Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 161 of 199
Found at i:52825276 original size:17 final size:17
Alignment explanation
Indices: 52825256--52825580 Score: 105
Period size: 17 Copynumber: 18.8 Consensus size: 17
52825246 TAAAAAAATC
52825256 CGTGTTTCAAAAATTCT
1 CGTGTTTCAAAAATTCT
** * *
52825273 CGTGAATAAAAAAATCAT
1 CGTGTTTCAAAAATTC-T
*
52825291 -GT-TTTCAAAAATTCC
1 CGTGTTTCAAAAATTCT
* *
52825306 CGTGTTTTAAAAAAATCGT
1 CGTG-TTTCAAAAATTC-T
* *
52825325 -GTTTTTAAAAAAATTCT
1 CGTGTTT-CAAAAATTCT
*
52825342 CGTGTTTCAAAAATTTT
1 CGTGTTTCAAAAATTCT
* *
52825359 CGTGTTTTCAAAATTTTT
1 CGTG-TTTCAAAAATTCT
***
52825377 CGTGTCAAAAAAATTCT
1 CGTGTTTCAAAAATTCT
* * *
52825394 CCTGTATCGAAAATT-T
1 CGTGTTTCAAAAATTCT
* * * *
52825410 CCTTATTTTCAAAATTTTT
1 -CGT-GTTTCAAAAATTCT
* *
52825429 CGTGTTTTCAAAAAATAT
1 CGTG-TTTCAAAAATTCT
* *
52825447 TGTGTTTCGAAAA-TCTT
1 CGTGTTTCAAAAATTC-T
* *
52825464 CGTGTTTTTAAAAATTTT
1 CGTG-TTTCAAAAATTCT
*
52825482 GGTGTTTCAAAAATT-T
1 CGTGTTTCAAAAATTCT
*
52825498 CCGCGTTTCTAAAAATTC-
1 -CGTGTTTC-AAAAATTCT
*
52825516 AGATGATTT-AAAAA-TCTT
1 CG-TG-TTTCAAAAATTC-T
52825534 CGTGCTTTCAAAAACTTC-
1 CGTG-TTTCAAAAA-TTCT
* * *
52825552 GGTGTTTC-TAAATTTT
1 CGTGTTTCAAAAATTCT
*
52825568 CATGTTTCAAAAA
1 CGTGTTTCAAAAA
52825581 AAAATCCTCG
Statistics
Matches: 222, Mismatches: 59, Indels: 54
0.66 0.18 0.16
Matches are distributed among these distances:
15 2 0.01
16 24 0.11
17 96 0.43
18 93 0.42
19 5 0.02
20 2 0.01
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.42
Consensus pattern (17 bp):
CGTGTTTCAAAAATTCT
Found at i:52825283 original size:33 final size:33
Alignment explanation
Indices: 52825246--52825328 Score: 105
Period size: 33 Copynumber: 2.5 Consensus size: 33
52825236 TTCTTTCTTT
*
52825246 TAAAAAAATCCGTGTTTCAAAAATTCTCGTG-AA
1 TAAAAAAAT-CGTGTTTCAAAAATTCCCGTGTAA
* **
52825279 TAAAAAAATCATGTTTTCAAAAATTCCCGTGTTT
1 TAAAAAAATCGTG-TTTCAAAAATTCCCGTGTAA
52825313 TAAAAAAATCGTGTTT
1 TAAAAAAATCGTGTTT
52825329 TTAAAAAAAT
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
32 3 0.07
33 28 0.65
34 12 0.28
ACGTcount: A:0.41, C:0.13, G:0.11, T:0.35
Consensus pattern (33 bp):
TAAAAAAATCGTGTTTCAAAAATTCCCGTGTAA
Found at i:52825300 original size:16 final size:16
Alignment explanation
Indices: 52825279--52825338 Score: 66
Period size: 18 Copynumber: 3.6 Consensus size: 16
52825269 TTCTCGTGAA
*
52825279 TAAAAAAATCATGTTT
1 TAAAAAAATCGTGTTT
* *
52825295 TCAAAAATTCCCGTGTTT
1 TAAAAAAAT--CGTGTTT
52825313 TAAAAAAATCGTGTTTT
1 TAAAAAAATCGTG-TTT
52825330 TAAAAAAAT
1 TAAAAAAAT
52825339 TCTCGTGTTT
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
16 11 0.31
17 12 0.33
18 13 0.36
ACGTcount: A:0.45, C:0.10, G:0.08, T:0.37
Consensus pattern (16 bp):
TAAAAAAATCGTGTTT
Found at i:52825380 original size:35 final size:35
Alignment explanation
Indices: 52825321--52825581 Score: 133
Period size: 35 Copynumber: 7.5 Consensus size: 35
52825311 TTTAAAAAAA
* *
52825321 TCGTGTTTTTAAAAAAATTCTCGTGTTTCAAAAATTT
1 TCGTG-TTTTCAAAAAATT-TTGTGTTTCAAAAATTT
* *** *
52825358 TCGTGTTTTC-AAAATTTTTCGTGTCAAAAAAATTC
1 TCGTGTTTTCAAAAAATTTT-GTGTTTCAAAAATTT
* * * * * *
52825393 TCCTG-TATCGAAAATTTCCTTAT-TTTCAAAATTTT
1 TCGTGTTTTCAAAAAATT--TTGTGTTTCAAAAATTT
* * *
52825428 TCGTGTTTTCAAAAAATATTGTGTTTCGAAAATCT
1 TCGTGTTTTCAAAAAATTTTGTGTTTCAAAAATTT
*
52825463 TCGTGTTTT-TAAAAATTTTGGTGTTTCAAAAATTT
1 TCGTGTTTTCAAAAAATTTT-GTGTTTCAAAAATTT
* * * ** *
52825498 CCGCG-TTTCTAAAAATTCAGATGATTT-AAAAATCT
1 TCGTGTTTTCAAAAAATTTTG-TG-TTTCAAAAATTT
* * ** *
52825533 TCGTGCTTTCAAAAACTTCGGTGTTTC-TAAATTT
1 TCGTGTTTTCAAAAAATTTTGTGTTTCAAAAATTT
*
52825567 TCATG-TTTCAAAAAA
1 TCGTGTTTTCAAAAAA
52825582 AAATCCTCGT
Statistics
Matches: 170, Mismatches: 42, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
33 9 0.05
34 31 0.18
35 95 0.56
36 28 0.16
37 7 0.04
ACGTcount: A:0.31, C:0.13, G:0.11, T:0.44
Consensus pattern (35 bp):
TCGTGTTTTCAAAAAATTTTGTGTTTCAAAAATTT
Found at i:52825409 original size:52 final size:52
Alignment explanation
Indices: 52825331--52825433 Score: 152
Period size: 52 Copynumber: 2.0 Consensus size: 52
52825321 TCGTGTTTTT
* * * *
52825331 AAAAAAATTCTCGTGTTTCAAAAATTTTCGTGTTTTCAAAATTTTTCGTGTC
1 AAAAAAATTCTCCTGTATCAAAAATTTCCGTATTTTCAAAATTTTTCGTGTC
* *
52825383 AAAAAAATTCTCCTGTATCGAAAATTTCCTTATTTTCAAAATTTTTCGTGT
1 AAAAAAATTCTCCTGTATCAAAAATTTCCGTATTTTCAAAATTTTTCGTGT
52825434 TTTCAAAAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.44
Consensus pattern (52 bp):
AAAAAAATTCTCCTGTATCAAAAATTTCCGTATTTTCAAAATTTTTCGTGTC
Found at i:52825490 original size:70 final size:69
Alignment explanation
Indices: 52825416--52825581 Score: 167
Period size: 70 Copynumber: 2.4 Consensus size: 69
52825406 ATTTCCTTAT
* * * *
52825416 TTTCAAAATTTTTCGTGTTTTCAAAAAATAT-TG-TG-TTTCGAAAATCTTCGTGTTTTTAAAAA
1 TTTCAAAA-TTTTCGTG-TTTCAAAAAAT-TCAGATGATTT-AAAAATCTTCGTGCTTTCAAAAA
* *
52825478 TTTTGGTG
62 CTTCGGTG
* * *
52825486 TTTCAAAAATTTCCGCGTTTCTAAAAATTCAGATGATTTAAAAATCTTCGTGCTTTCAAAAACTT
1 TTTC-AAAATTTTCGTGTTTCAAAAAATTCAGATGATTTAAAAATCTTCGTGCTTTCAAAAACTT
52825551 CGGTG
65 CGGTG
* *
52825556 TTTCTAAATTTTCATGTTTCAAAAAA
1 TTTCAAAATTTTCGTGTTTCAAAAAA
52825582 AAATCCTCGT
Statistics
Matches: 78, Mismatches: 14, Indels: 9
0.77 0.14 0.09
Matches are distributed among these distances:
68 1 0.01
69 28 0.36
70 42 0.54
71 7 0.09
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (69 bp):
TTTCAAAATTTTCGTGTTTCAAAAAATTCAGATGATTTAAAAATCTTCGTGCTTTCAAAAACTTC
GGTG
Found at i:52825745 original size:21 final size:23
Alignment explanation
Indices: 52825711--52825752 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
52825701 CTCGTGTTTT
*
52825711 AAATTCTTCGTGTTTTTAAAAAA
1 AAATTCTTCGTGTTTCTAAAAAA
52825734 AAATT-TT-GTGTTTCTAAAA
1 AAATTCTTCGTGTTTCTAAAA
52825753 TTCTTGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 2 0.11
23 5 0.28
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (23 bp):
AAATTCTTCGTGTTTCTAAAAAA
Found at i:52825754 original size:16 final size:15
Alignment explanation
Indices: 52825733--52825785 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 15
52825723 TTTTTAAAAA
52825733 AAAATTTTGTGTTTCT
1 AAAATTTTGTGTTT-T
*
52825749 AAAATTCTTGTATTTT
1 AAAATT-TTGTGTTTT
52825765 AAAATTTTCGTGTTTT
1 AAAATTTT-GTGTTTT
52825781 CAAAA
1 -AAAA
52825786 AAAGAAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 2 0.06
16 19 0.59
17 11 0.34
ACGTcount: A:0.32, C:0.08, G:0.09, T:0.51
Consensus pattern (15 bp):
AAAATTTTGTGTTTT
Found at i:52825765 original size:37 final size:37
Alignment explanation
Indices: 52825694--52825768 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
52825684 AAATAAAAAT
*
52825694 AAAAAATCTCGTGTTTTAAATTCTTCGTGTTTTTAAA
1 AAAAAATCTCGTGTTTTAAATTCTTCGTGATTTTAAA
* *
52825731 AAAAAATTTTGTGTTTCTAAAATTCTT-GT-ATTTTAAA
1 AAAAAATCTCGTGTTT-T-AAATTCTTCGTGATTTTAAA
52825768 A
1 A
52825769 TTTTCGTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 22 0.67
38 3 0.09
39 8 0.24
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.47
Consensus pattern (37 bp):
AAAAAATCTCGTGTTTTAAATTCTTCGTGATTTTAAA
Found at i:52837712 original size:54 final size:54
Alignment explanation
Indices: 52837648--52837853 Score: 160
Period size: 54 Copynumber: 3.5 Consensus size: 54
52837638 TTTTAAATTG
52837648 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
* ***** ***
52837702 ACTCATATTGCGAGAAATGAGTTGAGCCTCAGGGCACGCCGAGGTATTTTTAGTTTATGTTTTAA
1 ACTCATATTGCGAG--A-G-G-TGAG--TTA----A-GCCTTTTAATTTTT-GTTT-T-TCAAAA
**
52837767 ATTG
51 ATCA
52837771 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
1 ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
* *
52837825 ACTCATATTGCAAGAGGTGAGTTGAGCCT
1 ACTCATATTGCGAGAGGTGAGTTAAGCCT
52837854 CGGCTCACAT
Statistics
Matches: 113, Mismatches: 24, Indels: 30
0.68 0.14 0.18
Matches are distributed among these distances:
54 46 0.41
55 1 0.01
56 5 0.04
57 10 0.09
58 2 0.02
59 4 0.04
61 2 0.02
62 2 0.02
64 4 0.04
65 2 0.02
66 10 0.09
67 5 0.04
68 1 0.01
69 19 0.17
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.37
Consensus pattern (54 bp):
ACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAAATCA
Found at i:52837784 original size:123 final size:122
Alignment explanation
Indices: 52837565--52837889 Score: 533
Period size: 123 Copynumber: 2.6 Consensus size: 122
52837555 TTTTTAAATT
*
52837565 TTTTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGAGGTATTTTT
52837630 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
65 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
*
52837688 TTTTTCAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGGCACGCCGAGGTATTTTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGAGGTATTTTT
52837753 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
65 AGTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
* * * *
52837811 TTTTTCAAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTATTT
1 TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG-GCAC--GCCGAGGTATTT
* *
52837876 TCAATTTATGTTTT
63 TTAGTTTATGTTTT
52837890 TTTTCAATCT
Statistics
Matches: 189, Mismatches: 10, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
122 2 0.01
123 164 0.87
125 23 0.12
ACGTcount: A:0.27, C:0.14, G:0.21, T:0.38
Consensus pattern (122 bp):
TTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTA
GTTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTG
Found at i:52837895 original size:17 final size:18
Alignment explanation
Indices: 52837873--52837907 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
52837863 TGCTGAGGTA
*
52837873 TTTTCAATTTATG-TTTT
1 TTTTCAATCTATGCTTTT
52837890 TTTTCAATCTATGCTTTT
1 TTTTCAATCTATGCTTTT
52837908 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.17, C:0.11, G:0.06, T:0.66
Consensus pattern (18 bp):
TTTTCAATCTATGCTTTT
Found at i:52838058 original size:73 final size:73
Alignment explanation
Indices: 52837890--52838669 Score: 1262
Period size: 73 Copynumber: 10.7 Consensus size: 73
52837880 TTTATGTTTT
* * * * ** *
52837890 TTTTCAATCTATGCTTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
52837955 TTGAGGTAA
66 TTGAGGT-A
* *
52837964 TTTTCAATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
52838029 TTGAGGTA
66 TTGAGGTA
*
52838037 TTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
52838102 TTGAGGTA
66 TTGAGGTA
* * * *
52838110 ATTTCAATTTTTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACATG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
52838174 CTGAGGTA
66 TTGAGGTA
* * *
52838182 ATTTCAATTTCTG-TTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
52838246 TTGAGGTA
66 TTGAGGTA
*
52838254 TTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
52838319 TTGAGGTA
66 TTGAGGTA
* *
52838327 ATTTCAATTTCTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACA
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
52838391 TTGAGGTA
66 TTGAGGTA
*
52838399 TTTTCAATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
52838464 TTGAGGTA
66 TTGAGGTA
* *
52838472 ATTTCAATTTCTG-TTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
*
52838536 TTGAAGTA
66 TTGAGGTA
52838544 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
52838609 TTGAGGTA
66 TTGAGGTA
* * **
52838617 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
52838670 ACTTTTAATT
