Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 155 of 199
Found at i:51248054 original size:19 final size:19
Alignment explanation
Indices: 51248032--51248251 Score: 124
Period size: 19 Copynumber: 11.5 Consensus size: 19
51248022 CCTACAAAAT
51248032 TACAAAATTACAATATTCA
1 TACAAAATTACAATATTCA
*
51248051 TACAAAAAAATTGCAATATTCA
1 TAC---AAAATTACAATATTCA
* *
51248073 TATAAAATTATAATA-T--
1 TACAAAATTACAATATTCA
*
51248089 TACAATATT-C-ATA--CA
1 TACAAAATTACAATATTCA
*
51248104 -AAAAAATTACAATATTCA
1 TACAAAATTACAATATTCA
51248122 TACAAAAAATTACAATATTCA
1 TAC--AAAATTACAATATTCA
*
51248143 TACAAAA-TAC--TAGTCCAA
1 TACAAAATTACAATA-TTC-A
*
51248161 AACTATAAA-TACAAATTTAATT-A
1 TAC-A-AAATTAC-AA--T-ATTCA
*
51248184 TAAAATAATTACAATATTCA
1 TACAA-AATTACAATATTCA
*
51248204 TAAAAAATTACAATATTCA
1 TACAAAATTACAATATTCA
*
51248223 TACAAAAATTAGAATATTCA
1 TAC-AAAATTACAATATTCA
51248243 TACAAAATT
1 TACAAAATT
51248252 CTAATCCAAA
Statistics
Matches: 158, Mismatches: 17, Indels: 52
0.70 0.07 0.23
Matches are distributed among these distances:
14 9 0.06
15 1 0.01
16 12 0.08
17 2 0.01
18 9 0.06
19 44 0.28
20 31 0.20
21 20 0.13
22 22 0.14
23 5 0.03
25 2 0.01
26 1 0.01
ACGTcount: A:0.55, C:0.12, G:0.01, T:0.31
Consensus pattern (19 bp):
TACAAAATTACAATATTCA
Found at i:51248067 original size:22 final size:22
Alignment explanation
Indices: 51248035--51248149 Score: 160
Period size: 22 Copynumber: 5.0 Consensus size: 22
51248025 ACAAAATTAC
51248035 AAAATTACAATATTCATACAAA
1 AAAATTACAATATTCATACAAA
* *
51248057 AAAATTGCAATATTCATATAAAA
1 AAAATTACAATATTCATA-CAAA
51248080 TTATAATATTACAATATTCATACAAA
1 --A-AA-ATTACAATATTCATACAAA
51248106 AAAATTACAATATTCATAC-AA
1 AAAATTACAATATTCATACAAA
51248127 AAAATTACAATATTCATACAAA
1 AAAATTACAATATTCATACAAA
51248149 A
1 A
51248150 TACTAGTCCA
Statistics
Matches: 83, Mismatches: 4, Indels: 12
0.84 0.04 0.12
Matches are distributed among these distances:
21 21 0.25
22 36 0.43
23 5 0.06
24 1 0.01
25 1 0.01
26 5 0.06
27 14 0.17
ACGTcount: A:0.57, C:0.12, G:0.01, T:0.30
Consensus pattern (22 bp):
AAAATTACAATATTCATACAAA
Found at i:51248081 original size:49 final size:47
Alignment explanation
Indices: 51248011--51248149 Score: 178
Period size: 49 Copynumber: 3.0 Consensus size: 47
51248001 ATATTCCGAC
*
51248011 ATTACAATATTCCTACAAAATTACAAAATTACAATATTCATACAAAAAA
1 ATTACAATATT-CTATAAAATTA-AAAATTACAATATTCATACAAAAAA
* *
51248060 ATTGCAATATTCATATAAAATTATAATATTACAATATTCATACAAAAAA
1 ATTACAATATTC-TATAAAATTA-AAAATTACAATATTCATACAAAAAA
*
51248109 ATTACAATATTC-AT-ACA--AAAAATTACAATATTCATACAAAA
1 ATTACAATATTCTATAAAATTAAAAATTACAATATTCATACAAAA
51248150 TACTAGTCCA
Statistics
Matches: 82, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
43 22 0.27
44 1 0.01
46 2 0.02
47 2 0.02
48 1 0.01
49 54 0.66
ACGTcount: A:0.55, C:0.14, G:0.01, T:0.31
Consensus pattern (47 bp):
ATTACAATATTCTATAAAATTAAAAATTACAATATTCATACAAAAAA
Found at i:51248173 original size:70 final size:71
Alignment explanation
Indices: 51248035--51248175 Score: 171
Period size: 70 Copynumber: 2.0 Consensus size: 71
51248025 ACAAAATTAC
* * ** * **
51248035 AAAATTACAATATTCATACAAAAAAATTGCAATATTCATATAAAATTATAATATTACAATATTCA
1 AAAATTACAATATTCATACAAAAAAATTACAATATTCATACAAAATTATAATACCAAAATATAAA
51248100 TACAAA
66 TACAAA
*
51248106 AAAATTACAATATTCATAC-AAAAAATTACAATATTCATACAAAA-TACTAGT-CCAAAACTATA
1 AAAATTACAATATTCATACAAAAAAATTACAATATTCATACAAAATTA-TAATACCAAAA-TATA
51248168 AATACAAA
64 AATACAAA
51248176 TTTAATTATA
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
69 5 0.08
70 36 0.60
71 19 0.32
ACGTcount: A:0.56, C:0.13, G:0.01, T:0.29
Consensus pattern (71 bp):
AAAATTACAATATTCATACAAAAAAATTACAATATTCATACAAAATTATAATACCAAAATATAAA
TACAAA
Found at i:51248208 original size:20 final size:19
Alignment explanation
Indices: 51248183--51248251 Score: 102
Period size: 20 Copynumber: 3.5 Consensus size: 19
51248173 AAATTTAATT
51248183 ATAAAATAATTACAATATTC
1 ATAAAA-AATTACAATATTC
51248203 ATAAAAAATTACAATATTC
1 ATAAAAAATTACAATATTC
*
51248222 ATACAAAAATTAGAATATTC
1 ATA-AAAAATTACAATATTC
*
51248242 ATACAAAATT
1 ATAAAAAATT
51248252 CTAATCCAAA
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
19 22 0.48
20 24 0.52
ACGTcount: A:0.57, C:0.10, G:0.01, T:0.32
Consensus pattern (19 bp):
ATAAAAAATTACAATATTC
Found at i:51248229 original size:21 final size:21
Alignment explanation
Indices: 51248035--51248149 Score: 99
Period size: 21 Copynumber: 5.1 Consensus size: 21
51248025 ACAAAATTAC
51248035 AAAATTACAATATTCATACAAA
1 AAAATTACAATATTCATAC-AA
* *
51248057 AAAATTGCAATATTCAT--AT
1 AAAATTACAATATTCATACAA
*
51248076 AAAATTATAATATTACAATATTCATACA
1 AAAATTACAATATT-C-ATA--C--A-A
51248104 AAAAAATTACAATATTCATACAA
1 AAA--ATTACAATATTCATACAA
51248127 AAAATTACAATATTCATACAA
1 AAAATTACAATATTCATACAA
51248148 AA
1 AA
51248150 TACTAGTCCA
Statistics
Matches: 76, Mismatches: 6, Indels: 23
0.72 0.06 0.22
Matches are distributed among these distances:
19 13 0.17
20 1 0.01
21 22 0.29
22 16 0.21
23 4 0.05
24 1 0.01
26 1 0.01
27 1 0.01
28 6 0.08
29 1 0.01
30 10 0.13
ACGTcount: A:0.57, C:0.12, G:0.01, T:0.30
Consensus pattern (21 bp):
AAAATTACAATATTCATACAA
Found at i:51248239 original size:39 final size:40
Alignment explanation
Indices: 51248087--51248249 Score: 133
Period size: 43 Copynumber: 4.0 Consensus size: 40
51248077 AAATTATAAT
51248087 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAAAATTACAATATTCATA-AAAAA
* * *
51248130 ATTACAATATTCATACAAAATACTAGTCCAAAACT-ATAAATACAA
1 ATTACAATATTCATACAAAA-A-T--TACAATATTCATAAA-A-AA
*
51248175 ATT--TA-ATT-ATA-AAATAATTACAATATTCAT-AAAAA
1 ATTACAATATTCATACAAA-AATTACAATATTCATAAAAAA
* *
51248210 ATTACAATATTCATACAAAAATTAGAATATTCATACAAAA
1 ATTACAATATTCATACAAAAATTACAATATTCATAAAAAA
51248250 TTCTAATCCA
Statistics
Matches: 96, Mismatches: 10, Indels: 31
0.70 0.07 0.23
Matches are distributed among these distances:
35 5 0.05
36 1 0.01
37 9 0.09
38 5 0.05
39 18 0.19
40 11 0.11
41 8 0.08
42 4 0.04
43 20 0.21
44 4 0.04
45 11 0.11
ACGTcount: A:0.56, C:0.13, G:0.01, T:0.30
Consensus pattern (40 bp):
ATTACAATATTCATACAAAAATTACAATATTCATAAAAAA
Found at i:51248250 original size:39 final size:39
Alignment explanation
Indices: 51248087--51248251 Score: 128
Period size: 39 Copynumber: 4.1 Consensus size: 39
51248077 AAATTATAAT
51248087 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAAA
1 ATTACAATATTCATAC--AAAAATTACAATATTCATAC--AAA
* *
51248130 ATTACAATATTCATAC-AAAA-TAC--TAGTCCAAAACTATAA
1 ATTACAATATTCATACAAAAATTACAATA-TTC-ATAC-A-AA
*
51248169 A-TACAAATTTAATT-ATA-AAATAATTACAATATTCATAAAAA
1 ATTAC-AA--T-ATTCATACAAA-AATTACAATATTCATACAAA
*
51248210 ATTACAATATTCATACAAAAATTAGAATATTCATACAAA
1 ATTACAATATTCATACAAAAATTACAATATTCATACAAA
51248249 ATT
1 ATT
51248252 CTAATCCAAA
Statistics
Matches: 99, Mismatches: 8, Indels: 34
0.70 0.06 0.24
Matches are distributed among these distances:
37 2 0.02
38 9 0.09
39 36 0.36
40 7 0.07
41 11 0.11
42 9 0.09
43 21 0.21
44 2 0.02
45 2 0.02
ACGTcount: A:0.55, C:0.13, G:0.01, T:0.31
Consensus pattern (39 bp):
ATTACAATATTCATACAAAAATTACAATATTCATACAAA
Found at i:51248250 original size:61 final size:62
Alignment explanation
Indices: 51248087--51248250 Score: 162
Period size: 61 Copynumber: 2.7 Consensus size: 62
51248077 AAATTATAAT
*
51248087 ATTACAATATTCATACAAAAAAATTACAATATTCATACAAAA-AATTACAATATTCATACAAA
1 ATTACAATATTCATAC-AAAAAATTACAATATTCATACAAAATAATTACAATATTCATAAAAA
* * * * * *
51248149 A-TAC--TAGTCCAAAACTATAAA-TACAA-ATTTAATTATAAAATAATTACAATATTCATAAAA
1 ATTACAATA-TTC-ATACAAAAAATTACAATA-TTCA-TACAAAATAATTACAATATTCATAAAA
51248209 A
62 A
*
51248210 ATTACAATATTCATAC-AAAAATTAGAATATTCATACAAAAT
1 ATTACAATATTCATACAAAAAATTACAATATTCATACAAAAT
51248251 TCTAATCCAA
Statistics
Matches: 79, Mismatches: 13, Indels: 21
0.70 0.12 0.19
Matches are distributed among these distances:
58 1 0.01
59 10 0.13
60 12 0.15
61 37 0.47
62 14 0.18
63 3 0.04
64 2 0.03
ACGTcount: A:0.55, C:0.13, G:0.01, T:0.30
Consensus pattern (62 bp):
ATTACAATATTCATACAAAAAATTACAATATTCATACAAAATAATTACAATATTCATAAAAA
Found at i:51248416 original size:3 final size:3
Alignment explanation
Indices: 51248410--51248469 Score: 74
Period size: 3 Copynumber: 21.3 Consensus size: 3
51248400 TTTTCTTTCT
*
51248410 TTC TTC TTC TTC -TC TTC TTC TCC TTC -TC TTC TTC TTC -TC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
*
51248455 TCC TTC -TC TTC TTC T
1 TTC TTC TTC TTC TTC T
51248470 CTTTTCTCTC
Statistics
Matches: 49, Mismatches: 4, Indels: 8
0.80 0.07 0.13
Matches are distributed among these distances:
2 8 0.16
3 41 0.84
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (3 bp):
TTC
Found at i:51248427 original size:14 final size:14
Alignment explanation
Indices: 51248406--51248483 Score: 83
Period size: 14 Copynumber: 5.7 Consensus size: 14
51248396 TTTTTTTTCT
51248406 TTCT-TTCTTCTTC
1 TTCTCTTCTTCTTC
51248419 TTCTCTTCTTC-TC
1 TTCTCTTCTTCTTC
*
51248432 CT-TC-TCTTCTTC
1 TTCTCTTCTTCTTC
*
51248444 TTCTCTTCTTCTCC
1 TTCTCTTCTTCTTC
*
51248458 TTCTCTTCTTCTCTT
1 TTCTCTTCTTCT-TC
51248473 TTCTCTCTCTT
1 TTCTCT-TCTT
51248484 TTTTTTTTCT
Statistics
Matches: 54, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
11 5 0.09
12 5 0.09
13 9 0.17
14 25 0.46
15 6 0.11
16 4 0.07
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (14 bp):
TTCTCTTCTTCTTC
Found at i:51248481 original size:25 final size:25
Alignment explanation
Indices: 51248411--51248469 Score: 118
Period size: 25 Copynumber: 2.4 Consensus size: 25
51248401 TTTCTTTCTT
51248411 TCTTCTTCTTCTCTTCTTCTCCTTC
1 TCTTCTTCTTCTCTTCTTCTCCTTC
51248436 TCTTCTTCTTCTCTTCTTCTCCTTC
1 TCTTCTTCTTCTCTTCTTCTCCTTC
51248461 TCTTCTTCT
1 TCTTCTTCT
51248470 CTTTTCTCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 34 1.00
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (25 bp):
TCTTCTTCTTCTCTTCTTCTCCTTC
Found at i:51248485 original size:11 final size:11
Alignment explanation
Indices: 51248406--51248483 Score: 81
Period size: 11 Copynumber: 6.9 Consensus size: 11
51248396 TTTTTTTTCT
51248406 TTCTT-TCTTC
1 TTCTTCTCTTC
51248416 TTCTTCTCTTC
1 TTCTTCTCTTC
51248427 TTCTCCTTCTCTTC
1 -T-T-CTTCTCTTC
51248441 TTCTTCTCTTC
1 TTCTTCTCTTC
*
51248452 TTCTCCT-TCTC
1 TTCTTCTCT-TC
51248463 TTCTTCTCTT-
1 TTCTTCTCTTC
51248473 TTCTCTCTCTT
1 TTCT-TCTCTT
51248484 TTTTTTTTCT
Statistics
Matches: 59, Mismatches: 2, Indels: 13
0.80 0.03 0.18
Matches are distributed among these distances:
10 10 0.17
11 35 0.59
12 3 0.05
13 2 0.03
14 9 0.15
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (11 bp):
TTCTTCTCTTC
Found at i:51250291 original size:18 final size:18
Alignment explanation
Indices: 51250233--51250307 Score: 55
Period size: 18 Copynumber: 4.1 Consensus size: 18
51250223 GAAATTTTTT
*
51250233 TATAAAAATCGTAAAAAA
1 TATAAAAATCATAAAAAA
** **
51250251 -ATTAAAAATGGTAAAATTT
1 TA-TAAAAATCATAAAA-AA
51250270 TATAAAAATCATAAAAAA
1 TATAAAAATCATAAAAAA
51250288 TAT-AAAATGCATCAAAAAA
1 TATAAAAAT-CAT-AAAAAA
51250307 T
1 T
51250308 CCCTTTAACA
Statistics
Matches: 45, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
17 6 0.13
18 19 0.42
19 19 0.42
20 1 0.02
ACGTcount: A:0.63, C:0.05, G:0.05, T:0.27
Consensus pattern (18 bp):
TATAAAAATCATAAAAAA
Found at i:51250541 original size:9 final size:9
Alignment explanation
Indices: 51250524--51250657 Score: 56
Period size: 9 Copynumber: 14.3 Consensus size: 9
51250514 TGTATTTCTA
*
51250524 TATATTTTT
1 TATAATTTT
51250533 TATAATTTT
1 TATAATTTT
* *
51250542 TATGATATT
1 TATAATTTT
*
51250551 TATAAAATTT
1 TAT-AATTTT
*
51250561 TACAATTTTTT
1 TATAA--TTTT
*
51250572 TTTATATTTT
1 TATA-ATTTT
*
51250582 TACAATTTT
1 TATAATTTT
*
51250591 TATATTTTTT
1 TATA-ATTTT
*
51250601 TCTAA-TTT
1 TATAATTTT
*
51250609 T-TAATATT
1 TATAATTTT
*
51250617 TAAAATTTT
1 TATAATTTT
*
51250626 TATTAAAATTT
1 TA-T-AATTTT
* *
51250637 AATAATATT
1 TATAATTTT
*
51250646 TATAGTTTT
1 TATAATTTT
51250655 TAT
1 TAT
51250658 TGATATTAAT
Statistics
Matches: 89, Mismatches: 27, Indels: 18
0.66 0.20 0.13
Matches are distributed among these distances:
7 3 0.03
8 7 0.08
9 48 0.54
10 19 0.21
11 11 0.12
12 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.63
Consensus pattern (9 bp):
TATAATTTT
Found at i:51250551 original size:11 final size:10
Alignment explanation
Indices: 51250516--51250617 Score: 54
Period size: 10 Copynumber: 10.5 Consensus size: 10
51250506 TAAAATTTTG
*
51250516 TATTTCTATA
1 TATTTTTATA
51250526 TATTTTT-TA
1 TATTTTTATA
51250535 TAATTTTTATGA
1 T-ATTTTTAT-A
51250547 TA--TTTATA
1 TATTTTTATA
* * *
51250555 AAATTTTACAA
1 TATTTTTA-TA
* *
51250566 TTTTTTTTTA
1 TATTTTTATA
*
51250576 TATTTTTACA
1 TATTTTTATA
51250586 -ATTTTTATA
1 TATTTTTATA
* *
51250595 TTTTTTTCTA
1 TATTTTTATA
51250605 -ATTTTTA-A
1 TATTTTTATA
51250613 TATTT
1 TATTT
51250618 AAAATTTTTA
Statistics
Matches: 68, Mismatches: 16, Indels: 17
0.67 0.16 0.17
Matches are distributed among these distances:
8 3 0.04
9 25 0.37
10 31 0.46
11 7 0.10
12 2 0.03
ACGTcount: A:0.29, C:0.04, G:0.01, T:0.66
Consensus pattern (10 bp):
TATTTTTATA
Found at i:51250592 original size:17 final size:17
Alignment explanation
Indices: 51250570--51250628 Score: 66
Period size: 17 Copynumber: 3.4 Consensus size: 17
51250560 TTACAATTTT
51250570 TTTTTATATTTTTACAA
1 TTTTTATATTTTTACAA
*
51250587 TTTTTATATTTTTTTCTAA
1 TTTTTATA-TTTTTAC-AA
* *
51250606 TTTTTA-ATATTTAAAA
1 TTTTTATATTTTTACAA
51250622 TTTTTAT
1 TTTTTAT
51250629 TAAAATTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
16 8 0.23
17 12 0.34
18 7 0.20
19 8 0.23
ACGTcount: A:0.29, C:0.03, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTTATATTTTTACAA
Found at i:51250600 original size:19 final size:19
Alignment explanation
Indices: 51250558--51250617 Score: 59
Period size: 19 Copynumber: 3.0 Consensus size: 19
51250548 ATTTATAAAA
* *
51250558 TTTTACAATTTTTTTTTATAT
1 TTTTACAA--TTTTTATATTT
51250579 TTTTACAATTTTTATATTT
1 TTTTACAATTTTTATATTT
51250598 TTTT-CTAATTTTTAATATTT
1 TTTTAC-AATTTTT-ATATTT
51250618 AAAATTTTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
18 1 0.03
19 20 0.57
20 6 0.17
21 8 0.23
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTACAATTTTTATATTT
Found at i:51250636 original size:19 final size:20
Alignment explanation
Indices: 51250605--51250648 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
51250595 TTTTTTTCTA
*
51250605 ATTT-TTAATATTTAA-AAT
