGTTGTATTT
1 ATGCTGTC-CAATTTGTTGTATAT
*
50214658 ATGCTGTCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
* * *
50214681 ATGCTGTCCAATTTTGATGTAAAA
1 ATGCTGTCCAA-TTTGTTGTATAT
* *
50214705 ATGCTG-CTCAATTTGGTATATAT
1 ATGCTGTC-CAATTTGTTGTATAT
**
50214728 ATGCTACCCAATTTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
* * * *
50214751 ATGCTGTCTAATTTTTGGTGTAAAA
1 ATGCTGTCCAA--TTTGTTGTATAT
*
50214776 ATGCTG-CTCAATTTGTTGTATTT
1 ATGCTGTC-CAATTTGTTGTATAT
** *
50214799 ATGCTACCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
* * *
50214822 ATGCTGTCCAATTTTGATGTAAAA
1 ATGCTGTCCAA-TTTGTTGTATAT
* *
50214846 ATGCTG-CTCAATTTGGTATATAT
1 ATGCTGTC-CAATTTGTTGTATAT
** *
50214869 ATGCTACCCAATTTGTTGTACAT
1 ATGCTGTCCAATTTGTTGTATAT
* * *
50214892 ATGCTGTCCAAATTTTGGTGTAAAA
1 ATGCTGTCC-AA-TTTGTTGTATAT
50214917 ATGCTG-CTCAATTTGTTGTATAT
1 ATGCTGTC-CAATTTGTTGTATAT
* *
50214940 ATGCTGCCCAAATTGTTGTATAT
1 ATGCTGTCCAATTTGTTGTATAT
50214963 ATGCTGTCCAA
1 ATGCTGTCCAA
50214974 ATTTTGGTGT
Statistics
Matches: 285, Mismatches: 61, Indels: 38
0.74 0.16 0.10
Matches are distributed among these distances:
23 188 0.66
24 47 0.16
25 36 0.13
26 14 0.05
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (23 bp):
ATGCTGTCCAATTTGTTGTATAT
Found at i:50215015 original size:71 final size:71
Alignment explanation
Indices: 50214586--50215030 Score: 626
Period size: 71 Copynumber: 6.3 Consensus size: 71
50214576 TGATGCTTAA
* *
50214586 ATGCTGCCCAAATTGTTATATATATGCTGTCCAAATTTTTGGTGTAAAAATGCTGCTCAATTTGT
1 ATGCTGCCCAAATTGTTGTATATATGCTGTCCAAA-TTTTGGTGTAAAAATGCTGCTCAATTTGG
* *
50214651 TGTATTT
65 TATATAT
* *
50214658 ATGCTGTCCAAATTGTTGTATATATGCTGTCC-AATTTTGATGTAAAAATGCTGCTCAATTTGGT
1 ATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCTCAATTTGGT
50214722 ATATAT
66 ATATAT
* * * * *
50214728 ATGCTACCCAATTTGTTGTATATATGCTGTCTAATTTTTGGTGTAAAAATGCTGCTCAATTTGTT
1 ATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCTCAATTTGGT
* *
50214793 GTATTT
66 ATATAT
* *
50214799 ATGCTACCCAAATTGTTGTATATATGCTGTCC-AATTTTGATGTAAAAATGCTGCTCAATTTGGT
1 ATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCTCAATTTGGT
50214863 ATATAT
66 ATATAT
* * * *
50214869 ATGCTACCCAATTTGTTGTACATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCTCAATTTGTT
1 ATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCTCAATTTGGT
*
50214934 GTATAT
66 ATATAT
* *
50214940 ATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGTGTGAAAATGCTG-TCTAGTTTGG
1 ATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCTC-AATTTGG
*
50215004 TATATAA
65 TATATAT
* *
50215011 ATGCTGTCCAAATTGATGTA
1 ATGCTGCCCAAATTGTTGTA
50215031 AAAGAGCTGT
Statistics
Matches: 333, Mismatches: 37, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
70 125 0.38
71 178 0.53
72 30 0.09
ACGTcount: A:0.27, C:0.14, G:0.18, T:0.42
Consensus pattern (71 bp):
ATGCTGCCCAAATTGTTGTATATATGCTGTCCAAATTTTGGTGTAAAAATGCTGCTCAATTTGGT
ATATAT
Found at i:50216284 original size:41 final size:41
Alignment explanation
Indices: 50216222--50216330 Score: 137
Period size: 41 Copynumber: 2.6 Consensus size: 41
50216212 GATTAGTATC
* *
50216222 GTGGCATGGTTTACATGCAATCAATATGTACGATAATAATTA
1 GTGGCAT-GATTACATGCAATCAATATGTACGATAACAATTA
* * *
50216264 GTGGCATGATTATATGCAATCAGTATGTACGGTAACAATTA
1 GTGGCATGATTACATGCAATCAATATGTACGATAACAATTA
* * *
50216305 GTGACATGCTTACATGCAATTAATAT
1 GTGGCATGATTACATGCAATCAATAT
50216331 ACAATATTAA
Statistics
Matches: 57, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
41 50 0.88
42 7 0.12
ACGTcount: A:0.35, C:0.13, G:0.19, T:0.33
Consensus pattern (41 bp):
GTGGCATGATTACATGCAATCAATATGTACGATAACAATTA
Found at i:50219335 original size:21 final size:22
Alignment explanation
Indices: 50219310--50219354 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
50219300 TTTTATAATT
50219310 AATTA-CTAATATAATTTTAAA
1 AATTATCTAATATAATTTTAAA
* * *
50219331 AATTATTTTATATATTTTTAAA
1 AATTATCTAATATAATTTTAAA
50219353 AA
1 AA
50219355 ATATAAGCCT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (22 bp):
AATTATCTAATATAATTTTAAA
Found at i:50219789 original size:46 final size:46
Alignment explanation
Indices: 50219717--50219848 Score: 201
Period size: 46 Copynumber: 2.9 Consensus size: 46
50219707 GAAAAGAAAA
* **
50219717 ACACTAAATTATAGCAATAAATTTATTTATAAATCATAAACATTAT
1 ACACAAAATTATAATAATAAATTTATTTATAAATCATAAACATTAT
* *
50219763 ACACAAAATTATAATAATAAATTTATTCATAAATCATAATCATTAT
1 ACACAAAATTATAATAATAAATTTATTTATAAATCATAAACATTAT
* *
50219809 ACACAAAATTATAATACTAAATTTATTTATAAATAATAAA
1 ACACAAAATTATAATAATAAATTTATTTATAAATCATAAA
50219849 TTATAAACTC
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.53, C:0.10, G:0.01, T:0.36
Consensus pattern (46 bp):
ACACAAAATTATAATAATAAATTTATTTATAAATCATAAACATTAT
Found at i:50219822 original size:21 final size:21
Alignment explanation
Indices: 50219747--50219823 Score: 55
Period size: 21 Copynumber: 3.5 Consensus size: 21
50219737 ATTTATTTAT
*
50219747 AAATCATAAACATTATACACA
1 AAATCATAATCATTATACACA
* * * **
50219768 AAATTATAATAATAAATTTATTCA
1 AAATCATAATCAT---TATACACA
50219792 TAAATCATAATCATTATACACA
1 -AAATCATAATCATTATACACA
*
50219814 AAATTATAAT
1 AAATCATAAT
50219824 ACTAAATTTA
Statistics
Matches: 40, Mismatches: 12, Indels: 8
0.67 0.20 0.13
Matches are distributed among these distances:
21 19 0.47
22 5 0.12
24 5 0.12
25 11 0.28
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.34
Consensus pattern (21 bp):
AAATCATAATCATTATACACA
Found at i:50222426 original size:50 final size:50
Alignment explanation
Indices: 50222315--50222430 Score: 135
Period size: 50 Copynumber: 2.3 Consensus size: 50
50222305 GGGAATGAGG
* * * **
50222315 TCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCAAGATGAGAGG
1 TCCCATGTAAGACCATGTCTAAGACATGGCATGGGCACCAAGATGAGAAC
* ***
50222365 TCTCC-TATAAGACCATGTCTAAGACATGGCATGGGCACCGTTATGAGAAC
1 TC-CCATGTAAGACCATGTCTAAGACATGGCATGGGCACCAAGATGAGAAC
50222415 TCCCATGTAAGACCAT
1 TCCCATGTAAGACCAT
50222431 ATCTGGGATA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
49 2 0.04
50 50 0.93
51 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTAAGACATGGCATGGGCACCAAGATGAGAAC
Found at i:50230354 original size:20 final size:21
Alignment explanation
Indices: 50230319--50230357 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
50230309 CAGTTCGTTG
50230319 AGCTCAATTCAGCTCATTTCC
1 AGCTCAATTCAGCTCATTTCC
*
50230340 AGCTC-ATTGAGCTCATTT
1 AGCTCAATTCAGCTCATTT
50230358 GCTTGTTTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.23, C:0.28, G:0.13, T:0.36
Consensus pattern (21 bp):
AGCTCAATTCAGCTCATTTCC
Found at i:50230765 original size:13 final size:13
Alignment explanation
Indices: 50230747--50230772 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
50230737 TGTGTCCTAA
50230747 TATGAATTAAATT