Statistics
Matches: 660, Mismatches: 43, Indels: 7
0.93 0.06 0.01
Matches are distributed among these distances:
72 271 0.41
73 326 0.49
74 63 0.10
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (73 bp):
TTTTCAATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACG
TTGAGGTA
Found at i:52838272 original size:145 final size:145
Alignment explanation
Indices: 52837904--52838669 Score: 1282
Period size: 145 Copynumber: 5.3 Consensus size: 145
52837894 CAATCTATGC
* * ** *
52837904 TTTTCAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCAAGGCACGTTGAGGTAATTTTC
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGT-ATTTTC
* * *
52837969 AATTTCTGCTTCTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAG
65 AATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
* *
52838034 GTATTTTCAATTTTTG
130 GTAATTTCAATTTCTG
*
52838050 CTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTC
1 -TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTC
* * *
52838115 AATTTTTG-TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGACATGCTGAG
65 AATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAG
52838179 GTAATTTCAATTTCTG
130 GTAATTTCAATTTCTG
* *
52838195 TTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
52838260 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
66 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
52838325 TAATTTCAATTTCTG
131 TAATTTCAATTTCTG
*
52838340 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACATTGAGGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
52838405 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
66 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
52838470 TAATTTCAATTTCTG
131 TAATTTCAATTTCTG
* *
52838485 TTTTCAAAATTTAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAAGTATTTTCA
1 TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
*
52838550 ATTTCTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
66 ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
*
52838615 TATTTTCAATTTCTG
131 TAATTTCAATTTCTG
* **
52838630 TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG
1 -TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAG
52838670 ACTTTTAATT
Statistics
Matches: 587, Mismatches: 30, Indels: 5
0.94 0.05 0.01
Matches are distributed among these distances:
144 69 0.12
145 418 0.71
146 47 0.08
147 53 0.09
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.34
Consensus pattern (145 bp):
TTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTCA
ATTTTTGCTTTTCAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
TAATTTCAATTTCTG
Found at i:52838692 original size:54 final size:54
Alignment explanation
Indices: 52838617--52839049 Score: 678
Period size: 54 Copynumber: 8.0 Consensus size: 54
52838607 CGTTGAGGTA
*
52838617 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGAC
1 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* *
52838672 TTTTAATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
52838726 --TT--TTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
*
52838776 TTTTAATTTCTGATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
52838830 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
52838884 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
1 TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * *
52838938 TTTTTAATTTCTATTTTTCAAAAGTCAACTCATATTGCGAGAGGTAAGTCGAGCC
1 -TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * * * *
52838993 TTTAGCAAATTCTG-TTTTCAAAAATTAACTCATATTGCGAGAAGTGAGTTAAGCC
1 TTT--TAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
52839048 TT
1 TT
52839050 GGCTCACGTG
Statistics
Matches: 351, Mismatches: 20, Indels: 14
0.91 0.05 0.04
Matches are distributed among these distances:
50 46 0.13
52 4 0.01
54 204 0.58
55 91 0.26
56 6 0.02
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (54 bp):
TTTTAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
Found at i:52838868 original size:212 final size:215
Alignment explanation
Indices: 52838617--52839049 Score: 685
Period size: 212 Copynumber: 2.0 Consensus size: 215
52838607 CGTTGAGGTA
52838617 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGACTTTTAATTTC
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGACTTTTAATTTC
*
52838682 TATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC-TT-TTTCTGTTTTTCAAAAA
66 TATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTATTTCTATTTTTCAAAAA
* * * *
52838745 TCAACTCATATTGCGAGAGGTGAGTTGAGCCTTT-TAATTTCTGATTTTCAAAAATCAACTCATA
131 TCAACTCATATTGCGAGAGGTAAGTCGAGCCTTTACAAATTCTG-TTTTCAAAAATCAACTCATA
* *
52838809 TTGCGAGAGGTGAGTTGAGCC
195 TTGCGAGAAGTGAGTTAAGCC
*
52838830 TTTT-AATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTAATTTC
1 TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGACTTTTAATTTC
* *
52838894 TGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTTTAATTTCTATTTTTCAA
66 TATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCC--TTT-ATTTCTATTTTTCAA
* *
52838959 AAGTCAACTCATATTGCGAGAGGTAAGTCGAGCCTTTAGCAAATTCTGTTTTCAAAAATTAACTC
128 AAATCAACTCATATTGCGAGAGGTAAGTCGAGCCTTTA-CAAATTCTGTTTTCAAAAATCAACTC
52839024 ATATTGCGAGAAGTGAGTTAAGCC
192 ATATTGCGAGAAGTGAGTTAAGCC
52839048 TT
1 TT
52839050 GGCTCACGTG
Statistics
Matches: 201, Mismatches: 12, Indels: 9
0.91 0.05 0.04
Matches are distributed among these distances:
212 101 0.50
213 4 0.02
215 2 0.01
217 47 0.23
218 40 0.20
219 7 0.03
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (215 bp):
TTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGACTTTTAATTTC
TATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGCCTTTATTTCTATTTTTCAAAAA
TCAACTCATATTGCGAGAGGTAAGTCGAGCCTTTACAAATTCTGTTTTCAAAAATCAACTCATAT
TGCGAGAAGTGAGTTAAGCC
Found at i:52839083 original size:13 final size:13
Alignment explanation
Indices: 52839065--52839100 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
52839055 ACGTGCTGAG
*
52839065 CTATTTTTAATTT
1 CTATTTTTAATGT
52839078 CTATTTTTAATGT
1 CTATTTTTAATGT
*
52839091 CTAGTTTTAA
1 CTATTTTTAA
52839101 AGAGTCAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.08, G:0.06, T:0.61
Consensus pattern (13 bp):
CTATTTTTAATGT
Found at i:52839316 original size:14 final size:15
Alignment explanation
Indices: 52839291--52839325 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
52839281 TTTAATTTTC
52839291 AAAATTTCAAAAAAA
1 AAAATTTCAAAAAAA
*
52839306 AAAATTT-AAAAATA
1 AAAATTTCAAAAAAA
52839320 AAAATT
1 AAAATT
52839326 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTCAAAAAAA
Found at i:52839384 original size:30 final size:30
Alignment explanation
Indices: 52839321--52839391 Score: 90
Period size: 30 Copynumber: 2.4 Consensus size: 30
52839311 TTAAAAATAA
* *
52839321 AAATTGCATTTTGACCCCTAAACTTTTCCT
1 AAATTTCATTTAGACCCCTAAACTTTTCCT
* *
52839351 AAATTTCATTTAGACCCTTAAAC-TTTCATT
1 AAATTTCATTTAGACCCCTAAACTTTTC-CT
52839381 AAATTTCATTT
1 AAATTTCATTT
52839392 TAATCCTAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
29 4 0.11
30 32 0.89
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.44
Consensus pattern (30 bp):
AAATTTCATTTAGACCCCTAAACTTTTCCT
Found at i:52839781 original size:18 final size:18
Alignment explanation
Indices: 52839758--52839795 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
52839748 ACCATCACCT
*
52839758 AAAACACCCCCACAATCA
1 AAAACACCCACACAATCA
52839776 AAAACACCCACACAATCA
1 AAAACACCCACACAATCA
52839794 AA
1 AA
52839796 TAAAATAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.39, G:0.00, T:0.05
Consensus pattern (18 bp):
AAAACACCCACACAATCA
Found at i:52839845 original size:27 final size:27
Alignment explanation
Indices: 52839815--52839866 Score: 88
Period size: 27 Copynumber: 1.9 Consensus size: 27
52839805 AACAACAGGC
52839815 AGAGAGAAGAAAAAG-AGAAAGAAGAAA
1 AGAG-GAAGAAAAAGAAGAAAGAAGAAA
52839842 AGAGGAAGAAAAAGAAGAAAGAAGA
1 AGAGGAAGAAAAAGAAGAAAGAAGA
52839867 GGAAGAAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 10 0.42
27 14 0.58
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (27 bp):
AGAGGAAGAAAAAGAAGAAAGAAGAAA
Found at i:52839850 original size:20 final size:22
Alignment explanation
Indices: 52839827--52839873 Score: 71
Period size: 20 Copynumber: 2.2 Consensus size: 22
52839817 AGAGAAGAAA
*
52839827 AAGAGAAAGAAG-AA-AAGAGG
1 AAGAAAAAGAAGAAAGAAGAGG
52839847 AAGAAAAAGAAGAAAGAAGAGG
1 AAGAAAAAGAAGAAAGAAGAGG
52839869 AAGAA
1 AAGAA
52839874 GAGAGGAGTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 11 0.46
21 2 0.08
22 11 0.46
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (22 bp):
AAGAAAAAGAAGAAAGAAGAGG
Found at i:52839983 original size:16 final size:16
Alignment explanation
Indices: 52839962--52839993 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
52839952 GAGATTTTTG
*
52839962 AAAAAAACAAAGCAAA
1 AAAAAAACAAAACAAA
52839978 AAAAAAACAAAACAAA
1 AAAAAAACAAAACAAA
52839994 GCAGAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.84, C:0.12, G:0.03, T:0.00
Consensus pattern (16 bp):
AAAAAAACAAAACAAA
Found at i:52840010 original size:21 final size:21
Alignment explanation
Indices: 52839962--52840019 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
52839952 GAGATTTTTG
52839962 AAAAAAACAAAGCA-AAAAAA
1 AAAAAAACAAAGCAGAAAAAA
52839982 AAACAAAACAAAGCAGAAAAAA
1 AAA-AAAACAAAGCAGAAAAAA
* *
52840004 ATAAAAATAGAAGCAG
1 AAAAAAACA-AAGCAG
52840020 GCCACAGCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
20 3 0.09
21 16 0.48
22 14 0.42
ACGTcount: A:0.76, C:0.10, G:0.10, T:0.03
Consensus pattern (21 bp):
AAAAAAACAAAGCAGAAAAAA
Found at i:52840696 original size:17 final size:17
Alignment explanation
Indices: 52840653--52840700 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
52840643 AAAGAAAAAT
52840653 CGTGTTTCAAAAATTTTCA
1 CGTGTTTC-AAAA-TTTCA
52840672 --TGTCTTCAAAATTTCA
1 CGTGT-TTCAAAATTTCA
52840688 CGTGTTTCAAAAT
1 CGTGTTTCAAAAT
52840701 AATAATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
16 5 0.19
17 15 0.58
18 6 0.23
ACGTcount: A:0.31, C:0.17, G:0.10, T:0.42
Consensus pattern (17 bp):
CGTGTTTCAAAATTTCA
Found at i:52840782 original size:17 final size:17
Alignment explanation
Indices: 52840762--52841087 Score: 96
Period size: 18 Copynumber: 18.8 Consensus size: 17
52840752 TAAAAAAATC
52840762 CGTGTTTCAAAAATTCT
1 CGTGTTTCAAAAATTCT
** **
52840779 CGTGAAT-AAAAA-AAT
1 CGTGTTTCAAAAATTCT
*
52840794 CGTGTTTTCAAAAATTCC
1 CGTG-TTTCAAAAATTCT
* *
52840812 CGTGTTTTAAAAAAATCGT
1 CGTG-TTTCAAAAATTC-T
* *
52840831 -GTTTTTAAAAAAATTCT
1 CGTGTTT-CAAAAATTCT
* *
52840848 CGTGTTTCAAATATTTT
1 CGTGTTTCAAAAATTCT
* *
52840865 CGTGTTTTCAAAATTTTT
1 CGTG-TTTCAAAAATTCT
***
52840883 CGTGTCAAAAAAATTCT
1 CGTGTTTCAAAAATTCT
* * *
52840900 CCTGTATCGAAAATT-T
1 CGTGTTTCAAAAATTCT
* * * *
52840916 CTTTATTTTCAAAATTTTT
1 C-GT-GTTTCAAAAATTCT
* *
52840935 CGTGTTTTCAAAAAATAT
1 CGTG-TTTCAAAAATTCT
* *
52840953 TGTGTTTCGAAAA-TCTT
1 CGTGTTTCAAAAATTC-T
* *
52840970 CGTGTTTTTAAAAATTTT
1 CGTG-TTTCAAAAATTCT
*
52840988 GGTGTTTCAAAAATT-T
1 CGTGTTTCAAAAATTCT
*
52841004 CCGCGTTTCTAAAAATTC-
1 -CGTGTTTC-AAAAATTCT
* *
52841022 AGATGATTT-AAAAAATCTT
1 CG-TG-TTTCAAAAATTC-T
52841041 CGTGCTTTCAAAAACTTC-
1 CGTG-TTTCAAAAA-TTCT
* * *
52841059 GGTGTTTC-TAAATTTT
1 CGTGTTTCAAAAATTCT
*
52841075 CATGTTTCAAAAA
1 CGTGTTTCAAAAA
52841088 AAAATCCTCG
Statistics
