Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 16 of 199
Found at i:6785270 original size:87 final size:88
Alignment explanation
Indices: 6785161--6785346 Score: 311
Period size: 87 Copynumber: 2.1 Consensus size: 88
6785151 ATAAGTGACA
*
6785161 AGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCAGTGATAACTGACAAGTGATAAGTGGTA
1 AGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCAGTGACAACTGACAAGTGATAAGTGGTA
*
6785226 GCTTTAGCTGCACTTATCTGATC
66 GCTTTAGCTACACTTATCTGATC
* * *
6785249 AGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCGGTGACAAGTGACAAGTGATAAGTGGTA
1 AGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCAGTGACAACTGACAAGTGATAAGTGGTA
6785313 GCTTTAGCTACACTTATCTGATC
66 GCTTTAGCTACACTTATCTGATC
*
6785336 AGTGACAAGTG
1 AGTGATAAGTG
6785347 ATAAATGTGA
Statistics
Matches: 92, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
87 77 0.84
88 15 0.16
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31
Consensus pattern (88 bp):
AGTGATAAGTGGTAACTTTAGCTACACTTATCTGATCAGTGACAACTGACAAGTGATAAGTGGTA
GCTTTAGCTACACTTATCTGATC
Found at i:6785276 original size:36 final size:37
Alignment explanation
Indices: 6785212--6785295 Score: 134
Period size: 36 Copynumber: 2.3 Consensus size: 37
6785202 ATAACTGACA
*
6785212 AGTGATAAGTGGTAGCTTTAGCTGCACTTATCTGATC
1 AGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
6785249 AGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATC
1 AGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
* *
6785285 GGTGACAAGTG
1 AGTGATAAGTG
6785296 ACAAGTGATA
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
36 28 0.64
37 16 0.36
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (37 bp):
AGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATC
Found at i:6785333 original size:51 final size:50
Alignment explanation
Indices: 6785249--6785347 Score: 180
Period size: 51 Copynumber: 2.0 Consensus size: 50
6785239 TTATCTGATC
*
6785249 AGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCGGTGACAAGTGACA
1 AGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACAAGTGACA
6785299 AGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGA
1 AGTGATAAGTGGTAGC-TTAGCTACACTTATCTGATCAGTGACAAGTGA
6785348 TAAATGTGAT
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
50 16 0.34
51 31 0.66
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.29
Consensus pattern (50 bp):
AGTGATAAGTGGTAGCTTAGCTACACTTATCTGATCAGTGACAAGTGACA
Found at i:6790027 original size:15 final size:15
Alignment explanation
Indices: 6790002--6790039 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
6789992 AGACCATGGA
*
6790002 AGAAGAGGTGGA-GT
1 AGAAGAAGTGGAGGT
6790016 ATGAAGAAGTGGAGGT
1 A-GAAGAAGTGGAGGT
6790032 AGAAGAAG
1 AGAAGAAG
6790040 AAGGAGAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 1 0.05
15 17 0.81
16 3 0.14
ACGTcount: A:0.42, C:0.00, G:0.45, T:0.13
Consensus pattern (15 bp):
AGAAGAAGTGGAGGT
Found at i:6790038 original size:3 final size:3
Alignment explanation
Indices: 6790032--6790082 Score: 59
Period size: 3 Copynumber: 17.0 Consensus size: 3
6790022 AAGTGGAGGT
* * *
6790032 AGA AGA AGA AGG AGA GGA AGA A-A TAGA AGA AGA AGA GGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA AGA AGA AGA AGA AGA
6790077 AGA AGA
1 AGA AGA
6790083 CCTGGATGTC
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 1 0.03
3 38 0.95
4 1 0.03
ACGTcount: A:0.61, C:0.00, G:0.37, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:6790048 original size:18 final size:18
Alignment explanation
Indices: 6790018--6790081 Score: 67
Period size: 18 Copynumber: 3.4 Consensus size: 18
6790008 GGTGGAGTAT
*
6790018 GAAGAAGTG-GAGGTAGAA
1 GAAGAAG-GAGAGGAAGAA
6790036 GAAGAAGGAGAGGAAGAAATA
1 GAAGAAGGAGAGGAAG--A-A
*
6790057 GAAGAAGAAGAGGAAGAA
1 GAAGAAGGAGAGGAAGAA
6790075 GAAGAAG
1 GAAGAAG
6790082 ACCTGGATGT
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
17 1 0.03
18 21 0.52
19 1 0.03
20 1 0.03
21 16 0.40
ACGTcount: A:0.55, C:0.00, G:0.41, T:0.05
Consensus pattern (18 bp):
GAAGAAGGAGAGGAAGAA
Found at i:6794454 original size:21 final size:21
Alignment explanation
Indices: 6794428--6794476 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
6794418 TTCTTCATTA
*
6794428 TCTTCTTCTTCGTCTTGCTCT
1 TCTTCTTCTTCGACTTGCTCT
* * *
6794449 TGTTCTCCTTCGACTTGTTCT
1 TCTTCTTCTTCGACTTGCTCT
6794470 TCTTCTT
1 TCTTCTT
6794477 TATGATTATC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.31, G:0.10, T:0.57
Consensus pattern (21 bp):
TCTTCTTCTTCGACTTGCTCT
Found at i:6798323 original size:52 final size:52
Alignment explanation
Indices: 6798263--6798368 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
6798253 GATGAATAAC
6798263 ATTGATAATTATTAATTAACGTGTGCTGTAATAGTTAAAAAAGGCATTGAAT
1 ATTGATAATTATTAATTAACGTGTGCTGTAATAGTTAAAAAAGGCATTGAAT
6798315 ATTGATAATTATTAATTAACGTGTGCTGTAATAGTTAAAAAAGGCATTGAAT
1 ATTGATAATTATTAATTAACGTGTGCTGTAATAGTTAAAAAAGGCATTGAAT
6798367 AT
1 AT
6798369 CTCACCTGAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.41, C:0.06, G:0.17, T:0.37
Consensus pattern (52 bp):
ATTGATAATTATTAATTAACGTGTGCTGTAATAGTTAAAAAAGGCATTGAAT
Found at i:6809343 original size:29 final size:29
Alignment explanation
Indices: 6809291--6809355 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
6809281 ACAATTAGAT
*
6809291 TTAAATTTTAAAATTCGAAAAGTATAAAAA
1 TTAAATTTTAAAAATC-AAAAGTATAAAAA
* *
6809321 TTAAATTCTTAAAAAT-AAAAGTATATAGA
1 TTAAATT-TTAAAAATCAAAAGTATAAAAA
6809350 TTAAAT
1 TTAAAT
6809356 CTCAAAATTG
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
29 17 0.55
30 7 0.23
31 7 0.23
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (29 bp):
TTAAATTTTAAAAATCAAAAGTATAAAAA
Found at i:6818488 original size:63 final size:63
Alignment explanation
Indices: 6818379--6818505 Score: 173
Period size: 63 Copynumber: 2.0 Consensus size: 63
6818369 AAGTATGGTG
* * *
6818379 CTTTAGTGCCATATGGTATATCTATCTGGACCATTATAAACATGCCATACTTGGCACAATAGA
1 CTTTAGTGCCATATGGTATAGCTATCTGCACCATTATAAACATGCCATACTTGGCACAAAAGA
* * * * * *
6818442 CTTTGGTGCGATATGGTATAGCTATCTTCACCATTATAACCCTGCCATATTTGGCACAAAAGA
1 CTTTAGTGCCATATGGTATAGCTATCTGCACCATTATAAACATGCCATACTTGGCACAAAAGA
6818505 C
1 C
6818506 GGATACACAT
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (63 bp):
CTTTAGTGCCATATGGTATAGCTATCTGCACCATTATAAACATGCCATACTTGGCACAAAAGA
Found at i:6821154 original size:26 final size:25
Alignment explanation
Indices: 6821125--6821173 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
6821115 ATATTTAATA
6821125 ATTATATATATATATCTTTTATTACT
1 ATTATATAT-TATATCTTTTATTACT
* *
6821151 ATTATATATTTTTTCTTTTATTA
1 ATTATATATTATATCTTTTATTA
6821174 AAATTTTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 12 0.57
26 9 0.43
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (25 bp):
ATTATATATTATATCTTTTATTACT
Found at i:6823462 original size:73 final size:73
Alignment explanation
Indices: 6823379--6823637 Score: 509
Period size: 73 Copynumber: 3.5 Consensus size: 73
6823369 ACAACTTGAC
6823379 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
6823444 CACTAACA
66 CACTAACA
6823452 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
6823517 CACTAACA
66 CACTAACA
6823525 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
6823590 CACTAACA
66 CACTAACA
*
6823598 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
6823638 AAATAATAAT
Statistics
Matches: 185, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 185 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:6827944 original size:73 final size:73
Alignment explanation
Indices: 6827865--6828050 Score: 345
Period size: 73 Copynumber: 2.5 Consensus size: 73
6827855 ACAAGCTTAC
6827865 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
6827930 CACTAACA
66 CACTAACA
* *
6827938 AACTTAGTTGGAATACAATTAAGTTTCATCATTACACCCACTTAAAATAAATCACCACCTACTAC
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
6828003 CACTAACA
66 CACTAACA
*
6828011 AACTTAGTTGGAATACAACTAAGTTACATCATTACATCCA
1 AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCA
6828051 AAATAATAAT
Statistics
Matches: 108, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
73 108 1.00
ACGTcount: A:0.41, C:0.25, G:0.06, T:0.28
Consensus pattern (73 bp):
AACTTAGTTGGAATACAACTAAGTTTCATCATTACATCCACTTAAAATAAATCACCACCTACTAC
CACTAACA
Found at i:6829066 original size:15 final size:16
Alignment explanation
Indices: 6829046--6829075 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6829036 ACCAATTAAA
6829046 ACCAT-AACCCATGAG
1 ACCATAAACCCATGAG
6829061 ACCATAAACCCATGA
1 ACCATAAACCCATGA
6829076 TTCGTTTATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.33, G:0.10, T:0.13
Consensus pattern (16 bp):
ACCATAAACCCATGAG
Found at i:6832310 original size:140 final size:140
Alignment explanation
Indices: 6832065--6832321 Score: 349
Period size: 140 Copynumber: 1.8 Consensus size: 140