1 TATGAATTAAATT
50230760 TATGAATTAAATT
1 TATGAATTAAATT
50230773 GCTTTCAGGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (13 bp):
TATGAATTAAATT
Found at i:50260672 original size:7 final size:6
Alignment explanation
Indices: 50260655--50260697 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
50260645 CAAAAATAGG
* *
50260655 AGAAAA AGAAAGA AGAAAC AGAAAA A-AAAA AGAAAA GGAAAA A
1 AGAAAA AGAAA-A AGAAAA AGAAAA AGAAAA AGAAAA AGAAAA A
50260698 TGAGAGGTCA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
5 5 0.16
6 20 0.65
7 6 0.19
ACGTcount: A:0.79, C:0.02, G:0.19, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:50260697 original size:17 final size:19
Alignment explanation
Indices: 50260655--50260689 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
50260645 CAAAAATAGG
50260655 AGAAAAAGAAAGAAGAAAC
1 AGAAAAAGAAAGAAGAAAC
50260674 AGAAAAA-AAA-AAGAAA
1 AGAAAAAGAAAGAAGAAA
50260690 AGGAAAAATG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 3 0.19
19 7 0.44
ACGTcount: A:0.80, C:0.03, G:0.17, T:0.00
Consensus pattern (19 bp):
AGAAAAAGAAAGAAGAAAC
Found at i:50262971 original size:44 final size:44
Alignment explanation
Indices: 50262839--50263061 Score: 147
Period size: 44 Copynumber: 5.1 Consensus size: 44
50262829 ACAAACCTTA
*
50262839 CCTCTCTCGGTTGTGGTGGAGCTGGTTGAAGACAACAGATCTTG
1 CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTG
** * * * * * *
50262883 CCT-TC-CTGCAT-TGACAGCGAAGCAGATCGAAGAC-ACAAACCTTG
1 CCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACAACAGATCTTG
50262927 CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTG
1 CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTG
** * * * * * *
50262971 CCT-TC-CTGCAT-TGACAGCGAAGCAGATCGAAGAC-ACAAACCTTG
1 CCTCTCTC-GGTTGTGA-TG-G-AGCTGGTTGAAGACAACAGATCTTG
* *
50263015 CCTCTCTTGGTTGTGATGGAGCTGGTTGAAGACAATAGATCTTG
1 CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTG
50263059 CCT
1 CCT
50263062 TCCTTTATTG
Statistics
Matches: 128, Mismatches: 35, Indels: 32
0.66 0.18 0.16
Matches are distributed among these distances:
42 7 0.05
43 32 0.25
44 50 0.39
45 32 0.25
46 7 0.05
ACGTcount: A:0.24, C:0.24, G:0.26, T:0.26
Consensus pattern (44 bp):
CCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTG
Found at i:50263103 original size:44 final size:44
Alignment explanation
Indices: 50262791--50263105 Score: 134
Period size: 44 Copynumber: 7.2 Consensus size: 44
50262781 GACAATAGAT
* *
50262791 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTTCATTGACAGCGAAGCAGATCGAAGACACAAGC
* * ** * * * * * *
50262835 CTTACC-T-CTCTCGGTTG-TGGTGGAGCTGGTTGAAGACA-ACAGAT
1 CTTGCCTTCCT-TC-ATTGACAGCGAAGCAGATCGAAGACACA-AG-C
* *
50262879 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTTCATTGACAGCGAAGCAGATCGAAGACACAAGC
* ** * * * *
50262923 CTTGCC-T-CTCTCGGTTGTGATG-G-AGCTGGTTGAAGACA-ACAGAT
1 CTTGCCTTCCT-TC-ATTGACA-GCGAAGCAGATCGAAGACACA-AG-C
* *
50262967 CTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAAC
1 CTTGCCTTCCTTCATTGACAGCGAAGCAGATCGAAGACACAAGC
** ** * * * *
50263011 CTTGCC-TCTCTTGGTTGTGATG-G-AGCTGGTTGAAGACA-ATAGAT
1 CTTGCCTTC-CTTCATTGACA-GCGAAGCAGATCGAAGACACA-AG-C
*
50263055 CTTGCCTTCCTTTATTGACAGCGAAGCAGATCGAAGACACAAGC
1 CTTGCCTTCCTTCATTGACAGCGAAGCAGATCGAAGACACAAGC
50263099 CTTGCCT
1 CTTGCCT
50263106 CCCTCGGTTG
Statistics
Matches: 185, Mismatches: 60, Indels: 52
0.62 0.20 0.18
Matches are distributed among these distances:
42 7 0.04
43 49 0.26
44 72 0.39
45 50 0.27
46 7 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (44 bp):
CTTGCCTTCCTTCATTGACAGCGAAGCAGATCGAAGACACAAGC
Found at i:50263152 original size:88 final size:88
Alignment explanation
Indices: 50262698--50263124 Score: 660
Period size: 88 Copynumber: 4.9 Consensus size: 88
50262688 AATGAAGTTG
* * * * * * *
50262698 CAGATCTTGCCTTCCTACATTGACAGTGAAGTAGGTTGAAGATACAAACCTTGCCTCTCTCGATT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTT
* *
50262763 GT-ACCGGAGCTGGTTCAAGACAA
66 GTGA-TGGAGCTGGTTGAAGACAA
* *
50262786 TAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTACCTCTCTCGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTT
*
50262851 GTGGTGGAGCTGGTTGAAGACAA
66 GTGATGGAGCTGGTTGAAGACAA
50262874 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTT
50262939 GTGATGGAGCTGGTTGAAGACAA
66 GTGATGGAGCTGGTTGAAGACAA
*
50262962 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTTGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTT
50263027 GTGATGGAGCTGGTTGAAGACAA
66 GTGATGGAGCTGGTTGAAGACAA
* ** * *
50263050 TAGATCTTGCCTTCCTTTATTGACAGCGAAGCAGATCGAAGACACAAGCCTTGCCTCCCTCGGTT
1 CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTT
50263115 GT-AGTGGAGC
66 GTGA-TGGAGC
50263125 AGATCAAAGA
Statistics
Matches: 315, Mismatches: 22, Indels: 4
0.92 0.06 0.01
Matches are distributed among these distances:
87 1 0.00
88 314 1.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (88 bp):
CAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTT
GTGATGGAGCTGGTTGAAGACAA
Found at i:50264800 original size:3 final size:3
Alignment explanation
Indices: 50264754--50264830 Score: 52
Period size: 3 Copynumber: 25.7 Consensus size: 3
50264744 TTTAGCATTT
* * * *
50264754 TTA TTA TT- TTC TTCA TTA TT- TTA ATA -TA TTA TCA TCTT TTA TTA
1 TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
* *
50264798 TTA TTG TTG TTA TTA TTA GTTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TT
50264831 TCTTCATCTA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
2 6 0.10
3 48 0.80
4 6 0.10
ACGTcount: A:0.26, C:0.05, G:0.04, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:50265167 original size:22 final size:22
Alignment explanation
Indices: 50265139--50265207 Score: 72
Period size: 22 Copynumber: 3.1 Consensus size: 22
50265129 TTTATTGTTT
*
50265139 TTTATGTTCATTTATGTATTTA
1 TTTATGTTCATTTATTTATTTA
50265161 TTTATGTGTTC-TTT-TTTATTTA
1 TTTA--TGTTCATTTATTTATTTA
*
50265183 CTTTA-GTTTATTTATTTATTTA
1 -TTTATGTTCATTTATTTATTTA
50265205 TTT
1 TTT
50265208 GCTATGATTG
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
20 3 0.08
21 6 0.15
22 19 0.47
23 7 0.17
24 5 0.12
ACGTcount: A:0.19, C:0.04, G:0.07, T:0.70
Consensus pattern (22 bp):
TTTATGTTCATTTATTTATTTA
Found at i:50265225 original size:4 final size:4
Alignment explanation
Indices: 50265148--50265207 Score: 52
Period size: 4 Copynumber: 15.0 Consensus size: 4
50265138 TTTTATGTTC
* * * *
50265148 ATTT ATGT ATTT ATTT ATGT -GTT CTTT -TTT ATTT ACTTT AGTTT ATTT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT ATTT A-TTT A-TTT ATTT
50265196 ATTT ATTT ATTT
1 ATTT ATTT ATTT
50265208 GCTATGATTG
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
3 4 0.09
4 34 0.74
5 8 0.17
ACGTcount: A:0.20, C:0.03, G:0.07, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:50265596 original size:108 final size:110