Matches: 221, Mismatches: 63, Indels: 50
0.66 0.19 0.15
Matches are distributed among these distances:
15 7 0.03
16 19 0.09
17 87 0.39
18 94 0.43
19 12 0.05
20 2 0.01
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (17 bp):
CGTGTTTCAAAAATTCT
Found at i:52840789 original size:33 final size:33
Alignment explanation
Indices: 52840752--52840834 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
52840742 TTCTTTCTTT
*
52840752 TAAAAAAATCCGTGTTTCAAAAATTCTCGTG-AA
1 TAAAAAAAT-CGTGTTTCAAAAATTCCCGTGTAA
**
52840785 TAAAAAAATCGTGTTTTCAAAAATTCCCGTGTTT
1 TAAAAAAATCGTG-TTTCAAAAATTCCCGTGTAA
52840819 TAAAAAAATCGTGTTT
1 TAAAAAAATCGTGTTT
52840835 TTAAAAAAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
32 4 0.09
33 28 0.62
34 13 0.29
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (33 bp):
TAAAAAAATCGTGTTTCAAAAATTCCCGTGTAA
Found at i:52840806 original size:16 final size:16
Alignment explanation
Indices: 52840749--52840844 Score: 77
Period size: 17 Copynumber: 5.8 Consensus size: 16
52840739 TGTTTCTTTC
52840749 TTTTAAAAAAATCCGTG
1 TTTTAAAAAAAT-CGTG
* **
52840766 TTTCAAAAATTCTCGTG
1 TTTTAAAAA-AATCGTG
**
52840783 -AATAAAAAAATCGTG
1 TTTTAAAAAAATCGTG
* *
52840798 TTTTCAAAAATTCCCGTG
1 TTTTAAAAAAAT--CGTG
52840816 TTTTAAAAAAATCGTG
1 TTTTAAAAAAATCGTG
52840832 TTTTTAAAAAAAT
1 -TTTTAAAAAAAT
52840845 TCTCGTGTTT
Statistics
Matches: 60, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
15 5 0.08
16 16 0.27
17 24 0.40
18 15 0.25
ACGTcount: A:0.42, C:0.11, G:0.10, T:0.36
Consensus pattern (16 bp):
TTTTAAAAAAATCGTG
Found at i:52840807 original size:18 final size:17
Alignment explanation
Indices: 52840786--52840844 Score: 59
Period size: 16 Copynumber: 3.5 Consensus size: 17
52840776 TCTCGTGAAT
52840786 AAAAAAATCGTGTTTT-
1 AAAAAAATCGTGTTTTA
* *
52840802 CAAAAATTCCCGTGTTTT-
1 AAAAAAAT--CGTGTTTTA
*
52840820 AAAAAAATCGTGTTTTT
1 AAAAAAATCGTGTTTTA
52840837 AAAAAAAT
1 AAAAAAAT
52840845 TCTCGTGTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
16 14 0.39
17 8 0.22
18 14 0.39
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (17 bp):
AAAAAAATCGTGTTTTA
Found at i:52841000 original size:18 final size:17
Alignment explanation
Indices: 52840839--52841087 Score: 123
Period size: 17 Copynumber: 14.3 Consensus size: 17
52840829 GTGTTTTTAA
*
52840839 AAAAATTCTCGTGTTTC
1 AAAAATTTTCGTGTTTC
*
52840856 AAATATTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
* ***
52840874 AAAATTTTTCGTGTCAA
1 AAAAATTTTCGTGTTTC
* * *
52840891 AAAAATTCTCCTGTATC
1 AAAAATTTTCGTGTTTC
* * *
52840908 GAAAA-TTTCTTTATTTTC
1 AAAAATTTTC-GT-GTTTC
*
52840926 AAAATTTTTCGTGTTTTC
1 AAAAATTTTCGTG-TTTC
*
52840944 AAAAAATATT-GTGTTTC
1 -AAAAATTTTCGTGTTTC
* * *
52840961 GAAAATCTTCGTGTTTTT
1 AAAAATTTTCGTG-TTTC
*
52840979 AAAAATTTTGGTGTTTC
1 AAAAATTTTCGTGTTTC
* *
52840996 AAAAATTTCCGCGTTTC
1 AAAAATTTTCGTGTTTC
*
52841013 TAAAAA--TTCAGATGATTTA
1 -AAAAATTTTC-G-TG-TTTC
*
52841032 AAAAATCTTCGTGCTTTC
1 AAAAATTTTCGTG-TTTC
*
52841050 AAAAA-CTTCGGTGTTTC
1 AAAAATTTTC-GTGTTTC
* *
52841067 -TAAATTTTCATGTTTC
1 AAAAATTTTCGTGTTTC
52841083 AAAAA
1 AAAAA
52841088 AAAATCCTCG
Statistics
Matches: 172, Mismatches: 43, Indels: 34
0.69 0.17 0.14
Matches are distributed among these distances:
16 21 0.12
17 67 0.39
18 66 0.38
19 15 0.09
20 3 0.02
ACGTcount: A:0.32, C:0.13, G:0.11, T:0.44
Consensus pattern (17 bp):
AAAAATTTTCGTGTTTC
Found at i:52841019 original size:35 final size:33
Alignment explanation
Indices: 52840922--52841088 Score: 102
Period size: 35 Copynumber: 4.8 Consensus size: 33
52840912 ATTTCTTTAT
* * *
52840922 TTTCAAAATTTTTCGTGTTTTCAAAAAATATTGTG
1 TTTCAAAA-ATTTCGTG-TTTCTAAAAATTTTGTG
* *
52840957 TTTCGAAAATCTTCGTGTTTTTAAAAATTTTGGTG
1 TTTCAAAAAT-TTCGTGTTTCTAAAAATTTT-GTG
* **
52840992 TTTCAAAAATTTCCGCGTTTCTAAAAATTCAGATG
1 TTTCAAAAATTT-CGTGTTTCTAAAAATTTTG-TG
* **
52841027 ATTTAAAAAATCTTCGTGCTTTC-AAAAACTTCGGTG
1 -TTTCAAAAAT-TTCGTG-TTTCTAAAAA-TTTTGTG
* * * *
52841063 TTTCTAAATTTTCATGTTTCAAAAAA
1 TTTCAAAAATTTCGTGTTTCTAAAAA
52841089 AAATCCTCGT
Statistics
Matches: 106, Mismatches: 17, Indels: 19
0.75 0.12 0.13
Matches are distributed among these distances:
33 4 0.04
34 25 0.24
35 48 0.45
36 19 0.18
37 10 0.09
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.43
Consensus pattern (33 bp):
TTTCAAAAATTTCGTGTTTCTAAAAATTTTGTG
Found at i:52841158 original size:16 final size:17
Alignment explanation
Indices: 52841137--52841172 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
52841127 TTTCAAAAAC
*
52841137 AAATTTTC-TGTTTTAA
1 AAATTTTCGTGTTTCAA
52841153 AAATTTTCGTGTTTCAA
1 AAATTTTCGTGTTTCAA
52841170 AAA
1 AAA
52841173 GAAGATTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.36, C:0.08, G:0.08, T:0.47
Consensus pattern (17 bp):
AAATTTTCGTGTTTCAA
Found at i:52841252 original size:21 final size:23
Alignment explanation
Indices: 52841218--52841259 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
52841208 CTCGTGTTTT
*
52841218 AAATTCTTCGTGTTTTTAAAAAA
1 AAATTCTTCGTGTTTCTAAAAAA
52841241 AAATT-TT-GTGTTTCTAAAA
1 AAATTCTTCGTGTTTCTAAAA
52841260 TTCTTGTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 11 0.61
22 2 0.11
23 5 0.28
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (23 bp):
AAATTCTTCGTGTTTCTAAAAAA
Found at i:52841261 original size:16 final size:15
Alignment explanation
Indices: 52841240--52841292 Score: 61
Period size: 16 Copynumber: 3.3 Consensus size: 15
52841230 TTTTTAAAAA
52841240 AAAATTTTGTGTTTCT
1 AAAATTTTGTGTTT-T
*
52841256 AAAATTCTTGTATTTT
1 AAAATT-TTGTGTTTT
52841272 AAAATTTTCGTGTTTT
1 AAAATTTT-GTGTTTT
52841288 CAAAA
1 -AAAA
52841293 AAAGAAAAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 2 0.06
16 19 0.59
17 11 0.34
ACGTcount: A:0.32, C:0.08, G:0.09, T:0.51
Consensus pattern (15 bp):
AAAATTTTGTGTTTT
Found at i:52841272 original size:37 final size:37
Alignment explanation
Indices: 52841201--52841275 Score: 91
Period size: 37 Copynumber: 2.0 Consensus size: 37
52841191 AAATAAAAAT
*
52841201 AAAAAATCTCGTGTTTTAAATTCTTCGTGTTTTTAAA
1 AAAAAATCTCGTGTTTTAAATTCTTCGTGATTTTAAA
* *
52841238 AAAAAATTTTGTGTTTCTAAAATTCTT-GT-ATTTTAAA
1 AAAAAATCTCGTGTTT-T-AAATTCTTCGTGATTTTAAA
52841275 A
1 A
52841276 TTTTCGTGTT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 22 0.67
38 3 0.09
39 8 0.24
ACGTcount: A:0.36, C:0.08, G:0.09, T:0.47
Consensus pattern (37 bp):
AAAAAATCTCGTGTTTTAAATTCTTCGTGATTTTAAA
Found at i:52846293 original size:44 final size:44
Alignment explanation
Indices: 52846228--52846702 Score: 436
Period size: 44 Copynumber: 10.7 Consensus size: 44
52846218 GTCACCGCAC
* * * *
52846228 CAAATATTATCTCCCTGAAGTTGCAGTAGAGTAGATTGAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * * * *
52846272 CAAATGTTATCTCTCTAAAGTTGCAGTGGAGTAGACTAAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * *
52846316 CAAATTTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * *
52846360 CAAATCTTATCTCCCTGAAGTTGCAATGGAGCAGATTAAAACCA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* *
52846404 CAAATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATAAAAGCTA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * *
52846448 CAAATCTTATCTCCCTGAAGTTACAGTGGAGTAGATTAAAGATA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * * * *
52846492 TCGACTCTTATCTCCCTGGAGCTGCA-TGGAACAGATTGAAA-CTA
1 -CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCTA
* * * *
52846536 CAAATCTTATCTCCCTAAAGTTGTAGTGGAGCAGATTGAAGCGA
1 CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* ** * * *
52846580 CAAATCATATAC-CTTTGAAGTTGCAGTGG-GTCAAATAAAATCTA
1 CAAATCTTAT-CTCCCTGAAGTTGCAGTGGAG-CAGATTAAAGCTA
* ** * *
52846624 CTATAGCGAGTCTCATCTCTATGAAGTTGCAGTAGAGCAGATTGAAGCTA
1 C-A-A---A-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
* * *
52846674 CGAATCTCATCTTCCTGAAGTTGCAGTGG
1 CAAATCTTATCTCCCTGAAGTTGCAGTGG
52846703 GTTAGAATGA
Statistics
Matches: 350, Mismatches: 67, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
43 22 0.06
44 268 0.77
45 26 0.07
46 1 0.00
48 1 0.00
49 2 0.01
50 29 0.08
51 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
CAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA
Found at i:52846894 original size:14 final size:13
Alignment explanation
Indices: 52846859--52846903 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
52846849 GTCTGACCCG
52846859 AAACCAAAAATAA
1 AAACCAAAAATAA
*
52846872 ATAAACAAAATATAA
1 A-AACCAAAA-ATAA
52846887 AAACCAAAAAATAA
1 AAACC-AAAAATAA
52846901 AAA
1 AAA
52846904 AGTACATTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 1 0.04
14 17 0.63
15 9 0.33
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (13 bp):
AAACCAAAAATAA
Found at i:52846903 original size:15 final size:15
Alignment explanation
Indices: 52846859--52846904 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
52846849 GTCTGACCCG
52846859 AAACC-AAAAATAAA
1 AAACCAAAAAATAAA
*
52846873 TAAA-CAAAATAT-AA
1 -AAACCAAAAAATAAA
52846887 AAACCAAAAAATAAA
1 AAACCAAAAAATAAA
52846902 AAA
1 AAA
52846905 GTACATTTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 3 0.12
14 10 0.38
15 13 0.50
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (15 bp):
AAACCAAAAAATAAA
Found at i:52852197 original size:7 final size:7
Alignment explanation
Indices: 52852167--52852195 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
52852157 ACATGATGTA
52852167 TTGTTTT
1 TTGTTTT
52852174 TTGTTTT
1 TTGTTTT
52852181 TTGTTTT
1 TTGTTTT
52852188 TT-TTTT
1 TTGTTTT
52852194 TT
1 TT
52852196 TTATCTCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 6 0.27
7 16 0.73
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (7 bp):
TTGTTTT
Found at i:52856196 original size:205 final size:199
Alignment explanation
Indices: 52855850--52856263 Score: 657
Period size: 205 Copynumber: 2.1 Consensus size: 199
52855840 TGAGCTTTAA
* *
52855850 TTATTAAATAAAATATGAATCAAATATTAATTTCTAACTAATACTGGGCTGATTAGGAATTAAAG
1 TTATTAAATAAAATATGAATCAAATATTAATTTCTAAATAATAATGGGCTGATTAGGAATTAAAG
* * * *
52855915 TAGATTTAACTTTTTTAAATTACTTATCTGCTAATTTAAAAGATTAAAACTATAAAATTCAAAGA
66 TAGATTTAACTTTTTTAAATTACTTATCTACTAATTTAAAAGATTAAAACCACAAAATTAAAAGA
* *
52855980 TCTCATAAAATCGATAGATTTAAGTACGCTTTTGTATTTTATTTTGCTCTTGACTAAACAAATTT
131 TCTCATAAAATCGATAGATTTAAGTACGCTTTTGTATTTAATTTTGCTCTTGACAAAACAAATTT
52856045 TACT
196 TACT
* *
52856049 TTATTAAATAAAATATGAATCAAATGTTAATTTCTAAATGATAATGGGCTGATTAGGAATTAAAG
1 TTATTAAATAAAATATGAATCAAATATTAATTTCTAAATAATAATGGGCTGATTAGGAATT--A-
*
52856114 TTAACGTAGATTTAACTTTTTTAAATTACTTATGTACTAATTTAAAAGATTAAAACCACAAAATT
63 --AA-GTAGATTTAACTTTTTTAAATTACTTATCTACTAATTTAAAAGATTAAAACCACAAAATT
* *
52856179 AAAAGATCTCATAAAATCGATAGGTTTAAGTACGCTTTTGTATTTAATTTTGTTCTTGACAAAAC
125 AAAAGATCTCATAAAATCGATAGATTTAAGTACGCTTTTGTATTTAATTTTGCTCTTGACAAAAC
52856244 AAATTTTACT
190 AAATTTTACT
52856254 TTATTAAATA
1 TTATTAAATA
52856264 TTTAAATAAT
Statistics
Matches: 196, Mismatches: 13, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
199 57 0.29
201 1 0.01
204 2 0.01
205 136 0.69
ACGTcount: A:0.41, C:0.10, G:0.10, T:0.40
Consensus pattern (199 bp):
TTATTAAATAAAATATGAATCAAATATTAATTTCTAAATAATAATGGGCTGATTAGGAATTAAAG
TAGATTTAACTTTTTTAAATTACTTATCTACTAATTTAAAAGATTAAAACCACAAAATTAAAAGA
TCTCATAAAATCGATAGATTTAAGTACGCTTTTGTATTTAATTTTGCTCTTGACAAAACAAATTT
TACT
Found at i:52859693 original size:29 final size:29