6832055 TTCAAAGGTT
* * *
6832065 AAAGTACCTAACAGATTATCCTATAAAACACAAATGAAAGAAGGAACCAACTCTTCTAATTCGAG
1 AAAGCACCCAACAGATTATCCTATAAAACACAAATGAAAGAAGGAACCAACTCTCCTAATTCGAG
* *
6832130 TCCAGTAAATCAATCATCAATAGCAAAATTAAAATGACCTCAACTCTGAATCAACAACTGATTAT
66 TCCAGTAAATCAATAATCAATAGCAAAATTAAAATCACCTCAACTCTGAATCAACAACTGATTAT
6832195 TTCACCGATG
131 TTCACCGATG
* * **
6832205 AAAGCACCCAACAGATTATCCTATAAAATACAAAT-AACGAAAGGGTCCAAACTCTCCTAATTCG
1 AAAGCACCCAACAGATTATCCTATAAAACACAAATGAAAG-AAGGAACC-AACTCTCCTAATTCG
* * * *
6832269 ATTCCA-TAAATCAATAATCAATAGCAAAA-TATACATCACCTCATCTTTGAATC
64 AGTCCAGTAAATCAATAATCAATAGCAAAATTA-AAATCACCTCAACTCTGAATC
6832322 TTTGTTCTTT
Statistics
Matches: 101, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
139 5 0.05
140 77 0.76
141 19 0.19
ACGTcount: A:0.44, C:0.23, G:0.09, T:0.25
Consensus pattern (140 bp):
AAAGCACCCAACAGATTATCCTATAAAACACAAATGAAAGAAGGAACCAACTCTCCTAATTCGAG
TCCAGTAAATCAATAATCAATAGCAAAATTAAAATCACCTCAACTCTGAATCAACAACTGATTAT
TTCACCGATG
Found at i:6842362 original size:17 final size:17
Alignment explanation
Indices: 6842340--6842394 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
6842330 AGACTGAAAC
6842340 TTGCCACAGAGGTTACT
1 TTGCCACAGAGGTTACT
* * *
6842357 TTGCCAC-CATG-AAC-
1 TTGCCACAGAGGTTACT
6842371 TTGCCACAGAGGTTACT
1 TTGCCACAGAGGTTACT
6842388 TTGCCAC
1 TTGCCAC
6842395 CATGAAATTG
Statistics
Matches: 29, Mismatches: 6, Indels: 6
0.71 0.15 0.15
Matches are distributed among these distances:
14 7 0.24
15 4 0.14
16 4 0.14
17 14 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (17 bp):
TTGCCACAGAGGTTACT
Found at i:6842375 original size:31 final size:31
Alignment explanation
Indices: 6842337--6842405 Score: 129
Period size: 31 Copynumber: 2.2 Consensus size: 31
6842327 CAGAGACTGA
6842337 AACTTGCCACAGAGGTTACTTTGCCACCATG
1 AACTTGCCACAGAGGTTACTTTGCCACCATG
6842368 AACTTGCCACAGAGGTTACTTTGCCACCATG
1 AACTTGCCACAGAGGTTACTTTGCCACCATG
*
6842399 AAATTGC
1 AACTTGC
6842406 TTCCTGGTTG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (31 bp):
AACTTGCCACAGAGGTTACTTTGCCACCATG
Found at i:6856583 original size:16 final size:14
Alignment explanation
Indices: 6856561--6856595 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
6856551 TTCAAATTTA
*
6856561 TAAAAAAATGAATAT
1 TAAAAAAAT-AACAT
6856576 TAAAAAAATAACAT
1 TAAAAAAATAACAT
6856590 TAAAAA
1 TAAAAA
6856596 CAAATTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.53
15 9 0.47
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (14 bp):
TAAAAAAATAACAT
Found at i:6865980 original size:31 final size:33
Alignment explanation
Indices: 6865942--6866010 Score: 97
Period size: 32 Copynumber: 2.2 Consensus size: 33
6865932 TCTAGTTTAT
*
6865942 ATTTTTTA-TAATTTTTAAAGAATTAAAATA-A
1 ATTTTTTATTAATTTTTAAAAAATTAAAATATA
* *
6865973 ATTTTTTATTATTTTTTAAAAAATTAAAGTATA
1 ATTTTTTATTAATTTTTAAAAAATTAAAATATA
6866006 ATTTT
1 ATTTT
6866011 ACTTTATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 8 0.24
32 19 0.58
33 6 0.18
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (33 bp):
ATTTTTTATTAATTTTTAAAAAATTAAAATATA
Found at i:6866018 original size:33 final size:32
Alignment explanation
Indices: 6865953--6866036 Score: 80
Period size: 32 Copynumber: 2.6 Consensus size: 32
6865943 TTTTTTATAA
* *
6865953 TTTTTAAAGAATTAAAATAAATTTTTTATTAT
1 TTTTTAAAAAATTAAAATAAATTTTCTATTAT
*
6865985 TTTTTAAAAAATTAAAGTATAATTTTACT-TTAT
1 TTTTTAAAAAATTAAAATA-AATTTT-CTATTAT
* **
6866018 TAATTTAAAACTTTAAAAT
1 T-TTTTAAAAAATTAAAAT
6866037 TTTTAAACGA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
32 17 0.40
33 11 0.26
34 14 0.33
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.50
Consensus pattern (32 bp):
TTTTTAAAAAATTAAAATAAATTTTCTATTAT
Found at i:6874465 original size:31 final size:31
Alignment explanation
Indices: 6874427--6874490 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
6874417 CCATTCTCCC
6874427 AATGTGTTAGGATCGTCCCGATTAAGCAACG
1 AATGTGTTAGGATCGTCCCGATTAAGCAACG
6874458 AATGTGTTAGGATCGTCCCGATTAAGCAACG
1 AATGTGTTAGGATCGTCCCGATTAAGCAACG
6874489 AA
1 AA
6874491 CAAGTAAAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (31 bp):
AATGTGTTAGGATCGTCCCGATTAAGCAACG
Found at i:6874807 original size:24 final size:24
Alignment explanation
Indices: 6874780--6874831 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
6874770 TTAGTAAGTC
*
6874780 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
6874804 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
6874828 AAAT
1 AAAT
6874832 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:6885665 original size:19 final size:19
Alignment explanation
Indices: 6885630--6885680 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 19
6885620 TATAATTAAT
*
6885630 ATAATTTA-TT-ATTTTTA
1 ATAATTTATTTAATATTTA
6885647 ATAATTTATTTAATATTTA
1 ATAATTTATTTAATATTTA
*
6885666 A-ATTTTATTTTAATA
1 ATAATTTA-TTTAATA
6885681 GTGAATTTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 8 0.28
18 7 0.24
19 14 0.48
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
ATAATTTATTTAATATTTA
Found at i:6887158 original size:14 final size:15
Alignment explanation
Indices: 6887121--6887158 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
6887111 CATAAGGAAT
6887121 TATTTAAAAAATAAA
1 TATTTAAAAAATAAA
* *
6887136 TATTAAAAAAATACA
1 TATTTAAAAAATAAA
6887151 T-TTTAAAA
1 TATTTAAAA
6887159 TTACTTGTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (15 bp):
TATTTAAAAAATAAA
Found at i:6887237 original size:18 final size:17
Alignment explanation
Indices: 6887209--6887256 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
6887199 ACCATTATTT
6887209 TATTATATATTTTAATTA
1 TATT-TATATTTTAATTA
* * *
6887227 TTTTCTATATTATATTTA
1 TATT-TATATTTTAATTA
6887245 TATTTATATTTT
1 TATTTATATTTT
6887257 TAGAATGGAC
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
17 7 0.29
18 17 0.71
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (17 bp):
TATTTATATTTTAATTA
Found at i:6887258 original size:14 final size:13
Alignment explanation
Indices: 6887209--6887258 Score: 52
Period size: 12 Copynumber: 4.0 Consensus size: 13
6887199 ACCATTATTT
6887209 TATTATATATTTTA
1 TATTATAT-TTTTA
*
6887223 -ATTAT-TTTCTA
1 TATTATATTTTTA
*
6887234 TATTATATTTATA
1 TATTATATTTTTA
6887247 T-TTATATTTTTA
1 TATTATATTTTTA
6887259 GAATGGACAA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 4 0.13
12 16 0.52
13 11 0.35
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (13 bp):
TATTATATTTTTA
Found at i:6891995 original size:21 final size:21
Alignment explanation
Indices: 6891969--6892008 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6891959 TTGGGTCATC
6891969 TTCTTCTTCCTCTTGTTCTGG
1 TTCTTCTTCCTCTTGTTCTGG
* *
6891990 TTCTTCTTCTTGTTGTTCT
1 TTCTTCTTCCTCTTGTTCT
6892009 TCTTCAGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.00, C:0.25, G:0.12, T:0.62
Consensus pattern (21 bp):
TTCTTCTTCCTCTTGTTCTGG
Found at i:6895362 original size:6 final size:6
Alignment explanation
Indices: 6895351--6895378 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
6895341 GGTTAGTTTA
6895351 TTTATT TTTATT TTTATT TTTATT TTTA
1 TTTATT TTTATT TTTATT TTTATT TTTA
6895379 ATTTACGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTATT
Found at i:6908187 original size:17 final size:18
Alignment explanation
Indices: 6908165--6908198 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
6908155 ACTCTCTCTT
6908165 TTTTCA-GTTTTACTTTA
1 TTTTCACGTTTTACTTTA
*
6908182 TTTTCACTTTTTACTTT
1 TTTTCACGTTTTACTTT
6908199 TAAAATTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.15, C:0.15, G:0.03, T:0.68
Consensus pattern (18 bp):
TTTTCACGTTTTACTTTA
Found at i:6911201 original size:29 final size:31
Alignment explanation
Indices: 6911140--6911211 Score: 103
Period size: 29 Copynumber: 2.4 Consensus size: 31
6911130 ACTACTAAAA
* *
6911140 TAGTCACTTTTGTTTGGTTAATGTTACATTT
1 TAGTCACTTATGTTTGGTAAATGTTACATTT
*
6911171 TAGTCACTTATGTTT-G-AAATGTTACGTTT
1 TAGTCACTTATGTTTGGTAAATGTTACATTT
6911200 TAGTCACTTATG
1 TAGTCACTTATG
6911212 CTATCATGTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
29 23 0.61
30 1 0.03
31 14 0.37
ACGTcount: A:0.22, C:0.11, G:0.17, T:0.50
Consensus pattern (31 bp):
TAGTCACTTATGTTTGGTAAATGTTACATTT
Found at i:6918162 original size:20 final size:21
Alignment explanation
Indices: 6918139--6918193 Score: 60
Period size: 20 Copynumber: 2.6 Consensus size: 21
6918129 CTACGTAAAC
6918139 TTAAATTATTTTTTAAATAA-
1 TTAAATTATTTTTTAAATAAG
* *
6918159 TTAAAATCA-TTTTTACATAAG
1 TT-AAATTATTTTTTAAATAAG
6918180 TTTAAATTATTTTT
1 -TTAAATTATTTTT
6918194 ATTGATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
20 12 0.43
21 10 0.36
22 6 0.21
ACGTcount: A:0.40, C:0.04, G:0.02, T:0.55
Consensus pattern (21 bp):
TTAAATTATTTTTTAAATAAG
Found at i:6918194 original size:21 final size:20