1 ATTTATTAAAATTTAATAAT
*
51250623 TTTTATTAAAATTTAATAAT
1 ATTTATTAAAATTTAATAAT
51250643 ATTTAT
1 ATTTAT
51250649 AGTTTTTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
18 3 0.14
19 10 0.48
20 8 0.38
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTATTAAAATTTAATAAT
Found at i:51250695 original size:29 final size:28
Alignment explanation
Indices: 51250527--51250696 Score: 82
Period size: 29 Copynumber: 6.1 Consensus size: 28
51250517 ATTTCTATAT
* * *
51250527 ATTTTTTATAA-TTTTTATGATATTTATA
1 ATTTTTTATAATTTTTTTTTA-ATTTTTA
** *
51250555 AAATTTTACAATTTTTTTTTATATTTTTA
1 ATTTTTTATAATTTTTTTTTA-ATTTTTA
* *
51250584 CAATTTTTAT-ATTTTTTTCTAATTTTTA
1 -ATTTTTTATAATTTTTTTTTAATTTTTA
* * * **
51250612 A-TATTTA-AAATTTTTATTAAAATTTA
1 ATTTTTTATAATTTTTTTTTAATTTTTA
* * * * *
51250638 ATAATATTTAT-AGTTTTTATTGA-TATTA
1 AT--TTTTTATAATTTTTTTTTAATTTTTA
51250666 ATTTTTTATAATTTTTTTTCTAATTTTTA
1 ATTTTTTATAATTTTTTTT-TAATTTTTA
51250695 AT
1 AT
51250697 AAAAGCAGGG
Statistics
Matches: 108, Mismatches: 24, Indels: 19
0.72 0.16 0.13
Matches are distributed among these distances:
26 25 0.23
27 8 0.07
28 22 0.20
29 46 0.43
30 7 0.06
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (28 bp):
ATTTTTTATAATTTTTTTTTAATTTTTA
Found at i:51258425 original size:12 final size:12
Alignment explanation
Indices: 51258410--51258446 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
51258400 ATCTGAGGTA
51258410 CGTTCTGAACTT
1 CGTTCTGAACTT
*
51258422 CGTTCTAAACTT
1 CGTTCTGAACTT
51258434 CGTTCTGAACTT
1 CGTTCTGAACTT
51258446 C
1 C
51258447 ATTCCCTGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.19, C:0.27, G:0.14, T:0.41
Consensus pattern (12 bp):
CGTTCTGAACTT
Found at i:51274066 original size:13 final size:14
Alignment explanation
Indices: 51274048--51274085 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
51274038 CTTTTATAAT
51274048 TCTTCATAATA-TA
1 TCTTCATAATATTA
*
51274061 TCTTCAAAATATTA
1 TCTTCATAATATTA
*
51274075 TATTCATAATA
1 TCTTCATAATA
51274086 AATAGGACCT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.42, C:0.13, G:0.00, T:0.45
Consensus pattern (14 bp):
TCTTCATAATATTA
Found at i:51277635 original size:22 final size:21
Alignment explanation
Indices: 51277589--51277642 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
51277579 ATTATTAATT
* *
51277589 TTTTAAAATTAAAATTAAGAT
1 TTTTAAAATTAAAAATAAGAG
51277610 TTTTAAAATATAAAAATATAG-G
1 TTTTAAAAT-TAAAAATA-AGAG
51277632 TTTTAGAAATT
1 TTTTA-AAATT
51277643 GTTTGTTTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
21 9 0.32
22 13 0.46
23 6 0.21
ACGTcount: A:0.50, C:0.00, G:0.07, T:0.43
Consensus pattern (21 bp):
TTTTAAAATTAAAAATAAGAG
Found at i:51278325 original size:9 final size:9
Alignment explanation
Indices: 51278303--51278345 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
51278293 TACTTTTATT
51278303 AATTT-AAA
1 AATTTAAAA
*
51278311 ATTTTAAAA
1 AATTTAAAA
51278320 AATTTAAAA
1 AATTTAAAA
*
51278329 GATTTAAAA
1 AATTTAAAA
*
51278338 GATTTAAA
1 AATTTAAA
51278346 CAAAAAATCT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
8 4 0.13
9 27 0.87
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (9 bp):
AATTTAAAA
Found at i:51278325 original size:17 final size:18
Alignment explanation
Indices: 51278303--51278345 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
51278293 TACTTTTATT
*
51278303 AATTTAAAA-TTTTAAAA
1 AATTTAAAAGATTTAAAA
51278320 AATTTAAAAGATTTAAAA
1 AATTTAAAAGATTTAAAA
*
51278338 GATTTAAA
1 AATTTAAA
51278346 CAAAAAATCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.39
18 14 0.61
ACGTcount: A:0.58, C:0.00, G:0.05, T:0.37
Consensus pattern (18 bp):
AATTTAAAAGATTTAAAA
Found at i:51282034 original size:19 final size:19
Alignment explanation
Indices: 51282002--51282040 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
51281992 TGAATGAAAA
*
51282002 TGAGTATGATAATTCAATT
1 TGAGTATGATAATTAAATT
51282021 TGAGT-TGATAAATTAAATT
1 TGAGTATGAT-AATTAAATT
51282040 T
1 T
51282041 AACTATTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.38, C:0.03, G:0.15, T:0.44
Consensus pattern (19 bp):
TGAGTATGATAATTAAATT
Found at i:51284301 original size:42 final size:42
Alignment explanation
Indices: 51284217--51284301 Score: 127
Period size: 42 Copynumber: 2.0 Consensus size: 42
51284207 CACACTACAT
51284217 TGTGGACAAGCCACCAGTAATTGCAGATAAACTGCCAAAAATA
1 TGTGGACAAGCCACCAG-AATTGCAGATAAACTGCCAAAAATA
* *
51284260 TGTGGACAAGCCACCA-AATCTGTAGATAAACTGCCAGAAATA
1 TGTGGACAAGCCACCAGAAT-TGCAGATAAACTGCCAAAAATA
51284302 CATGGTTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
41 3 0.08
42 20 0.51
43 16 0.41
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (42 bp):
TGTGGACAAGCCACCAGAATTGCAGATAAACTGCCAAAAATA
Found at i:51285677 original size:22 final size:22
Alignment explanation
Indices: 51285635--51285677 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
51285625 GGTAAGAAAC
* *
51285635 AAAAGTGAAGGAAAGAGAGAAG
1 AAAAGGGAAGGAAAGAAAGAAG
51285657 AAAAGGGAGAGGAAA-AAAGAA
1 AAAAGGGA-AGGAAAGAAAGAA
51285678 AAGAGTGGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.63, C:0.00, G:0.35, T:0.02
Consensus pattern (22 bp):
AAAAGGGAAGGAAAGAAAGAAG
Found at i:51286409 original size:18 final size:17
Alignment explanation
Indices: 51286386--51286438 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
51286376 AAAACCCGGG
51286386 CCCAATTACAATACAAAA
1 CCCAA-TACAATACAAAA
**
51286404 CCCAATACAACCCAAGAA
1 CCCAATACAATACAA-AA
*
51286422 CCCAAAAACAATACAAA
1 CCC-AATACAATACAAA
51286439 CCTAGCAGAC
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
17 8 0.29
18 11 0.39
19 9 0.32
ACGTcount: A:0.57, C:0.32, G:0.02, T:0.09
Consensus pattern (17 bp):
CCCAATACAATACAAAA
Found at i:51287742 original size:20 final size:19
Alignment explanation
Indices: 51287719--51287768 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
51287709 TATATATTTT
51287719 TACATATTTTACAACTTATA
1 TACATATTTTACAAC-TATA
* * *
51287739 TACATATCTATATATCTATA
1 TACATAT-TTTACAACTATA
51287759 TACATATTTT
1 TACATATTTT
51287769 TATTTTTCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
19 2 0.08
20 18 0.72
21 5 0.20
ACGTcount: A:0.38, C:0.14, G:0.00, T:0.48
Consensus pattern (19 bp):
TACATATTTTACAACTATA
Found at i:51288425 original size:109 final size:109
Alignment explanation
Indices: 51288107--51288719 Score: 1021
Period size: 109 Copynumber: 5.6 Consensus size: 109
51288097 AAAAAAATTC
* *
51288107 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTACGGTGCTAGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
51288172 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
*
51288216 AAATAAGGCAATGTTTTGCGATTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
1 AAATAAGGCAATGTTTTGCG-TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
51288281 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
65 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
* * *
51288326 AAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
* * *
51288391 TTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
*
51288435 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGATGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
51288500 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAAATTTTA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTT-AAAAATTTTA
51288545 AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
1 AAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
* * *
51288610 TTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCA
65 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
* * *** *
51288655 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATACGCTGGGTTTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
51288719 T
66 T
51288720 CTCGATTGAC
Statistics
Matches: 474, Mismatches: 27, Indels: 7
0.93 0.05 0.01
Matches are distributed among these distances:
108 25 0.05
109 207 0.44
110 169 0.36
111 73 0.15
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (109 bp):
AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
Found at i:51288541 original size:219 final size:218
Alignment explanation
Indices: 51288107--51288719 Score: 1057
Period size: 219 Copynumber: 2.8 Consensus size: 218
51288097 AAAAAAATTC
* *
51288107 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTACGGTGCTAGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
* * *
51288172 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGA
66 TTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCG-
* *
51288237 TTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGG
130 TTTGGAAATTCGAGAAAACATGCCCTAAGATGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGG
51288302 CTTAATATCCTTTTAAAAATTTTA
195 CTTAATATCCTTTTAAAAATTTTA
* * *
51288326 AAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
51288391 TTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGT
66 TTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGT
51288456 TTGGAAATTCGAGAAAACATGCCCTAAGATGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGC
131 TTGGAAATTCGAGAAAACATGCCCTAAGATGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGC
51288521 TTAATATCCTTTTAAAAAATTTTA
196 TTAATATCCTTTT-AAAAATTTTA
51288545 AAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
1 AAATAAGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGAT
51288610 TTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCG
65 TTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCG
* * * * *
51288675 TTTGGAAATTCGAG-GAACGTGCCCTAATACGCTGGGTTTCGATTT
130 TTTGGAAATTCGAGAAAACATGCCCTAAGATGCTGGGTGTCGATTT
51288720 CTCGATTGAC
Statistics
Matches: 374, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
218 77 0.21
219 179 0.48
220 118 0.32
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (218 bp):
AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
TTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGT
TTGGAAATTCGAGAAAACATGCCCTAAGATGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGGC
TTAATATCCTTTTAAAAATTTTA
Found at i:51294415 original size:88 final size:88
Alignment explanation
Indices: 51294266--51295095 Score: 1203
Period size: 88 Copynumber: 9.4 Consensus size: 88
51294256 AACAGATCAG
*
51294266 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
51294331 CCTACATTGGCAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
*
51294354 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTAAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
51294419 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
*
51294442 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTAAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
51294507 CCTGCATTGACAGTGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * *
51294530 TGAAGACACAAACCTTGCCTCTTTCAGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
51294595 CCTACATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
*
51294618 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAATAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
*
51294683 CCTGCATTGACAGCG-TGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* *
51294705 TGAAGACACAAACCTTGCCTCTCTCTGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
51294770 CCTGCATTGACAGCGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * *
51294793 TGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAGCTAGTTGAAGACAACAGATCTTGCCTA
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* ** *
51294858 CCTGAATCAACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * **
51294881 CGAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGACAGTAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* *
51294946 CCTGCATCGACAGCGAAGCGGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * * * * ** *
51294969 CGAAGACACAAGCCTTGCCTCCCTCCGTTGTAGTGGATCTAGTTGAAGATAGTAGATTTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
* * *
51295034 CCTGCATCGATAGGGAAGCAGAT
66 CCTGCATTGACAGCGAAGCAGAT
* * * * * **
51295057 CAAAGACACAAGCCTTACCTCCCTCAGCAGTAGCGGAGC
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGC
51295096 AGATCGAAGA
Statistics
Matches: 685, Mismatches: 56, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
87 83 0.12
88 602 0.88
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (88 bp):
CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTT
CCTGCATTGACAGCGAAGCAGAT
Found at i:51294898 original size:44 final size:43
Alignment explanation
Indices: 51294850--51294988 Score: 102
Period size: 44 Copynumber: 3.2 Consensus size: 43
51294840 GACAACAGAT
51294850 CTTGCCTACCTGAATCAACAGCGAAGCGGATCGAAGACACAAGC
1 CTTGCCTACCTG-ATCAACAGCGAAGCGGATCGAAGACACAAGC
* * *** * * * ** *
51294894 CTTGCCTCCCTCGGT-TGTAGTGGAGCTGG-TTGAAGACAGTAGAT
1 CTTGCCTACCT-GATCAACAGCGAAGC-GGATCGAAGACACAAG-C
* *
51294938 CTTGCCTTCCTGCATCGACAGCGAAGCGGATCGAAGACACAAGC
1 CTTGCCTACCTG-ATCAACAGCGAAGCGGATCGAAGACACAAGC
51294982 CTTGCCT
1 CTTGCCT
51294989 CCCTCCGTTG
Statistics
Matches: 67, Mismatches: 22, Indels: 12
0.66 0.22 0.12
Matches are distributed among these distances:
43 17 0.25
44 33 0.49
45 17 0.25
ACGTcount: A:0.25, C:0.28, G:0.26, T:0.21
Consensus pattern (43 bp):
CTTGCCTACCTGATCAACAGCGAAGCGGATCGAAGACACAAGC
Found at i:51294913 original size:351 final size:352
Alignment explanation
Indices: 51294266--51295095 Score: 1230
Period size: 351 Copynumber: 2.4 Consensus size: 352
51294256 AACAGATCAG
* *
51294266 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAATAGATCTTGCCTT
* *
51294331 CCTACATTGGCAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGG
66 CCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGG
51294396 TTAAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCC
131 TTAAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCC
* * * * ** *
51294461 TCTCTCGGTTGTAGCGGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGC
196 TCTCTCAGTTGTAGCGGAGCTAGTTAAAGACAACAGATCTTGCCTACCTGAATCAACAGCGAAGC
* **
51294526 AGATTGAAGACACAAACCTTGCCTCTTTCAGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTG
261 AGATCGAAGACACAAACCTTGCCTCCCTCAGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTG
*
51294591 CCTTCCTACATTGACAGCGAAGCAGAT
326 CCTTCCTACATCGACAGCGAAGCAGAT
51294618 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAATAGATCTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAATAGATCTTGCCTT
* * *
51294683 CCTGCATTGACAGCG-TGCAGATTGAAGACACAAACCTTGCCTCTCTCTGTTGTAGCGGAGCTGG
66 CCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGG
* *
51294747 TTGAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATTGAAGACACAAACCTTGCC
131 TTAAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCC
*
51294812 TCTCTCAGTTGTAGCGGAGCTAGTTGAAGACAACAGATCTTGCCTACCTGAATCAACAGCGAAGC
196 TCTCTCAGTTGTAGCGGAGCTAGTTAAAGACAACAGATCTTGCCTACCTGAATCAACAGCGAAGC
* * * **
51294877 GGATCGAAGACACAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCTGGTTGAAGACAGTAGATCTTG
261 AGATCGAAGACACAAACCTTGCCTCCCTCAGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTG
* *
51294942 CCTTCCTGCATCGACAGCGAAGCGGAT
326 CCTTCCTACATCGACAGCGAAGCAGAT
* * * * * * * * *
51294969 CGAAGACACAAGCCTTGCCTCCCTCCGTTGTAGTGGATCTAGTTGAAGATAGTAGATTTTGCCTT
1 CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAATAGATCTTGCCTT
* * * * * * * * **
51295034 CCTGCATCGATAGGGAAGCAGATCAAAGACACAAGCCTTACCTCCCTCAGCAGTAGCGGAGC
66 CCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGC
51295096 AGATCGAAGA
Statistics
Matches: 428, Mismatches: 49, Indels: 2
0.89 0.10 0.00
Matches are distributed among these distances:
351 315 0.74
352 113 0.26
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (352 bp):
CGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGTTGAAGACAATAGATCTTGCCTT
CCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGG
TTAAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCC
TCTCTCAGTTGTAGCGGAGCTAGTTAAAGACAACAGATCTTGCCTACCTGAATCAACAGCGAAGC
AGATCGAAGACACAAACCTTGCCTCCCTCAGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTG
CCTTCCTACATCGACAGCGAAGCAGAT
Found at i:51295092 original size:439 final size:439
Alignment explanation
Indices: 51294267--51295095 Score: 1262
Period size: 439 Copynumber: 1.9 Consensus size: 439
51294257 ACAGATCAGC
51294267 GAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTC
1 GAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTC
* * *
51294332 CTACATTGGCAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGCTGGT
66 CTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAGCTAGT
* * **
51294397 TAAAGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
131 TAAAGACAACAGATCTTGCCTACCTGAATCAACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* * *
51294462 CTCTCGGTTGTAGCGGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATTGACAGTGAAGCA
196 CCCTCGGTTGTAGCGGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATCGACAGCGAAGCA
* ** *
51294527 GATTGAAGACACAAACCTTGCCTCTTTCAGTTGTAGTGGAGCTGGTTGAAGACAACAGATCTTGC
261 GATCGAAGACACAAACCTTGCCTCCCTCAGTTGTAGTGGAGCTAGTTGAAGACAACAGATCTTGC
* * * * * **
51294592 CTTCCTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCGGTTGTAGCGGAGC
326 CTTCCTACATCGACAGCGAAGCAGATCAAAGACACAAACCTTACCTCCCTCAGCAGTAGCGGAGC
51294657 TGGTTGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGTGCAGATT
391 TGGTTGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGTGCAGATT
* *
51294706 GAAGACACAAACCTTGCCTCTCTCTGTTGTAGCGGAGCTGGTTGAAGACAACAGATCTTGCCTTC
1 GAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTC
* *
51294771 CTGCATTGACAGCGAAGCAGATTGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAGCTAGT
66 CTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAGCTAGT
* * *
51294836 TGAAGACAACAGATCTTGCCTACCTGAATCAACAGCGAAGCGGATCGAAGACACAAGCCTTGCCT
131 TAAAGACAACAGATCTTGCCTACCTGAATCAACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
* * ** *
51294901 CCCTCGGTTGTAGTGGAGCTGGTTGAAGACAGTAGATCTTGCCTTCCTGCATCGACAGCGAAGCG
196 CCCTCGGTTGTAGCGGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATCGACAGCGAAGCA
* * * * ** *
51294966 GATCGAAGACACAAGCCTTGCCTCCCTCCGTTGTAGTGGATCTAGTTGAAGATAGTAGATTTTGC
261 GATCGAAGACACAAACCTTGCCTCCCTCAGTTGTAGTGGAGCTAGTTGAAGACAACAGATCTTGC
* * * *
51295031 CTTCCTGCATCGATAGGGAAGCAGATCAAAGACACAAGCCTTACCTCCCTCAGCAGTAGCGGAGC
326 CTTCCTACATCGACAGCGAAGCAGATCAAAGACACAAACCTTACCTCCCTCAGCAGTAGCGGAGC
51295096 AGATCGAAGA
Statistics
Matches: 346, Mismatches: 44, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
439 346 1.00
ACGTcount: A:0.27, C:0.25, G:0.24, T:0.24
Consensus pattern (439 bp):
GAAGACACAAACCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTGCCTTC
CTACATTGACAGCGAAGCAGATCGAAGACACAAACCTTGCCTCTCTCAGTTGTAGCGGAGCTAGT
TAAAGACAACAGATCTTGCCTACCTGAATCAACAGCGAAGCAGATCGAAGACACAAACCTTGCCT
CCCTCGGTTGTAGCGGAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATCGACAGCGAAGCA
GATCGAAGACACAAACCTTGCCTCCCTCAGTTGTAGTGGAGCTAGTTGAAGACAACAGATCTTGC
CTTCCTACATCGACAGCGAAGCAGATCAAAGACACAAACCTTACCTCCCTCAGCAGTAGCGGAGC
TGGTTGAAGACAATAGATCTTGCCTTCCTGCATTGACAGCGTGCAGATT
Found at i:51295328 original size:132 final size:132
Alignment explanation
Indices: 51295076--51295364 Score: 463
Period size: 132 Copynumber: 2.2 Consensus size: 132
51295066 AAGCCTTACC
* *
51295076 TCCCTCAGCAGTAGCGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGC
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGC
* * * ** *
51295141 AGATTTAAGCCATTAGTTCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAGGATTGCAGATTCTG
66 AGATTTAAGCCATTAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTCAAAGATTGCAGATTCTG
51295206 TCA
131 T-A
*
51295209 -CCCTAAGTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGC
1 TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGC
*
51295273 AGATTTAAGCCATTAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTCAAAGATTGTAGATTCTG
66 AGATTTAAGCCATTAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTCAAAGATTGCAGATTCTG
51295338 TA
131 TA
*
51295340 TCCCTAAGCAGTAATGGAGCAGATC
1 TCCCTAAGCAGTAGTGGAGCAGATC
51295365 AACAACGGCG
Statistics
Matches: 143, Mismatches: 12, Indels: 3
0.91 0.08 0.02
Matches are distributed among these distances:
131 1 0.01
132 142 0.99
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (132 bp):
TCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAGACAGTGGAGAAGC
AGATTTAAGCCATTAGTCCTATCTCCCTAAACAGTAGTGGAATAGGTCAAAGATTGCAGATTCTG
TA
Found at i:51295544 original size:99 final size:99
Alignment explanation
Indices: 51295381--51295565 Score: 280
Period size: 99 Copynumber: 1.9 Consensus size: 99
51295371 GGCGAATCTT
* * * * *
51295381 ACTTCCAAGCGATGCAGCGAAACAGATTGAAGTCACAACGGCGAATCTTGCATCTCCGACATTGC
1 ACTTCCAAGCAATGCAACGAAACAGATTGAAGTCACAACGACGAATCTTGCATCCCCAACATTGC
51295446 AATTCAAAAGATTGAAGCCACCACGACGAATATA
66 AATTCAAAAGATTGAAGCCACCACGACGAATATA
* * * *
51295480 ACTTGCAAGCAATGCAACGGAATAGATTGAAGTCACAACGACGAATCTTGCGTCCCCAACATTGC
1 ACTTCCAAGCAATGCAACGAAACAGATTGAAGTCACAACGACGAATCTTGCATCCCCAACATTGC
*
51295545 AATTCAAAAGATTGAGGCCAC
66 AATTCAAAAGATTGAAGCCAC
51295566 AACGGCAAAT
Statistics
Matches: 76, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
99 76 1.00
ACGTcount: A:0.36, C:0.25, G:0.19, T:0.19
Consensus pattern (99 bp):
ACTTCCAAGCAATGCAACGAAACAGATTGAAGTCACAACGACGAATCTTGCATCCCCAACATTGC
AATTCAAAAGATTGAAGCCACCACGACGAATATA
Found at i:51295567 original size:50 final size:49
Alignment explanation
Indices: 51295404--51295569 Score: 154
Period size: 50 Copynumber: 3.3 Consensus size: 49
51295394 GCAGCGAAAC
* * *
51295404 AGATTGAAGTCACAACGGCGAATCTTGCATCTCCGACATTGCAATTCAAA
1 AGATTGAAGCCACAACGACGAATCTTGC-TCTCCAACATTGCAATTCAAA
* * ** * * *** *
51295454 AGATTGAAGCCACCACGACGAATATAACT-TGCAAGCAATGCAACGGAAT
1 AGATTGAAGCCACAACGACGAATCTTGCTCTCCAA-CATTGCAATTCAAA
* *
51295503 AGATTGAAGTCACAACGACGAATCTTGCGTCCCCAACATTGCAATTCAAA
1 AGATTGAAGCCACAACGACGAATCTTGC-TCTCCAACATTGCAATTCAAA
*
51295553 AGATTGAGGCCACAACG
1 AGATTGAAGCCACAACG
51295570 GCAAATCTCA
Statistics
Matches: 86, Mismatches: 27, Indels: 6
0.72 0.23 0.05
Matches are distributed among these distances:
48 3 0.03
49 33 0.38
50 47 0.55
51 3 0.03
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (49 bp):
AGATTGAAGCCACAACGACGAATCTTGCTCTCCAACATTGCAATTCAAA
Found at i:51295635 original size:50 final size:50
Alignment explanation
Indices: 51295581--51295732 Score: 137
Period size: 50 Copynumber: 3.0 Consensus size: 50
51295571 CAAATCTCAT
* *
51295581 TTCCCTAGCGGTGTAGTGGAACAGATTGAAGCTACGATAGCGAATCTCGC
1 TTCCCTAGCGATGCAGTGGAACAGATTGAAGCTACGATAGCGAATCTCGC
* * ** * * * *
51295631 TTCCCCAAC-ATTGCAGTCAAATAGATTGAAGCTACAACAGCGAATCTCAC
1 TTCCCTAGCGA-TGCAGTGGAACAGATTGAAGCTACGATAGCGAATCTCGC
* * * * *
51295681 CTCCTTGGCGATACAGTGGAACAGATTGAAGCTACGAT-GACGAATCTTGC
1 TTCCCTAGCGATGCAGTGGAACAGATTGAAGCTACGATAG-CGAATCTCGC
51295731 TT
1 TT
51295733 TCCCAACATT
Statistics
Matches: 75, Mismatches: 24, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
49 1 0.01
50 73 0.97
51 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.24
Consensus pattern (50 bp):
TTCCCTAGCGATGCAGTGGAACAGATTGAAGCTACGATAGCGAATCTCGC
Found at i:51295642 original size:100 final size:100
Alignment explanation
Indices: 51295422--51295783 Score: 304
Period size: 100 Copynumber: 3.6 Consensus size: 100
51295412 GTCACAACGG
* * * * * * * * * * *
51295422 CGAATCTTGCATCTCCGACATTGCAATTCAAAAGATTGAAGCCACCACGACGAATATAACTT-GC
1 CGAATCTTGCTTCCCCAACATTGCAACTCAAAAGATTGAAGCCACAACGGCAAATCTCATTTCCC
* * * ** * * *
51295486 AAGCAATGCAACGGAATAGATTGAAG-TCACAACGA
66 TAGCGATACAGTGGAACAGATTGAAGCT-ACGATGA
* * *
51295521 CGAATCTTGCGTCCCCAACATTGCAATTCAAAAGATTGAGGCCACAACGGCAAATCTCATTTCCC
1 CGAATCTTGCTTCCCCAACATTGCAACTCAAAAGATTGAAGCCACAACGGCAAATCTCATTTCCC
* **
51295586 TAGCGGTGTAGTGGAACAGATTGAAGCTACGAT-A
66 TAGCGATACAGTGGAACAGATTGAAGCTACGATGA
* * * * * **
51295620 GCGAATCTCGCTTCCCCAACATTGC-AGTCAAATAGATTGAAGCTACAACAGCGAATCTCACCTC
1 -CGAATCTTGCTTCCCCAACATTGCAACTCAAA-AGATTGAAGCCACAACGGCAAATCTCATTTC
* *
51295684 CTTGGCGATACAGTGGAACAGATTGAAGCTACGATGA
64 CCTAGCGATACAGTGGAACAGATTGAAGCTACGATGA
* * * *
51295721 CGAATCTTGCTTTCCCAACATTGCAGCT-AAAAGATTGAAGCCGCAACGG-AGAATCTTATTTCC
1 CGAATCTTGCTTCCCCAACATTGCAACTCAAAAGATTGAAGCCACAACGGCA-AATCTCATTTCC
51295784 TCAACGAGAC
Statistics
Matches: 211, Mismatches: 45, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
99 83 0.39
100 125 0.59
101 3 0.01
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.23
Consensus pattern (100 bp):
CGAATCTTGCTTCCCCAACATTGCAACTCAAAAGATTGAAGCCACAACGGCAAATCTCATTTCCC
TAGCGATACAGTGGAACAGATTGAAGCTACGATGA
Found at i:51296155 original size:20 final size:22
Alignment explanation
Indices: 51296117--51296159 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 22
51296107 TTGGCTCTCT
51296117 GCCACCGCCGCCATTGTCACGTC
1 GCCACCGCCGCCA-TGTCACGTC
51296140 GCCACCGCCG-CA-GTCACGTC
1 GCCACCGCCGCCATGTCACGTC
51296160 ACCAGTACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 8 0.40
22 2 0.10
23 10 0.50
ACGTcount: A:0.14, C:0.49, G:0.23, T:0.14
Consensus pattern (22 bp):
GCCACCGCCGCCATGTCACGTC
Found at i:51297062 original size:3 final size:3
Alignment explanation
Indices: 51297054--51297084 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
51297044 ATATTTTAGC
51297054 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
51297085 CCTACTTATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:51297216 original size:20 final size:21
Alignment explanation
Indices: 51297193--51297242 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
51297183 TATATATTTT
51297193 TACATATTTTACAAAT-TATA
1 TACATATTTTACAAATCTATA
* * *
51297213 TACATA-TCTATATATCTATA
1 TACATATTTTACAAATCTATA
51297233 TACATATTTT
1 TACATATTTT
51297243 TATTTTTCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
19 6 0.25
20 16 0.67
21 2 0.08
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (21 bp):
TACATATTTTACAAATCTATA
Found at i:51297454 original size:18 final size:18
Alignment explanation
Indices: 51297433--51297482 Score: 52
Period size: 18 Copynumber: 2.8 Consensus size: 18
51297423 TTTATTTAAG
51297433 TGTTTTAATTT-TTTTATT
1 TGTTTT-ATTTATTTTATT
51297451 TG-TTTATTTACTTTTATT
1 TGTTTTATTTA-TTTTATT
*
51297469 TG-TTGATTTATTTT
1 TGTTTTATTTATTTT
51297483 CATTATATAT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
16 4 0.14
17 7 0.24
18 18 0.62
ACGTcount: A:0.16, C:0.02, G:0.08, T:0.74
Consensus pattern (18 bp):
TGTTTTATTTATTTTATT
Found at i:51297879 original size:110 final size:109
Alignment explanation
Indices: 51297604--51298545 Score: 1537
Period size: 110 Copynumber: 8.6 Consensus size: 109
51297594 AAAAAAATTC
*
51297604 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
* *
51297669 TTTCTCGTTTAACTAAATGGCTTAATATCCTTTT-AAAATTTTA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
* * * * *
51297712 AAATAAGGTAATGTTTTGCGATTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTTTCAAT
1 AAATAAGGCAATGTTTTGCG-TTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
51297777 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
65 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
*
51297822 AAATAAGGCAATGTTTTGCGATTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
1 AAATAAGGCAATGTTTTGCG-TTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
* *
51297887 TTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCA
65 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
* *
51297932 AAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
*
51297997 TTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTT-AAAAATTTTA
* *
51298042 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCAATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
*
51298107 TTTCTCGTTCAACCAAATGACTTAATATCCTTTTAAAAATTTTA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
**
51298151 AAATAAGGCAATGTTTTGCAATTGGAAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
1 AAATAAGGCAATGTTTTGCGTTTGG-AAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
*
51298216 TTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
65 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
* * *
51298261 AAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGTCCTAATGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
*
51298326 TTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTT-AAAAATTTTA
*
51298371 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
* *
51298436 TTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTT-AAAAATTTTA
* * * *
51298481 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGCGCTGGGTTTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
51298545 T
66 T
51298546 CTCGATTGAC
Statistics