Alignment explanation
Indices: 52859660--52859717 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
52859650 AGGCGCATAG
*
52859660 CAGATAATAGAATATTAAGCAGGGATTGT
1 CAGATAATAGAATATTAAGCAAGGATTGT
52859689 CAGATAATAGAATATTAAGCAAGGATTGT
1 CAGATAATAGAATATTAAGCAAGGATTGT
52859718 TCTCAGAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.43, C:0.07, G:0.22, T:0.28
Consensus pattern (29 bp):
CAGATAATAGAATATTAAGCAAGGATTGT
Found at i:52862355 original size:21 final size:22
Alignment explanation
Indices: 52862298--52862355 Score: 59
Period size: 21 Copynumber: 2.7 Consensus size: 22
52862288 AAATAATGTT
*
52862298 TATAC-CCAACATAATCATTTCA
1 TATACACCAAC-TAATCATTACA
* *
52862320 TAT-CACCTACAAATCA-TACA
1 TATACACCAACTAATCATTACA
52862340 TATACACCAACTAATC
1 TATACACCAACTAATC
52862356 TATGTCAATC
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
20 6 0.21
21 16 0.55
22 7 0.24
ACGTcount: A:0.43, C:0.29, G:0.00, T:0.28
Consensus pattern (22 bp):
TATACACCAACTAATCATTACA
Found at i:52865197 original size:149 final size:149
Alignment explanation
Indices: 52865040--52865328 Score: 338
Period size: 149 Copynumber: 1.9 Consensus size: 149
52865030 AAATCACTAC
* * **
52865040 TTTTCTTAAAAACCGAA-ACTTTATTTCAAAATAGTTGAAAAAAA-ATCAAAAGTTTGTTTTAAA
1 TTTTCTTAAAAACCAAAGACTTTATTTCAAAATAGTTGAAAAAAATA-AAAAAAATTGTTTT-AA
* *
52865103 AAATTTAAA-CTGCTCC-TTTAAAATG-TCTAAAAAATAGAT-TTTTATTTTAAAAATCTAAACT
64 AAATTTAAACCT--TCCTTTTAAAATGAT-TAAAAAACAGATATATT-TTTTAAAAATCTAAACT
52865164 TTCTCTTTTTTAAAAAAAATGCTAT
125 TTCTCTTTTTTAAAAAAAATGCTAT
*** * **
52865189 TTTTCTTAAAGTTCAAAGATTTTATTTTGAAATAGTTGAAAAAAATAAAAAAAATTGTTTTAAAA
1 TTTTCTTAAAAACCAAAGACTTTATTTCAAAATAGTTGAAAAAAATAAAAAAAATTGTTTTAAAA
* * *
52865254 ATTTAAACCTTCCTTTTAAAATGATTAAAAAACATATATATTTTTTAAAAATCTAGACTTTCTTT
66 ATTTAAACCTTCCTTTTAAAATGATTAAAAAACAGATATATTTTTTAAAAATCTAAACTTTCTCT
*
52865319 TTTTTTAAAA
131 TTTTTAAAAA
52865329 TCAAAACTTT
Statistics
Matches: 118, Mismatches: 16, Indels: 12
0.81 0.11 0.08
Matches are distributed among these distances:
148 3 0.03
149 73 0.62
150 41 0.35
151 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.06, T:0.42
Consensus pattern (149 bp):
TTTTCTTAAAAACCAAAGACTTTATTTCAAAATAGTTGAAAAAAATAAAAAAAATTGTTTTAAAA
ATTTAAACCTTCCTTTTAAAATGATTAAAAAACAGATATATTTTTTAAAAATCTAAACTTTCTCT
TTTTTAAAAAAAATGCTAT
Found at i:52865552 original size:3 final size:3
Alignment explanation
Indices: 52865544--52865575 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
52865534 AACATGCTTA
52865544 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
52865576 TTACCTTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:52881610 original size:3 final size:3
Alignment explanation
Indices: 52881602--52881656 Score: 74
Period size: 3 Copynumber: 18.0 Consensus size: 3
52881592 AAAATAAAGC
* * *
52881602 TAA TAA TAA TTAA TAA TAG TAG TAA TAA TAA TAA TAG TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
52881648 TAA TAA TAA
1 TAA TAA TAA
52881657 CACTAAAATA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:52881635 original size:18 final size:18
Alignment explanation
Indices: 52881602--52881655 Score: 90
Period size: 18 Copynumber: 2.9 Consensus size: 18
52881592 AAAATAAAGC
52881602 TAATAATAATTAATAATAG
1 TAATAATAA-TAATAATAG
*
52881621 TAGTAATAATAATAATAG
1 TAATAATAATAATAATAG
52881639 TAATAATAATAATAATA
1 TAATAATAATAATAATA
52881656 ACACTAAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
18 25 0.76
19 8 0.24
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
TAATAATAATAATAATAG
Found at i:52883308 original size:50 final size:50
Alignment explanation
Indices: 52883233--52883734 Score: 341
Period size: 50 Copynumber: 10.0 Consensus size: 50
52883223 GCTTCTTCTG
* ** *
52883233 TCTGTTTAACTGCAATGTCGGGGAAGTAAGATTCGCCATCATAACTTCAA
1 TCTGTTTGACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAA
* * * ** *
52883283 TCTGTTTGACTGCAATGTCGGGGAAGCAAAATTTGCTGTCGTAGCTTCAA
1 TCTGTTTGACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAA
** * * * *
52883333 TCTGTTCCACTGC-ATCGCCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
1 TCTGTTTGACTGCAAT-GTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAA
* * * * *
52883383 TTTTTTTAATTGCAATGTCGGGGAAGTAAGATTCACCATTGTAGCTTCAA
1 TCTGTTTGACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAA
* * * * * *
52883433 TATGTTCCG-CTGC-ATCG-CTTGGGAAGTAAGATTCACCGTTGTGGCTTCAA
1 TCTGTT-TGACTGCAAT-GTC-GGGGAAGTAAGATTCGCCATTGTAGCTTCAA
* * *
52883483 TCT-TTTGAATTACAATGTCGGGGAAGTGAGATTCGCCATTGTAGCTTCAA
1 TCTGTTTG-ACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAA
* * * *
52883533 TCTG-TT-CCGTGGC-ATCG-CTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
1 TCTGTTTGAC-T-GCAAT-GTC-GGGGAAGTAAGATTCGCCATTGTAGCTTCAA
* * *
52883583 TCT-TTTGAATTGCAATGTCAGGGAAGTGAGATTCGCCATTGTAGCTTCAA
1 TCTGTTTG-ACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAA
** * * * *
52883633 -CT-TATTCCG-CTGC-ATCACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAA
1 TCTGT-TT--GACTGCAATGTC-GGGGAAGTAAGATTCGCCATTGTAGCTTCAA
* * * *
52883683 TCT-TTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAACTTCAA
1 TCTGTTTG-ACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAA
52883733 TC
1 TC
52883735 ATTGTAGCTT
Statistics
Matches: 349, Mismatches: 76, Indels: 54
0.73 0.16 0.11
Matches are distributed among these distances:
48 2 0.01
49 17 0.05
50 314 0.90
51 15 0.04
52 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (50 bp):
TCTGTTTGACTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAA
Found at i:52883406 original size:100 final size:100
Alignment explanation
Indices: 52883277--52883734 Score: 652
Period size: 100 Copynumber: 4.6 Consensus size: 100
52883267 GCCATCATAA
* * * * ** *
52883277 CTTCAATCTGTTTG-ACTGCAATGTCGGGGAAGCAAAATTTGCTGTCGTAGCTTCAATCTGTTCC
1 CTTCAATCT-TTTGAATTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCC
* * *
52883341 ACTGCATCGCCTGGGAAGTAAGATTCGCCGTTGTGG
65 GCTGCATCGCTTGGGAAGTAAGATTCACCGTTGTGG
* * * *
52883377 CTTCAATTTTTTTAATTGCAATGTCGGGGAAGTAAGATTCACCATTGTAGCTTCAATATGTTCCG
1 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCG
52883442 CTGCATCGCTTGGGAAGTAAGATTCACCGTTGTGG
66 CTGCATCGCTTGGGAAGTAAGATTCACCGTTGTGG
* *
52883477 CTTCAATCTTTTGAATTACAATGTCGGGGAAGTGAGATTCGCCATTGTAGCTTCAATCTGTTCCG
1 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCG
*
52883542 -TGGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGG
66 CT-GCATCGCTTGGGAAGTAAGATTCACCGTTGTGG
* * *
52883577 CTTCAATCTTTTGAATTGCAATGTCAGGGAAGTGAGATTCGCCATTGTAGCTTCAA-CTTATTCC
1 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAATC-TGTTCC
*
52883641 GCTGCATCACTTGGGAAGTAAGATTCACCGTTGTGG
65 GCTGCATCGCTTGGGAAGTAAGATTCACCGTTGTGG
* * *
52883677 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAACTTCAATC
1 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAATC
52883735 ATTGTAGCTT
Statistics
Matches: 324, Mismatches: 29, Indels: 9
0.90 0.08 0.02
Matches are distributed among these distances:
99 5 0.02
100 317 0.98
101 2 0.01
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (100 bp):
CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTAAGATTCGCCATTGTAGCTTCAATCTGTTCCG
CTGCATCGCTTGGGAAGTAAGATTCACCGTTGTGG
Found at i:52883596 original size:200 final size:199
Alignment explanation
Indices: 52883277--52883986 Score: 1010
Period size: 200 Copynumber: 3.5 Consensus size: 199
52883267 GCCATCATAA
* ** * * ** *
52883277 CTTCAATCTGTTTG-ACTGCAATGTCGGGGAAGCAAAATTTGCTGTCGTAGCTTCAATCTGTTCC
1 CTTCAATCT-TTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATTGTAGCTTCAATCTGTTCC
* * * *
52883341 ACTGCATCGCCTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATTTTTTTAATTGCAATGTCGGGG
65 GCTGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGG
* *
52883406 AAGTAAGATTCACCATTGTAGCTTCAATATGTTCCGCTGCATCGCTTGGGAAGTAAGATTCACCG
130 AAGTGAGATTCGCCATTGTAGCTTCAAT-TGTTCCGCTGCATCGCTTGGGAAGTAAGATTCACCG
52883471 TTGTGG
194 TTGTGG
*
52883477 CTTCAATCTTTTGAATTACAATGTCGGGGAAGTGAGATTCGCCATTGTAGCTTCAATCTGTTCCG
1 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATTGTAGCTTCAATCTGTTCCG
*
52883542 -TGGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCAGGG
66 CT-GCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGG
* *
52883606 AAGTGAGATTCGCCATTGTAGCTTCAACTTATTCCGCTGCATCACTTGGGAAGTAAGATTCACCG
130 AAGTGAGATTCGCCATTGTAGCTTCAA-TTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCACCG
52883671 TTGTGG
194 TTGTGG
52883677 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAACTTCAATCATTGTAG
1 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGA-TT--C---G------C---CATTGTAG
*
52883742 CTTCAATCTGTTCCGCTGCATTGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAA
51 CTTCAATCTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAA
*
52883807 TTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGGA
116 TTGCAATGTCGGGGAAGTGAGATTCGCCATTGTAGCTTCAAT-TGTTCCGCTGCATCGCTTGGGA
*
52883872 AGTAAGATTCGCCGTTGTGG
180 AGTAAGATTCACCGTTGTGG
* *
52883892 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGACTCGCCGTTGTAGCTTCAATCTGTTCCG
1 CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATTGTAGCTTCAATCTGTTCCG
*
52883957 CTGCATCGCTTGGAAAGTAAGATTCGCCGT
66 CTGCATCGCTTGGGAAGTAAGATTCGCCGT
52883987 ATGATCTGTT
Statistics
Matches: 461, Mismatches: 29, Indels: 40
0.87 0.05 0.08
Matches are distributed among these distances:
199 5 0.01
200 259 0.56
201 3 0.01
203 2 0.00
206 1 0.00
209 1 0.00
212 2 0.00
214 2 0.00
215 185 0.40
216 1 0.00
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (199 bp):
CTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGATTCGCCATTGTAGCTTCAATCTGTTCCG
CTGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGA
AGTGAGATTCGCCATTGTAGCTTCAATTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCACCGTT
GTGG
Found at i:52883739 original size:15 final size:15
Alignment explanation
Indices: 52883719--52883749 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
52883709 TGAGATTTGC
52883719 CATTGTAACTTCAAT
1 CATTGTAACTTCAAT
*
52883734 CATTGTAGCTTCAAT
1 CATTGTAACTTCAAT
52883749 C
1 C
52883750 TGTTCCGCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.23, G:0.10, T:0.39
Consensus pattern (15 bp):
CATTGTAACTTCAAT
Found at i:52883821 original size:115 final size:115
Alignment explanation
Indices: 52883619--52883849 Score: 401
Period size: 115 Copynumber: 2.0 Consensus size: 115
52883609 TGAGATTCGC
52883619 CATTGTAGCTTCAACTTATTCCGCTGCATCACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAAT
1 CATTGTAGCTTCAACTTATTCCGCTGCATCACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAAT
52883684 CTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAACTTCAAT
66 CTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAACTTCAAT
* ** *
52883734 CATTGTAGCTTCAA-TCTGTTCCGCTGCATTGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
1 CATTGTAGCTTCAACT-TATTCCGCTGCATCACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAA
*
52883798 TCTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAGCTTCAAT
65 TCTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAACTTCAAT
52883849 C
1 C
52883850 TGTTCCGCTG
Statistics
Matches: 110, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
114 1 0.01
115 109 0.99
ACGTcount: A:0.23, C:0.19, G:0.23, T:0.35
Consensus pattern (115 bp):