Alignment explanation
Indices: 6918139--6918194 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 20
6918129 CTACGTAAAC
6918139 TTAAATTATTTTTTAAATAAT
1 TTAAATTA-TTTTTAAATAAT
* * *
6918160 TAAAATCATTTTTACATAAGT
1 TTAAATTATTTTTAAATAA-T
6918181 TTAAATTATTTTTA
1 TTAAATTATTTTTA
6918195 TTGATATAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
20 10 0.34
21 19 0.66
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.54
Consensus pattern (20 bp):
TTAAATTATTTTTAAATAAT
Found at i:6918788 original size:12 final size:12
Alignment explanation
Indices: 6918772--6918819 Score: 54
Period size: 11 Copynumber: 4.5 Consensus size: 12
6918762 TTTATTTTTT
6918772 ATTTTTAAAAT-
1 ATTTTTAAAATA
6918783 ATTTTTAAAATA
1 ATTTTTAAAATA
6918795 ATTTTT----T-
1 ATTTTTAAAATA
6918802 ATTTTTAAAATA
1 ATTTTTAAAATA
6918814 ATTTTT
1 ATTTTT
6918820 TGTGTTTATT
Statistics
Matches: 31, Mismatches: 0, Indels: 11
0.74 0.00 0.26
Matches are distributed among these distances:
7 6 0.19
8 1 0.03
11 12 0.39
12 12 0.39
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
ATTTTTAAAATA
Found at i:6918819 original size:20 final size:19
Alignment explanation
Indices: 6918782--6918820 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
6918772 ATTTTTAAAA
6918782 TATTTTTAAAATAATTTTT
1 TATTTTTAAAATAATTTTT
6918801 TATTTTTAAAATAATTTTT
1 TATTTTTAAAATAATTTTT
6918820 T
1 T
6918821 GTGTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (19 bp):
TATTTTTAAAATAATTTTT
Found at i:6918827 original size:19 final size:19
Alignment explanation
Indices: 6918786--6918827 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
6918776 TTAAAATATT
*
6918786 TTTAAAATAATTTTTTATT
1 TTTAAAATAATTTTTTATG
*
6918805 TTTAAAATAATTTTTTGTG
1 TTTAAAATAATTTTTTATG
6918824 TTTA
1 TTTA
6918828 TTTAAAAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (19 bp):
TTTAAAATAATTTTTTATG
Found at i:6920324 original size:76 final size:74
Alignment explanation
Indices: 6920186--6920345 Score: 302
Period size: 76 Copynumber: 2.1 Consensus size: 74
6920176 TGTTGACTCT
6920186 ATTTGATTAATAAAAGTTGTATTGTATAAAAAAATATTTTAAAATTAAATATACATGTATAAATT
1 ATTTGATTAATAAAAGTTGTATTGTATAAAAAAATATTTTAAAATTAAATATACATGTATAAATT
6920251 TTAAAAATA
66 TTAAAAATA
6920260 ATTTGATTAATAAAAGTTGTATTGTATAAAAATAAATATTTTAAAATTAAATATACATGTATAAA
1 ATTTGATTAATAAAAGTTGTATTGTAT-AAAA-AAATATTTTAAAATTAAATATACATGTATAAA
6920325 TTTTAAAAATA
64 TTTTAAAAATA
6920336 ATTTGATTAA
1 ATTTGATTAA
6920346 AACATACAAC
Statistics
Matches: 84, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
74 27 0.32
75 4 0.05
76 53 0.63
ACGTcount: A:0.51, C:0.01, G:0.07, T:0.41
Consensus pattern (74 bp):
ATTTGATTAATAAAAGTTGTATTGTATAAAAAAATATTTTAAAATTAAATATACATGTATAAATT
TTAAAAATA
Found at i:6935078 original size:2 final size:2
Alignment explanation
Indices: 6935071--6935095 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
6935061 TGATAACGTT
6935071 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
6935096 ATATATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:6958804 original size:15 final size:15
Alignment explanation
Indices: 6958780--6958810 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6958770 ACCGCGGAAA
6958780 GCTCTAATCCAAGGG
1 GCTCTAATCCAAGGG
*
6958795 GCTCTGATCCAAGGG
1 GCTCTAATCCAAGGG
6958810 G
1 G
6958811 TTGAGACCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.26, G:0.32, T:0.19
Consensus pattern (15 bp):
GCTCTAATCCAAGGG
Found at i:6960042 original size:33 final size:33
Alignment explanation
Indices: 6959974--6960046 Score: 89
Period size: 33 Copynumber: 2.2 Consensus size: 33
6959964 TGTATATTTA
* *
6959974 GAAAAT-AAAAAGAAAATGACATTATCCTCCTG
1 GAAAATAAAAAAGAAAATAACATTATCATCCTG
6960006 GAAAATAAAAAAGAAAA-AACATTATTGCATCC-G
1 GAAAATAAAAAAGAAAATAACATTA-T-CATCCTG
6960039 GAAAATAA
1 GAAAATAA
6960047 TAAACAAACA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
32 12 0.33
33 20 0.56
34 4 0.11
ACGTcount: A:0.56, C:0.12, G:0.12, T:0.19
Consensus pattern (33 bp):
GAAAATAAAAAAGAAAATAACATTATCATCCTG
Found at i:6962090 original size:29 final size:31
Alignment explanation
Indices: 6962024--6962091 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 31
6962014 TATTTTATAT
*
6962024 AATTATATACATTAAATTTTAATTATAATTC
1 AATTATATACATTAAATTTAAATTATAATTC
* * *
6962055 AAATATATATA-TAAA-TTAAATTATGATTC
1 AATTATATACATTAAATTTAAATTATAATTC
*
6962084 ATTTATAT
1 AATTATAT
6962092 GTATTTAAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
29 18 0.58
30 4 0.13
31 9 0.29
ACGTcount: A:0.47, C:0.04, G:0.01, T:0.47
Consensus pattern (31 bp):
AATTATATACATTAAATTTAAATTATAATTC
Found at i:6977435 original size:16 final size:16
Alignment explanation
Indices: 6977414--6977444 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6977404 TTAGAATGTT
6977414 TGTATTATTTTGTATC
1 TGTATTATTTTGTATC
*
6977430 TGTATTTTTTTGTAT
1 TGTATTATTTTGTAT
6977445 TTTTTCTTAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.03, G:0.13, T:0.68
Consensus pattern (16 bp):
TGTATTATTTTGTATC
Found at i:6977830 original size:12 final size:13
Alignment explanation
Indices: 6977799--6977833 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
6977789 AGTTCTTTAT
6977799 TATTTTTGAGAAG
1 TATTTTTGAGAAG
6977812 TATTTTTGAGAAG
1 TATTTTTGAGAAG
6977825 TATTTTTGA
1 TATTTTTGA
6977834 TAAATTTGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (13 bp):
TATTTTTGAGAAG
Found at i:6978454 original size:22 final size:21
Alignment explanation
Indices: 6978429--6978472 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
6978419 AAGCATATGA
* *
6978429 AAATTATTTGGTTATATTCAAT
1 AAATGATTTGGTTA-ATACAAT
6978451 AAATGATTTGGTTAATACAAT
1 AAATGATTTGGTTAATACAAT
6978472 A
1 A
6978473 CTTATATTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.41, C:0.05, G:0.11, T:0.43
Consensus pattern (21 bp):
AAATGATTTGGTTAATACAAT
Found at i:6978481 original size:22 final size:22
Alignment explanation
Indices: 6978456--6978526 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
6978446 TCAATAAATG
6978456 ATTTGGTTAATACAATACTTAT
1 ATTTGGTTAATACAATACTTAT
* * **
6978478 ATTT-GATAA-GCATATGA-AAAT
1 ATTTGGTTAATACA-AT-ACTTAT
6978499 GATTTGGTTAATACAATACTTAT
1 -ATTTGGTTAATACAATACTTAT
6978522 ATTTG
1 ATTTG
6978527 ATAAGCATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 2 0.06
21 8 0.23
22 15 0.43
23 8 0.23
24 2 0.06
ACGTcount: A:0.38, C:0.07, G:0.13, T:0.42
Consensus pattern (22 bp):
ATTTGGTTAATACAATACTTAT
Found at i:6978499 original size:44 final size:44
Alignment explanation
Indices: 6978451--6978544 Score: 188
Period size: 44 Copynumber: 2.1 Consensus size: 44
6978441 TATATTCAAT
6978451 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
6978495 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
1 AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
6978539 AAATGA
1 AAATGA
6978545 AAGTCGAGAC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.43, C:0.06, G:0.14, T:0.37
Consensus pattern (44 bp):
AAATGATTTGGTTAATACAATACTTATATTTGATAAGCATATGA
Found at i:6981338 original size:17 final size:17
Alignment explanation
Indices: 6981318--6981698 Score: 106
Period size: 17 Copynumber: 22.6 Consensus size: 17
6981308 AGAAAAGGAC
6981318 TTTTCATTTCAATTTATT
1 TTTTCATTTCAATTTA-T
* * *
6981336 TTTTAATTTCAATTCAA
1 TTTTCATTTCAATTTAT
*
6981353 ATTTCATTT-AATTT-T
1 TTTTCATTTCAATTTAT
*
6981368 ATATTCATTTCACATTTCA-
1 -TTTTCATTTCA-ATTT-AT
6981387 -TTTCATTT-AATTTTATT
1 TTTTCATTTCAA-TTTA-T
6981404 TTTTCATTT-AA-TT-T
1 TTTTCATTTCAATTTAT
*
6981418 TTTTCA--T-ATTTTATT
1 TTTTCATTTCAATTTA-T
*
6981433 TTTTCATTT-AAATT-T
1 TTTTCATTTCAATTTAT
* *
6981448 TTTTCTGTTTCCA-TT-T
1 TTTTC-ATTTCAATTTAT
6981464 TTTTCATTTCAATTTAT
1 TTTTCATTTCAATTTAT
*
6981481 ATTTTAATTTC-ATTTCA-
1 -TTTTCATTTCAATTT-AT
* *
6981498 TATTCATTTCAACGTTA-
1 TTTTCATTTCAA-TTTAT
*
6981515 TTTTCATTTCATATTCAT
1 TTTTCATTTCA-ATTTAT
6981533 TACAACTTTCATTTC-ATTTCAT
1 T-----TTTCATTTCAATTT-AT
* *
6981555 ATTTCATTTC-A--CA-
1 TTTTCATTTCAATTTAT
*
6981568 -TTTCATTTC--TTTTT
1 TTTTCATTTCAATTTAT
6981582 TTTTCATTTCAATTTATTT
1 TTTTCATTTCAATTTA--T
*
6981601 TTTTCATATTC-ATCT-T
1 TTTTCAT-TTCAATTTAT
*
6981617 TTCTCATTTCAA-TT-T
1 TTTTCATTTCAATTTAT
*
6981632 TTTTAATATTC-ATTT-T
1 TTTTCAT-TTCAATTTAT
6981648 TTTCTCATTTCAATTTATTTAT
1 TTT-TCATTTC-A---ATTTAT
6981670 TTTTCATTTCAATTTAT
1 TTTTCATTTCAATTTAT
*
6981687 ATTTTAATTTCA
1 -TTTTCATTTCA
6981699 TTTCAAATTT
Statistics
Matches: 276, Mismatches: 37, Indels: 100
0.67 0.09 0.24
Matches are distributed among these distances:
12 11 0.04
13 2 0.01
14 8 0.03
15 40 0.14
16 58 0.21
17 61 0.22
18 52 0.19
19 11 0.04
20 4 0.01
21 14 0.05
22 6 0.02
23 9 0.03
ACGTcount: A:0.24, C:0.13, G:0.01, T:0.62
Consensus pattern (17 bp):
TTTTCATTTCAATTTAT
Found at i:6981361 original size:5 final size:5
Alignment explanation
Indices: 6981353--6981720 Score: 73