Alignment explanation
Indices: 50265313--50265625 Score: 461
Period size: 111 Copynumber: 2.8 Consensus size: 110
50265303 TCAAAAAAGG
* * * * *
50265313 AAAATTTTTCTAAATGAGGCAATATTTAGCCTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
1 AAAATTTTT-AAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
*
50265378 GGGTGTCGTTTTTTCTCGTTCAACCAAATGACTTAATAACCTTTTA
65 GGGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATAACCTTTTA
* *
50265424 AAAATTTTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAAGATGCCCTAAGGTGCT
1 AAAA-TTTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
* * * *
50265489 GGGTGTCG-TTTTTCTCATTCAATCAAATGGCTTAA-ATCCTTTTA
65 GGGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATAACCTTTTA
*
50265533 AAAA-TTTTAAAATAAGGCAATGTTTTGCATTTGGGAAATTCAAGAAAACATGCCCTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCATTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCT
50265597 GGGTGTCGATTTTTCTCGTTCAACCAAAT
65 GGGTGTCGATTTTTCTCGTTCAACCAAAT
50265626 TGCCAAATAT
Statistics
Matches: 184, Mismatches: 15, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
107 27 0.15
108 37 0.20
109 30 0.16
110 24 0.13
111 61 0.33
112 5 0.03
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (110 bp):
AAAATTTTTAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATGACTTAATAACCTTTTA
Found at i:50268661 original size:2 final size:2
Alignment explanation
Indices: 50268654--50268680 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
50268644 TTCCTTAAAA
50268654 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
50268681 AAGGAAAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:50276700 original size:12 final size:12
Alignment explanation
Indices: 50276683--50276722 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
50276673 TAATACTTCG
50276683 AATTTTTTTTTC
1 AATTTTTTTTTC
50276695 AA-TTTTTTTTC
1 AATTTTTTTTTC
* *
50276706 GATTTTTTTTTG
1 AATTTTTTTTTC
50276718 AATTT
1 AATTT
50276723 CCTCTTCTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
11 10 0.42
12 14 0.58
ACGTcount: A:0.17, C:0.05, G:0.05, T:0.72
Consensus pattern (12 bp):
AATTTTTTTTTC
Found at i:50276702 original size:11 final size:11
Alignment explanation
Indices: 50276686--50276715 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
50276676 TACTTCGAAT
50276686 TTTTTTTTCAA
1 TTTTTTTTCAA
*
50276697 TTTTTTTTCGA
1 TTTTTTTTCAA
50276708 TTTTTTTT
1 TTTTTTTT
50276716 TGAATTTCCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.07, G:0.03, T:0.80
Consensus pattern (11 bp):
TTTTTTTTCAA
Found at i:50288654 original size:6 final size:6
Alignment explanation
Indices: 50288643--50288703 Score: 81
Period size: 6 Copynumber: 10.5 Consensus size: 6
50288633 AGTTTGAGAG
* * *
50288643 AAAAGA AAAAGA AAGAG- AAAAG- AAAGGA AAAGGA AAAAGA AAAAGA
1 AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA AAAAGA
50288689 AAAAGA AAAAGA AAA
1 AAAAGA AAAAGA AAA
50288704 TGAGAAGAAA
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
5 8 0.16
6 42 0.84
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:50288711 original size:17 final size:17
Alignment explanation
Indices: 50288643--50288715 Score: 78
Period size: 17 Copynumber: 4.2 Consensus size: 17
50288633 AGTTTGAGAG
50288643 AAAAGAAAAAG-AAAGA
1 AAAAGAAAAAGAAAAGA
*
50288659 GAAAAG-AAAGGAAAAGGA
1 -AAAAGAAAAAGAAAA-GA
50288677 AAAAGAAAAAGAAAAAGA
1 AAAAGAAAAAG-AAAAGA
* *
50288695 AAAAGAAAATGAGAAGA
1 AAAAGAAAAAGAAAAGA
50288712 AAAA
1 AAAA
50288716 TATTGTTGAA
Statistics
Matches: 48, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
16 4 0.08
17 22 0.46
18 18 0.38
19 4 0.08
ACGTcount: A:0.77, C:0.00, G:0.22, T:0.01
Consensus pattern (17 bp):
AAAAGAAAAAGAAAAGA
Found at i:50297566 original size:30 final size:30
Alignment explanation
Indices: 50297526--50297584 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
50297516 CATGTGACAC
*
50297526 ACACACGGCTATGCGACATGCCCGTGTGTG
1 ACACACGGCTATGCAACATGCCCGTGTGTG
*
50297556 ACACATGGCTATGCAACATGCCCGTGTGT
1 ACACACGGCTATGCAACATGCCCGTGTGT
50297585 CCCCTATAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.22, C:0.29, G:0.27, T:0.22
Consensus pattern (30 bp):
ACACACGGCTATGCAACATGCCCGTGTGTG
Found at i:50298843 original size:19 final size:21
Alignment explanation
Indices: 50298823--50298863 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
50298813 ATTAAAAGAT
50298823 AAAG-ATAAAATAAAGAAATA
1 AAAGTATAAAATAAAGAAATA
50298843 AAAGTTAATAAAATAAAGAAA
1 AAAG-T-ATAAAATAAAGAAA
50298864 AAATAATAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.22
23 14 0.78
ACGTcount: A:0.73, C:0.00, G:0.10, T:0.17
Consensus pattern (21 bp):
AAAGTATAAAATAAAGAAATA
Found at i:50302116 original size:8 final size:8
Alignment explanation
Indices: 50302103--50302131 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
50302093 TATATATACT
50302103 AAATAATA
1 AAATAATA
50302111 AAATAATA
1 AAATAATA
50302119 AAATAATA
1 AAATAATA
50302127 AAATA
1 AAATA
50302132 TCATTTAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAATAATA
Found at i:50305372 original size:28 final size:28
Alignment explanation
Indices: 50305307--50305457 Score: 223
Period size: 28 Copynumber: 5.4 Consensus size: 28
50305297 GAGATTGGCG
* * * *
50305307 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
50305336 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
50305364 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50305392 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
50305420 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
50305447 CTGAGTGTGCG
1 CTAAGTGTGCG
50305458 GACTTAATAT
Statistics
Matches: 115, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 76 0.66
29 15 0.13
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:50314641 original size:28 final size:28
Alignment explanation
Indices: 50314601--50314726 Score: 218
Period size: 28 Copynumber: 4.5 Consensus size: 28
50314591 TAAATTGTAC
*
50314601 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50314629 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
50314657 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
50314685 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATAT
*
50314712 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
50314727 GACTTAATAT
Statistics
Matches: 96, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
27 24 0.25
28 72 0.75
ACGTcount: A:0.26, C:0.12, G:0.29, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATAT
Found at i:50319167 original size:38 final size:38
Alignment explanation
Indices: 50319115--50319191 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
50319105 AACTTTTATT
* *
50319115 ACACCGGCAATAAGCCTGCTAGGCACAAAGCTTGAATA