CATTGTAGCTTCAACTTATTCCGCTGCATCACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAAT
CTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAACTTCAAT
Found at i:52883890 original size:215 final size:215
Alignment explanation
Indices: 52883519--52883949 Score: 740
Period size: 215 Copynumber: 2.0 Consensus size: 215
52883509 TGAGATTCGC
52883519 CATTGTAGCTTCAATCTGTTCCGTGGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAAT
1 CATTGTAGCTTCAATCTGTTCCGTGGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAAT
52883584 CTTTTGAATTGCAATGTCAGGGAAGTGAGATTCGCCATTGTAGCTTCAACTTATTCCGCTGCATC
66 CTTTTGAATTGCAATGTCAGGGAAGTGAGATTCGCCATTGTAGCTTCAACTTATTCCGCTGCATC
52883649 ACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGA
131 ACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGA
* *
52883714 TTTGCCATTGTAACTTCAAT
196 CTCGCCATTGTAACTTCAAT
*
52883734 CATTGTAGCTTCAATCTGTTCCGCT-GCATTGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
1 CATTGTAGCTTCAATCTGTTCCG-TGGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
* * *
52883798 TCTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGCCATTGTAGCTTCAA-TCTGTTCCGCTGCA
65 TCTTTTGAATTGCAATGTCAGGGAAGTGAGATTCGCCATTGTAGCTTCAACT-TATTCCGCTGCA
* *
52883862 TCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGA
129 TCACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGA
* *
52883927 GACTCGCCGTTGTAGCTTCAAT
194 GACTCGCCATTGTAACTTCAAT
52883949 C
1 C
52883950 TGTTCCGCTG
Statistics
Matches: 204, Mismatches: 10, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
214 1 0.00
215 202 0.99
216 1 0.00
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.34
Consensus pattern (215 bp):
CATTGTAGCTTCAATCTGTTCCGTGGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAAT
CTTTTGAATTGCAATGTCAGGGAAGTGAGATTCGCCATTGTAGCTTCAACTTATTCCGCTGCATC
ACTTGGGAAGTAAGATTCACCGTTGTGGCTTCAATCTTTTGAATTGCAATGTCGGGGAAGTGAGA
CTCGCCATTGTAACTTCAAT
Found at i:52883907 original size:100 final size:100
Alignment explanation
Indices: 52883734--52883986 Score: 461
Period size: 100 Copynumber: 2.5 Consensus size: 100
52883724 TAACTTCAAT
*
52883734 CATTGTAGCTTCAATCTGTTCCGCTGCATTGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAAT
1 CATTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAAT
* *
52883799 CTTTTGAATTGCAATGTCGGGGAAGTGAGATTTGC
66 CTTTTGAATTGCAATGTCGGGGAAGTGAGACTCGC
52883834 CATTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAAT
1 CATTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAAT
52883899 CTTTTGAATTGCAATGTCGGGGAAGTGAGACTCGC
66 CTTTTGAATTGCAATGTCGGGGAAGTGAGACTCGC
* *
52883934 CGTTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGAAAGTAAGATTCGCCGT
1 CATTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCGCCGT
52883987 ATGATCTGTT
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
100 148 1.00
ACGTcount: A:0.20, C:0.21, G:0.26, T:0.33
Consensus pattern (100 bp):
CATTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCGCCGTTGTGGCTTCAAT
CTTTTGAATTGCAATGTCGGGGAAGTGAGACTCGC
Found at i:52883984 original size:50 final size:49
Alignment explanation
Indices: 52883736--52883986 Score: 245
Period size: 50 Copynumber: 5.0 Consensus size: 49
52883726 ACTTCAATCA
52883736 TTGTAGCTTCAATCTGTTCCGCTGCATTGCTTGGGAAGTAAGATTCGCCG
1 TTGTAGCTTCAATCTGTTCCGCTGCA-TGCTTGGGAAGTAAGATTCGCCG
* * **** * * * *
52883786 TTGTGGCTTCAATCTTTTGAATTGCAATG-TCGGGGAAGTGAGATTTGCCA
1 TTGTAGCTTCAATCTGTTCCGCTGC-ATGCT-TGGGAAGTAAGATTCGCCG
52883836 TTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGGAAGTAAGATTCGCCG
1 TTGTAGCTTCAATCTGTTCCGCTGCAT-GCTTGGGAAGTAAGATTCGCCG
* * **** * * *
52883886 TTGTGGCTTCAATCTTTTGAATTGCAATG-TCGGGGAAGTGAGACTCGCCG
1 TTGTAGCTTCAATCTGTTCCGCTGC-ATGCT-TGGGAAGTAAGATTCGCCG
*
52883936 TTGTAGCTTCAATCTGTTCCGCTGCATCGCTTGGAAAGTAAGATTCGCCG
1 TTGTAGCTTCAATCTGTTCCGCTGCAT-GCTTGGGAAGTAAGATTCGCCG
52883986 T
1 T
52883987 ATGATCTGTT
Statistics
Matches: 154, Mismatches: 39, Indels: 16
0.74 0.19 0.08
Matches are distributed among these distances:
49 6 0.04
50 143 0.93
51 5 0.03
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.33
Consensus pattern (49 bp):
TTGTAGCTTCAATCTGTTCCGCTGCATGCTTGGGAAGTAAGATTCGCCG
Found at i:52896703 original size:3 final size:3
Alignment explanation
Indices: 52896695--52896746 Score: 68
Period size: 3 Copynumber: 17.0 Consensus size: 3
52896685 AAAATAAAGC
* * *
52896695 TAA TAA TAA TTAA TAA TAG TAG TAA TAA TAA TAA TAG TAA TAA TAA
1 TAA TAA TAA -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
52896741 TAA TAA
1 TAA TAA
52896747 CACTAAAATA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 41 0.93
4 3 0.07
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:52896725 original size:15 final size:15
Alignment explanation
Indices: 52896695--52896745 Score: 75
Period size: 15 Copynumber: 3.3 Consensus size: 15
52896685 AAAATAAAGC
*
52896695 TAATAATAATTAATAA
1 TAATAGTAA-TAATAA
*
52896711 TAGTAGTAATAATAA
1 TAATAGTAATAATAA
52896726 TAATAGTAATAATAA
1 TAATAGTAATAATAA
52896741 TAATA
1 TAATA
52896746 ACACTAAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
15 25 0.78
16 7 0.22
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (15 bp):
TAATAGTAATAATAA
Found at i:52896728 original size:18 final size:18
Alignment explanation
Indices: 52896695--52896746 Score: 86
Period size: 18 Copynumber: 2.8 Consensus size: 18
52896685 AAAATAAAGC
52896695 TAATAATAATTAATAATAG
1 TAATAATAA-TAATAATAG
*
52896714 TAGTAATAATAATAATAG
1 TAATAATAATAATAATAG
52896732 TAATAATAATAATAA
1 TAATAATAATAATAA
52896747 CACTAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 23 0.74
19 8 0.26
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
TAATAATAATAATAATAG
Found at i:52896762 original size:18 final size:18
Alignment explanation
Indices: 52896694--52896758 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
52896684 GAAAATAAAG
52896694 CTAATAATAATTAATAATA
1 CTAATAATAA-TAATAATA
* *
52896713 GTAGTAATAATAATAATA
1 CTAATAATAATAATAATA
* *
52896731 GTAATAATAATAATAACA
1 CTAATAATAATAATAATA
52896749 CTAA-AATAAT
1 CTAATAATAAT
52896759 TAATTAAACA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
17 6 0.15
18 27 0.66
19 8 0.20
ACGTcount: A:0.58, C:0.05, G:0.05, T:0.32
Consensus pattern (18 bp):
CTAATAATAATAATAATA
Found at i:52897285 original size:21 final size:21
Alignment explanation
Indices: 52897259--52897301 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
52897249 TAGCCATGTG
52897259 GGGTTCCTTGGCCCCTGTTGC
1 GGGTTCCTTGGCCCCTGTTGC
52897280 GGGTTCCTTGGCCCCTGTTGC
1 GGGTTCCTTGGCCCCTGTTGC
52897301 G
1 G
52897302 CCGCCGCTCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.00, C:0.33, G:0.35, T:0.33
Consensus pattern (21 bp):
GGGTTCCTTGGCCCCTGTTGC
Found at i:52898770 original size:9 final size:9
Alignment explanation
Indices: 52898756--52898792 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
52898746 TATAGTTTGA
52898756 TATTCGAAT
1 TATTCGAAT
52898765 TATTCGAAT
1 TATTCGAAT
*
52898774 TATTCGAGT
1 TATTCGAAT
52898783 TATTCGAAT
1 TATTCGAAT
52898792 T
1 T
52898793 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:52898862 original size:9 final size:9
Alignment explanation
Indices: 52898845--52898875 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
52898835 TCGAGTTGAT
52898845 TCGAATAAC
1 TCGAATAAC
*
52898854 TCGATTAAC
1 TCGAATAAC
52898863 TCGAATAAC
1 TCGAATAAC
52898872 TCGA
1 TCGA
52898876 TCCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:52902695 original size:44 final size:44
Alignment explanation
Indices: 52902647--52902809 Score: 150
Period size: 44 Copynumber: 3.7 Consensus size: 44
52902637 TCATCGTTTT
* *
52902647 AATCTACTCCACTGTAACTTTAGGGAGATAGGATTAGTAGCTTC
1 AATCTACTCCACTGCAACTTTAGGGAGATAGGATTAGTATCTTC
* * * * *
52902691 AATCTGCCCCACTGCAA-TTTCAGGGAGATAAGATTGGTATCTTT
1 AATCTACTCCACTGCAACTTT-AGGGAGATAGGATTAGTATCTTC
* * * *
52902735 AACCTGCTCCACTGCAACTTCAGGGAGATAAGG-TTTGCTATCTTC
1 AATCTACTCCACTGCAACTTTAGGGAGAT-AGGATTAG-TATCTTC
* * * *
52902780 AGTCTACTCCACTACAACTTCAGTGAGATA
1 AATCTACTCCACTGCAACTTTAGGGAGATA
52902810 AGGTCTGCAA
Statistics
Matches: 97, Mismatches: 18, Indels: 8
0.79 0.15 0.07
Matches are distributed among these distances:
43 3 0.03
44 60 0.62
45 34 0.35
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (44 bp):
AATCTACTCCACTGCAACTTTAGGGAGATAGGATTAGTATCTTC
Found at i:52902854 original size:44 final size:45
Alignment explanation
Indices: 52902687--52903440 Score: 354
Period size: 44 Copynumber: 16.8 Consensus size: 45
52902677 GGATTAGTAG
* * * * **
52902687 CTTCAATCTGCCCCACTGCAATTTCAGGGAGATAAGAT-TGGTAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
* * *
52902731 CTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
** * * *
52902776 CTTCAGTCTACTCCACTACAACTTCAGTGAGATAAGGTCTGCAAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
* * *
52902821 -TTCAACCTGC-CCTACTGCAACTTGAGGGGGATAAGGTTTG--AT
1 CTTCAACCTGCTCC-ACTGCAACTTCAGGGAGATAAGGTCTGCAAT
* * * * * *
52902863 -AT-GATCTGCTCTACTGCAACTTCAGTGAGATAAGATCTGCAATGTAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGC-A---AT
** * * * *
52902910 AGCTTCAATTTGTTCCACTACAACTTCAAGGAAATAAGGT-T-CGATAT
1 --CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGC-A-AT
* *** * * * * *
52902957 ATTCGGTCTGCTCCACTACAACTTCAGGAAGATAAGATTTG-TAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
* * * *
52903001 CTTCAACCTGCTCCACTACAACTTTAGGGAGATAAGGTTTGCTAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
** * * * * *
52903046 CTTCAGTCTACTCCACTACAACTTTAGTGAGATAAGAGT-TG-TAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAG-GTCTGCAAT
* * * **
52903090 CTTTAACCTGCTCTACTGTAACTTTCA-GGAGATAAGGTCCACAAT
1 CTTCAACCTGCTCCACTGCAAC-TTCAGGGAGATAAGGTCTGCAAT
* * * *
52903135 -TTCAATCTGC-CCTACTGCAACTTGAGGGGGATAAGGTTTG--AT
1 CTTCAACCTGCTCC-ACTGCAACTTCAGGGAGATAAGGTCTGCAAT
* * ** * * *
52903177 -AT-GATTTGCTCTACTGCAACTTCAGTGAGATAAGATCTGCAATGTAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGC-A---AT
* * * * *
52903224 AGCTTCAATCC-GTTCCACTACAACTTCAAGGAAATAAGAT-T-CGATAT
1 --CTTCAA-CCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGC-A-AT
**** * * * * *
52903271 CTTTGGTCTTCTCCACTCCAACTTCAGGGAGATAAGATTTG-TAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
52903315 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
* * * *
52903360 -TTCAACCTACCCCACTGCAACTTCAGGGGGATAAGGTTTGTC-A-
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTG-CAAT
* * *
52903403 CTTCAACCTGCTCTACTCCAACTTCAGAGAGATAAGGT
1 CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGT
52903441 TTGTGGCTTT
Statistics
Matches: 537, Mismatches: 133, Indels: 80
0.72 0.18 0.11
Matches are distributed among these distances:
41 54 0.10
42 8 0.01
43 8 0.01
44 253 0.47
45 143 0.27
46 4 0.01
47 10 0.02
49 4 0.01
50 4 0.01
51 49 0.09
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (45 bp):
CTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTCTGCAAT
Found at i:52903222 original size:314 final size:314
Alignment explanation
Indices: 52902653--52903440 Score: 1093
Period size: 314 Copynumber: 2.5 Consensus size: 314
52902643 TTTTAATCTA
** * * * * * *
52902653 CTCCACTGTAACTTTAGGGAGATAGGATTAGTAGCTTCAATCTGCCCCACTGCAA-TTTCAGGGA
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTATCTTCAACCTGCTCCACTGCAACTTT-AGGGA