Matches: 782, Mismatches: 47, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
108 19 0.02
109 278 0.36
110 485 0.62
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (109 bp):
AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTA
Found at i:51298006 original size:219 final size:219
Alignment explanation
Indices: 51297604--51298545 Score: 1550
Period size: 219 Copynumber: 4.3 Consensus size: 219
51297594 AAAAAAATTC
*
51297604 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
* * *
51297669 TTTCTCGTTTAACTAAATGGCTTAATATCCTTTT-AAAATTTTAAAATAAGGTAATGTTTTGCGA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGC-A
* * * *
51297733 TTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTTTCAATTTTTCTCGTTCAACCAAATGG
130 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGG
*
51297798 CTTAATATCCTTTT-AAAAATTTTA
195 CTAAATATCCTTTTAAAAAATTTTA
*
51297822 AAATAAGGCAATGTTTTGCGATTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
1 AAATAAGGCAATGTTTTGCG-TTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGAT
* *
51297887 TTTTCTCATTCAACCAAATGGCTTAATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCA
65 TTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCA
* * *
51297952 TTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTGTCGATTTTTCTCGTTCAACCAAATGG
130 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGG
51298017 CTAAATATCCTTTTAAAAAATTTTA
195 CTAAATATCCTTTTAAAAAATTTTA
* *
51298042 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCAATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
* *
51298107 TTTCTCGTTCAACCAAATGACTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCAA
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCAT
*
51298172 TTGGAAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGG
131 TTGG-AAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGG
*
51298237 CTTAATATCCTTTT-AAAAATTTTA
195 CTAAATATCCTTTTAAAAAATTTTA
* * *
51298261 AAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGTCCTAATGTGCTGGGTGTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
* *
51298326 TTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTAAAATAAGGCAATGTTTTGCG
66 TTTCTCGTTCAACCAAATGGCTTAATATCCTTTT-AAAAATTTTAAAATAAGGCAATGTTTTGCA
51298391 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGG
130 TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGG
51298456 CTAAATATCCTTTTAAAAAATTTTA
195 CTAAATATCCTTTTAAAAAATTTTA
* * * *
51298481 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGCGCTGGGTTTCGATT
1 AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
51298545 T
66 T
51298546 CTCGATTGAC
Statistics
Matches: 679, Mismatches: 39, Indels: 11
0.93 0.05 0.02
Matches are distributed among these distances:
218 20 0.03
219 456 0.67
220 203 0.30
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (219 bp):
AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATT
TTTCTCGTTCAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCAT
TTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGGC
TAAATATCCTTTTAAAAAATTTTA
Found at i:51298201 original size:329 final size:328
Alignment explanation
Indices: 51297595--51298545 Score: 1631
Period size: 329 Copynumber: 2.9 Consensus size: 328
51297585 AAAATGAAAA
* * *
51297595 AAAAAATTC-AAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
* * * *
51297659 GGTGTCGATTTTTCTCGTTTAACTAAATGGCTTAATATCCTTTT--AAAATTTTAAAATAAGGTA
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTAAAATAAGGCA
* *
51297722 ATGTTTTGCGATTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTTTCAATTTTTCTCGTT
131 ATGTTTTGCG-TTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCAATTTTTCTCGTT
51297787 CAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGATTGGGAAAT
195 CAACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGATT-GGAAAT
51297852 TCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATC
259 TCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATC
51297917 CTTTT
324 CTTTT
*
51297922 AAAAATTTCAAAATAAGGCAATGTTTTGCATTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
51297987 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTAAAATAAGGCA
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTAAAATAAGGCA
51298052 ATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCAATTTTTCTCGTTC
131 ATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCAATTTTTCTCGTTC
* *
51298117 AACCAAATGACTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCAATTGGAAAATT
196 AACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGATTGG-AAATT
51298182 CGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATCC
260 CGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATCC
51298247 TTTT
325 TTTT
* * *
51298251 AAAAATTTTAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGTCCTAATGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
51298316 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTAAAATAAGGCA
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTAAAATAAGGCA
* *
51298381 ATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTC
131 ATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCAATTTTTCTCGTTC
* *
51298446 AACCAAATGGCTAAATATCCTTTTAAAAAATTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATT
196 AACCAAATGGCTTAATATCCTTTT-AAAAATTTTAAAATAAGGCAATGTTTTGCGATTGGAAATT
* * * *
51298511 CGAG-GAACGTGCCCTAATGCGCTGGGTTTCGATTT
260 CGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTT
51298546 CTCGATTGAC
Statistics
Matches: 593, Mismatches: 26, Indels: 9
0.94 0.04 0.01
Matches are distributed among these distances:
327 8 0.01
328 122 0.21
329 402 0.68
330 61 0.10
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.34
Consensus pattern (328 bp):
AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTAAAATAAGGCA
ATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCAATTTTTCTCGTTC
AACCAAATGGCTTAATATCCTTTTAAAAATTTTAAAATAAGGCAATGTTTTGCGATTGGAAATTC
GAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTTAATATCCT
TTT
Found at i:51301566 original size:15 final size:15
Alignment explanation
Indices: 51301546--51301578 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
51301536 AATCATTGGG
51301546 TTGAGCCTGAAAAGT
1 TTGAGCCTGAAAAGT
*
51301561 TTGAGCCTGAAAGGT
1 TTGAGCCTGAAAAGT
51301576 TTG
1 TTG
51301579 TCAACAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (15 bp):
TTGAGCCTGAAAAGT
Found at i:51303451 original size:23 final size:23
Alignment explanation
Indices: 51303385--51303452 Score: 118
Period size: 23 Copynumber: 3.0 Consensus size: 23
51303375 CCACACTAAT
*
51303385 ATGTAGCCGAAGCTACCACTGAT
1 ATGTAGCCGAAGCTACCACTGAA
*
51303408 ATGTAGCCGCAGCTACCACTGAA
1 ATGTAGCCGAAGCTACCACTGAA
51303431 ATGTAGCCGAAGCTACCACTGA
1 ATGTAGCCGAAGCTACCACTGA
51303453 TCAATAACAC
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 42 1.00
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (23 bp):
ATGTAGCCGAAGCTACCACTGAA
Found at i:51309371 original size:20 final size:20
Alignment explanation
Indices: 51309346--51309386 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
51309336 AATATTTTCT
*
51309346 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
51309366 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
51309386 A
1 A
51309387 CATTTTACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.51, C:0.12, G:0.10, T:0.27
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:51312047 original size:23 final size:23
Alignment explanation
Indices: 51312021--51312073 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
51312011 TATTCGATTT
*
51312021 ATTTAAATT-ATTCGAATTTAAAA
1 ATTTAAATTGATTCGAACTT-AAA
* *
51312044 ATTTAACTTGATTTGAACTTAAA
1 ATTTAAATTGATTCGAACTTAAA
51312067 ATTTAAA
1 ATTTAAA
51312074 AAAATTTCGA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
23 17 0.68
24 8 0.32
ACGTcount: A:0.45, C:0.06, G:0.06, T:0.43
Consensus pattern (23 bp):
ATTTAAATTGATTCGAACTTAAA
Found at i:51313838 original size:15 final size:15
Alignment explanation
Indices: 51313818--51313850 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
51313808 AATCATTGGG
51313818 TTGAGCCTGAAAAGT
1 TTGAGCCTGAAAAGT
*
51313833 TTGAGCCTGAAAGGT
1 TTGAGCCTGAAAAGT
51313848 TTG
1 TTG
51313851 TCAACAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (15 bp):
TTGAGCCTGAAAAGT
Found at i:51319265 original size:35 final size:34
Alignment explanation
Indices: 51319221--51319308 Score: 104
Period size: 35 Copynumber: 2.5 Consensus size: 34
51319211 ACCTACTTTT
*
51319221 AAAGAGTTGGGATAGACCACTCTATGCCAACCTTAA
1 AAAG-GTTGGGATAGACCA-TCTAAGCCAACCTTAA
* * *
51319257 AAAGGTTGGGATTGACTCATCTAAGGCAACTTTAA
1 AAAGGTTGGGATAGAC-CATCTAAGCCAACCTTAA
*
51319292 ACAGGTTGGGATAGACC
1 AAAGGTTGGGATAGACC
51319309 TTACCTGGGC
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
34 1 0.02
35 38 0.84
36 6 0.13
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (34 bp):
AAAGGTTGGGATAGACCATCTAAGCCAACCTTAA
Found at i:51324124 original size:82 final size:82
Alignment explanation
Indices: 51323999--51324498 Score: 768
Period size: 82 Copynumber: 6.1 Consensus size: 82
51323989 CATGGGGATG
* * * ** * * *
51323999 AGATTTGTGTTTTTAGTCTGCTCCACTACTATTTAGGGAGATAAGACTGGATGTGATCTACTCCA
1 AGATCTGTGGTTTT-GTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCA
*
51324064 CTACTACTTAGGGAGATA
65 CTACTGCTTAGGGAGATA
* *
51324082 AGATCTGTGGTTTCGTCTACTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
51324147 TACTGCTTAGGGAGATA
66 TACTGCTTAGGGAGATA
* *
51324164 AGATCTGTGGTTTCGTCCGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
*
51324229 TATTGCTTAGGGAGATA
66 TACTGCTTAGGGAGATA
*
51324246 AGATCTGTGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
* *
51324311 TATTACTTAGGGAGATA
66 TACTGCTTAGGGAGATA
* * *
51324328 AGATCTGTGGTTTTGTCCGCTTCGCTACTGCTTAGGGAGATAAGACTTAATGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
*
51324393 TACTGCTTAGAGAGATA
66 TACTGCTTAGGGAGATA
* * *
51324410 AGATCTATGGTTTTGTCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGCGATCTGCTCCAC
1 AGATCTGTGGTTTTGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
51324475 TACTGCTTAGGGAGATA
66 TACTGCTTAGGGAGATA
51324492 AGA-CTGT
1 AGATCTGT
51324499 AATCTTCGAT
Statistics
Matches: 384, Mismatches: 33, Indels: 2
0.92 0.08 0.00
Matches are distributed among these distances:
81 3 0.01
82 370 0.96
83 11 0.03
ACGTcount: A:0.23, C:0.20, G:0.25, T:0.32
Consensus pattern (82 bp):
AGATCTGTGGTTTTGTCTGCTCCGCTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCAC
TACTGCTTAGGGAGATA
Found at i:51324706 original size:134 final size:133
Alignment explanation
Indices: 51324538--51325182 Score: 924
Period size: 134 Copynumber: 4.8 Consensus size: 133
51324528 GGAAGTAAGA
* * * * *
51324538 TTATTGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCCGTCATATTCGATCTGCTT
1 TTATCGGCTTCAATGTACTCCACTGT-A-GTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
*
51324603 CTCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAG
64 CTCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC-AATACAGGGAG
51324668 ATAGAG
128 ATAGAG
* *
51324674 TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATCAATCTGCTTCT
1 TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCT
* * *
51324739 TTACCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAA-CCAGGGAGATA
66 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAATACAGGGAGATA
51324803 GAG
131 GAG
* * *
51324806 TTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGTCATCTTCGATCTACTC
1 TTATCGGCTTCAATGTACTCCACTGTAGT--CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT
* * *** * * ** * **
51324871 CACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG-CTGT-CTAGGGAG
64 CTCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAATAC-AGGGAG
*
51324932 ACAGAG
128 ATAGAG
51324938 TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCT
1 TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCT
51325003 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGGGAGAT
66 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC-AATACAGGGAGAT
51325068 AGAG
130 AGAG
51325072 TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCG
1 TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTC-
51325137 T-TGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTACTTCC
65 TCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCC
51325183 TACCAATATA
Statistics
Matches: 452, Mismatches: 46, Indels: 23
0.87 0.09 0.04
Matches are distributed among these distances:
130 34 0.08
131 4 0.01
132 150 0.33
133 5 0.01
134 227 0.50
135 7 0.02
136 25 0.06
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (133 bp):
TTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTCT
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAATACAGGGAGATA
GAG
Found at i:51324886 original size:44 final size:44
Alignment explanation
Indices: 51324838--51324932 Score: 120
Period size: 44 Copynumber: 2.2 Consensus size: 44
51324828 CTGTAGTCAC
* * *
51324838 AGGGAGGTAAAATCTGTCATCTTCGATCTACTCCACTACTG-CTT
1 AGGGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGTC-T
* * *
51324882 AGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTGTCT
1 AGGGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGTCT
51324926 AGGGAGA
1 AGGGAGA
51324933 CAGAGTTATC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
44 43 0.98
45 1 0.02
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (44 bp):
AGGGAGATAAAATCTGTAATCTTCAATCTACTCCACTACTGTCT
Found at i:51325001 original size:264 final size:269
Alignment explanation
Indices: 51324538--51325182 Score: 919
Period size: 264 Copynumber: 2.4 Consensus size: 269
51324528 GGAAGTAAGA
* * * * * *
51324538 TTATTGGCTTCAATGTACTCCACTGTAATCTCAGGGAGGTAAAATCCGTCATATTCGATCTGCTT
1 TTATCGGCTTCAATGTACTCCACTGTAGTC-CAGGGAGGTAAAATCTGTCATCTTCGATCTACTC
* * *
51324603 CTCTGCCAAATACAGGAAGGCAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAG
65 CACTGACAAATACAGGAAGACAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAG
*
51324668 ATAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATCAATCT
130 ACAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATCAATCT
* *
51324733 GCTTCTTTACCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCC-AA-CCAG
195 GCTTCTCTACCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAG
51324796 GGAGATAGAG