1 ACACCGACAATAAGCCTGCTAGGCACAAAGCCTGAATA
*
50319153 ACACCGACACTAAGCCTGCTAGGCACAAAGCCTGAATA
1 ACACCGACAATAAGCCTGCTAGGCACAAAGCCTGAATA
50319191 A
1 A
50319192 TAGTATAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.38, C:0.29, G:0.19, T:0.14
Consensus pattern (38 bp):
ACACCGACAATAAGCCTGCTAGGCACAAAGCCTGAATA
Found at i:50319495 original size:14 final size:14
Alignment explanation
Indices: 50319476--50319502 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50319466 TACATTGGAC
50319476 AGATTCATGCATGT
1 AGATTCATGCATGT
50319490 AGATTCATGCATG
1 AGATTCATGCATG
50319503 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50321361 original size:14 final size:14
Alignment explanation
Indices: 50321342--50321368 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50321332 TACATTGGAC
50321342 AGATTCATGCATGT
1 AGATTCATGCATGT
50321356 AGATTCATGCATG
1 AGATTCATGCATG
50321369 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50322294 original size:14 final size:14
Alignment explanation
Indices: 50322275--50322301 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50322265 TACATTGGAC
50322275 AGATTCATGCATGT
1 AGATTCATGCATGT
50322289 AGATTCATGCATG
1 AGATTCATGCATG
50322302 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50323226 original size:14 final size:14
Alignment explanation
Indices: 50323207--50323233 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50323197 TACATTGGAC
50323207 AGATTCATGCATGT
1 AGATTCATGCATGT
50323221 AGATTCATGCATG
1 AGATTCATGCATG
50323234 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50323519 original size:932 final size:933
Alignment explanation
Indices: 50319385--50340723 Score: 41755
Period size: 933 Copynumber: 22.9 Consensus size: 933
50319375 TCCATAATAT
*
50319385 TATGTTTTAATATAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50319450 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50319515 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
*
50319580 CAAGCCCTTCAACTCTCAAAGTAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
*
50319645 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTTCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50319710 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
*
50319775 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGTCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50319840 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAA-TCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
*
50319904 AAATCTGTCCATTTGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
* * *
50319969 TTTTTGCTAAACTTCTGAATGAACTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCT-A
50320034 AGCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTG
650 AGCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTG
* * *
50320099 GTCTGGCATTCAAAATTATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTTGATTTTATTCA
715 GTCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCA
*
50320164 TATTCATTCCTTTTTCTTTGAAACGTTTTAATCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAAT
780 TATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAAT
*
50320229 TAAAAATGATTTTATTATGTCCAGTTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTA
845 TAAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTA
50320294 CAATGTTAATTAATGTGTCCACAC
910 CAATGTTAATTAATGTGTCCACAC
50320318 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
* * *
50320383 CAGCCGAATTTGAAGATACATCGGATAGATTCATTCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
*
50320448 GAAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50320513 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
* * * *
50320578 TCACACCATGAGACTCTTCAAAACCGTCTATCCACACTTCCAAATGGTTGTCCTAATTGCCGTTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
*
50320643 AATGTTGGTAATTTTTTAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
*
50320708 GTAGCTGCTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50320773 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
* * *
50320838 AAATCTGTCCATTCGGCTACTAGTCATTAGACCATAAATTGTTGTTGTTTTTCTTGTAAAAAGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50320903 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
*
50320968 GCTCAATTGACTTATCTTCACAAGTAGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
* *
50321033 TCTGGCGTTAAAAATTATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
*
50321098 ATTCATTCCTTTTTCTTTGAAACATTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
*
50321163 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATAATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
*
50321228 AATGTTAATTAATGTGTCCACAT
911 AATGTTAATTAATGTGTCCACAC
50321251 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
*
50321316 CGGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50321381 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50321446 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50321511 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50321576 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50321641 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50321706 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
*
50321771 AAATCTGTCCATTCGGTTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
*
50321836 TTTTTGCCAAAATTCTGAATGAACTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50321901 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
* * *
50321966 TCTGGCATTCAAAATTATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTTGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50322031 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
*
50322096 AAAAATGATTTTATTATGTCCAGTTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50322161 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50322184 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50322249 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50322314 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50322379 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50322444 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50322509 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
* *
50322574 GAAGCTGCTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50322639 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50322704 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50322769 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50322834 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50322899 TCTGGCGTTCAAAAT-ATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
*