Period size: 5 Copynumber: 69.2 Consensus size: 5
6981343 TTCAATTCAA
* * * *
6981353 ATTTC ATTTA ATTTT ATATTC ATTTCAC ATTTC ATTTC ATTTA ATTTT
1 ATTTC ATTTC ATTTC AT-TTC ATTT--C ATTTC ATTTC ATTTC ATTTC
* * * *
6981401 ATTT- -TTTC ATTTA ATTT- TTTTC ATATTTT ATTT- -TTTC ATTTAA
1 ATTTC ATTTC ATTTC ATTTC ATTTC --ATTTC ATTTC ATTTC ATTT-C
* * * * *
6981444 ATTT- TTTTC TGTTTCC ATTT- TTTTC ATTTC AATTTAT ATTTTA ATTTC
1 ATTTC ATTTC -ATTT-C ATTTC ATTTC ATTTC -ATTT-C A-TTTC ATTTC
* *
6981492 ATTTC ATATTC ATTTC AACGTT- ATTTTC ATTTC ATATTC ATTAC AACTTTC
1 ATTTC AT-TTC ATTTC -A-TTTC A-TTTC ATTTC AT-TTC ATTTC -A-TTTC
* * *
6981543 ATTTC ATTTC ATATTTC ATTTCAC ATTTC ATTTC TTTTT TTTTC ATTTC
1 ATTTC ATTTC --ATTTC ATTT--C ATTTC ATTTC ATTTC ATTTC ATTTC
* * *
6981592 AATTT- ATTT- TTTTC ATATTC ATCTT- -TTCTC ATTTC AATTT- TTTTA
1 -ATTTC ATTTC ATTTC AT-TTC AT-TTC ATT-TC ATTTC -ATTTC ATTTC
* * *
6981637 ATATTC ATTTT TTTCTC ATTTC AATTT- ATTT- ATTTTTC ATTTC AATTTAT
1 AT-TTC ATTTC ATT-TC ATTTC -ATTTC ATTTC A--TTTC ATTTC -ATTT-C
*
6981687 ATTTTA ATTTC ATTTC AAATTTC ATTTC ATTTC A
1 A-TTTC ATTTC ATTTC --ATTTC ATTTC ATTTC A
6981721 AATATTTTCT
Statistics
Matches: 275, Mismatches: 40, Indels: 96
0.67 0.10 0.23
Matches are distributed among these distances:
3 7 0.03
4 26 0.09
5 135 0.49
6 71 0.26
7 36 0.13
ACGTcount: A:0.24, C:0.14, G:0.01, T:0.62
Consensus pattern (5 bp):
ATTTC
Found at i:6981367 original size:28 final size:28
Alignment explanation
Indices: 6981336--6981399 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
6981326 TCAATTTATT
6981336 TTTTAATTTCAATTCAAATTTCATTTAA
1 TTTTAATTTCAATTCAAATTTCATTTAA
* * *
6981364 TTTT-ATATTCATTTCACATTTCATTTCA
1 TTTTAAT-TTCAATTCAAATTTCATTTAA
6981392 -TTTAATTT
1 TTTTAATTT
6981400 TATTTTTTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
27 7 0.23
28 24 0.77
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (28 bp):
TTTTAATTTCAATTCAAATTTCATTTAA
Found at i:6981410 original size:18 final size:18
Alignment explanation
Indices: 6981387--6981448 Score: 66
Period size: 18 Copynumber: 3.8 Consensus size: 18
6981377 TCACATTTCA
6981387 TTTCATTTAATTTTATTT
1 TTTCATTTAATTTTATTT
6981405 TTTCATTTAA---T-TTT
1 TTTCATTTAATTTTATTT
6981419 TTTCA--T-ATTTTATTT
1 TTTCATTTAATTTTATTT
6981434 TTTCATTTAAATTTT
1 TTTCATTT-AATTTT
6981449 TTTCTGTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 15
0.71 0.00 0.29
Matches are distributed among these distances:
11 1 0.03
12 1 0.03
14 9 0.25
15 9 0.25
17 1 0.03
18 10 0.28
19 5 0.14
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTCATTTAATTTTATTT
Found at i:6981411 original size:28 final size:28
Alignment explanation
Indices: 6981319--6981441 Score: 90
Period size: 29 Copynumber: 4.1 Consensus size: 28
6981309 GAAAAGGACT
*
6981319 TTTCATTTCAATTT-ATTTT-TTAATTTCA
1 TTTCATTTC-ATTTAATTTTATT-TTTTCA
*
6981347 ATTCAAATTTCATTTAATTTTATATTCATTTCACA
1 TTTC--ATTTCATTTAATTTTAT-TT--TTT--CA
6981382 TTTCATTTCATTTAATTTTATTTTTTCA
1 TTTCATTTCATTTAATTTTATTTTTTCA
* *
6981410 TTTAATTT-TTTTCATATTTTATTTTTTCA
1 TTTCATTTCATTT-A-ATTTTATTTTTTCA
6981439 TTT
1 TTT
6981442 AAATTTTTTT
Statistics
Matches: 79, Mismatches: 5, Indels: 21
0.75 0.05 0.20
Matches are distributed among these distances:
27 3 0.04
28 13 0.16
29 21 0.27
30 13 0.16
31 1 0.01
32 3 0.04
33 20 0.25
35 5 0.06
ACGTcount: A:0.25, C:0.11, G:0.00, T:0.64
Consensus pattern (28 bp):
TTTCATTTCATTTAATTTTATTTTTTCA
Found at i:6981436 original size:30 final size:29
Alignment explanation
Indices: 6981396--6981478 Score: 105
Period size: 29 Copynumber: 2.8 Consensus size: 29
6981386 ATTTCATTTA
6981396 ATTTTATTTTTTCATTT-AATTTTTTTCAT
1 ATTTTATTTTTTCATTTAAATTTTTTTC-T
6981425 ATTTTATTTTTTCATTTAAATTTTTTTCT
1 ATTTTATTTTTTCATTTAAATTTTTTTCT
* * *
6981454 GTTTCCATTTTTTTCATTTCAATTT
1 ATTT-TA-TTTTTTCATTTAAATTT
6981479 ATATTTTAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
29 21 0.44
30 11 0.23
31 16 0.33
ACGTcount: A:0.19, C:0.10, G:0.01, T:0.70
Consensus pattern (29 bp):
ATTTTATTTTTTCATTTAAATTTTTTTCT
Found at i:6981506 original size:28 final size:27
Alignment explanation
Indices: 6981465--6981613 Score: 101
Period size: 28 Copynumber: 5.4 Consensus size: 27
6981455 TTTCCATTTT
*
6981465 TTTCAT-TTCAATTTATATTTTAATTTCA
1 TTTCATATTC-ATTTA-ACTTTAATTTCA
* *
6981493 TTTCATATTCATTTCAACGTTATTTTCA
1 TTTCATATTCATTT-AACTTTAATTTCA
* *
6981521 TTTCATATTCATTACAACTTTCATTTCA
1 TTTCATATTCATT-TAACTTTAATTTCA
* *
6981549 TTTCATATTTCATTTCACATTTCATTTC-
1 TTTCATA-TTCATTTAAC-TTTAATTTCA
** * *
6981577 TTTTTTTTTCATTTCAA-TTT-ATTT-T
1 TTTCATATTCATTT-AACTTTAATTTCA
6981602 TTTCATATTCAT
1 TTTCATATTCAT
6981614 CTTTTCTCAT
Statistics
Matches: 98, Mismatches: 16, Indels: 17
0.75 0.12 0.13
Matches are distributed among these distances:
25 13 0.13
26 3 0.03
27 7 0.07
28 56 0.57
29 19 0.19
ACGTcount: A:0.24, C:0.16, G:0.01, T:0.59
Consensus pattern (27 bp):
TTTCATATTCATTTAACTTTAATTTCA
Found at i:6981601 original size:21 final size:21
Alignment explanation
Indices: 6981566--6981713 Score: 81
Period size: 21 Copynumber: 6.7 Consensus size: 21
6981556 TTTCATTTCA
*
6981566 CATTTC-ATTTCTTTTTTTTT
1 CATTTCAATTTATTTTTTTTT
6981586 CATTTCAATTTA--TTTTTTT
1 CATTTCAATTTATTTTTTTTT
* **
6981605 CATATTC-ATCTT-TTCTCATTT
1 CAT-TTCAAT-TTATTTTTTTTT
* *
6981626 CAATTTTTTTAATATTCATTTTTTTCT
1 C-A---TTTCAAT-TT-ATTTTTTTTT
*
6981653 CATTTCAATTTATTTATTTTT
1 CATTTCAATTTATTTTTTTTT
*
6981674 CATTTCAATTTATATTTTAATTT
1 CATTTCAATTTAT-TTTT-TTTT
6981697 CATTTCAAATTTCATTT
1 CATTTC-AATTT-ATTT
6981714 CATTTCAAAT
Statistics
Matches: 97, Mismatches: 15, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
19 12 0.12
20 11 0.11
21 30 0.31
22 6 0.06
23 15 0.15
24 9 0.09
25 7 0.07
26 1 0.01
27 6 0.06
ACGTcount: A:0.22, C:0.14, G:0.00, T:0.64
Consensus pattern (21 bp):
CATTTCAATTTATTTTTTTTT
Found at i:6981626 original size:67 final size:71
Alignment explanation
Indices: 6981555--6981718 Score: 173
Period size: 67 Copynumber: 2.4 Consensus size: 71
6981545 TTCATTTCAT
*
6981555 ATTTCATTTCACATTTCATTTC-TTTTTTTTTCATTTCAATTTA-TT-TTTTTCATATTC-ATCT
1 ATTTCATTTCA-ATTTCATTTCATTTTTTTCTCATTTCAATTTATTTATTTTTCAT-TTCAATCT
*
6981616 -T-TTCTC
64 ATATTCTA
* * *
6981622 ATTTCAATTT--TTTTAATATTCATTTTTTTCTCATTTCAATTTATTTATTTTTCATTTCAATTT
1 ATTTC-ATTTCAATTTCAT-TTCATTTTTTTCTCATTTCAATTTATTTATTTTTCATTTCAATCT
*
6981685 ATATTTTA
64 ATATTCTA
6981693 ATTTCATTTCAAATTTCATTTCATTT
1 ATTTCATTTC-AATTTCATTTCATTT
6981719 CAAATATTTT
Statistics
Matches: 78, Mismatches: 8, Indels: 17
0.76 0.08 0.17
Matches are distributed among these distances:
65 5 0.06
66 3 0.04
67 25 0.32
68 9 0.12
69 11 0.14
70 5 0.06
71 8 0.10
72 7 0.09
73 5 0.06
ACGTcount: A:0.23, C:0.14, G:0.00, T:0.63
Consensus pattern (71 bp):
ATTTCATTTCAATTTCATTTCATTTTTTTCTCATTTCAATTTATTTATTTTTCATTTCAATCTAT
ATTCTA
Found at i:6981676 original size:32 final size:32
Alignment explanation
Indices: 6981573--6981678 Score: 110
Period size: 32 Copynumber: 3.2 Consensus size: 32
6981563 TCACATTTCA
*
6981573 TTTC-TTTTTTTTTCATTTCAATTTA-TT-TT
1 TTTCATTTTTTTCTCATTTCAATTTATTTATT
* *
6981602 TTTCATATTCATCTTTTCTCATTTCAATTTTTTTAAT
1 TTTC--ATT--T-TTTTCTCATTTCAATTTATTTATT
*
6981639 ATTCATTTTTTTCTCATTTCAATTTATTTATT
1 TTTCATTTTTTTCTCATTTCAATTTATTTATT
6981671 TTTCATTT
1 TTTCATTT
6981679 CAATTTATAT
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
29 4 0.06
32 31 0.50
33 1 0.02
34 1 0.02
35 19 0.31
36 2 0.03
37 4 0.06
ACGTcount: A:0.19, C:0.13, G:0.00, T:0.68
Consensus pattern (32 bp):
TTTCATTTTTTTCTCATTTCAATTTATTTATT
Found at i:6981713 original size:17 final size:17
Alignment explanation
Indices: 6981671--6981723 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
6981661 TTTATTTATT
*
6981671 TTTCATTTCAATTT-ATAT
1 TTTCATTTC-ATTTCA-AA
*
6981689 TTTAATTTCATTTCAAA
1 TTTCATTTCATTTCAAA
6981706 TTTCATTTCATTTCAAA
1 TTTCATTTCATTTCAAA
6981723 T
1 T
6981724 ATTTTCTTCT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 22 0.71
18 9 0.29
ACGTcount: A:0.30, C:0.13, G:0.00, T:0.57
Consensus pattern (17 bp):
TTTCATTTCATTTCAAA
Found at i:6981776 original size:31 final size:34
Alignment explanation
Indices: 6981695--6981795 Score: 102
Period size: 31 Copynumber: 3.0 Consensus size: 34
6981685 ATATTTTAAT
* *
6981695 TTCATTTCAAATTTCATTTCATTTCAAATATTTTC
1 TTCATTTTAAATTTCATTTTATTT-AAATATTTTC
*
6981730 TTCTTTAATTAAATTTCATTTTATTT-AAT-TTTTC
1 TTCATT--TTAAATTTCATTTTATTTAAATATTTTC
*
6981764 -TCATTTTAAATTTCATGTTATTTCAAA-ATTTT
1 TTCATTTTAAATTTCATTTTATTT-AAATATTTT
6981796 AAATTTCATT
Statistics
Matches: 56, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
31 17 0.30
33 10 0.18
34 5 0.09
35 8 0.14
37 16 0.29
ACGTcount: A:0.29, C:0.12, G:0.01, T:0.58
Consensus pattern (34 bp):
TTCATTTTAAATTTCATTTTATTTAAATATTTTC
Found at i:6981798 original size:25 final size:25
Alignment explanation
Indices: 6981766--6981820 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