260 GGAGATAGAG
51324806 TTATCGGCTTCAATGTACTCCACTGTAGTCACAGGGAGGTAAAATCTGTCATCTTCGATCTACTC
1 TTATCGGCTTCAATGTACTCCACTGTAGTC-CAGGGAGGTAAAATCTGTCATCTTCGATCTACTC
*** * * * **
51324871 CACT-ACTGCT-TAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTG-C-TGT-CTAGGGA
65 CACTGACAAATACAGGAAGACAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATAC-AGGGA
* *
51324931 GACAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCTTCGATC
129 GACAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATCAATC
*
51324996 TGCTTCTCTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
194 TGCTTCTCTACCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACA
51325061 GGGAGATAGAG
259 GGGAGATAGAG
* * *
51325072 TTATCGGCTTCAATGTACTCCACTGTAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTTC
1 TTATCGGCTTCAATGTACTCCACTGTAGTCCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCC
** * * *
51325136 GTTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTACTTCC
66 ACTGACAAATACAGGAAGACAAGATCTGTAATCTTCAATCTA-TTCC
51325183 TACCAATATA
Statistics
Matches: 333, Mismatches: 38, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
263 1 0.00
264 157 0.47
265 5 0.02
266 103 0.31
267 6 0.02
268 61 0.18
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (269 bp):
TTATCGGCTTCAATGTACTCCACTGTAGTCCAGGGAGGTAAAATCTGTCATCTTCGATCTACTCC
ACTGACAAATACAGGAAGACAAGATCTGTAATCTTCAATCTATTCCACTGCCAAATACAGGGAGA
CAGAGTTATCGGCTTCAATGTACTCCACTGTAGTCAGGGAGGTAAAATCTGCCATCATCAATCTG
CTTCTCTACCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCACTGCCAAATACAGG
GAGATAGAG
Found at i:51325053 original size:46 final size:46
Alignment explanation
Indices: 51325003--51325182 Score: 120
Period size: 46 Copynumber: 4.0 Consensus size: 46
51324993 ATCTGCTTCT
51325003 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
* ** * * ** * *
51325049 CTGCCAAATACAGGGAGATAGAGTTAT-C-GGCTTCAATGTACTCCA
1 CTGCCAAATACAGGAAGGCA-AGATCTGCAATCTTCAATCTATTCCA
* * * * * * * * *
51325094 CTG--TAGT-CAGGGAGGTAAAATCTGCCATCTTCGATCTGCTT-CG
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCT-ATTCCA
*
51325137 TTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTACTTCC
1 CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA-TTCC
51325183 TACCAATATA
Statistics
Matches: 94, Mismatches: 31, Indels: 17
0.66 0.22 0.12
Matches are distributed among these distances:
41 3 0.03
42 10 0.11
43 12 0.13
44 1 0.01
45 18 0.19
46 45 0.48
47 5 0.05
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.26
Consensus pattern (46 bp):
CTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTATTCCA
Found at i:51325214 original size:44 final size:45
Alignment explanation
Indices: 51325113--51325565 Score: 368
Period size: 44 Copynumber: 10.3 Consensus size: 45
51325103 GGGAGGTAAA
* * ** * * *
51325113 ATCTGCCATCTTCGATCTGCTTCGTTGCCAAATACAGGAAGGCAAG
1 ATCTGCTATCTTCGATCTACTTCACTACC-AATATAGGAAGACAAG
* * *
51325159 ATCTGCAATCTTCAATCTACTTC-CTACCAATATAGGAAGACAGG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
* * * *
51325203 ACCTGCTATCTTCGATCTACTTCAC-GCCAATACAAGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * * * *
51325247 TTTTGCTTTCTTCGATCCAC-TCCCTACCAATATAGGGAGACAGG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * *
51325291 ACCTGTTATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
* * * *
51325335 ATCTGC-ATCTTGGATCCACTTC-CTATCAATATAGGAAGACAGG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * * * *
51325378 ACCAGCCATCTTCGATCTACTTCAC-GCCAATACATGAAGATAAG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * *
51325422 ATCTTCTTTCTTTGATCTACTTCACTACCAGTATGGGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
* *
51325467 ATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
* * * * * *
51325510 ACCTGCTATTTTTGATCTACTTCAC-GCCAATACATGAAGACAAG
1 ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
*
51325554 ATCTGCTTTCTT
1 ATCTGCTATCTT
51325566 TTATGACTTC
Statistics
Matches: 311, Mismatches: 87, Indels: 20
0.74 0.21 0.05
Matches are distributed among these distances:
42 1 0.00
43 58 0.19
44 205 0.66
45 27 0.09
46 20 0.06
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (45 bp):
ATCTGCTATCTTCGATCTACTTCACTACCAATATAGGAAGACAAG
Found at i:51325235 original size:88 final size:88
Alignment explanation
Indices: 51325115--51325532 Score: 437
Period size: 88 Copynumber: 4.7 Consensus size: 88
51325105 GAGGTAAAAT
* ** * * * * *
51325115 CTGCCATCTTCGATCTGCTTCGTTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTACT
1 CTGCCATCTTCGATCTACTTC-ACGCC-AATACATGAAGACAAGATCTGCTATCTTCGATCCACT
51325180 TCCTACCAATATAGGAAGACAGGAC
64 TCCTACCAATATAGGAAGACAGGAC
* * * * * *
51325205 CTGCTATCTTCGATCTACTTCACGCCAATACAAGAAGACAAGTTTTGCTTTCTTCGATCCACTCC
1 CTGCCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCCACTTC
*
51325270 CTACCAATATAGGGAGACAGGAC
66 CTACCAATATAGGAAGACAGGAC
** *
51325293 CTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGC-ATCTTGGATCCACTTC
1 CTGCCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCCACTTC
*
51325357 CTATCAATATAGGAAGACAGGAC
66 CTACCAATATAGGAAGACAGGAC
* * * * * *
51325380 CAGCCATCTTCGATCTACTTCACGCCAATACATGAAGATAAGATCTTCTTTCTTTGATCTACTTC
1 CTGCCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCCACTTC
* * * *
51325445 ACTACCAGTATGGGAAGACAAGAT
66 -CTACCAATATAGGAAGACAGGAC
* * * * * * * * *
51325469 CTG-CATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGACCTGCTATTTTTGATCTACTT
1 CTGCCATCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTATCTTCGATCCACTT
51325532 C
65 C
51325533 ACGCCAATAC
Statistics
Matches: 278, Mismatches: 47, Indels: 8
0.83 0.14 0.02
Matches are distributed among these distances:
87 78 0.28
88 158 0.57
89 23 0.08
90 19 0.07
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (88 bp):
CTGCCATCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTATCTTCGATCCACTTC
CTACCAATATAGGAAGACAGGAC
Found at i:51325479 original size:175 final size:178
Alignment explanation
Indices: 51325113--51325488 Score: 476
Period size: 175 Copynumber: 2.1 Consensus size: 178
51325103 GGGAGGTAAA
* ** * *
51325113 ATCTGCCATCTTCGATCTGCTTCGTTGCCAAATACAGGAAGGCAAGATCTGCAATCTTCAATCTA
1 ATCTGCCATCTTCGATCTACTTCGACGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCCA
* *
51325178 CTTCCTACCAATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCACGCCAATACAAGAAGA
66 CTTCCTACCAATATAGGAAGACAGGACCAGCCATCTTCGATCTACTTCACGCCAATACAAGAAGA
* * *
51325243 CAAGTTTTGCTTTCTTCGATCCACTCCCTACCAATATAGGGAGACAGG
131 CAAGTCTTGCTTTCTTCGATCCACTCACTACCAATATAGGGAGACAAG
* ** * **
51325291 ACCTGTTATCTTCGATCTACTTC-ACGCC-AATACATGAAGACAAGATCTGC-ATCTTGGATCCA
1 ATCTGCCATCTTCGATCTACTTCGACGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCCA
* *
51325353 CTTCCTATCAATATAGGAAGACAGGACCAGCCATCTTCGATCTACTTCACGCCAATACATGAAGA
66 CTTCCTACCAATATAGGAAGACAGGACCAGCCATCTTCGATCTACTTCACGCCAATACAAGAAGA
* * * *
51325418 TAAGATCTT-CTTTCTTTGATCTACTTCACTACCAGTAT-GGGAAGACAAG
131 CAAG-TCTTGCTTTCTTCGATCCAC-TCACTACCAATATAGGG-AGACAAG
*
51325467 ATCTG-CATCTTCGATCCACTTC
1 ATCTGCCATCTTCGATCTACTTC
51325489 CTACCAATAT
Statistics
Matches: 170, Mismatches: 25, Indels: 9
0.83 0.12 0.04
Matches are distributed among these distances:
175 104 0.61
176 44 0.26
177 3 0.02
178 19 0.11
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (178 bp):
ATCTGCCATCTTCGATCTACTTCGACGCCAAATACAGGAAGACAAGATCTGCAATCTTCAATCCA
CTTCCTACCAATATAGGAAGACAGGACCAGCCATCTTCGATCTACTTCACGCCAATACAAGAAGA
CAAGTCTTGCTTTCTTCGATCCACTCACTACCAATATAGGGAGACAAG
Found at i:51325497 original size:132 final size:132
Alignment explanation
Indices: 51325326--51325566 Score: 410
Period size: 132 Copynumber: 1.8 Consensus size: 132
51325316 GCCAATACAT
* *
51325326 GAAGACAAGATCTGCATCTTGGATCCACTTCCTATCAATATAGGAAGACAGGACCAGCCATCTTC
1 GAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCAGCCATCTTC
* *
51325391 GATCTACTTCACGCCAATACATGAAGATAAGATCTTCTTTCTTTGATCTACTTCACTACCAGTAT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCACTACCAGTAT
51325456 GG
131 GG
* * * *
51325458 GAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTATTTTT
1 GAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCAGCCATCTTC
51325523 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTT
66 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTT
51325567 TATGACTTCA
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
132 101 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (132 bp):
GAAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCAGCCATCTTC
GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTTGATCTACTTCACTACCAGTAT
GG
Found at i:51327122 original size:15 final size:15
Alignment explanation
Indices: 51327094--51327123 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
51327084 TAGTTTTTTT
51327094 TCTTTTTATTTTTGC
1 TCTTTTTATTTTTGC
*
51327109 TCTTTTTTTTTTTGC
1 TCTTTTTATTTTTGC
51327124 CTCCACTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.13, G:0.07, T:0.77
Consensus pattern (15 bp):
TCTTTTTATTTTTGC
Found at i:51328503 original size:62 final size:62
Alignment explanation
Indices: 51328401--51328582 Score: 275
Period size: 62 Copynumber: 3.0 Consensus size: 62
51328391 CTAAACTCGA
* **
51328401 CGTACTTTTGGATTTTAGGAAATTTATTATATAAAATGAAATGTAATGTTGATGCATGAATG
1 CGTATTTTTGGATTTTAGGAAATTTATTATATGCAATGAAATGTAATGTTGATGCATGAATG
*
51328463 CGTATTTTTGAATTTTAGGAAATTTATTATATGCAATGAAATGTAATGTTGATGCATGAATG
1 CGTATTTTTGGATTTTAGGAAATTTATTATATGCAATGAAATGTAATGTTGATGCATGAATG
* *
51328525 TGTATTTTTGGATTTTAGGAAA--T-TTAT-TGC-ATGCAATGTAATGTTGATGCATGAATG
1 CGTATTTTTGGATTTTAGGAAATTTATTATATGCAATGAAATGTAATGTTGATGCATGAATG
51328582 C
1 C
51328583 AAAAAGAGAC
Statistics
Matches: 112, Mismatches: 8, Indels: 5
0.90 0.06 0.04
Matches are distributed among these distances:
57 26 0.23
58 3 0.03
59 4 0.04
60 1 0.01
62 78 0.70
ACGTcount: A:0.32, C:0.05, G:0.20, T:0.42
Consensus pattern (62 bp):
CGTATTTTTGGATTTTAGGAAATTTATTATATGCAATGAAATGTAATGTTGATGCATGAATG
Found at i:51335813 original size:15 final size:15
Alignment explanation
Indices: 51335793--51335825 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
51335783 AATCATTGGG
51335793 TTGAGCCTGAAAAGT
1 TTGAGCCTGAAAAGT
*
51335808 TTGAGCCTGAAAGGT
1 TTGAGCCTGAAAAGT
51335823 TTG
1 TTG
51335826 TCAACAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (15 bp):
TTGAGCCTGAAAAGT
Found at i:51339328 original size:31 final size:31
Alignment explanation
Indices: 51339235--51339330 Score: 165
Period size: 31 Copynumber: 3.1 Consensus size: 31
51339225 GGCAAATTAC
*
51339235 AAGAGTAATTGAATCCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
51339266 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
*
51339298 AAGGGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
51339329 AA
1 AA
51339331 ATTATCTAAG
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
31 33 0.53
32 29 0.47
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:51342498 original size:22 final size:21
Alignment explanation
Indices: 51342472--51342563 Score: 64
Period size: 22 Copynumber: 4.3 Consensus size: 21
51342462 GTAGGCAACT
51342472 TTTTTTTGCGCTTTTTTTTGC
1 TTTTTTTGCGCTTTTTTTTGC
*
51342493 -TTTTTTGCTTCTTCTTTTTTGC
1 TTTTTTTGC-GCTT-TTTTTTGC
** * *
51342515 GCTTTTTACTCTTTCTTTTTGC
1 TTTTTTTGCGCTTT-TTTTTGC
* *
51342537 GCTTTTTT--GCTTTTTTTTGT
1 -TTTTTTTGCGCTTTTTTTTGC
51342557 TTTTTTT
1 TTTTTTT
51342564 TGCTGTTTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 12
0.74 0.10 0.15
Matches are distributed among these distances:
19 6 0.10
20 14 0.24
21 8 0.14
22 19 0.33
23 11 0.19
ACGTcount: A:0.01, C:0.15, G:0.11, T:0.73
Consensus pattern (21 bp):
TTTTTTTGCGCTTTTTTTTGC
Found at i:51342552 original size:10 final size:10
Alignment explanation
Indices: 51342470--51342589 Score: 84
Period size: 10 Copynumber: 11.5 Consensus size: 10
51342460 AGGTAGGCAA
51342470 CTTTTTTTTGCG
1 CTTTTTTTT--G
51342482 CTTTTTTTTG
1 CTTTTTTTTG
51342492 CTTTTTTGCTT-
1 CTTTTTT--TTG
51342503 CTTCTTTTTTGCG
1 CTT-TTTTTT--G
**
51342516 CTTTTTACT-
1 CTTTTTTTTG
51342525 CTTTCTTTTTG
1 CTTT-TTTTTG
**
51342536 CGCTTTTTTG
1 CTTTTTTTTG
51342546 CTTTTTTTTG
1 CTTTTTTTTG
*
51342556 TTTTTTTTTG
1 CTTTTTTTTG
* *
51342566 C-TGTTTTTA
1 CTTTTTTTTG
51342575 CTTTTTTTTG
1 CTTTTTTTTG
51342585 CTTTT
1 CTTTT
51342590 ATTTAAAGAA
Statistics
Matches: 85, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
9 11 0.13
10 47 0.55
11 5 0.06
12 19 0.22
13 3 0.04
ACGTcount: A:0.02, C:0.15, G:0.11, T:0.72
Consensus pattern (10 bp):
CTTTTTTTTG
Found at i:51342563 original size:29 final size:29
Alignment explanation
Indices: 51342530--51342589 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
51342520 TTACTCTTTC
* * *
51342530 TTTTTGCGCT-TTTTTGCTTTTTTTTGTT
1 TTTTTTCGCTGTTTTTACTTTTTTTTGCT
*
51342558 TTTTTTTGCTGTTTTTACTTTTTTTTGCT
1 TTTTTTCGCTGTTTTTACTTTTTTTTGCT
51342587 TTT
1 TTT
51342590 ATTTAAAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
28 8 0.30
29 19 0.70
ACGTcount: A:0.02, C:0.10, G:0.12, T:0.77
Consensus pattern (29 bp):
TTTTTTCGCTGTTTTTACTTTTTTTTGCT
Found at i:51342594 original size:20 final size:19
Alignment explanation
Indices: 51342539--51342594 Score: 67
Period size: 19 Copynumber: 2.8 Consensus size: 19
51342529 CTTTTTGCGC
**
51342539 TTTTTTGCTTTTTTTTGTTT
1 TTTTTTGC-TTTTTTTACTT
*
51342559 TTTTTTGCTGTTTTTACTT
1 TTTTTTGCTTTTTTTACTT
51342578 TTTTTTGCTTTTATTTA
1 TTTTTTGCTTTT-TTTA
51342595 AAGAATAAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 19 0.61
20 12 0.39
ACGTcount: A:0.05, C:0.07, G:0.09, T:0.79
Consensus pattern (19 bp):
TTTTTTGCTTTTTTTACTT
Found at i:51343235 original size:31 final size:31
Alignment explanation
Indices: 51343142--51343237 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
51343132 GGCAAATTAC
* *
51343142 AAGAGTAATTGAATTCTAATAAAACTCTTTC
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
51343173 AAGAGTAATTGAATCCTAATAAAAACTCTTTA
1 AAGAGTAATTGAATCCTAAT-AAAACTCTTTA
*
51343205 AAGGGTAATTGAATCCTAATAAAACTCTTTA
1 AAGAGTAATTGAATCCTAATAAAACTCTTTA
51343236 AA
1 AA
51343238 ATTATCTAAG
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
31 32 0.52
32 29 0.48
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.32
Consensus pattern (31 bp):
AAGAGTAATTGAATCCTAATAAAACTCTTTA
Found at i:51345440 original size:19 final size:19
Alignment explanation