* * * *
52902717 GATAA-GATTGGTATCTTTAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTTGCTATCTTCA
65 GATAAGGTTTGCTATCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTG-TATCTTCA
** * * * **
52902781 GTCTACTCCACTACAACTTCAGTGAGATAAGGTCTGCAATTTCAACCTGCCCTACTGCAACTTGA
129 ACCTGCTCTACTACAACTTCAGAGAGATAAGGTCCACAATTTCAACCTGCCCTACTGCAACTTGA
52902846 GGGGGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGTGAGATAAGATCTGCAATGTATA
194 GGGGGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGTGAGATAAGATCTGCAATGTATA
** *
52902911 GCTTCAATTTGTTCCACTACAACTTCAAGGAAATAAGGTTCGATATATTCGGTCTG
259 GCTTCAATCCGTTCCACTACAACTTCAAGGAAATAAGATTCGATATATTCGGTCTG
* *
52902967 CTCCACTACAACTTCAGGAAGATAAGATTTGTATCTTCAACCTGCTCCACTACAACTTTAGGGAG
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTATCTTCAACCTGCTCCACTGCAACTTTAGGGAG
** * * * *
52903032 ATAAGGTTTGCTATCTTCAGTCTACTCCACTACAACTTTAGTGAGATAAGAG-TTGTATCTTTAA
66 ATAAGGTTTGCTATCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAG-GTTTGTATCTTCAA
** *
52903096 CCTGCTCTACTGTAACTTTCAG-GAGATAAGGTCCACAATTTCAATCTGCCCTACTGCAACTTGA
130 CCTGCTCTACTACAAC-TTCAGAGAGATAAGGTCCACAATTTCAACCTGCCCTACTGCAACTTGA
*
52903160 GGGGGATAAGGTTTGATATGATTTGCTCTACTGCAACTTCAGTGAGATAAGATCTGCAATGTATA
194 GGGGGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGTGAGATAAGATCTGCAATGTATA
* * *
52903225 GCTTCAATCCGTTCCACTACAACTTCAAGGAAATAAGATTCGATATCTTTGGTCTT
259 GCTTCAATCCGTTCCACTACAACTTCAAGGAAATAAGATTCGATATATTCGGTCTG
* *
52903281 CTCCACTCCAACTTCAGGGAGATAAGATTTGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTACAACTTCAGGGAGATAAGATTTGTATCTTCAACCTGCTCCACTGCAACTTTAGGGAG
* * * *
52903346 ATAAGGTCTGCAAT-TTCAACCTACCCCACTGCAACTTCAGGGGGATAAGGTTTGTCA-CTTCAA
66 ATAAGGTTTGCTATCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGT-ATCTTCAA
*
52903409 CCTGCTCTACTCCAACTTCAGAGAGATAAGGT
130 CCTGCTCTACTACAACTTCAGAGAGATAAGGT
52903441 TTGTGGCTTT
Statistics
Matches: 415, Mismatches: 52, Indels: 15
0.86 0.11 0.03
Matches are distributed among these distances:
312 6 0.01
313 61 0.15
314 300 0.72
315 47 0.11
316 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (314 bp):
CTCCACTACAACTTCAGGGAGATAAGATTTGTATCTTCAACCTGCTCCACTGCAACTTTAGGGAG
ATAAGGTTTGCTATCTTCAACCTACTCCACTGCAACTTCAGGGAGATAAGGTTTGTATCTTCAAC
CTGCTCTACTACAACTTCAGAGAGATAAGGTCCACAATTTCAACCTGCCCTACTGCAACTTGAGG
GGGATAAGGTTTGATATGATCTGCTCTACTGCAACTTCAGTGAGATAAGATCTGCAATGTATAGC
TTCAATCCGTTCCACTACAACTTCAAGGAAATAAGATTCGATATATTCGGTCTG
Found at i:52903610 original size:51 final size:51
Alignment explanation
Indices: 52903519--52903626 Score: 126
Period size: 51 Copynumber: 2.1 Consensus size: 51
52903509 TCTACTTCAA
* * * *
52903519 CTTTAATCTATTCCACTACAACACTAGGGAAACAATATTCGCTACCTTTAG
1 CTTTAATCTATTCCACTACAACACTAGAGAAACAAGATTCGCCACCTTAAG
* ** * * *
52903570 CTTTAATCTGTTCCACTGGAACGCTAGAGAAATAAGATTCGCCGCCTTAAG
1 CTTTAATCTATTCCACTACAACACTAGAGAAACAAGATTCGCCACCTTAAG
52903621 CTTTAA
1 CTTTAA
52903627 CGATAGGGAC
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (51 bp):
CTTTAATCTATTCCACTACAACACTAGAGAAACAAGATTCGCCACCTTAAG
Found at i:52903694 original size:87 final size:87
Alignment explanation
Indices: 52903555--52903713 Score: 210
Period size: 87 Copynumber: 1.8 Consensus size: 87
52903545 GGGAAACAAT
* * * *
52903555 ATTCGCTACCTTTAGCTTTAATCTGTTCCACTGGAACGCTAGAGAAATAAGATTCGCCGCCTTAA
1 ATTCGCTACCTTCAGCTTTAATCTGCTCCACTGGAACGCTAGAGAAACAAGATTCGCCACCTTAA
52903620 GCTTTAACGATAGGGACATAAG
66 GCTTTAACGATAGGGACATAAG
*** * * * * *
52903642 ATTCGCTACCTTCAGCTTTAATCTGCTCTGTTGTAATGCTAGGGAAACAAGATTCGCTACCTTTA
1 ATTCGCTACCTTCAGCTTTAATCTGCTCCACTGGAACGCTAGAGAAACAAGATTCGCCACCTTAA
52903707 GCTTTAA
66 GCTTTAA
52903714 TCTGTTTCAC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
87 60 1.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (87 bp):
ATTCGCTACCTTCAGCTTTAATCTGCTCCACTGGAACGCTAGAGAAACAAGATTCGCCACCTTAA
GCTTTAACGATAGGGACATAAG
Found at i:52903794 original size:21 final size:21
Alignment explanation
Indices: 52903753--52903795 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
52903743 GATTCGCTGC
* *
52903753 CTTCAGCTTTAATCTGCTCCA
1 CTTCAACTTTAATCTACTCCA
*
52903774 CTTCAACTTTAATCTATTCCA
1 CTTCAACTTTAATCTACTCCA
52903795 C
1 C
52903796 CGCAACGCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.33, G:0.05, T:0.40
Consensus pattern (21 bp):
CTTCAACTTTAATCTACTCCA
Found at i:52903801 original size:21 final size:21
Alignment explanation
Indices: 52903759--52903801 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
52903749 CTGCCTTCAG
* **
52903759 CTTTAATCTGCTCCACTTCAA
1 CTTTAATCTACTCCACCGCAA
*
52903780 CTTTAATCTATTCCACCGCAA
1 CTTTAATCTACTCCACCGCAA
52903801 C
1 C
52903802 GCTAGGGAAA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.35, G:0.05, T:0.35
Consensus pattern (21 bp):
CTTTAATCTACTCCACCGCAA
Found at i:52904659 original size:27 final size:27
Alignment explanation
Indices: 52904629--52904693 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 27
52904619 AAACTTCTAG
52904629 AGTAATATGC-AAAACATCCATTGTGAA
1 AGTAATAT-CAAAAACATCCATTGTGAA
*
52904656 AGTATTATCAGAAAACATCCATTGTGAA
1 AGTAATATCA-AAAACATCCATTGTGAA
*
52904684 AGTATTATCA
1 AGTAATATCA
52904694 GTCTATTAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
26 1 0.03
27 7 0.20
28 27 0.77
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (27 bp):
AGTAATATCAAAAACATCCATTGTGAA
Found at i:52904671 original size:28 final size:28
Alignment explanation
Indices: 52904639--52904694 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
52904629 AGTAATATGC
52904639 AAAACATCCATTGTGAAAGTATTATCAG
1 AAAACATCCATTGTGAAAGTATTATCAG
52904667 AAAACATCCATTGTGAAAGTATTATCAG
1 AAAACATCCATTGTGAAAGTATTATCAG
52904695 TCTATTAATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (28 bp):
AAAACATCCATTGTGAAAGTATTATCAG
Found at i:52915051 original size:44 final size:44
Alignment explanation
Indices: 52914988--52915352 Score: 401
Period size: 44 Copynumber: 8.3 Consensus size: 44
52914978 TGCACTCTTG
* * *
52914988 AAGTTACAGTGGAGTAGATTGAAGCTACCAATCTTATCTTCCTA
1 AAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTATCTCCCTA
* * * *
52915032 AAGTTGCAGTGGAGTAGATTAAAGCCACAAATTTTATCTCCCTG
1 AAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTATCTCCCTA
* *
52915076 AAGTTGCTGTGGAGTAGACTGAAG-TCACAAATCTTATCTCCCTA
1 AAGTTGCAGTGGAGTAGATTGAAGCT-ACAAATCTTATCTCCCTA
* * * * * * * * *
52915120 AAGTTACACTAGAGCATATTAAAACCACAAATCTTATCTTCCTA
1 AAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTATCTCCCTA
* * *
52915164 AAGTTGCAGTGGAGTAGATTAAAGCTAAAAATCTTATCTCCCTG
1 AAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTATCTCCCTA
* * * *
52915208 AAGTTTCAGTGGAGCAGATTGAAGATAGCGAATCTTATCTCCCTA
1 AAGTTGCAGTGGAGTAGATTGAAGCTA-CAAATCTTATCTCCCTA
* *
52915253 AAGTTGCAGTGGAATAGATTGAAGCTACAAATCTTATCTCCTTA
1 AAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTATCTCCCTA
* ** * *
52915297 AAGTTGCAGTGGAGCAGATTGAAGAGACAAATCATATGC-CTCTA
1 AAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTAT-CTCCCTA
52915341 AAGTTGCAGTGG
1 AAGTTGCAGTGG
52915353 GTCGAATTAA
Statistics
Matches: 263, Mismatches: 54, Indels: 8
0.81 0.17 0.02
Matches are distributed among these distances:
44 225 0.86
45 38 0.14
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
AAGTTGCAGTGGAGTAGATTGAAGCTACAAATCTTATCTCCCTA
Found at i:52915396 original size:13 final size:13
Alignment explanation
Indices: 52915378--52915441 Score: 85
Period size: 13 Copynumber: 4.9 Consensus size: 13
52915368 AATTCTTCAT
52915378 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
52915391 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
52915404 TG-TTGTGGAAAAG
1 TGCTT-TTGAAAAG
* *
52915417 TACTTTTGAGAAG
1 TGCTTTTGAAAAG
52915430 TGCTTTTGAAAA
1 TGCTTTTGAAAA
52915442 ATTTGAGTGT
Statistics
Matches: 43, Mismatches: 6, Indels: 4
0.81 0.11 0.08
Matches are distributed among these distances:
12 2 0.05
13 39 0.91
14 2 0.05
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:52916363 original size:14 final size:13
Alignment explanation
Indices: 52916327--52916372 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 13
52916317 CGTCCAGATC
52916327 AAAACCAAAAATA
1 AAAACCAAAAATA
*
52916340 AATAAACAAAATATA
1 AA-AACCAAAA-ATA
52916355 AAAACCAAAAAATA
1 AAAACC-AAAAATA
52916369 AAAA
1 AAAA
52916373 AGTCCATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
13 2 0.07
14 17 0.61
15 9 0.32
ACGTcount: A:0.78, C:0.11, G:0.00, T:0.11
Consensus pattern (13 bp):
AAAACCAAAAATA
Found at i:52916372 original size:15 final size:15
Alignment explanation
Indices: 52916327--52916373 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
52916317 CGTCCAGATC
52916327 AAAACC-AAAAATAA
1 AAAACCAAAAAATAA
*
52916341 ATAAA-CAAAATAT-A
1 A-AAACCAAAAAATAA
52916355 AAAACCAAAAAATAA
1 AAAACCAAAAAATAA
52916370 AAAA
1 AAAA
52916374 GTCCATTTGC
Statistics
Matches: 27, Mismatches: 2, Indels: 7
0.75 0.06 0.19
Matches are distributed among these distances:
13 3 0.11
14 11 0.41
15 13 0.48
ACGTcount: A:0.79, C:0.11, G:0.00, T:0.11
Consensus pattern (15 bp):
AAAACCAAAAAATAA
Found at i:52916703 original size:22 final size:24
Alignment explanation
Indices: 52916657--52916710 Score: 76
Period size: 22 Copynumber: 2.3 Consensus size: 24
52916647 ATAGAAACAT
*
52916657 GAAGCAAAAATAGTAAAAAAGACA
1 GAAGCAAAAATAGTAAAAAACACA
*
52916681 GAAGCAAAAA-A-TAGAAAACACA
1 GAAGCAAAAATAGTAAAAAACACA
52916703 GAAGCAAA
1 GAAGCAAA
52916711 CACGAAGATT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 17 0.61
23 1 0.04
24 10 0.36
ACGTcount: A:0.67, C:0.11, G:0.17, T:0.06
Consensus pattern (24 bp):
GAAGCAAAAATAGTAAAAAACACA
Found at i:52931417 original size:28 final size:28
Alignment explanation
Indices: 52931337--52931419 Score: 85
Period size: 28 Copynumber: 3.0 Consensus size: 28
52931327 CATGGGATTG
* * *
52931337 ATTTGCTCACACAAGTTGTAATATTCAA
1 ATTTGCTCACACAAGCTGTGATATTTAA
* * * * *
52931365 ATTTTCTCACACGAGCTATGGTATTTGA
1 ATTTGCTCACACAAGCTGTGATATTTAA
*
52931393 ATTTGCTCACACAAGGTGTGATATTTA
1 ATTTGCTCACACAAGCTGTGATATTTA
52931420 GGCTACTCAC
Statistics
Matches: 41, Mismatches: 14, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (28 bp):
ATTTGCTCACACAAGCTGTGATATTTAA
Found at i:52932636 original size:17 final size:17
Alignment explanation
Indices: 52932591--52932637 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 17
52932581 TTCCACCCAG
*
52932591 TTTCATCTTTTATTAGT
1 TTTCATATTTTATTAGT
*
52932608 TTTCTTTATTTTACTTA-T
1 TTTC-ATATTTTA-TTAGT
52932626 TTTCATATTTTA
1 TTTCATATTTTA
52932638 ATTTTAATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
17 11 0.44
18 11 0.44
19 3 0.12
ACGTcount: A:0.19, C:0.11, G:0.02, T:0.68
Consensus pattern (17 bp):
TTTCATATTTTATTAGT
Found at i:52932762 original size:4 final size:4
Alignment explanation
Indices: 52932753--52932803 Score: 102
Period size: 4 Copynumber: 12.8 Consensus size: 4
52932743 TAAGTCTTTT
52932753 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
52932801 ATA
1 ATA
52932804 GATTGGGAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.51, C:0.24, G:0.00, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:52933829 original size:18 final size:20
Alignment explanation
Indices: 52933806--52933846 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
52933796 TTTTTAATAT