50322963 ATTCATTCCTTTTTCTTTGAAACATTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50323028 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50323093 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50323116 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50323181 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50323246 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50323311 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50323376 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50323441 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50323506 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50323571 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50323636 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50323701 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50323766 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50323831 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
*
50323896 ATTCATTCCTTTTTCTTTGAAACATTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50323961 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50324026 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50324049 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50324114 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50324179 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50324244 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50324309 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50324374 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
*
50324439 GTAGCTGCTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50324504 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50324569 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50324634 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50324699 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
* *
50324764 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCAAAATAGAGGGTCTTGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50324829 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50324894 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50324959 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50324982 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50325047 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50325112 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50325177 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50325242 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50325307 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50325372 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50325437 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50325502 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50325567 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50325632 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50325697 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50325762 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50325827 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50325892 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50325915 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50325980 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50326045 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50326110 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50326175 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50326240 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50326305 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50326370 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50326435 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50326500 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50326565 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50326630 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50326695 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50326760 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50326825 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50326848 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50326913 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50326978 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50327043 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50327108 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50327173 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50327238 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50327303 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50327368 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50327433 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50327498 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50327563 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCT-GATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50327627 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50327692 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50327757 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50327780 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50327845 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50327910 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50327975 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50328040 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50328105 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50328170 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50328235 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50328300 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50328365 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50328430 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50328495 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50328560 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50328625 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50328690 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50328713 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50328778 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50328843 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50328908 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50328973 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50329038 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50329103 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50329168 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50329233 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50329298 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50329363 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50329428 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50329493 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50329558 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50329623 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50329646 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50329711 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50329776 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50329841 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50329906 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50329971 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50330036 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50330101 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50330166 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50330231 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50330296 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50330361 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