Indices: 51345412--51345453 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
51345402 CATGTATAAA
51345412 TTTTAGTTTTTTATTTCAT
1 TTTTAGTTTTTTATTTCAT
* *
51345431 TTTTATTTTTTTATTTTAT
1 TTTTAGTTTTTTATTTCAT
51345450 TTTT
1 TTTT
51345454 CTTATATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.81
Consensus pattern (19 bp):
TTTTAGTTTTTTATTTCAT
Found at i:51345813 original size:7 final size:7
Alignment explanation
Indices: 51345801--51345839 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
51345791 ATGACCCTTG
51345801 AAACCCT
1 AAACCCT
51345808 AAACCCT
1 AAACCCT
51345815 AAATCCCT
1 AAA-CCCT
*
51345823 AACCCCT
1 AAACCCT
*
51345830 AACCCCT
1 AAACCCT
51345837 AAA
1 AAA
51345840 TCCCCCTAAC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.41, C:0.44, G:0.00, T:0.15
Consensus pattern (7 bp):
AAACCCT
Found at i:51346465 original size:41 final size:41
Alignment explanation
Indices: 51346420--51346573 Score: 177
Period size: 41 Copynumber: 3.8 Consensus size: 41
51346410 TTTTATTATT
* *
51346420 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGGCTCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* ** * *
51346461 ATTAGCGACGCTACTTC-AAAACGCCGCTAAAGTCCCAAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* * *
51346501 ATTAGTGGCACTTTTTCAAAAACACCGCTAAA-GCCCTGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCC-GAGC
* *
51346542 AGTAGCAGCGCTTTTTCAAAAACGCCGCTAAA
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAA
51346574 AATGCCGCTA
Statistics
Matches: 91, Mismatches: 20, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
40 34 0.37
41 57 0.63
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:51346560 original size:81 final size:82
Alignment explanation
Indices: 51346420--51346573 Score: 197
Period size: 81 Copynumber: 1.9 Consensus size: 82
51346410 TTTTATTATT
* ** * *
51346420 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGGCTCGAGCATTAGCGACGCTACTTC-AAAACG
1 ATTAGCGGCACTTTTTCAAAAACACCGCTAAAGCCTCGAGCAGTAGCGACGCTACTTCAAAAACG
51346484 CCGCTAAAGTCCCAAGC
66 CCGCTAAAGTCCCAAGC
* **
51346501 ATTAGTGGCACTTTTTCAAAAACACCGCTAAAGCC-CTGAGCAGTAGC-AGCGCTTTTTCAAAAA
1 ATTAGCGGCACTTTTTCAAAAACACCGCTAAAGCCTC-GAGCAGTAGCGA-CGCTACTTCAAAAA
51346564 CGCCGCTAAA
64 CGCCGCTAAA
51346574 AATGCCGCTA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
80 2 0.03
81 46 0.74
82 14 0.23
ACGTcount: A:0.31, C:0.27, G:0.19, T:0.22
Consensus pattern (82 bp):
ATTAGCGGCACTTTTTCAAAAACACCGCTAAAGCCTCGAGCAGTAGCGACGCTACTTCAAAAACG
CCGCTAAAGTCCCAAGC
Found at i:51356833 original size:25 final size:24
Alignment explanation
Indices: 51356787--51356833 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
51356777 AGTTACAATT
*
51356787 ATTATTATTGTATTATATATCACC
1 ATTATTATTGTATTATAGATCACC
* *
51356811 ATTATTTTTAGTATTATCGATCA
1 ATTATTATT-GTATTATAGATCA
51356834 TTGTTATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.51
Consensus pattern (24 bp):
ATTATTATTGTATTATAGATCACC
Found at i:51369936 original size:50 final size:50
Alignment explanation
Indices: 51369859--51369999 Score: 185
Period size: 50 Copynumber: 2.8 Consensus size: 50
51369849 TTGACGCTAA
* * * **
51369859 TAGATTGAAGCCACAACGGCGAGTCTTACTTCTCTGGCATTGTAGTGGAG
1 TAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCATTGTAGCAGAG
*
51369909 TAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCGTTGTAGCAGAG
1 TAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCATTGTAGCAGAG
* * *
51369959 CAGATTGAAGCCACGACGGTGAATCTTA-TCTCCCTAGCATT
1 TAGATTGAAGCCACAACGGCGAATCTTACT-TCCCTAGCATT
51370000 AAGGCTTGGA
Statistics
Matches: 80, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
49 1 0.01
50 79 0.99
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (50 bp):
TAGATTGAAGCCACAACGGCGAATCTTACTTCCCTAGCATTGTAGCAGAG
Found at i:51370123 original size:50 final size:49
Alignment explanation
Indices: 51370069--51370235 Score: 158
Period size: 50 Copynumber: 3.4 Consensus size: 49
51370059 TTGGTATTAC
*
51370069 AGTGGAATAGATTGAAGCCACAACAGTGAATCTTACTTCTCTGGCGGTGT
1 AGTGGAATAGATTGAAGCCACAAC-GTGAATCTTACTTCCCTGGCGGTGT
* * * * **** **
51370119 AGTGGAACAGATTGAAGTCACGACGGTGAATCTGT--TTCCCCGATATTAC
1 AGTGGAATAGATTGAAGCCACAAC-GTGAATCT-TACTTCCCTGGCGGTGT
** *
51370168 AGTGGAATAGATTGAAGCCACAACGACAAATCTTACTTCCCTAGCGGTGT
1 AGTGGAATAGATTGAAGCCACAACG-TGAATCTTACTTCCCTGGCGGTGT
51370218 AGTGGAATAGATTGAAGC
1 AGTGGAATAGATTGAAGC
51370236 TACGATAGTG
Statistics
Matches: 88, Mismatches: 25, Indels: 8
0.73 0.21 0.07
Matches are distributed among these distances:
48 2 0.02
49 32 0.36
50 53 0.60
51 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.26
Consensus pattern (49 bp):
AGTGGAATAGATTGAAGCCACAACGTGAATCTTACTTCCCTGGCGGTGT
Found at i:51370373 original size:99 final size:100
Alignment explanation
Indices: 51370077--51370383 Score: 345
Period size: 99 Copynumber: 3.1 Consensus size: 100
51370067 ACAGTGGAAT
* * *
51370077 AGATTGAAGCCACAACAGTGAATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAGTCACGA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAGTCACGA
* * * ** *
51370142 CGGTGAATC-TGTTTCCCCGATATTACAGTGGAAT
66 CAGTGAATCTTGTTTCCCCGACATTGCAGTTAAAA
*** *
51370176 AGATTGAAGCCACAACGACAAATCTTACTTCCCTAGCGGTGTAGTGGAATAGATTGAAG-CTACG
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAGTC-ACG
* *
51370240 ATAGTGAAT-TTGGTTTCCCCGACATTGCAATTAAAA
65 ACAGTGAATCTT-GTTTCCCCGACATTGCAGTTAAAA
* * * * * * *
51370276 AGATTGAAGCCACAATGGTGAATCTTACCTCCCTGGTGATGCA-TGGAATAGATTAAAGTCACAA
1 AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAGTCACGA
*
51370340 CAGCGAATCTTGTTTCCCCGACATTGCAGTTAAACA
66 CAGTGAATCTTGTTTCCCCGACATTGCAGTTAAA-A
51370376 A-ATTGAAG
1 AGATTGAAG
51370384 AAAACAATCC
Statistics
Matches: 173, Mismatches: 29, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
98 1 0.01
99 115 0.66
100 57 0.33
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (100 bp):
AGATTGAAGCCACAACGGTGAATCTTACTTCCCTGGCGGTGTAGTGGAATAGATTGAAGTCACGA
CAGTGAATCTTGTTTCCCCGACATTGCAGTTAAAA
Found at i:51370448 original size:42 final size:42
Alignment explanation
Indices: 51370394--51370696 Score: 203
Period size: 44 Copynumber: 7.1 Consensus size: 42
51370384 AAAACAATCC
*
51370394 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAATCAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCT
** * *** ***
51370436 TATCTCTTTGAAGTTGTAGAATAGCAGA-TCGCATCCAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAT-CAGATCT
* *
51370477 TATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGAAAAT-A-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT----AAAATCAGATCT
* *
51370521 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACATCAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCT
* ** ** *
51370563 TATCTCTCTGAAGTTGCAGAAGAGCAGA-CCACATACAG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAAT-CAGATCT
*
51370604 TATCTCCCTGAAGTTGCAGTGGAATAGACAGA--AGAAATCA-ATCC
1 TATCTCCCTGAAGTTGCAGTGG---AG-CAGATTA-AAATCAGATCT
* **
51370648 TATCTCCCTGAAGTTTCAGTGGAGTGGATTAAAAAAT-AGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT--AAAATCAGATCT
51370691 TATCTC
1 TATCTC
51370697 TATAAATTAT
Statistics
Matches: 199, Mismatches: 41, Indels: 41
0.71 0.15 0.15
Matches are distributed among these distances:
40 6 0.03
41 56 0.28
42 56 0.28
43 13 0.07
44 59 0.30
45 7 0.04
46 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (42 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATCAGATCT
Found at i:51370503 original size:41 final size:42
Alignment explanation
Indices: 51370394--51370626 Score: 195
Period size: 41 Copynumber: 5.5 Consensus size: 42
51370384 AAAACAATCC
* *
51370394 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAAT-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATACAG-TCT
** * *** ** *
51370436 TATCTCTTTGAAGTTGTAGAATAGCAGA-TCGCATCCAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATACAGTCT
* * * * * *
51370477 TATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGAAAATAATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATT-AA-CATACAGTCT
*
51370521 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAACAT-CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATACAG-TCT
* ** **
51370563 TATCTCTCTGAAGTTGCAGAAGAGCAGA-CCACATACAGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATACAGTCT
51370604 TATCTCCCTGAAGTTGCAGTGGA
1 TATCTCCCTGAAGTTGCAGTGGA
51370627 ATAGACAGAA
Statistics
Matches: 144, Mismatches: 41, Indels: 13
0.73 0.21 0.07
Matches are distributed among these distances:
41 55 0.38
42 55 0.38
43 2 0.01
44 32 0.22
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (42 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTAACATACAGTCT
Found at i:51370589 original size:127 final size:127
Alignment explanation
Indices: 51370363--51370697 Score: 467
Period size: 127 Copynumber: 2.6 Consensus size: 127
51370353 TTCCCCGACA
** * *
51370363 TTGCAGTTAAACAAATTGAAGAAAACAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
1 TTGCAGTGGAACAGATTGAAGAAAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
* * * * * *
51370428 TCAGATCTTATCTCTTTGAAGTTGTAGAATAGCAGATCGCATCCAGTCTTATCTCCCTAAAG
66 TCAGATCTTATCTCTCTGAAGTTGCAGAAGAGCAGACCACATACAGTCTTATCTCCCTAAAG
* *
51370490 TTGCAGTGGAGCAGATTGAAGAAAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAACA
1 TTGCAGTGGAACAGATTGAAGAAAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
*
51370555 TCAGATCTTATCTCTCTGAAGTTGCAGAAGAGCAGACCACATACAGTCTTATCTCCCTGAAG
66 TCAGATCTTATCTCTCTGAAGTTGCAGAAGAGCAGACCACATACAGTCTTATCTCCCTAAAG
* ** * *
51370617 TTGCAGTGGAATAGACAGAAG-AAATCAATCCTATCTCCCTGAAGTTTCAGTGGAGTGGATTAAA
1 TTGCAGTGGAACAGATTGAAGAAAAT-AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT--A
51370681 AAAT-AGATCTTATCTCT
63 AAATCAGATCTTATCTCT
51370698 ATAAATTATA
Statistics
Matches: 185, Mismatches: 20, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
126 4 0.02
127 164 0.89
128 13 0.07
129 4 0.02
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (127 bp):
TTGCAGTGGAACAGATTGAAGAAAATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
TCAGATCTTATCTCTCTGAAGTTGCAGAAGAGCAGACCACATACAGTCTTATCTCCCTAAAG
Found at i:51372241 original size:25 final size:24
Alignment explanation
Indices: 51372195--51372241 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
51372185 AGTTACAATT
*
51372195 ATTATTATTGTATTATATATCACC
1 ATTATTATTGTATTATAGATCACC
* *
51372219 ATTATTTTTAGTATTATCGATCA
1 ATTATTATT-GTATTATAGATCA
51372242 TTGTTATGTT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 8 0.42
25 11 0.58
ACGTcount: A:0.32, C:0.11, G:0.06, T:0.51
Consensus pattern (24 bp):
ATTATTATTGTATTATAGATCACC
Found at i:51378100 original size:17 final size:18
Alignment explanation
Indices: 51378078--51378112 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
51378068 GGTTCATGGC
*
51378078 AACGATA-CATCAAGTTT
1 AACGATACCATAAAGTTT
51378095 AACGATACCATAAAGTTT
1 AACGATACCATAAAGTTT
51378113 TTTGGCTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.43, C:0.17, G:0.11, T:0.29
Consensus pattern (18 bp):
AACGATACCATAAAGTTT
Found at i:51380026 original size:21 final size:20
Alignment explanation
Indices: 51379974--51380016 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
51379964 ACGGGTTAGT
51379974 TTGACTATAATAGTTAATAAA
1 TTGA-TATAATAGTTAATAAA
*
51379995 TTGATCATAATAGTTCATAAA
1 TTGAT-ATAATAGTTAATAAA
51380016 T
1 T
51380017 AATATATAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 1 0.05
21 19 0.95
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (20 bp):
TTGATATAATAGTTAATAAA
Found at i:51385785 original size:3 final size:3
Alignment explanation
Indices: 51385777--51385802 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
51385767 AGTGGCCGGT
51385777 TCA TCA TCA TCA TCA TCA TCA TCA TC
1 TCA TCA TCA TCA TCA TCA TCA TCA TC
51385803 TCCTTCTGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.00, T:0.35
Consensus pattern (3 bp):
TCA
Found at i:51389058 original size:36 final size:37
Alignment explanation
Indices: 51389018--51389090 Score: 103
Period size: 39 Copynumber: 1.9 Consensus size: 37
51389008 ACTTTACTGC
* *
51389018 TTTCGATTAGAA-TGAGGGAAAATTCTGGCTTACTAT
1 TTTCGATTAGAATTCAGGGAAAATTCTGGATTACTAT
51389054 TTTCGATTAGAATTTTCAGGGAAAATTCTGGATTACT
1 TTTCGATTAGAA--TTCAGGGAAAATTCTGGATTACT
51389091 GCTTTGCTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
36 12 0.38
39 20 0.62
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (37 bp):
TTTCGATTAGAATTCAGGGAAAATTCTGGATTACTAT
Found at i:51399343 original size:21 final size:20
Alignment explanation
Indices: 51399312--51399353 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
51399302 TATCATTAGA
51399312 AATTTTAAAAAATAAAAAAT
1 AATTTTAAAAAATAAAAAAT
* *
51399332 AATTTATAAAAATTGAAAAAT
1 AATTT-TAAAAAATAAAAAAT
51399353 A
1 A
51399354 CTAAAAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (20 bp):
AATTTTAAAAAATAAAAAAT
Found at i:51402282 original size:18 final size:18
Alignment explanation
Indices: 51402259--51402303 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
51402249 ATGTGAGAAT
*
51402259 TGATATTCACATTTTAAA
1 TGATATTCACATTTCAAA
51402277 TGATATTCACATTTCAAA
1 TGATATTCACATTTCAAA
*
51402295 TGATGTTCA
1 TGATATTCA
51402304 AATTGATGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (18 bp):
TGATATTCACATTTCAAA
Found at i:51402823 original size:72 final size:72
Alignment explanation
Indices: 51402732--51402868 Score: 229
Period size: 72 Copynumber: 1.9 Consensus size: 72
51402722 CAATGCTAAA
* * *
51402732 CTAGTTTTATCAATAGTTATTTACGTTTGGTTTTTGGATATTGAATTTATGTTCTATTTATTTAT
1 CTAGTTTTATCAATAGTTATTTACGTTTGGTATTTGGATATTAAATTTATGTTCTATTGATTTAT
51402797 GTGTAAT
66 GTGTAAT
* *
51402804 CTAGTTTTATTAATAGTTATTTATGTTTGGTATTTGGATATTAAATTTATGTTCTATTGATTTAT
1 CTAGTTTTATCAATAGTTATTTACGTTTGGTATTTGGATATTAAATTTATGTTCTATTGATTTAT
51402869 ACTAAATTAA
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
72 60 1.00
ACGTcount: A:0.25, C:0.04, G:0.15, T:0.56
Consensus pattern (72 bp):
CTAGTTTTATCAATAGTTATTTACGTTTGGTATTTGGATATTAAATTTATGTTCTATTGATTTAT
GTGTAAT
Found at i:51402921 original size:71 final size:72
Alignment explanation
Indices: 51402736--51402922 Score: 191
Period size: 72 Copynumber: 2.6 Consensus size: 72
51402726 GCTAAACTAG
** * * * * * * *
51402736 TTTTATCAATAGTTATTTACGTTTGGTTTTTGGATATTGAATTTATGTTCTATTTATTTATGTGT