6981756 AATTTTTCTC
*
6981766 ATTTTAAATTTCATGTT-ATTTCAAA
1 ATTTTAAATTTCAT-TTAAATTCAAA
6981791 ATTTTAAATTTCATTTAAATTCAAA
1 ATTTTAAATTTCATTTAAATTCAAA
6981816 ATTTT
1 ATTTT
6981821 TCTCATTTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 2 0.07
25 26 0.93
ACGTcount: A:0.38, C:0.07, G:0.02, T:0.53
Consensus pattern (25 bp):
ATTTTAAATTTCATTTAAATTCAAA
Found at i:6983271 original size:13 final size:13
Alignment explanation
Indices: 6983242--6983274 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
6983232 TCACTTTTTT
6983242 TTTTATTTTTCAA
1 TTTTATTTTTCAA
*
6983255 -TTTATTTTTTAA
1 TTTTATTTTTCAA
6983267 TTTTATTT
1 TTTTATTT
6983275 CATTTCACTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTATTTTTCAA
Found at i:6983659 original size:17 final size:17
Alignment explanation
Indices: 6983620--6983652 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
6983610 TTTAATTATA
*
6983620 TATTC-ATTTCAATTTC
1 TATTCAATTTAAATTTC
6983636 TATTCAATTTAAATTTC
1 TATTCAATTTAAATTTC
6983653 ATTTCAACTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.30, C:0.15, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTCAATTTAAATTTC
Found at i:6983778 original size:28 final size:28
Alignment explanation
Indices: 6983718--6983825 Score: 77
Period size: 28 Copynumber: 4.0 Consensus size: 28
6983708 TATCTTTTTT
*
6983718 AAATATAATTTAATTTCATTCCCAATTT--
1 AAATATAATTTAATTTCATT-TC-ATTTCA
* *
6983746 TAATATAATTTTATTTCATTTCATTTCA
1 AAATATAATTTAATTTCATTTCATTTCA
* *
6983774 AAATAAAATTCAATTTC-TTT--TTT--
1 AAATATAATTTAATTTCATTTCATTTCA
* *
6983797 AAATATAATTTCATTTTAATTTCATTTCA
1 AAATATAATTT-AATTTCATTTCATTTCA
6983826 TTCCTAATTT
Statistics
Matches: 61, Mismatches: 11, Indels: 15
0.70 0.13 0.17
Matches are distributed among these distances:
23 9 0.15
24 4 0.07
25 6 0.10
26 4 0.07
27 7 0.11
28 31 0.51
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.52
Consensus pattern (28 bp):
AAATATAATTTAATTTCATTTCATTTCA
Found at i:6983812 original size:23 final size:23
Alignment explanation
Indices: 6983683--6983812 Score: 59
Period size: 24 Copynumber: 5.2 Consensus size: 23
6983673 AAAAAGCTTA
* * *
6983683 ATTTCTTTTTTAAATTTTA-CTC
1 ATTTCTTTTTTAAATATAATTTC
*
6983705 ATATATCTTTTTTAAATATAATTTA
1 AT-T-TCTTTTTTAAATATAATTTC
*
6983730 ATTTCATTCCCAATTTT-AATATAATTTT
1 ATTTC-TT-----TTTTAAATATAATTTC
*
6983758 ATTTCATTTCATTTCAAA-ATAAAATTC
1 ATTTC-TTT--TTT-AAATAT-AATTTC
6983785 AATTTCTTTTTTAAATATAATTTC
1 -ATTTCTTTTTTAAATATAATTTC
6983809 ATTT
1 ATTT
6983813 TAATTTCATT
Statistics
Matches: 84, Mismatches: 8, Indels: 31
0.68 0.07 0.25
Matches are distributed among these distances:
22 2 0.02
23 8 0.10
24 25 0.30
25 11 0.13
26 2 0.02
27 9 0.11
28 23 0.27
29 4 0.05
ACGTcount: A:0.34, C:0.11, G:0.00, T:0.55
Consensus pattern (23 bp):
ATTTCTTTTTTAAATATAATTTC
Found at i:6984972 original size:25 final size:25
Alignment explanation
Indices: 6984944--6985017 Score: 96
Period size: 25 Copynumber: 3.0 Consensus size: 25
6984934 CAGACTAATA
6984944 AAATTTGAAAAGGAATTTTTGAAAT
1 AAATTTGAAAAGGAATTTTTGAAAT
** **
6984969 AAA-TACAAACAATAATTTTTGAAAT
1 AAATTTGAAA-AGGAATTTTTGAAAT
6984994 AAATTTGAAAAGGAATTTTTGAAA
1 AAATTTGAAAAGGAATTTTTGAAA
6985018 AGGATGTTTG
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
24 4 0.10
25 31 0.79
26 4 0.10
ACGTcount: A:0.51, C:0.03, G:0.12, T:0.34
Consensus pattern (25 bp):
AAATTTGAAAAGGAATTTTTGAAAT
Found at i:6987152 original size:39 final size:37
Alignment explanation
Indices: 6987085--6987177 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
6987075 ACCAGAATGG
* *
6987085 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
6987124 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
6987161 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
6987178 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:6987540 original size:3 final size:3
Alignment explanation
Indices: 6987532--6987579 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
6987522 ATTCCCACTC
* * * *
6987532 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6987580 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:6987580 original size:18 final size:18
Alignment explanation
Indices: 6987533--6987581 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
6987523 TTCCCACTCA
*
6987533 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
6987551 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
6987569 TAATATTAATACT
1 TAATAATAATACT
6987582 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:6987581 original size:12 final size:12
Alignment explanation
Indices: 6987532--6987579 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
6987522 ATTCCCACTC
*
6987532 ATAATAATAATA
1 ATAATACTAATA
6987544 ATAATACTAATA
1 ATAATACTAATA
6987556 ATAATACTAATA
1 ATAATACTAATA
* *
6987568 CTAATATTAATA
1 ATAATACTAATA
6987580 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:6988319 original size:20 final size:20
Alignment explanation
Indices: 6988285--6988324 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
6988275 TTCTATTCTG
*
6988285 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTGTTTTATTTC
6988305 TTTCTTTTTCT-TTTTATTTC
1 TTTC-TTTTCTGTTTTATTTC
6988325 CTTTTATTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTCTTTTCTGTTTTATTTC
Found at i:6988491 original size:31 final size:28
Alignment explanation
Indices: 6988455--6988522 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
6988445 TTGTCTTTAT
**
6988455 TTAATTTATTTCTTAATATAATATTTATAA
1 TTAATTTATTTAATAATAT-A-ATTTATAA
* *
6988485 TGTAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
6988514 TTAATTTAT
1 TTAATTTAT
6988523 ATATTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 8 0.25
30 2 0.06
31 15 0.47
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Found at i:6988539 original size:21 final size:20
Alignment explanation
Indices: 6988501--6988539 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
6988491 TAATTTAATA
*
6988501 ATATACTTTATAATTAATTT
1 ATATACTTTATAAATAATTT
*
6988521 ATATATTTATATAAATAAT
1 ATATACTT-TATAAATAAT
6988540 AATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATACTTTATAAATAATTT
Found at i:6993481 original size:21 final size:21
Alignment explanation
Indices: 6993439--6993481 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
6993429 TTCACTATAC
*
6993439 ATTCTTTCATCAGTATCATTT
1 ATTCTTTCATCAGCATCATTT
*
6993460 ATTCTTTCTTCAGACATC-TTT
1 ATTCTTTCATCAG-CATCATTT
6993481 A
1 A
6993482 ATCTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.23, C:0.21, G:0.05, T:0.51
Consensus pattern (21 bp):
ATTCTTTCATCAGCATCATTT
Found at i:6994594 original size:39 final size:37
Alignment explanation
Indices: 6994527--6994619 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
6994517 ACCAGAATGG
* *
6994527 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
6994566 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
6994603 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
6994620 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Found at i:6994982 original size:3 final size:3
Alignment explanation
Indices: 6994974--6995021 Score: 60
Period size: 3 Copynumber: 16.0 Consensus size: 3
6994964 ATTCCCACTC
* * * *
6994974 ATA ATA ATA ATA ATA ATA CTA ATA ATA ATA CTA ATA CTA ATA TTA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6995022 CTTACCTCAC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:6995022 original size:18 final size:18
Alignment explanation
Indices: 6994975--6995023 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
6994965 TTCCCACTCA
*
6994975 TAATAATAATAATAATAC
1 TAATAATAATACTAATAC
6994993 TAATAATAATACTAATAC
1 TAATAATAATACTAATAC
*
6995011 TAATATTAATACT
1 TAATAATAATACT
6995024 TACCTCACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (18 bp):
TAATAATAATACTAATAC
Found at i:6995023 original size:12 final size:12
Alignment explanation
Indices: 6994974--6995021 Score: 69
Period size: 12 Copynumber: 4.0 Consensus size: 12
6994964 ATTCCCACTC
*
6994974 ATAATAATAATA
1 ATAATACTAATA
6994986 ATAATACTAATA
1 ATAATACTAATA
6994998 ATAATACTAATA
1 ATAATACTAATA
* *
6995010 CTAATATTAATA
1 ATAATACTAATA
6995022 CTTACCTCAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 33 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATAATACTAATA
Found at i:6995771 original size:20 final size:20
Alignment explanation
Indices: 6995729--6995767 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
6995719 TTCTATTCTG
* *
6995729 TTTCTTTTCTGTTTTGTTTC
1 TTTCTTTTCTCTTTTATTTC
6995749 TTTCTTTT-TCTTTTATTTC
1 TTTCTTTTCTCTTTTATTTC
6995768 CTTTTATTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.03, C:0.15, G:0.05, T:0.77
Consensus pattern (20 bp):
TTTCTTTTCTCTTTTATTTC
Found at i:6995934 original size:31 final size:28
Alignment explanation