52933806 ATGTAAAA-ATA-ATATAAA
1 ATGTAAAATATAGATATAAA
52933824 ATGTAAAATTATAGATATAAA
1 ATGTAAAA-TATAGATATAAA
52933845 AT
1 AT
52933847 AAATTCAAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 8 0.40
20 3 0.15
21 9 0.45
ACGTcount: A:0.61, C:0.00, G:0.07, T:0.32
Consensus pattern (20 bp):
ATGTAAAATATAGATATAAA
Found at i:52940911 original size:21 final size:21
Alignment explanation
Indices: 52940885--52940925 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
52940875 AGACGAGCAA
* *
52940885 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
52940906 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
52940926 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:52947873 original size:24 final size:25
Alignment explanation
Indices: 52947827--52947874 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
52947817 TACCCATAAT
*
52947827 AATATTAAACAATTATAATATTGAA
1 AATATTAAACAATTATAACATTGAA
* *
52947852 AATATTGAA-AATTATTACATTGA
1 AATATTAAACAATTATAACATTGA
52947875 CATTAATATT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.52, C:0.04, G:0.06, T:0.38
Consensus pattern (25 bp):
AATATTAAACAATTATAACATTGAA
Found at i:52951991 original size:20 final size:20
Alignment explanation
Indices: 52951966--52952004 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
52951956 GCTGACTTGG
52951966 TGGTTGGACACAACGATTAA
1 TGGTTGGACACAACGATTAA
52951986 TGGTTGGACACAACGATTA
1 TGGTTGGACACAACGATTA
52952005 CAACAATTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (20 bp):
TGGTTGGACACAACGATTAA
Found at i:52969488 original size:895 final size:894
Alignment explanation
Indices: 52955596--52970954 Score: 30282
Period size: 893 Copynumber: 17.2 Consensus size: 894
52955586 TCTTATTTCT
*
52955596 CTTGAACTT-AGACCT-CCAAACACTTCCAGAACTCAT-ACCACTAAAGCTAACAGATATTT-TG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52955657 T-ATATTTTCACAACACACAAAATATCAGAACATTTTGGGGCGTTACACTAGCCTTCAGAAACTT
66 TCATATTTTCACAACA-ACAAAAT-T-AGAA-ATTTTGGGGCGTTACACT--CCTTCAGAAACTT
52955721 ATATTTGACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACAT
125 ATATTTGACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACAT
* *
52955786 AAAACTCGAAAAACTAAACCAATGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCA
190 AAAACTCGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCA
*
52955851 TCTCTATACACTGGAATATCAGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACC
255 TCTCTATACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACC
* *
52955916 CTTTGTTAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATG
320 CTTTATTAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATA
52955981 AAGTCAAAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAA
385 AAGTCAAAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAA
52956046 GAGAAGAAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACAC
450 GAGAAGAAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACAC
*
52956111 GGCAGAGAAAAAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAA
515 GGCAGAGAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAA
52956176 ACTGATAAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTAT
580 ACTGATAAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTAT
52956241 TAACCCACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACAT
645 TAACCCACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACAT
*
52956306 AAAAAAAATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACCC
710 AAAAAAAATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTC
52956371 CGCTTAACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTA
775 CGCTTAACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTA
52956436 CTGAACAAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
840 CTGAACAAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52956491 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52956556 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
*
52956621 GACCAATATATCCCTTAATTAATCACTTGCTTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
*
52956686 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATGACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
*
52956751 TACACTGGAATATCCGCTTAAAACTTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52956816 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52956881 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
*
52956946 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGATAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52957011 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52957076 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52957141 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52957206 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACT-CGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
*
52957270 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAA
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52957335 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52957384 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52957449 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52957514 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52957579 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52957644 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52957709 TAACTGTCTAATCAAAATACGATAACTAA-GGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52957773 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52957838 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52957903 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52957968 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52958033 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
*
52958098 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCACTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52958163 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52958228 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52958277 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52958342 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52958407 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52958472 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52958537 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52958602 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52958667 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52958732 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52958797 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52958862 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52958927 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52958992 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52959057 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52959122 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52959171 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52959236 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52959301 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52959366 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52959431 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52959496 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52959561 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52959626 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52959691 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52959756 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52959821 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52959886 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52959951 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52960016 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52960065 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52960130 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52960195 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52960260 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52960325 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52960390 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52960455 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52960520 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52960585 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52960650 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52960715 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52960780 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52960845 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52960910 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52960959 CTTGAACTT-GGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52961023 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52961088 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52961153 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52961218 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52961283 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52961348 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52961413 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52961478 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52961543 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52961608 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52961673 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52961738 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52961803 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52961852 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52961917 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52961982 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52962047 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52962112 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52962177 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52962242 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52962307 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52962372 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52962437 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52962502 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52962567 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52962632 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52962697 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
*