1 TTTTATCAATAGTTATTTATATATGATATTTGGATATTAAATTTATGTTCTATTGATTTATCTGA
*
51402801 AATCTAG
66 AATCTAA
* * * *
51402808 TTTTATTAATAGTTATTTATGTTTGGTATTTGGATATTAAATTTATGTTCTATTGATTTATACT-
1 TTTTATCAATAGTTATTTATATATGATATTTGGATATTAAATTTATGTTCTATTGATTTAT-CTG
51402872 AAAT-TAA
65 AAATCTAA
* *
51402879 TTTTATCAATAGTTGTTTATATATGAT-TTTGGATGTTCAAATTT
1 TTTTATCAATAGTTATTTATATATGATATTTGGATATT-AAATTT
51402923 TTTCATAGGT
Statistics
Matches: 99, Mismatches: 14, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
70 9 0.09
71 30 0.30
72 59 0.60
73 1 0.01
ACGTcount: A:0.27, C:0.04, G:0.13, T:0.55
Consensus pattern (72 bp):
TTTTATCAATAGTTATTTATATATGATATTTGGATATTAAATTTATGTTCTATTGATTTATCTGA
AATCTAA
Found at i:51408234 original size:40 final size:40
Alignment explanation
Indices: 51408179--51408256 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
51408169 GATGTCAAGG
* *
51408179 GACGTGTCAGCAAATCGCATCCACATCAGCGCGATTTGCT
1 GACGTGGCAGCAAATCGCATCCACATAAGCGCGATTTGCT
* *
51408219 GACGTGGCAGCAAATCGCGTCCACGTAAGCGCGATTTG
1 GACGTGGCAGCAAATCGCATCCACATAAGCGCGATTTG
51408257 TGGTCATGTC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (40 bp):
GACGTGGCAGCAAATCGCATCCACATAAGCGCGATTTGCT
Found at i:51408270 original size:40 final size:40
Alignment explanation
Indices: 51408183--51408277 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 40
51408173 TCAAGGGACG
* * *
51408183 TGTCAGCAAATCGCATCCACATCAGCGCGATTTGCTGACG
1 TGTCAGCAAATCGCGTCCACATAAGCGCGATTTGCTGACA
* * *
51408223 TGGCAGCAAATCGCGTCCACGTAAGCGCGATTTG-TGGTCA
1 TGTCAGCAAATCGCGTCCACATAAGCGCGATTTGCT-GACA
*
51408263 TGTCAGCAAAGCGCG
1 TGTCAGCAAATCGCG
51408278 CTGACGTAGA
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 1 0.02
40 45 0.98
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.21
Consensus pattern (40 bp):
TGTCAGCAAATCGCGTCCACATAAGCGCGATTTGCTGACA
Found at i:51408912 original size:124 final size:124
Alignment explanation
Indices: 51408489--51409054 Score: 706
Period size: 124 Copynumber: 4.5 Consensus size: 124
51408479 GATAAAATCA
* * * * * * * *
51408489 AAGCAGGATGATTTATCA-AAGGATTTTTGAAGTCACTCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * * *
51408553 AGATCCTGGAAAAATAATTTTGAGTTAACGTTTCTAAGCAAATAGTTTAAAAAAAGCTTC
66 AGGTCCTGAAAAAATAATTTCGAGTTAACGTTTCTGAGCAAATAGTAT-AAAAACGCTTC
* *
51408613 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACACG-TTTTGGCTACAG
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTT-GCTACAG
* * * * *
51408677 TTGGTCTTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTTTAAAAAAACGCTTC
65 TAGGTCCT-GAAAAAATAATTTCGAGTTAACGTTTCTGAGCAAATAG--TATAAAAACGCTTC
51408740 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* *
51408805 AGGTCCTGAAAAAATAATTTCGAGTTAACGTTTTTGAGCAAATAGTATAAAAACGCTGC
66 AGGTCCTGAAAAAATAATTTCGAGTTAACGTTTCTGAGCAAATAGTATAAAAACGCTTC
* * *
51408864 AAGTAGGATGCTATT-TGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCACTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* * * * * * *
51408928 TAAGTTCTGGAAAAATAATTTCGACTTGACATTTCTGAGCAAATAGTATAAAATCGCTTC
65 TAGGTCCTGAAAAAATAATTTCGAGTTAACGTTTCTGAGCAAATAGTATAAAAACGCTTC
* * * * **
51408988 TAGTAGGATTCTTTATGAGAAGAATTTGTGAAATCGCGCCCACATGGACGCATTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
51409053 AG
66 AG
51409055 CATGTTTGGG
Statistics
Matches: 386, Mismatches: 48, Indels: 16
0.86 0.11 0.04
Matches are distributed among these distances:
123 2 0.01
124 199 0.52
125 39 0.10
126 68 0.18
127 73 0.19
128 5 0.01
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.30
Consensus pattern (124 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCGAGTTAACGTTTCTGAGCAAATAGTATAAAAACGCTTC
Found at i:51412304 original size:27 final size:27
Alignment explanation
Indices: 51412274--51412451 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
51412264 ATATTGAGTC
* * * *
51412274 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
51412301 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51412328 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
51412356 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
51412383 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
51412410 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
51412437 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
51412452 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:51412413 original size:82 final size:81
Alignment explanation
Indices: 51412295--51412450 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
51412285 TGCTATATAA
* *
51412295 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
51412360 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
51412377 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
51412441 CACTTAGTGC
65 CACTTAGTGC
51412451 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:51566692 original size:40 final size:40
Alignment explanation
Indices: 51566646--51566870 Score: 290
Period size: 40 Copynumber: 5.6 Consensus size: 40
51566636 CTTGCGCAAG
* * *
51566646 GCCTTCGGGTCTTAGCCCGGATGTGGTCACTAGCATAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
51566686 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* * *
51566726 GCCTTCGGGTTTTAGCCCGGATATAATCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
* *
51566766 GCCTTCGGGTCTTAGCCCGGATATAG-CAACTCGCACGAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCACAAAT
* * * *
51566806 GCCTTCGGATCTTAGTCCGGTTATAGTCACCTAGCACAAAA
1 GCCTTCGGGTCTTAGCCCGGATATAGTCA-CTAGCACAAAT
*
51566847 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
51566871 CATTCGAATA
Statistics
Matches: 159, Mismatches: 23, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
39 1 0.01
40 129 0.81
41 29 0.18
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAAT
Found at i:51566741 original size:80 final size:80
Alignment explanation
Indices: 51566610--51566870 Score: 303
Period size: 80 Copynumber: 3.3 Consensus size: 80
51566600 CTCAAGTAAT
* * * * * * * *
51566610 CTTCGGGATTTAG-CCGGATATAACTACTTGCGC-AAGGCCTTCGGGTCTTAGCCCGGATGTGGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
51566673 CACTAGCATAAATGC
66 CACTAGCACAAATGC
* * *
51566688 CTTCGGGACTTAGCCCGGATATAGTC-GCTAGCACAAATGCCTTCGGGTTTTAGCCCGGATATAA
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAG
*
51566752 TCGCTAGCACAAATGC
65 TCACTAGCACAAATGC
* * * * * *
51566768 CTTCGGGTCTTAGCCCGGATATAGCAACTCGCACGAATGCCTTCGGATCTTAGTCCGGTTATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
*
51566833 CACCTAGCACAAAAGC
66 CA-CTAGCACAAATGC
51566849 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
51566871 CATTCGAATA
Statistics
Matches: 154, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
78 12 0.08
79 15 0.10
80 94 0.61
81 33 0.21
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:51569500 original size:28 final size:27
Alignment explanation
Indices: 51569468--51569521 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 27
51569458 CTTTCTTGGT
51569468 AGCATTTAATTTCTACTA-CTCTTTACTA
1 AGCATTTAA-TTC-ACTACCTCTTTACTA
51569496 AGCATTTAATTCACTACCTCTTTACT
1 AGCATTTAATTCACTACCTCTTTACT
51569522 TCTGGTTAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
26 4 0.16
27 12 0.48
28 9 0.36
ACGTcount: A:0.28, C:0.24, G:0.04, T:0.44
Consensus pattern (27 bp):
AGCATTTAATTCACTACCTCTTTACTA
Found at i:51569926 original size:160 final size:156
Alignment explanation
Indices: 51569746--51570498 Score: 667
Period size: 160 Copynumber: 4.8 Consensus size: 156
51569736 TTTATGAGTG
*
51569746 TATATAAATGCTTGTTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTATAGCCTCT
1 TATATAAATGCTTATTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTA-A-CCTCT
* *
51569811 ATTTTATTATAAATGCGTACTTTATTT-T-TTTTATAAGTAGAACGATTTTCGAATTATATAT-T
64 ATTTTATTATAAATGCTTACTTTGTTTGTATTTTATAAGTA-AACGATTTTCGAATTATATATCT
51569873 GTTTAACGATACTTAAATTTATATTTCATT
128 -TTTAACGATACTTAAATTTATATTTCATT
* *
51569903 ATATATTATAATGCTTATTTTGCTTTGGTTATCGGAATCATACACCTTTCACCATATCTATACCT
1 -TATA-TA-AATGCTTATTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTA-ACCT
* * * *
51569968 CTATTTTGTTTATAAATGCGTAATTTGTTTGT-TTTTAAAAGTAAAACGATTTTCG-ATTATATA
62 CTATTTT-ATTATAAATGCTTACTTTGTTTGTATTTTATAAGT-AAACGATTTTCGAATTATATA
* **
51570031 TCTTTT-ACGATA--T--ATTT-CA-TGGATT
125 TCTTTTAACGATACTTAAATTTATATTTCATT
* *
51570056 TATATAAATGCTTATTTTTCTTTGGTTATC-GAATCATACACC-TTCACTATACCTAAACCTCTA
1 TATATAAATGCTTATTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCT-AACCTCTA
* * * * * * *
51570119 TTTTA-T-T--ATGCTTATTTTGTTTGTGTTTCAATAAGTAAA-TAGGTTTCAAATTAGATATCT
65 TTTTATTATAAATGCTTACTTTGTTTGTATTT-TATAAGTAAACGA-TTTTCGAATTATATATCT
*
51570179 TTTAACGATACTTAAAGTTATATTTTACGAGTGT
128 TTTAACGATACTTAAATTTATA-TTT-C-A-T-T
* * * * * *
51570213 TATATAAATACTTATTTGGCTTTGGTTAT-AGGAATCATACA-CTTCCGCAATACCTAAACCTTT
1 TATATAAATGCTTATTTTGCTTTGGTTATCA-GAATCATACACCTTTCACCATACCT-AACCTCT
* *
51570276 ATTTTATTATAAATGCTTA-TTTGTTTCTATTTTAATAAGTAAGACGGTTTTTTCGAATTATATA
64 ATTTTATTATAAATGCTTACTTTGTTTGTATTTT-ATAAGTAA-AC-G-ATTTTCGAATTATATA
51570340 TCTTTTAACGATACTAATTAAAGTTTATATTTCATTGT
125 TCTTTTAACGATAC---TTAAA-TTTATATTTCA-T-T
* * * * * * * *
51570378 GTACATAAATG-TAATTTTTCTTTCGTTATCGGAATCATCCACCTTTC-CTATACGTAACCTCTA
1 -TATATAAATGCTTATTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTAACCTCTA
* *
51570441 TTTTATTAT-AATGCTTACTTTGTTTTTATTTTAATAAGTATAATGATTTT-GAATTATA
65 TTTTATTATAAATGCTTACTTTGTTTGTATTTT-ATAAGTA-AACGATTTTCGAATTATA
51570499 ATGAATATAT
Statistics
Matches: 493, Mismatches: 58, Indels: 85
0.78 0.09 0.13
Matches are distributed among these distances:
143 16 0.03
144 10 0.02
145 19 0.04
146 7 0.01
148 22 0.04
149 13 0.03
150 26 0.05
151 3 0.01
152 4 0.01
153 5 0.01
154 1 0.00
155 5 0.01
156 1 0.00
157 29 0.06
158 36 0.07
159 19 0.04
160 82 0.17
161 49 0.10
162 13 0.03
163 9 0.02
164 64 0.13
165 34 0.07
166 13 0.03
167 8 0.02
168 5 0.01
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (156 bp):
TATATAAATGCTTATTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTAACCTCTAT
TTTATTATAAATGCTTACTTTGTTTGTATTTTATAAGTAAACGATTTTCGAATTATATATCTTTT
AACGATACTTAAATTTATATTTCATT
Found at i:51570239 original size:307 final size:312
Alignment explanation
Indices: 51569746--51570352 Score: 719
Period size: 305 Copynumber: 2.0 Consensus size: 312
51569736 TTTATGAGTG
* *
51569746 TATATAAATGCTTGTTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTATAGCCTCT
1 TATATAAATGCTTATTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTATAACCTCT
* * * * *
51569811 ATTTTATTATAAATGCGTACTTTATTTTTTTTATAAGTAGAACGATTTTCGAATTATATATTGTT
66 ATTTTATTAT-AATGCGTACTTTATTTTTTTAATAAGTAGAAAGAGTTTCAAATTAGATATTGTT
* * * *
51569876 TAACGATACTTAAATTTATATTTCATTATATATTATAATGCTTATTTTGCTTTGGTTATCGGAAT
130 TAACGATACTTAAAGTTATATTTCATTATATATTATAATACTTATTTGGCTTTGGTTATAGGAAT
* * * * * *
51569941 CATACACCTTTCACCATATCTATACCTCTATTTTGTTTATAAATGCGTAATTTGTTTGT-TTTTA
195 CATACA-CTTCCACAATACCTAAACCTCTATTTT-ATTATAAATGC-TAATTTGTTTCTATTTTA
51570005 A-AAGTAAAAC-G-ATTTTCG-ATTATATATCTTTT-ACGATATATTTCATGGATT
257 ATAAGTAAAACGGTATTTTCGAATTATATATCTTTTAACGATATATTTCATGGATT
* *
51570056 TATATAAATGCTTATTTTTCTTTGGTTATC-GAATCATACACC-TTCACTATACCTA-AACCTCT
1 TATATAAATGCTTATTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTATAACCTCT
* * *
51570118 ATTTTA-T-T-ATGCTTATTTTGTTTGTGTTTCAATAAGTA-AATAG-GTTTCAAATTAGATATC
66 ATTTTATTATAATGCGTACTTTATTT-T-TTT-AATAAGTAGAA-AGAGTTTCAAATTAGATAT-
51570178 T-TTTAACGATACTTAAAGTTATATTTTACGAGTGT-TATA-TA-AATACTTATTTGGCTTTGGT
126 TGTTTAACGATACTTAAAGTTATA-TTT-C-A-T-TATATATTATAATACTTATTTGGCTTTGGT
* * *
51570239 TATAGGAATCATACACTTCCGCAATACCTAAACCTTTATTTTATTATAAATGCTTATTTGTTTCT
186 TATAGGAATCATACACTTCCACAATACCTAAACCTCTATTTTATTATAAATGCTAATTTGTTTCT
* *
51570304 ATTTTAATAAGTAAGACGGTTTTTTCGAATTATATATCTTTTAACGATA
251 ATTTTAATAAGTAAAACGGTATTTTCGAATTATATATCTTTTAACGATA
51570353 CTAATTAAAG
Statistics
Matches: 254, Mismatches: 27, Indels: 32
0.81 0.09 0.10
Matches are distributed among these distances:
303 12 0.05
304 11 0.04
305 56 0.22
306 42 0.17
307 46 0.18
308 21 0.08
309 31 0.12
310 35 0.14
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.46
Consensus pattern (312 bp):
TATATAAATGCTTATTTTGCTTTGGTTATCAGAATCATACACCTTTCACCATACCTATAACCTCT
ATTTTATTATAATGCGTACTTTATTTTTTTAATAAGTAGAAAGAGTTTCAAATTAGATATTGTTT
AACGATACTTAAAGTTATATTTCATTATATATTATAATACTTATTTGGCTTTGGTTATAGGAATC
ATACACTTCCACAATACCTAAACCTCTATTTTATTATAAATGCTAATTTGTTTCTATTTTAATAA
GTAAAACGGTATTTTCGAATTATATATCTTTTAACGATATATTTCATGGATT
Found at i:51570445 original size:164 final size:158
Alignment explanation
Indices: 51570041--51570480 Score: 450
Period size: 164 Copynumber: 2.7 Consensus size: 158
51570031 TCTTTTACGA
*
51570041 TATATTTCATGGATTTATATAAATGCTTATTTTTCTTTGGTTATC-GAATCATACACC-TTCACT
1 TATATTTCATTG--TTATATAAATG-TTATTTTTCTTTGGTTATCGGAATCATACACCTTTCACT
* * * *
51570104 ATACCTAAACCTCTATTTTA-T-T-ATGCTTATTTTGTTTGTGTTTCAATAAGTAAATAGGTTTC
63 ATACCTAAACCTCTATTTTATTATAATGCTTACTTTGTTTCTATTTTAATAAGTAAATAGGTTTC
51570166 AAATTAGATATCTTTTAACGATACTTAAAGT
128 AAATTAGATATCTTTTAACGATACTTAAAGT
* * ** * * *
51570197 TATATTTTACGAGTGTTATATAAATACTTATTTGGCTTTGGTTATAGGAATCATACA-CTTCCGC
1 TATA-TTT-C-ATTGTTATATAAAT-GTTATTTTTCTTTGGTTATCGGAATCATACACCTTTCAC
* * *
51570261 AATACCTAAACCTTTATTTTATTATAAATGCTTA-TTTGTTTCTATTTTAATAAGTAAGA-CGGT
62 TATACCTAAACCTCTATTTTATTAT-AATGCTTACTTTGTTTCTATTTTAATAAGTAA-ATAGG-
* *
51570324 TTTTTCGAATTATATATCTTTTAACGATACTAATTAAAGTT
124 --TTTCAAATTAGATATCTTTTAACGATAC---TTAAAG-T
* * * *
51570365 TATATTTCATTGTGTACATAAATGTAATTTTTCTTTCGTTATCGGAATCATCCACCTTTC-CTAT
1 TATATTTCATTGT-TATATAAATGTTATTTTTCTTTGGTTATCGGAATCATACACCTTTCACTAT
* *
51570429 ACGT-AACCTCTATTTTATTATAATGCTTACTTTGTTTTTATTTTAATAAGTA
65 ACCTAAACCTCTATTTTATTATAATGCTTACTTTGTTTCTATTTTAATAAGTA
51570481 TAATGATTTT
Statistics
Matches: 233, Mismatches: 30, Indels: 34
0.78 0.10 0.11
Matches are distributed among these distances:
156 4 0.02
157 30 0.13
158 33 0.14
159 3 0.01
160 1 0.00
161 22 0.09
162 8 0.03
163 8 0.03
164 63 0.27
165 34 0.15
166 13 0.06
167 9 0.04
168 5 0.02
ACGTcount: A:0.30, C:0.13, G:0.10, T:0.47
Consensus pattern (158 bp):
TATATTTCATTGTTATATAAATGTTATTTTTCTTTGGTTATCGGAATCATACACCTTTCACTATA
CCTAAACCTCTATTTTATTATAATGCTTACTTTGTTTCTATTTTAATAAGTAAATAGGTTTCAAA