Indices: 6995898--6995965 Score: 73
Period size: 31 Copynumber: 2.3 Consensus size: 28
6995888 TTGTCTTTAT
**
6995898 TTAATTTATTTCTTAATATAATATTTATAA
1 TTAATTTATTTAATAATAT-A-ATTTATAA
* *
6995928 TGTAATTAATTTAATAATATACTTTATAA
1 T-TAATTTATTTAATAATATAATTTATAA
6995957 TTAATTTAT
1 TTAATTTAT
6995966 ATATTTATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
28 7 0.22
29 8 0.25
30 2 0.06
31 15 0.47
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.54
Consensus pattern (28 bp):
TTAATTTATTTAATAATATAATTTATAA
Found at i:6995982 original size:21 final size:20
Alignment explanation
Indices: 6995944--6995982 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
6995934 TAATTTAATA
*
6995944 ATATACTTTATAATTAATTT
1 ATATACTTTATAAATAATTT
*
6995964 ATATATTTATATAAATAAT
1 ATATACTT-TATAAATAAT
6995983 AATATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (20 bp):
ATATACTTTATAAATAATTT
Found at i:6998570 original size:21 final size:21
Alignment explanation
Indices: 6998546--6998587 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 21
6998536 AATTAAAATT
6998546 TTTACTTGTAAAATATT-TTTA
1 TTTA-TTGTAAAATATTATTTA
* *
6998567 TTTATTTTTAAATATTATTTA
1 TTTATTGTAAAATATTATTTA
6998588 AAGGAACTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (21 bp):
TTTATTGTAAAATATTATTTA
Found at i:7001720 original size:12 final size:12
Alignment explanation
Indices: 7001700--7001733 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
7001690 ATATTAAATA
*
7001700 TTAAATTTAATT
1 TTAATTTTAATT
7001712 TTAATTTTAATT
1 TTAATTTTAATT
7001724 TTAATTTTAA
1 TTAATTTTAA
7001734 AAAATAGAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
TTAATTTTAATT
Found at i:7009242 original size:50 final size:50
Alignment explanation
Indices: 7009127--7009369 Score: 396
Period size: 50 Copynumber: 4.8 Consensus size: 50
7009117 GATAATAACA
* ** * *
7009127 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * *
7009178 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
7009228 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
7009278 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
7009328 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7009370 TTACCCAAAT
Statistics
Matches: 179, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
50 146 0.82
51 33 0.18
ACGTcount: A:0.20, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:7009485 original size:13 final size:13
Alignment explanation
Indices: 7009464--7009494 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
7009454 GCTTAGATCA
*
7009464 TCATCAAATAAAT
1 TCATAAAATAAAT
7009477 TCATAAAATAAAT
1 TCATAAAATAAAT
7009490 TCATA
1 TCATA
7009495 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:7009741 original size:30 final size:30
Alignment explanation
Indices: 7009707--7009764 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
7009697 CCTCGACTCT
**
7009707 AACTTTTTTAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7009737 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7009765 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.03, T:0.43
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7011235 original size:25 final size:25
Alignment explanation
Indices: 7011206--7011259 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
7011196 TATATATAAC
7011206 ATAATATTCATCATCGACATGTATT
1 ATAATATTCATCATCGACATGTATT
7011231 ATAATATTCATCATCGACATGTATT
1 ATAATATTCATCATCGACATGTATT
7011256 ATAA
1 ATAA
7011260 AACATTTATT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.39, C:0.15, G:0.07, T:0.39
Consensus pattern (25 bp):
ATAATATTCATCATCGACATGTATT
Found at i:7016472 original size:21 final size:21
Alignment explanation
Indices: 7016434--7016474 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
7016424 CTGGTATACA
7016434 TCATTCTATTTGTCTTATTTT
1 TCATTCTATTTGTCTTATTTT
*
7016455 TCATATCTATTT-TGTTATTT
1 TCAT-TCTATTTGTCTTATTT
7016475 ATATTCAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.17, C:0.12, G:0.05, T:0.66
Consensus pattern (21 bp):
TCATTCTATTTGTCTTATTTT
Found at i:7017282 original size:22 final size:23
Alignment explanation
Indices: 7017235--7017284 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
7017225 GGCCCGAGTT
* * *
7017235 ATTAAAATTATATTTTTATTAAA
1 ATTAAAACTATATTGTTAGTAAA
7017258 ATTAAAACTA-ATTGTTAGTAAA
1 ATTAAAACTATATTGTTAGTAAA
7017280 ATTAA
1 ATTAA
7017285 TTGTTATTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
22 15 0.62
23 9 0.38
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (23 bp):
ATTAAAACTATATTGTTAGTAAA
Found at i:7017285 original size:16 final size:16
Alignment explanation
Indices: 7017260--7017299 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7017250 TTATTAAAAT
*
7017260 TAAAACTAATTGTTAG
1 TAAAATTAATTGTTAG
*
7017276 TAAAATTAATTGTTAT
1 TAAAATTAATTGTTAG
7017292 TAAAATTA
1 TAAAATTA
7017300 TATCAAATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:7017392 original size:35 final size:35
Alignment explanation
Indices: 7017353--7017505 Score: 120
Period size: 35 Copynumber: 4.5 Consensus size: 35
7017343 ATCTAACATT
7017353 TTGTTAGTAAAATTATTAATTGTTAATTGTAATAA
1 TTGTTAGTAAAATTATTAATTGTTAATTGTAATAA
* *
7017388 TTGTTAGTAAAATTATCAAATTATTAATTGT--T-A
1 TTGTTAGTAAAATTAT-TAATTGTTAATTGTAATAA
* ** * * * * * *
7017421 GTACTAGTCAAAA-CATT--TTGTAAAATCTAACATT
1 TTGTTAGT-AAAATTATTAATTGTTAATTGTAATA-A
* *
7017455 TTGTTAGTCAAATTATTAATTGTTAATTGTATTAA
1 TTGTTAGTAAAATTATTAATTGTTAATTGTAATAA
7017490 TTGTTAGTAAAATTAT
1 TTGTTAGTAAAATTAT
7017506 CAAATTATAT
Statistics
Matches: 84, Mismatches: 25, Indels: 18
0.66 0.20 0.14
Matches are distributed among these distances:
30 7 0.08
33 11 0.13
34 13 0.15
35 31 0.37
36 22 0.26
ACGTcount: A:0.39, C:0.05, G:0.10, T:0.46
Consensus pattern (35 bp):
TTGTTAGTAAAATTATTAATTGTTAATTGTAATAA
Found at i:7017454 original size:102 final size:102
Alignment explanation
Indices: 7017282--7017513 Score: 367
Period size: 102 Copynumber: 2.3 Consensus size: 102
7017272 TTAGTAAAAT
* * * *
7017282 TAATTGTTATTAAAATTATATCAAATTA-TATTTTTTTGTACCAATCAAAACATTTTGTAAAATC
1 TAATTGTTAGTAAAA-T-TATCAAATTATTAATTGTTAGTACCAATCAAAACATTTTGTAAAATC
7017346 TAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTAA
64 TAACATTTTGTTAGTAAAATTATTAATTGTTAATTGTAA
* *
7017385 TAATTGTTAGTAAAATTATCAAATTATTAATTGTTAGTACTAGTCAAAACATTTTGTAAAATCTA
1 TAATTGTTAGTAAAATTATCAAATTATTAATTGTTAGTACCAATCAAAACATTTTGTAAAATCTA
* *
7017450 ACATTTTGTTAGTCAAATTATTAATTGTTAATTGTAT
66 ACATTTTGTTAGTAAAATTATTAATTGTTAATTGTAA
7017487 TAATTGTTAGTAAAATTATCAAATTAT
1 TAATTGTTAGTAAAATTATCAAATTAT
7017514 ATCATATTAG
Statistics
Matches: 120, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
101 10 0.08
102 96 0.80
103 14 0.12
ACGTcount: A:0.40, C:0.06, G:0.08, T:0.46
Consensus pattern (102 bp):
TAATTGTTAGTAAAATTATCAAATTATTAATTGTTAGTACCAATCAAAACATTTTGTAAAATCTA
ACATTTTGTTAGTAAAATTATTAATTGTTAATTGTAA
Found at i:7017531 original size:6 final size:6
Alignment explanation
Indices: 7017520--7017551 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
7017510 TTATATCATA
*
7017520 TTAGGG TTAGGG TTAAGG TTAGGG TTAGGG TT
1 TTAGGG TTAGGG TTAGGG TTAGGG TTAGGG TT
7017552 TTTGTTAGCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.38
Consensus pattern (6 bp):
TTAGGG
Found at i:7017558 original size:18 final size:18
Alignment explanation
Indices: 7017520--7017571 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 18
7017510 TTATATCATA
**
7017520 TTAGGGTTAGGGTTAAGG
1 TTAGGGTTAGGGTTTTGG
*
7017538 TTAGGGTTAGGGTTTTTG
1 TTAGGGTTAGGGTTTTGG
**
7017556 TTAGCATTAGGGTTTT
1 TTAGGGTTAGGGTTTT
7017572 AGTGTTTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.17, C:0.02, G:0.37, T:0.44
Consensus pattern (18 bp):
TTAGGGTTAGGGTTTTGG
Found at i:7017595 original size:15 final size:15
Alignment explanation
Indices: 7017575--7017607 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
7017565 GGGTTTTAGT
7017575 GTTTTTAAGTTAAGG
1 GTTTTTAAGTTAAGG
7017590 GTTTTTAAGTTAAGG
1 GTTTTTAAGTTAAGG
7017605 GTT
1 GTT
7017608 AGGGTTATGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.48
Consensus pattern (15 bp):
GTTTTTAAGTTAAGG
Found at i:7017631 original size:33 final size:33
Alignment explanation
Indices: 7017587--7017742 Score: 131
Period size: 33 Copynumber: 4.7 Consensus size: 33
7017577 TTTTAAGTTA
* *
7017587 AGGGTTTTTAAGTTAAGGGTTAGGGTTATGGTT
1 AGGGGTTTTAAGTTAAGGGTTAGGGTTAGGGTT
* * *
7017620 AGGGGTTTTAAGTTAAGGATTAAGGTTAGGGCT
1 AGGGGTTTTAAGTTAAGGGTTAGGGTTAGGGTT
* * * *
7017653 A-AGGTTTT-TGTT-AGGGTTTTGGTGTTTTTA-AGTT
1 AGGGGTTTTAAGTTAAGGG-TTAGG-G---TTAGGGTT
*
7017687 AAGGGTTTTAAGTTAAGGGTTAGGGTTAGGGTT
1 AGGGGTTTTAAGTTAAGGGTTAGGGTTAGGGTT
**
7017720 AGGATTTTTAAGTTAAGGGTTAG
1 AGGGGTTTTAAGTTAAGGGTTAG
7017743 AGTTTTTAAG
Statistics
Matches: 95, Mismatches: 19, Indels: 18
0.72 0.14 0.14
Matches are distributed among these distances:
30 3 0.03
31 6 0.06
32 10 0.11
33 52 0.55
34 3 0.03
35 10 0.11
36 7 0.07
37 4 0.04
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.42
Consensus pattern (33 bp):
AGGGGTTTTAAGTTAAGGGTTAGGGTTAGGGTT
Found at i:7017693 original size:67 final size:67
Alignment explanation
Indices: 7017585--7017761 Score: 184
Period size: 67 Copynumber: 2.6 Consensus size: 67
7017575 GTTTTTAAGT
* * * * *
7017585 TAAGGGTTTTTAAGTTAAGGGTTAG-GGTTAT-GGTTAGGGGTTTTAAGTTAAGGATTAAGGTTA
1 TAAGGATTTTT-AGTTAAGGGTTAGAGTTTTTAAGTTAAGGGTTTTAAGTTAAGGATTAAGGTTA
7017648 GGG
65 GGG
* * * *
7017651 CTAAGG-TTTTT-GTT-AGGGTTTTGGTGTTTTTAAGTTAAGGGTTTTAAGTTAAGGGTTAGGGT
1 -TAAGGATTTTTAGTTAAGGG--TTAGAGTTTTTAAGTTAAGGGTTTTAAGTTAAGGATTAAGGT
7017713 TAGGG
63 TAGGG
*
7017718 TTAGGATTTTTAAGTTAAGGGTTAGAGTTTTTAAGTTAAGGGTT
1 TAAGGATTTTT-AGTTAAGGGTTAGAGTTTTTAAGTTAAGGGTT
7017762 AGGGTTATGG
Statistics
Matches: 92, Mismatches: 10, Indels: 15
0.79 0.09 0.13
Matches are distributed among these distances:
63 4 0.04
64 3 0.03
65 3 0.03
66 13 0.14
67 41 0.45
68 21 0.23
69 3 0.03
70 4 0.04
ACGTcount: A:0.24, C:0.01, G:0.33, T:0.42
Consensus pattern (67 bp):
TAAGGATTTTTAGTTAAGGGTTAGAGTTTTTAAGTTAAGGGTTTTAAGTTAAGGATTAAGGTTAG
GG
Found at i:7017695 original size:14 final size:14
Alignment explanation
Indices: 7017678--7017707 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
7017668 GTTTTGGTGT
7017678 TTTTAAGTTAAGGG
1 TTTTAAGTTAAGGG
7017692 TTTTAAGTTAAGGG
1 TTTTAAGTTAAGGG
7017706 TT
1 TT
7017708 AGGGTTAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.47
Consensus pattern (14 bp):
TTTTAAGTTAAGGG
Found at i:7017738 original size:21 final size:22
Alignment explanation
Indices: 7017714--7017764 Score: 88
Period size: 21 Copynumber: 2.4 Consensus size: 22
7017704 GGTTAGGGTT
7017714 AGGGTTAGGA-TTTTTAAGTTA
1 AGGGTTAGGAGTTTTTAAGTTA
7017735 AGGGTTA-GAGTTTTTAAGTTA
1 AGGGTTAGGAGTTTTTAAGTTA
7017756 AGGGTTAGG
1 AGGGTTAGG
7017765 GTTATGGTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 2 0.07
21 25 0.89
22 1 0.04
ACGTcount: A:0.27, C:0.00, G:0.33, T:0.39
Consensus pattern (22 bp):
AGGGTTAGGAGTTTTTAAGTTA
Found at i:7017738 original size:27 final size:27
Alignment explanation
Indices: 7017708--7017857 Score: 125
Period size: 33 Copynumber: 5.3 Consensus size: 27
7017698 GTTAAGGGTT
7017708 AGGGTTAGGGTTAGGATTTTTAAGTTA
1 AGGGTTAGGGTTAGGATTTTTAAGTTA
7017735 AGGGTTA--G--A-G-TTTTTAAGTTA
1 AGGGTTAGGGTTAGGATTTTTAAGTTA
*
7017756 AGGGTTAGGGTTATGGTTAGGGTTTTTATGTTA
1 AGGGTTAGGGTTA-GG--A---TTTTTAAGTTA
7017789 AGGGTTAGGGTTAGTG-TTTTTAAGTTA
1 AGGGTTAGGGTTAG-GATTTTTAAGTTA
7017816 AGGGTTAGGGTTATGGCTAGGGTTTTTAAGTTA
1 AGGGTTAGGGTTA-GG--A---TTTTTAAGTTA
7017849 AGGGTTAGG
1 AGGGTTAGG
7017858 TTATGGTTAC
Statistics
Matches: 101, Mismatches: 2, Indels: 34
0.74 0.01 0.25
Matches are distributed among these distances:
21 18 0.18
22 1 0.01
23 2 0.02
25 2 0.02
27 32 0.32
28 1 0.01
32 1 0.01
33 44 0.44
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.41
Consensus pattern (27 bp):
AGGGTTAGGGTTAGGATTTTTAAGTTA
Found at i:7017759 original size:54 final size:56
Alignment explanation
Indices: 7017692--7017856 Score: 244
Period size: 60 Copynumber: 2.9 Consensus size: 56
7017682 AAGTTAAGGG
* *
7017692 TTTTAAGTTAAGGGTTAGGGTTAGGGTTAGGATTTTTAAGTTAAGGGTTAG-A-GT
1 TTTTAAGTTAAGGGTTAGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTTAGTAGGT
*
7017746 TTTTAAGTTAAGGGTTAGGGTTATGGTTAGGGTTTTTATGTTAAGGGTTAGGGTTAGTGT
1 TTTTAAGTTAAGGGTTAGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTTA--G-TAG-GT
*
7017806 TTTTAAGTTAAGGGTTAGGGTTATGGCTAGGGTTTTTAAGTTAAGGGTTAG
1 TTTTAAGTTAAGGGTTAGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTTAG
7017857 GTTATGGTTA
Statistics
Matches: 100, Mismatches: 5, Indels: 8
0.88 0.04 0.07
Matches are distributed among these distances:
54 47 0.47
56 1 0.01
58 2 0.02
60 50 0.50
ACGTcount: A:0.23, C:0.01, G:0.34, T:0.42
Consensus pattern (56 bp):
TTTTAAGTTAAGGGTTAGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTTAGTAGGT
Found at i:7017872 original size:32 final size:32
Alignment explanation
Indices: 7017737--7017874 Score: 180
Period size: 33 Copynumber: 4.4 Consensus size: 32
7017727 TTAAGTTAAG
7017737 GGTTAGAGTTTTTAAGTTAAGGGTTAGGGTTAT
1 GGTTAG-GTTTTTAAGTTAAGGGTTAGGGTTAT
*
7017770 GGTTAGGGTTTTTATGTTAAGGGTTAGGGTTA-
1 GGTTA-GGTTTTTAAGTTAAGGGTTAGGGTTAT
7017802 -G-T--GTTTTTAAGTTAAGGGTTAGGGTTAT
1 GGTTAGGTTTTTAAGTTAAGGGTTAGGGTTAT
*
7017830 GGCTAGGGTTTTTAAGTTAAGGGTTA-GGTTAT
1 GGTTA-GGTTTTTAAGTTAAGGGTTAGGGTTAT
7017862 GGTTACGGTTTTT
1 GGTTA-GGTTTTT
7017875 GTTAGGAATT
Statistics
Matches: 94, Mismatches: 4, Indels: 15
0.83 0.04 0.13
Matches are distributed among these distances:
27 24 0.26
29 1 0.01
30 2 0.02
31 1 0.01
32 17 0.18
33 48 0.51
34 1 0.01
ACGTcount: A:0.20, C:0.01, G:0.34, T:0.44
Consensus pattern (32 bp):
GGTTAGGTTTTTAAGTTAAGGGTTAGGGTTAT
Found at i:7024805 original size:29 final size:29
Alignment explanation
Indices: 7024773--7024828 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
7024763 ATAGGGATAT
*
7024773 GATTAAATTAATCTCTCTACTATTAAATG
1 GATTAAATTAATCCCTCTACTATTAAATG
* * *
7024802 GATTAATTTAGTCCCTGTACTATTAAA
1 GATTAAATTAATCCCTCTACTATTAAA
7024829 AAAAATTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.36, C:0.14, G:0.09, T:0.41
Consensus pattern (29 bp):
GATTAAATTAATCCCTCTACTATTAAATG
Found at i:7032679 original size:16 final size:15
Alignment explanation
Indices: 7032660--7032689 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7032650 TTATATTATA
7032660 AAAATATTATTAAATT
1 AAAATATTA-TAAATT
7032676 AAAATATTATAAAT
1 AAAATATTATAAAT
7032690 ATATTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (15 bp):
AAAATATTATAAATT
Found at i:7032693 original size:27 final size:29
Alignment explanation
Indices: 7032652--7032715 Score: 87
Period size: 27 Copynumber: 2.3 Consensus size: 29
7032642 TTCTTGATTT
7032652 ATATTATAAAAATATT-ATT-AAATTAAA
1 ATATTATAAAAATATTAATTAAAATTAAA
* *
7032679 ATATTATAAATATATTAATTAAAATTAAG
1 ATATTATAAAAATATTAATTAAAATTAAA
*
7032708 ATAATATA
1 ATATTATA
7032716 TTATAGGAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
27 15 0.47
28 3 0.09
29 14 0.44
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.41
Consensus pattern (29 bp):
ATATTATAAAAATATTAATTAAAATTAAA
Found at i:7032715 original size:29 final size:27
Alignment explanation
Indices: 7032656--7032715 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 27
7032646 TGATTTATAT
*
7032656 TATAAAAATATTATTAAATTAAAATAT
1 TATAAAAATATTATTAAATTAAAATAA
* *
7032683 TATAAATATATTAATTAAAATTAAGATAA
1 TATAAAAATATT-ATT-AAATTAAAATAA
7032712 TATA
1 TATA
7032716 TTATAGGAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 11 0.39
28 3 0.11
29 14 0.50
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (27 bp):
TATAAAAATATTATTAAATTAAAATAA
Found at i:7033901 original size:23 final size:22
Alignment explanation
Indices: 7033870--7033953 Score: 102
Period size: 21 Copynumber: 3.9 Consensus size: 22
7033860 GCTTTGCCGA
*
7033870 TCAGACACTTTATGTGTCGTAT
1 TCAGGCACTTTATGTGTCGTAT
7033892 CTCAGGCACTTTATGTGTCGTA-
1 -TCAGGCACTTTATGTGTCGTAT
* **
7033914 TCAGGCACCTCGTGTGTCGT-T
1 TCAGGCACTTTATGTGTCGTAT
7033935 TCAGGCAC-TTATGTGTCGT
1 TCAGGCACTTTATGTGTCGT
7033954 TTACTGATCA
Statistics
Matches: 54, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
20 9 0.17
21 25 0.46
23 20 0.37
ACGTcount: A:0.17, C:0.23, G:0.24, T:0.37
Consensus pattern (22 bp):
TCAGGCACTTTATGTGTCGTAT
Found at i:7049203 original size:12 final size:12
Alignment explanation
Indices: 7049186--7049210 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7049176 CCTCCTAGTA
7049186 AACCACTAAACC
1 AACCACTAAACC
7049198 AACCACTAAACC
1 AACCACTAAACC
7049210 A
1 A
7049211 GTGAATTTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.40, G:0.00, T:0.08
Consensus pattern (12 bp):
AACCACTAAACC
Found at i:7057077 original size:74 final size:78
Alignment explanation
Indices: 7056955--7057098 Score: 197
Period size: 74 Copynumber: 1.9 Consensus size: 78
7056945 AGAAAACAAG
* * *
7056955 TTTTATAAGCAGAAATTATAAATTTTTACAAACAAATTAAGTTAATTTTTTA-TATA-AA-TATT
1 TTTTATAAACAAAAATTATAAATTTTCACAAACAAATTAAGTTAATTTTTTATTATATAATTATT
7057017 ATTTATCTCAAAT
66 ATTTATCTCAAAT
* * **
7057030 TTTTATAAACAAAAATTAT-TATTTTCACGAACAAATTATTTTAATTTTTTATTATATAATTATT
1 TTTTATAAACAAAAATTATAAATTTTCACAAACAAATTAAGTTAATTTTTTATTATATAATTATT
7057094 ATTTA
66 ATTTA
7057099 CCTCTCAATA
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
74 27 0.46
75 21 0.36
76 2 0.03
77 9 0.15
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.49
Consensus pattern (78 bp):
TTTTATAAACAAAAATTATAAATTTTCACAAACAAATTAAGTTAATTTTTTATTATATAATTATT
ATTTATCTCAAAT
Found at i:7057266 original size:15 final size:15
Alignment explanation
Indices: 7057248--7057278 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