*
50330426 ATTCATTCCTTTTTCTTTGAAACATTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50330491 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50330556 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50330579 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50330644 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50330709 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50330774 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50330839 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50330904 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50330969 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50331034 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50331099 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50331164 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50331229 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50331294 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCT-GATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50331358 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50331423 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50331488 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50331511 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50331576 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50331641 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50331706 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50331771 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50331836 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50331901 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50331966 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50332031 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50332096 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50332161 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50332226 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50332291 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50332356 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50332421 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50332444 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50332509 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50332574 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50332639 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50332704 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50332769 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50332834 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50332899 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50332964 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50333029 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50333094 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50333159 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50333224 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50333289 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50333354 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50333377 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50333442 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50333507 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50333572 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50333637 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50333702 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50333767 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50333832 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50333897 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50333962 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50334027 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50334092 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50334157 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50334222 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50334287 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50334310 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50334375 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50334440 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50334505 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50334570 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50334635 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50334700 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50334765 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50334830 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50334895 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50334960 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50335025 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50335090 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50335155 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50335220 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50335243 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50335308 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50335373 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50335438 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50335503 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50335568 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50335633 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50335698 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50335763 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50335828 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50335893 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50335958 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50336023 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50336088 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50336153 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50336176 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50336241 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50336306 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50336371 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50336436 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50336501 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50336566 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50336631 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50336696 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50336761 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50336826 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50336891 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50336956 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50337021 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50337086 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50337109 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50337174 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50337239 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50337304 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
*
50337369 TCACACCATGAGACTCTTCAAAACCGTCCATCCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50337434 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50337499 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50337564 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
* * *
50337629 AAATCTGTCCATTCGGCTACTAGTCATTAGACCATAAATTGTTGTTGTTTTTCTTGTAAAAAGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
50337694 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50337759 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
50337824 TCTGGCGTTCAAAAT-ATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
50337888 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
50337953 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50338018 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50338041 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50338106 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50338171 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50338236 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50338301 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50338366 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50338431 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50338496 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50338561 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
*
50338626 TTTTTGCCAAAATTCTGAATGAACTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
50338691 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
** *
50338756 TCTGGCAATCAAAATTATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
*
50338821 ATTCATTCCTTTTTCTTGGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
*
50338886 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTTTTAC
846 AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
50338951 AATGTTAATTAATGTGTCCACAC
911 AATGTTAATTAATGTGTCCACAC
50338974 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50339039 CAGCCGAATTTGAAGATACATT-G---G----A--C----AGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50339090 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
50339155 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
50339220 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
50339285 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
50339350 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50339415 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
50339480 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
* *
50339545 TTTTTGCCAAAATTCTGAATGAACTATAATTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
*
50339610 GCTCAATTGACTTATCTTCACAAGTGGCATTAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
** *
50339675 TCTGGCAATCAAAATTATACCGAAGGTTCCTATTTAT-CTAAATAGAGGGTCTCGATTTTATTCA
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTT-TGCTAAATAGAGGGTCTCGATTTTATTCA
* * *
50339739 TATTCATTCCTTTTTCTTGGAAACGTTTTAAGCCCAGGTTCTTATTTTCGAAGTTTGTCCTAAAT
780 TATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAAT
50339804 TAAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTA
845 TAAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTA
50339869 CAATGTTAATTAATGTGTCCACAC
910 CAATGTTAATTAATGTGTCCACAC
*
50339893 TATGTTTTAATTTAGTTCAGCTAAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
1 TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
50339958 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
66 CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
50340023 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
131 GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
*
50340088 CAAGCCCTTCAACTCCCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
196 CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
* * *
50340153 TCACACCATGAGACTCTTCAAAACCGTCTATTCACACTTCCAAATGGTTGTTCTAATTTCCATTC
261 TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
*
50340218 AATGTTGGTAATTTTTCAGCAAGAATTGCTTACTGAATTACCTCATTTAATTCCATTAGCTGAAT
326 AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
* * *
50340283 GTAGTTGCTGCTATTGTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
391 GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
50340348 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
456 GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
* * *
50340413 AAATCTGTCCATTCGGCTTCTAGTCATTAGACTATAAATTGTTGTTGTTTTTTTTGTGAGAGGAC
521 AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
*
50340478 TTTTTGCCAAAATTCTGAATGAACTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
586 TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
*
50340543 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTAATTTTGTTTCCAAACTTATCACCCTTGG
651 GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
* * * *
50340608 TCTGGCGTTCAAAATTATACCGAAGGTTCCTATGTTGCTAAATAGAAGGTCTTGATTTTATTCAT
716 TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
*
50340673 ATTCATTCCTTTTTCTTTGAAATGTTTTAAGCCCAGGTCCTTATTTTCTAA
781 ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAA
50340724 TAGTGGTTCA
Statistics
Matches: 20269, Mismatches: 116, Indels: 42
0.99 0.01 0.00
Matches are distributed among these distances:
919 907 0.04
920 2 0.00
923 2 0.00
925 1 0.00
927 1 0.00
929 2 0.00
932 3717 0.18
933 15512 0.77
934 125 0.01
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.38
Consensus pattern (933 bp):