TTAGATATCTTTTAACGATACTTAAAGT
Found at i:51570838 original size:161 final size:163
Alignment explanation
Indices: 51570576--51571148 Score: 661
Period size: 161 Copynumber: 3.6 Consensus size: 163
51570566 TTCTTTTACA
* * **
51570576 ATACCTAAACTTGTATTTTATTATAAATG-ATATTTGTTCCTGTTTTAATAAGCAAAATGG-TTT
1 ATACCTAAACTTATATTTTATTATAAATGCTTATTTGTTTTTGTTTTAATAAGCAAAATGGTTTT
* *
51570639 CAAATTATATATCTTTTAACGATACCTAAAGTTTATATTCCATTGTGTTCTAT-AATACTTATTT
66 CAAATTATATATCTTTTAACGATACTTAAAGTTTATATTCCATCGTGTTCTATAAATACTTATTT
*
51570703 TGCTTTCGTTATCGGAATCGTACACTTTTTTCT
131 TGCTTTCGTTATCGGAATCATACACTTTTTTCT
*
51570736 ATACCTAAACTTATA-TTT-TTATAAATGCTTATTTTGTTTTTGTTTTAATAAGTAAAATGGTTT
1 ATACCTAAACTTATATTTTATTATAAATGCTTA-TTTGTTTTTGTTTTAATAAGCAAAATGGTTT
* * *
51570799 TCAATTTATATATCTTTTAACGATACTTAAAGTTTATATTCCATCGTGTTTTATAAATTCTTATT
65 TCAAATTATATATCTTTTAACGATACTTAAAGTTTATATTCCATCGTGTTCTATAAATACTTATT
* *
51570864 TCGCTTTCGTTATCGGAATCATACATCTTTTAT-T
130 TTGCTTTCGTTATCGGAATCATACA-CTTTTTTCT
* * * * * *
51570898 ATACTTAAACTTGTATTTTATTATAAATGCTTATTT-TGTTTT-TATTATTAAGTAAGATGGTTT
1 ATACCTAAACTTATATTTTATTATAAATGCTTATTTGT-TTTTGTTTTAATAAGCAAAATGGTTT
* * *
51570961 TCAAATTATATATCTTTTAACGATGAC-TAAA-TCTATACTCCATCGTG-TCTTATAAATGCTTA
65 TCAAATTATATATCTTTTAACGAT-ACTTAAAGTTTATATTCCATCGTGTTC-TATAAATACTTA
* * * * *
51571023 TTTT-CTTTGGTTATTGAAATCATACACCTTTTACT
128 TTTTGCTTTCGTTATCGGAATCATACACTTTTTTCT
*** * * * * *
51571058 ATACCTAAACCCGTATTTTATTAT-AATACTTATTTGTATTTATTTTAATATGCAAATTGGTTTT
1 ATACCTAAACTTATATTTTATTATAAATGCTTATTTGTTTTTGTTTTAATAAGCAAAATGG-TTT
* *
51571122 TCAAATTATGTATCTTTT-ACAATACTT
65 TCAAATTATATATCTTTTAACGATACTT
51571149 GTAATTTATG
Statistics
Matches: 355, Mismatches: 43, Indels: 30
0.83 0.10 0.07
Matches are distributed among these distances:
158 9 0.03
159 24 0.07
160 99 0.28
161 100 0.28
162 92 0.26
163 18 0.05
164 13 0.04
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.49
Consensus pattern (163 bp):
ATACCTAAACTTATATTTTATTATAAATGCTTATTTGTTTTTGTTTTAATAAGCAAAATGGTTTT
CAAATTATATATCTTTTAACGATACTTAAAGTTTATATTCCATCGTGTTCTATAAATACTTATTT
TGCTTTCGTTATCGGAATCATACACTTTTTTCT
Found at i:51570924 original size:322 final size:321
Alignment explanation
Indices: 51570567--51571148 Score: 743
Period size: 322 Copynumber: 1.8 Consensus size: 321
51570557 CTTATTTACT
51570567 TCTTTTACAATACCTAAACTTGTATTTTATTATAAATG-ATA-TTTGTTCCTGTT-TTAATAAGC
1 TCTTTTACAATACCTAAACTTGTATTTTATTATAAATGCATATTTTGTT--T-TTATTAATAAGC
* * *
51570629 AAAATGG-TTTCAAATTATATATCTTTTAACGAT-ACCTAAAGTTTATATTCCATTGTGT-TCTA
63 AAAATGGTTTTCAAATTATATATCTTTTAACGATGA-CTAAA-TCTATACTCCATCGTGTCT-TA
* * * * *
51570691 T-AATACTTATTTTGCTTTCGTTATCGGAATCGTACACTTTTTTCTATACCTAAA-CTTATATTT
125 TAAATACTTATTTT-CTTTCGTTATCGAAATCATACACCTTTTACTATACCTAAACCGTAT-TTT
* * * * *
51570754 -TTATAAATGCTTATTTTGTTTTTGTTTTAATAAGTAAAATGG-TTTTCAATTTATATATCTTTT
188 ATTAT-AATACTTA-TTTGTATTTATTTTAATAAGCAAAATGGTTTTTCAAATTATATATCTTTT
*
51570817 AACGATACTTAAAGTTTATATTCCATCGTGTTTTATAAATTCTTATTTCGCTTTCGTTATCGGAA
251 -ACAATACTTAAAGTTTATATTCCATCGTGTTTTATAAATTCTTATTTCGCTTTCGTTATCGGAA
51570882 TCATACA
315 TCATACA
** * * * * *
51570889 TCTTTTATTATACTTAAACTTGTATTTTATTATAAATGCTTATTTTGTTTTTATTATTAAGTAAG
1 TCTTTTACAATACCTAAACTTGTATTTTATTATAAATGCATATTTTGTTTTTATTAATAAGCAAA
*
51570954 ATGGTTTTCAAATTATATATCTTTTAACGATGACTAAATCTATACTCCATCGTGTCTTATAAATG
66 ATGGTTTTCAAATTATATATCTTTTAACGATGACTAAATCTATACTCCATCGTGTCTTATAAATA
* *
51571019 CTTATTTTCTTTGGTTATTGAAATCATACACCTTTTACTATACCTAAACCCGTATTTTATTATAA
131 CTTATTTTCTTTCGTTATCGAAATCATACACCTTTTACTATACCTAAA-CCGTATTTTATTATAA
* * *
51571084 TACTTATTTGTATTTATTTTAATATGCAAATTGGTTTTTCAAATTATGTATCTTTTACAATACTT
195 TACTTATTTGTATTTATTTTAATAAGCAAAATGGTTTTTCAAATTATATATCTTTTACAATACTT
51571149 GTAATTTATG
Statistics
Matches: 222, Mismatches: 27, Indels: 22
0.82 0.10 0.08
Matches are distributed among these distances:
321 2 0.01
322 131 0.59
323 74 0.33
324 15 0.07
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.49
Consensus pattern (321 bp):
TCTTTTACAATACCTAAACTTGTATTTTATTATAAATGCATATTTTGTTTTTATTAATAAGCAAA
ATGGTTTTCAAATTATATATCTTTTAACGATGACTAAATCTATACTCCATCGTGTCTTATAAATA
CTTATTTTCTTTCGTTATCGAAATCATACACCTTTTACTATACCTAAACCGTATTTTATTATAAT
ACTTATTTGTATTTATTTTAATAAGCAAAATGGTTTTTCAAATTATATATCTTTTACAATACTTA
AAGTTTATATTCCATCGTGTTTTATAAATTCTTATTTCGCTTTCGTTATCGGAATCATACA
Found at i:51571121 original size:160 final size:161
Alignment explanation
Indices: 51570568--51571140 Score: 650
Period size: 160 Copynumber: 3.6 Consensus size: 161
51570558 TTATTTACTT
* * ** *
51570568 CTTTTACAATACCTAAACTTGTATTTTATTATAAATGA--TA-TTTGTTCCTGTTTTAATAAGCA
1 CTTTTACTATACCTAAACTCGTATTTTATTATAAAT-ACTTATTTTGTTTTTATTTTAATAAGCA
*
51570630 AAATGG-TTTCAAATTATATATCTTTTAACGATACCTAAAGTTTATATTCCATTGTGTTCTAT-A
65 AAATGGTTTTCAAATTATATATCTTTTAACGATA-CTAAAGTTTATATTCCATCGTGTT-TATAA
*
51570693 ATACTTATTTTGCTTTCGTTATCGGAATCGTACAC
128 ATACTTATTTT-CTTTCGTTATCGGAATCATACAC
* * * * *
51570728 TTTTTTCTATACCTAAACT--TATATTT-TTATAAATGCTTATTTTGTTTTTGTTTTAATAAGTA
1 CTTTTACTATACCTAAACTCGTAT-TTTATTATAAATACTTATTTTGTTTTTATTTTAATAAGCA
*
51570790 AAATGGTTTTCAATTTATATATCTTTTAACGATACTTAAAGTTTATATTCCATCGTGTTTTATAA
65 AAATGGTTTTCAAATTATATATCTTTTAACGATAC-TAAAGTTTATATTCCATCGTG-TTTATAA
* * *
51570855 ATTCTTATTTCGCTTTCGTTATCGGAATCATACAT
128 ATACTTATTT-TCTTTCGTTATCGGAATCATACAC
* * * * * *
51570890 CTTTTATTATACTTAAACTTGTATTTTATTATAAATGCTTATTTTGTTTTTA--TTATTAAGTAA
1 CTTTTACTATACCTAAACTCGTATTTTATTATAAATACTTATTTTGTTTTTATTTTAATAAGCAA
* * *
51570953 GATGGTTTTCAAATTATATATCTTTTAACGATGACTAAA-TCTATACTCCATCGTGTCTTATAAA
66 AATGGTTTTCAAATTATATATCTTTTAACGAT-ACTAAAGTTTATATTCCATCGTGT-TTATAAA
* * * *
51571017 TGCTTATTTTCTTTGGTTATTGAAATCATACAC
129 TACTTATTTTCTTTCGTTATCGGAATCATACAC
* * *
51571050 CTTTTACTATACCTAAACCCGTATTTTATTAT-AATACTTA-TTTGTATTTATTTTAATATGCAA
1 CTTTTACTATACCTAAACTCGTATTTTATTATAAATACTTATTTTGTTTTTATTTTAATAAGCAA
* *
51571113 ATTGGTTTTTCAAATTATGTATCTTTTA
66 AATGG-TTTTCAAATTATATATCTTTTA
51571141 CAATACTTGT
Statistics
Matches: 355, Mismatches: 41, Indels: 33
0.83 0.10 0.08
Matches are distributed among these distances:
158 20 0.06
159 12 0.03
160 101 0.28
161 99 0.28
162 92 0.26
163 5 0.01
164 26 0.07
ACGTcount: A:0.30, C:0.13, G:0.09, T:0.49
Consensus pattern (161 bp):
CTTTTACTATACCTAAACTCGTATTTTATTATAAATACTTATTTTGTTTTTATTTTAATAAGCAA
AATGGTTTTCAAATTATATATCTTTTAACGATACTAAAGTTTATATTCCATCGTGTTTATAAATA
CTTATTTTCTTTCGTTATCGGAATCATACAC
Found at i:51575851 original size:17 final size:17
Alignment explanation
Indices: 51575828--51575895 Score: 64
Period size: 17 Copynumber: 4.0 Consensus size: 17
51575818 AGCTCTAGTA
51575828 CTGGCGAACTCCTATGT
1 CTGGCGAACTCCTATGT
* * *
51575845 TTGGCGAACTCTTATGC
1 CTGGCGAACTCCTATGT
* * *
51575862 CCGGCAAACCCCTATGT
1 CTGGCGAACTCCTATGT
**
51575879 CTAACGAACTCCTATGT
1 CTGGCGAACTCCTATGT
51575896 TTGACAAACA
Statistics
Matches: 37, Mismatches: 14, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (17 bp):
CTGGCGAACTCCTATGT
Found at i:51576009 original size:13 final size:13
Alignment explanation
Indices: 51575987--51576039 Score: 61
Period size: 13 Copynumber: 3.9 Consensus size: 13
51575977 GGCAAACTCA
*
51575987 CCTATGGTGAACC
1 CCTATCGTGAACC
51576000 CCTATCGTGAACTC
1 CCTATCGTGAAC-C
* *
51576014 ACCTATGGCGAACC
1 -CCTATCGTGAACC
51576028 CCTATCGTGAAC
1 CCTATCGTGAAC
51576040 TGCCTTAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
13 21 0.64
14 2 0.06
15 10 0.30
ACGTcount: A:0.25, C:0.34, G:0.19, T:0.23
Consensus pattern (13 bp):
CCTATCGTGAACC
Found at i:51576012 original size:28 final size:28
Alignment explanation
Indices: 51575981--51576040 Score: 111
Period size: 28 Copynumber: 2.1 Consensus size: 28
51575971 CCTTATGGCA
*
51575981 AACTCACCTATGGTGAACCCCTATCGTG
1 AACTCACCTATGGCGAACCCCTATCGTG
51576009 AACTCACCTATGGCGAACCCCTATCGTG
1 AACTCACCTATGGCGAACCCCTATCGTG
51576037 AACT
1 AACT
51576041 GCCTTAATTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.27, C:0.33, G:0.17, T:0.23
Consensus pattern (28 bp):
AACTCACCTATGGCGAACCCCTATCGTG
Found at i:51576026 original size:15 final size:15
Alignment explanation
Indices: 51575974--51576026 Score: 56
Period size: 15 Copynumber: 3.7 Consensus size: 15
51575964 GAGTAACCCT
*
51575974 TATGGCAAACTCACC
1 TATGGCGAACTCACC
*
51575989 TATGGTGAAC-C-CC
1 TATGGCGAACTCACC
* *
51576002 TATCGTGAACTCACC
1 TATGGCGAACTCACC
51576017 TATGGCGAAC
1 TATGGCGAAC
51576027 CCCTATCGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
13 11 0.35
14 2 0.06
15 18 0.58
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (15 bp):
TATGGCGAACTCACC
Found at i:51576944 original size:15 final size:13
Alignment explanation
Indices: 51576905--51576937 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
51576895 GTTCACAAGG
*
51576905 TATATTCAA-TCA
1 TATATTCAACACA
51576917 TATATTCAACACA
1 TATATTCAACACA
51576930 TATATTCA
1 TATATTCA
51576938 CATCACACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (13 bp):
TATATTCAACACA
Found at i:51581303 original size:15 final size:16
Alignment explanation
Indices: 51581285--51581366 Score: 59
Period size: 16 Copynumber: 5.2 Consensus size: 16
51581275 TAATAAATTT
*
51581285 TTTAAATTTA-AAAAA
1 TTTAAATATATAAAAA
51581300 TTTAAATATATAAAAA
1 TTTAAATATATAAAAA
*
51581316 -TT--ATATCTAAAAA
1 TTTAAATATATAAAAA
*
51581329 TTAAAAT-TATTAAAACTA
1 TTTAAATATA-TAAAA--A
51581347 TTTAAA-ATATATAAAA
1 TTTAAATATATA-AAAA
51581363 TTTA
1 TTTA
51581367 TTTTTTTAAT
Statistics
Matches: 53, Mismatches: 5, Indels: 17
0.71 0.07 0.23
Matches are distributed among these distances:
13 10 0.19
14 1 0.02
15 12 0.23
16 17 0.32
17 2 0.04
18 11 0.21
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
TTTAAATATATAAAAA
Found at i:51581343 original size:28 final size:26
Alignment explanation
Indices: 51581290--51581364 Score: 69
Period size: 28 Copynumber: 2.7 Consensus size: 26
51581280 AATTTTTTAA
* *
51581290 ATTTAAAAAATTTAAATATATAAAAATT
1 ATTT-AAAAATTAAAAT-TATAAAAACT
*
51581318 ATATCTAAAAATTAAAATTATTAAAACT
1 AT-T-TAAAAATTAAAATTATAAAAACT
51581346 ATTTAAAATATATAAAATT
1 ATTTAAAA-AT-TAAAATT
51581365 TATTTTTTTA
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
26 5 0.12
27 3 0.08
28 19 0.47
29 12 0.30
30 1 0.03
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.39
Consensus pattern (26 bp):
ATTTAAAAATTAAAATTATAAAAACT
Found at i:51581791 original size:12 final size:12
Alignment explanation
Indices: 51581763--51581802 Score: 59
Period size: 11 Copynumber: 3.6 Consensus size: 12
51581753 ATTATTTTAA
51581763 TTTTAAAATAC-
1 TTTTAAAATACT
51581774 TTTTAAAATACT
1 TTTTAAAATACT
51581786 TTTTAAAAT--T
1 TTTTAAAATACT
51581796 TTTTAAA
1 TTTTAAA
51581803 TTTTTTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
10 8 0.29
11 11 0.39
12 9 0.32
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (12 bp):
TTTTAAAATACT
Found at i:51581806 original size:8 final size:9
Alignment explanation
Indices: 51581785--51581825 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
51581775 TTTAAAATAC
*
51581785 TTTTTAAAA
1 TTTTTTAAA
51581794 TTTTTTAAA
1 TTTTTTAAA
51581803 TTTTTTAAA
1 TTTTTTAAA
*
51581812 -TTTTAAAA
1 TTTTTTAAA
51581820 TTTTTT
1 TTTTTT
51581826 TAAAATACGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
8 7 0.25
9 21 0.75
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:51581820 original size:49 final size:48
Alignment explanation
Indices: 51581757--51581876 Score: 145
Period size: 49 Copynumber: 2.5 Consensus size: 48
51581747 ATTTTTATTA
51581757 TTTT-AATTTTAAAATACTTTTAAAATAC-TTTTTAAAATTTTTTAAATT
1 TTTTAAATTTTAAAATACTTTTAAAATACGTTTTT--AATTTTTTAAATT
** *
51581805 TTTTAAATTTTAAAATTTTTTTAAAATACGTTTTTAATTTTTTTAATT
1 TTTTAAATTTTAAAATACTTTTAAAATACGTTTTTAATTTTTTAAATT
**
51581853 TTAAAATATTTTTAAAATACTTTT
1 TTTTAA-A-TTTTAAAATACTTTT
51581877 TTTAATTTTT
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
48 20 0.33
49 23 0.38
50 18 0.30
ACGTcount: A:0.38, C:0.03, G:0.01, T:0.58
Consensus pattern (48 bp):
TTTTAAATTTTAAAATACTTTTAAAATACGTTTTTAATTTTTTAAATT
Found at i:51581826 original size:11 final size:11
Alignment explanation
Indices: 51581763--51581831 Score: 53
Period size: 11 Copynumber: 6.8 Consensus size: 11
51581753 ATTATTTTAA
**
51581763 TTTTAAAATAC
1 TTTTAAAATTT
*
51581774 TTTTAAAATACT
1 TTTTAAAAT-TT
51581786 TTTTAAAA-TT
1 TTTTAAAATTT
51581796 TTTT-AAA-TT
1 TTTTAAAATTT
51581805 TTTT-AAA---
1 TTTTAAAATTT
51581812 TTTTAAAATTT
1 TTTTAAAATTT
51581823 TTTTAAAAT
1 TTTTAAAAT
51581832 ACGTTTTTAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
7 4 0.08
8 3 0.06
9 12 0.24
10 5 0.10
11 18 0.36
12 8 0.16
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:51581839 original size:40 final size:39
Alignment explanation
Indices: 51581774--51581907 Score: 157
Period size: 39 Copynumber: 3.4 Consensus size: 39
51581764 TTTAAAATAC
51581774 TTTTAAAATACTTTTTAAAAT---TTTTTAAATTTTTTAAA
1 TTTTAAAATA-TTTTTAAAATACGTTTTT-AATTTTTTAAA
* *
51581812 TTTTAAAATTTTTTTAAAATACGTTTTTAATTTTTTTAA
1 TTTTAAAATATTTTTAAAATACGTTTTTAATTTTTTAAA
* * *
51581851 TTTTAAAATATTTTTAAAATACTTTTTTTAATTTTTTTTAT
1 TTTTAAAATATTTTTAAAATAC-GTTTTTAA-TTTTTTAAA
51581892 TTTTAAAATAATTTTT
1 TTTTAAAAT-ATTTTT
51581908 TAGATTTATT
Statistics
Matches: 85, Mismatches: 5, Indels: 8
0.87 0.05 0.08
Matches are distributed among these distances:
37 10 0.12
38 9 0.11
39 31 0.36
40 12 0.14
41 17 0.20
42 6 0.07
ACGTcount: A:0.35, C:0.02, G:0.01, T:0.62
Consensus pattern (39 bp):
TTTTAAAATATTTTTAAAATACGTTTTTAATTTTTTAAA
Found at i:51582522 original size:17 final size:18
Alignment explanation
Indices: 51582488--51582522 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
51582478 TTTTTAAAAT
*
51582488 TTTAAAATAATTTTTAAA
1 TTTAAAATAATTTATAAA
51582506 TTTAAAAT-ATTTATAAA
1 TTTAAAATAATTTATAAA
51582523 ATTCTCAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTTAAAATAATTTATAAA
Found at i:51582524 original size:18 final size:18
Alignment explanation
Indices: 51582479--51582525 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
51582469 TCAACAGAAT
51582479 TTTTAAAATTTTAAAATAA
1 TTTTAAAA-TTTAAAATAA
*
51582498 TTTTTAAATTTAAAAT-A
1 TTTTAAAATTTAAAATAA
51582515 TTTATAAAATT
1 TTT-TAAAATT
51582526 CTCAAATTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 4 0.16
18 14 0.56
19 7 0.28
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAAAATTTAAAATAA
Done.