7057238 TAAAAATTAT
7057248 ATAAATATATTTTAA
1 ATAAATATATTTTAA
7057263 ATAAATATATTTTAA
1 ATAAATATATTTTAA
7057278 A
1 A
7057279 ATTTAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATAAATATATTTTAA
Found at i:7057312 original size:15 final size:14
Alignment explanation
Indices: 7057244--7057312 Score: 61
Period size: 15 Copynumber: 4.8 Consensus size: 14
7057234 ATAATAAAAA
7057244 TTATATAAATATATT
1 TTATATAAATATA-T
*
7057259 TTAAATAAATATAT
1 TTATATAAATATAT
*
7057273 TT-TA-AAATTTAAT
1 TTATATAAATAT-AT
*
7057286 TAAATATAAATATAT
1 T-TATATAAATATAT
7057301 TTATATTAAATA
1 TTATA-TAAATA
7057313 CAAAAATAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
12 5 0.12
13 4 0.09
14 6 0.14
15 23 0.53
16 5 0.12
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (14 bp):
TTATATAAATATAT
Found at i:7058607 original size:48 final size:45
Alignment explanation
Indices: 7058536--7058628 Score: 134
Period size: 48 Copynumber: 2.0 Consensus size: 45
7058526 GATAGCCTCG
*
7058536 TAAATCTTAGTTTGGCTTTCACTATTCAAAAGGTATTGTGGTGGTTCA
1 TAAATCTTAGTTTGACTTTCACTATTCAAAA---ATTGTGGTGGTTCA
7058584 TAAATCTT-GATTTGACTTTCACTATTCAAAAATTGTGGTGGTTCA
1 TAAATCTTAG-TTTGACTTTCACTATTCAAAAATTGTGGTGGTTCA
7058629 AAAGGTTCTT
Statistics
Matches: 43, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
45 14 0.33
47 1 0.02
48 28 0.65
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (45 bp):
TAAATCTTAGTTTGACTTTCACTATTCAAAAATTGTGGTGGTTCA
Found at i:7058809 original size:21 final size:21
Alignment explanation
Indices: 7058785--7058824 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7058775 TCAACAATTT
*
7058785 AATATTGATATTAAAATTAAA
1 AATATTAATATTAAAATTAAA
*
7058806 AATATTAATATTATAATTA
1 AATATTAATATTAAAATTA
7058825 CAAAGAATGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (21 bp):
AATATTAATATTAAAATTAAA
Found at i:7061364 original size:87 final size:87
Alignment explanation
Indices: 7061218--7061611 Score: 386
Period size: 87 Copynumber: 4.6 Consensus size: 87
7061208 CGCTTTCTCT
* *
7061218 TGCCAGTAATCAGGA-TATCAGTTTCCAATACTTTGATCTCCCTCATTGCTGATAGATCCATCTT
1 TGCCAGTAATC-GGAGTATCAGTTTCCAATACTTCGATCTCCCTCATTGCTGATATATCCATCTT
7061282 -TCCAGTGACACAAAGGTTATCAG
65 AT-CAGTGACACAAAGGTTATCAG
*
7061305 TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCAATCTCCCTCATTGCTGATATATCCATCTTA
1 TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCGATCTCCCTCATTGCTGATATATCCATCTTA
*
7061370 TCAGTGACACAAAGGTTATCTG
66 TCAGTGACACAAAGGTTATCAG
* * * *
7061392 TGCCAGTAATCAGAGCATCAGTTTCCCATTCTTCGATCTGCCC-CA---CTG-------C-T-TT
1 TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCGATCT-CCCTCATTGCTGATATATCCATCTT
*
7061444 ATCAGTGACACAAAGATTATCAG
65 ATCAGTGACACAAAGGTTATCAG
* * * * * *
7061467 TGCCAGTAATTGGGGCATAAGTTTCTAATACTTTGATCTCCCTCATTGCTGATAGATCCAGATCC
1 TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCGATCTCCCTCATTGCTGAT--AT----ATCC
* * *
7061532 ATCTTATCAGTGACATAAAGGTCACCAG
60 ATCTTATCAGTGACACAAAGGTTATCAG
* * * * * *
7061560 TGCCAGCAACCGGAGTATCACTTTCCAATCCTTCGATCTCCATCACTGCTGA
1 TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCGATCTCCCTCATTGCTGA
7061612 GAGATCCTTA
Statistics
Matches: 250, Mismatches: 35, Indels: 38
0.77 0.11 0.12
Matches are distributed among these distances:
74 3 0.01
75 56 0.22
76 1 0.00
77 1 0.00
78 3 0.01
84 3 0.01
86 3 0.01
87 113 0.45
88 4 0.02
91 1 0.00
92 1 0.00
93 61 0.24
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (87 bp):
TGCCAGTAATCGGAGTATCAGTTTCCAATACTTCGATCTCCCTCATTGCTGATATATCCATCTTA
TCAGTGACACAAAGGTTATCAG
Found at i:7061505 original size:75 final size:75
Alignment explanation
Indices: 7061367--7061505 Score: 188
Period size: 75 Copynumber: 1.9 Consensus size: 75
7061357 TATATCCATC
* * * * *
7061367 TTATCAGTGACACAAAGGTTATCTGTGCCAGTAATCAGAGCATCAGTTTCCCATTCTTCGATCTG
1 TTATCAGTGACACAAAGATTATCAGTGCCAGTAATCAGAGCATAAGTTTCCAATACTTCGATCTG
7061432 CCCCACTGCT
66 CCCCACTGCT
** * * *
7061442 TTATCAGTGACACAAAGATTATCAGTGCCAGTAATTGGGGCATAAGTTTCTAATACTTTGATCT
1 TTATCAGTGACACAAAGATTATCAGTGCCAGTAATCAGAGCATAAGTTTCCAATACTTCGATCT
7061506 CCCTCATTGC
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
75 54 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (75 bp):
TTATCAGTGACACAAAGATTATCAGTGCCAGTAATCAGAGCATAAGTTTCCAATACTTCGATCTG
CCCCACTGCT
Found at i:7062404 original size:39 final size:39
Alignment explanation
Indices: 7062361--7062445 Score: 136
Period size: 39 Copynumber: 2.2 Consensus size: 39
7062351 TTCGCAGCTA
7062361 CAAGCTTTGGTTTCTTTT-CCTTGACTAGCTTTGGAGTTG
1 CAAGCTTTGGTTTCTTTTCCCTT-ACTAGCTTTGGAGTTG
* *
7062400 CAAGCCTTGGTTTCTTTTCCCTTACTTGCTTTGGAGTTG
1 CAAGCTTTGGTTTCTTTTCCCTTACTAGCTTTGGAGTTG
7062439 CAAGCTT
1 CAAGCTT
7062446 CAGTGTGTTT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
39 38 0.90
40 4 0.10
ACGTcount: A:0.13, C:0.21, G:0.21, T:0.45
Consensus pattern (39 bp):
CAAGCTTTGGTTTCTTTTCCCTTACTAGCTTTGGAGTTG
Found at i:7063229 original size:213 final size:213
Alignment explanation
Indices: 7062970--7063406 Score: 775
Period size: 213 Copynumber: 2.0 Consensus size: 213
7062960 CCCATTGAAA
7062970 CCATCTTCTTTTTGCTTGCTTGTGACGGTGCAGACTGTGGACTCCAAGCATAAGTCTTCGATTCC
1 CCAT-TTCTTTTTGCTTGCTTGTGACGGTGCAGACTGTGGACTCCAAGCATAAGTCTTCGATTCC
* * *
7063035 ATCAAAATTTCTGCCTGGACAAAAATTCTGTTCCTTGCCTTCACCAGCACTCAATAAATCCGCCG
65 ATCAAAATTTCTGCCTGGACAAAAATTCTGTTCCTTGCCTTCACCAGCACTCAACAAATCCCCCA
7063100 TGCCTAGAGAATCCAAGCTCATCTTCAAATCTAATTTGCCTACAAATCCCAAACTTATGCACTCT
130 TGCCTAGAGAATCCAAGCTCATCTTCAAATCTAATTTGCCTACAAATCCCAAACTTATGCACTCT
*
7063165 GTTCTGTTGGAACTTTGCT
195 GCTCTGTTGGAACTTTGCT
7063184 CCATTTCTTTTTGCTTGCTTGTGACGGTGCAGACTGTGGACTCCAAGCATAAGTCTTCGATTCCA
1 CCATTTCTTTTTGCTTGCTTGTGACGGTGCAGACTGTGGACTCCAAGCATAAGTCTTCGATTCCA
*
7063249 TCAAAATTTCTGCCTGGACAAAAATTCTGTTCCTTGCTTTCACCAGCACTCAACAAATCCCCCAT
66 TCAAAATTTCTGCCTGGACAAAAATTCTGTTCCTTGCCTTCACCAGCACTCAACAAATCCCCCAT
* ** *
7063314 GCCTAGAGAATCCAAGCTCATCTTCAAATCTATTTTGCCTACCGATCCCAAACTTATGCTCTCTG
131 GCCTAGAGAATCCAAGCTCATCTTCAAATCTAATTTGCCTACAAATCCCAAACTTATGCACTCTG
7063379 CTCTGTTGGAACTTTGCT
196 CTCTGTTGGAACTTTGCT
*
7063397 CCTTTTCTTT
1 CCATTTCTTT
7063407 GTCTGACAAT
Statistics
Matches: 213, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
213 209 0.98
214 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.15, T:0.33
Consensus pattern (213 bp):
CCATTTCTTTTTGCTTGCTTGTGACGGTGCAGACTGTGGACTCCAAGCATAAGTCTTCGATTCCA
TCAAAATTTCTGCCTGGACAAAAATTCTGTTCCTTGCCTTCACCAGCACTCAACAAATCCCCCAT
GCCTAGAGAATCCAAGCTCATCTTCAAATCTAATTTGCCTACAAATCCCAAACTTATGCACTCTG
CTCTGTTGGAACTTTGCT
Found at i:7069026 original size:16 final size:16
Alignment explanation
Indices: 7069005--7069036 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
7068995 TTGTAATTTC
7069005 AATAATGATTCGGTTT
1 AATAATGATTCGGTTT
7069021 AATAATGATTCGGTTT
1 AATAATGATTCGGTTT
7069037 TAAAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (16 bp):
AATAATGATTCGGTTT
Found at i:7072846 original size:24 final size:24
Alignment explanation
Indices: 7072819--7072867 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
7072809 GCAGCTTCAG
*
7072819 CAGGTCTCTTCTTGCTTGACTCGA
1 CAGGTATCTTCTTGCTTGACTCGA
7072843 CAGGTATCTTCTTGCTTGACTCGA
1 CAGGTATCTTCTTGCTTGACTCGA
7072867 C
1 C
7072868 CTAGAAGCCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.14, C:0.29, G:0.20, T:0.37
Consensus pattern (24 bp):
CAGGTATCTTCTTGCTTGACTCGA
Found at i:7073135 original size:18 final size:18
Alignment explanation
Indices: 7073103--7073149 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
7073093 TGAAAAGAAA
* *
7073103 CCTCGTCAGACTCATCAT
1 CCTCATCAGAATCATCAT
* *
7073121 CGTCATCAGAATCATCTT
1 CCTCATCAGAATCATCAT
7073139 CCTCATCAGAA
1 CCTCATCAGAA
7073150 CCACTCTCAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.28, C:0.34, G:0.11, T:0.28
Consensus pattern (18 bp):
CCTCATCAGAATCATCAT
Found at i:7073402 original size:3 final size:3
Alignment explanation
Indices: 7073394--7073419 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
7073384 ACCATTTACT
7073394 GCA GCA GCA GCA GCA GCA GCA GCA GC
1 GCA GCA GCA GCA GCA GCA GCA GCA GC
7073420 GACAGGAAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.35, G:0.35, T:0.00
Consensus pattern (3 bp):
GCA
Found at i:7076397 original size:2 final size:2
Alignment explanation
Indices: 7076390--7076423 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
7076380 AGCAACATTG
7076390 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7076424 GTGTGTGAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7082566 original size:2 final size:2
Alignment explanation
Indices: 7082559--7082599 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
7082549 TTTTACAAAT
7082559 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7082600 TTTGGTAGGT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Done.