TATGTTTTAATTTAGTTCAGCTGAATTTGTTGAATTTAATTAAGTTCATGTGTGTTGTTTAGGTG
CAGCCGAATTTGAAGATACATTGGACAGATTCATGCATGTAGATTCATGCATGGGAGATGCATTT
GCAGCTGGTACAATTCATGCAATGAAGCTGATTTAATTTGGTCACTCTACAAAGCAACTATTCAT
CAAGCCCTTCAACTCTCAAAGCAGCATAATGTTGTTCACACCATGACCATTCGGTTCAGCCAAGT
TCACACCATGAGACTCTTCAAAACCGTCCATTCACACTTCCAAATGGTTGTTCTAATTGCCATTT
AATGTTGGTAATTTTTCAGCAAGAATTGCTTAATGAATTACCTCATTTAATTCCATTAGCTGAAT
GTAGCTACTGCTATTTTCCAAAGATCATTGGAAGCTATTCCTTGGTCTATATTCAGCCGAACCTT
GAAGCAACCCATTCATGAATTCAAGCTGGAAATTAGTTCAATGTTTTACTTTGTTATTAAGTCTT
AAATCTGTCCATTCGGCTACTAGTCATTAGACTATAAATTGTTGTTGTTTTTCTTGTAAGAGGAC
TTTTTGCCAAAATTCTGAATGAATTATATTTTTGGTGAGTTAATTCACTCTCTTTATTCTCCTAA
GCTCAATTGACTTATCTTCACAAGTGGCATGAATCTGATTTTGTTTCCAAACTTATCACCCTTGG
TCTGGCGTTCAAAATCATACCGAAGGTTCCTATTTTGCTAAATAGAGGGTCTCGATTTTATTCAT
ATTCATTCCTTTTTCTTTGAAACGTTTTAAGCCCAGGTCCTTATTTTCTAAGTTTGTCCTAAATT
AAAAATGATTTTATTATGTCCAGCTGAATTATTGAGTCTTGTTTAATTATCATTTAATTTGTTAC
AATGTTAATTAATGTGTCCACAC
Found at i:50324159 original size:14 final size:14
Alignment explanation
Indices: 50324140--50324166 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50324130 TACATTGGAC
50324140 AGATTCATGCATGT
1 AGATTCATGCATGT
50324154 AGATTCATGCATG
1 AGATTCATGCATG
50324167 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50325092 original size:14 final size:14
Alignment explanation
Indices: 50325073--50325099 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50325063 TACATTGGAC
50325073 AGATTCATGCATGT
1 AGATTCATGCATGT
50325087 AGATTCATGCATG
1 AGATTCATGCATG
50325100 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50326025 original size:14 final size:14
Alignment explanation
Indices: 50326006--50326032 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50325996 TACATTGGAC
50326006 AGATTCATGCATGT
1 AGATTCATGCATGT
50326020 AGATTCATGCATG
1 AGATTCATGCATG
50326033 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50326958 original size:14 final size:14
Alignment explanation
Indices: 50326939--50326965 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50326929 TACATTGGAC
50326939 AGATTCATGCATGT
1 AGATTCATGCATGT
50326953 AGATTCATGCATG
1 AGATTCATGCATG
50326966 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50327890 original size:14 final size:14
Alignment explanation
Indices: 50327871--50327897 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50327861 TACATTGGAC
50327871 AGATTCATGCATGT
1 AGATTCATGCATGT
50327885 AGATTCATGCATG
1 AGATTCATGCATG
50327898 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50328823 original size:14 final size:14
Alignment explanation
Indices: 50328804--50328830 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50328794 TACATTGGAC
50328804 AGATTCATGCATGT
1 AGATTCATGCATGT
50328818 AGATTCATGCATG
1 AGATTCATGCATG
50328831 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50329756 original size:14 final size:14
Alignment explanation
Indices: 50329737--50329763 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50329727 TACATTGGAC
50329737 AGATTCATGCATGT
1 AGATTCATGCATGT
50329751 AGATTCATGCATG
1 AGATTCATGCATG
50329764 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50330689 original size:14 final size:14
Alignment explanation
Indices: 50330670--50330696 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50330660 TACATTGGAC
50330670 AGATTCATGCATGT
1 AGATTCATGCATGT
50330684 AGATTCATGCATG
1 AGATTCATGCATG
50330697 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50331621 original size:14 final size:14
Alignment explanation
Indices: 50331602--50331628 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50331592 TACATTGGAC
50331602 AGATTCATGCATGT
1 AGATTCATGCATGT
50331616 AGATTCATGCATG
1 AGATTCATGCATG
50331629 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50332554 original size:14 final size:14
Alignment explanation
Indices: 50332535--50332561 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50332525 TACATTGGAC
50332535 AGATTCATGCATGT
1 AGATTCATGCATGT
50332549 AGATTCATGCATG
1 AGATTCATGCATG
50332562 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50333487 original size:14 final size:14
Alignment explanation
Indices: 50333468--50333494 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50333458 TACATTGGAC
50333468 AGATTCATGCATGT
1 AGATTCATGCATGT
50333482 AGATTCATGCATG
1 AGATTCATGCATG
50333495 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50334420 original size:14 final size:14
Alignment explanation
Indices: 50334401--50334427 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50334391 TACATTGGAC
50334401 AGATTCATGCATGT
1 AGATTCATGCATGT
50334415 AGATTCATGCATG
1 AGATTCATGCATG
50334428 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50335353 original size:14 final size:14
Alignment explanation
Indices: 50335334--50335360 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50335324 TACATTGGAC
50335334 AGATTCATGCATGT
1 AGATTCATGCATGT
50335348 AGATTCATGCATG
1 AGATTCATGCATG
50335361 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50336286 original size:14 final size:14
Alignment explanation
Indices: 50336267--50336293 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50336257 TACATTGGAC
50336267 AGATTCATGCATGT
1 AGATTCATGCATGT
50336281 AGATTCATGCATG
1 AGATTCATGCATG
50336294 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50337219 original size:14 final size:14
Alignment explanation
Indices: 50337200--50337226 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50337190 TACATTGGAC
50337200 AGATTCATGCATGT
1 AGATTCATGCATGT
50337214 AGATTCATGCATG
1 AGATTCATGCATG
50337227 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50338151 original size:14 final size:14
Alignment explanation
Indices: 50338132--50338158 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50338122 TACATTGGAC
50338132 AGATTCATGCATGT
1 AGATTCATGCATGT
50338146 AGATTCATGCATG
1 AGATTCATGCATG
50338159 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50340003 original size:14 final size:14
Alignment explanation
Indices: 50339984--50340010 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
50339974 TACATTGGAC
50339984 AGATTCATGCATGT
1 AGATTCATGCATGT
50339998 AGATTCATGCATG
1 AGATTCATGCATG
50340011 GGAGATGCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:50361053 original size:23 final size:22
Alignment explanation
Indices: 50361001--50361053 Score: 54
Period size: 23 Copynumber: 2.4 Consensus size: 22
50360991 TCCTTGTCTT
*
50361001 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
* *
50361023 CTTATTTTCTCTTCTTTCTTC-AA
1 TTTCTTTTCT-TTCTTT-TTCTAA
50361046 TTTCTTTT
1 TTTCTTTT
50361054 TCACTTTTCT
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
22 7 0.29
23 14 0.58
24 3 0.12
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Done.