52962746 CTTGAACTTGAGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52962811 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52962876 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52962941 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52963006 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52963071 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52963136 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52963201 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52963266 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52963331 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52963396 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52963461 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52963526 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52963591 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52963640 CTTGAACTT-GGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52963704 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52963769 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52963834 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52963899 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52963964 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52964029 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52964094 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52964159 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52964224 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52964289 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52964354 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52964419 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52964484 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52964533 CTTGAACTT-GGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52964597 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52964662 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52964727 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52964792 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52964857 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52964922 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52964987 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52965052 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52965117 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52965182 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52965247 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACT-CGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52965311 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52965376 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52965425 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52965490 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52965555 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52965620 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52965685 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52965750 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52965815 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52965880 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
*
52965945 GAAACAAAAGTCTAATGCTAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52966010 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52966075 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52966140 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52966205 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52966270 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
*
52966319 CTTGAACTTGAGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52966384 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52966449 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52966514 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52966579 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52966644 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52966709 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52966774 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52966839 GAAACAAAAGTCTAATG-CAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52966903 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52966968 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52967033 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52967098 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52967163 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52967212 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52967277 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52967342 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52967407 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52967472 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52967537 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52967602 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52967667 AAACAAGATTCGACCAAAGGGGAACAAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAG
456 AAACAAGATTCGACCAAAGGGGAAC-AAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAG
52967732 AGAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGA
520 AGAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGA
52967797 TAAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACC
585 TAAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACC
52967862 CACTAAAACACAACTACTCAGCAGTCGTTAATTTAATTTGAACTCCACCACGCCACACACATAAA
650 CACTAAAACACAACTACTCAGCAGTC--TAATTTAATTTGAACTCCACCACGCCACACACATAAA
52967927 AAAAATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGC
713 AAAAATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGC
52967992 TTAACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTG
778 TTAACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTG
52968057 AACAAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
843 AACAAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
*
52968109 CTTGAACTTGAGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52968174 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52968239 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52968304 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52968369 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52968434 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52968499 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52968564 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52968629 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52968694 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52968759 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCCCACACACATAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACG--CCACACACATAAAA
52968824 AAAATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCT
714 AAAATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCT
52968889 TAACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGA
779 TAACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGA
52968954 ACAAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
844 ACAAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52969005 CTTGAACTT-GGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52969069 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52969134 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52969199 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52969264 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
52969329 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52969394 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52969459 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
*
52969524 GAAACAAAAGTCTAATGCTAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52969589 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52969654 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
*
52969719 AATTAATTCCCCTGCTTGCGCAAGGACTTGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
52969784 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
781 ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
52969849 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
846 AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52969898 CTTGAACTT-GGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
*
52969962 TCATATTTTCACAACAACAAAATTAGAAATTTTGCGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52970027 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
131 GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
52970092 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
196 CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
52970157 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
261 TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
*
52970222 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATGAAGTCA
326 TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
52970287 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
391 AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
52970352 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
456 AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
52970417 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
521 GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
52970482 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
586 AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
52970547 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACAT-AAAAA
651 ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
52970611 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCAG-TT
716 AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCC-GCTT
*
52970675 AAACACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAA
780 AACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAA
*
52970740 TAAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
845 CAAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
52970790 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
1 CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
52970855 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
66 TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
52970920 GACCAATATATCCCTTAATTAATCACTTGATTCAT
131 GACCAATATATCCCTTAATTAATCACTTGATTCAT
52970955 TGGTGGGTTG
Statistics
Matches: 14409, Mismatches: 37, Indels: 38
0.99 0.00 0.00
Matches are distributed among these distances:
892 734 0.05
893 6140 0.43
894 5509 0.38
895 833 0.06
896 422 0.03
897 723 0.05
898 24 0.00
899 10 0.00
900 14 0.00
ACGTcount: A:0.42, C:0.23, G:0.13, T:0.22
Consensus pattern (894 bp):
CTTGAACTTGGGACCTCCCAAACACTTCCAGAACTCATAACCACTAAAGCTAACAGATATTTGTG
TCATATTTTCACAACAACAAAATTAGAAATTTTGGGGCGTTACACTCCTTCAGAAACTTATATTT
GACCAATATATCCCTTAATTAATCACTTGATTCATCAACCAACAAAATATCTCCAACATAAAACT
CGAGAAACTAAACCAACGAAGATTTGAAAACTTACCATGACGAGTTCGATAACCAGTCATCTCTA
TACACTGGAATATCCGCTTAAAACCTTTGAACAGCACCTAAACGAGAGTAAAACGAACCCTTTAT
TAACTGTCTAATCAAAATACGATAACTAAGGGGGGAAATTCCACTTACAGAAATAGATAAAGTCA
AAATTTACAGCCAAAGAGATGACTCCCAAAAAAATACAGAAACGAAAAGAGAGGGCAAAGAGAAG
AAACAAGATTCGACCAAAGGGGAACAAAAACCAAAAGTGAACAAGAAGGGAGAAAACACGGCAGA
GAAACAAAAGTCTAATGCCAGAAAATTTGTTGGGAAAAGAAAGAAATAGAAAATAGAAAACTGAT
AAGGAGAAAATCTTATTTTGATAACTTCTCCCCAATTATCTCCTAAAAACACTCCCTATTAACCC
ACTAAAACACAACTACTCAGCAGTCTAATTTAATTTGAACTCCACCACGCCACACACATAAAAAA
AATTAATTCCCCTGCTTGCGCAAGGACTCGAACACAAGATCTCCTACACGCTACCACTCCGCTTA
ACCACTAGACCAGCAGCCCCATTCTGATAAATTTTTACCAACAATCAAATAAAAGCCTACTGAAC
AAGAGTAAGACCTAATTCATTCAAAATACCAAAATTTCCCAAGCGAAGA
Found at i:52975549 original size:15 final size:15
Alignment explanation
Indices: 52975529--52975561 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
52975519 AAATTTAAAA
52975529 AAAAAT-ATGAAAATT
1 AAAAATGATG-AAATT
52975544 AAAAATGATGAAATT
1 AAAAATGATGAAATT
52975559 AAA
1 AAA
52975562 GAGGTTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 14 0.82
16 3 0.18
ACGTcount: A:0.67, C:0.00, G:0.09, T:0.24
Consensus pattern (15 bp):
AAAAATGATGAAATT
Found at i:52977643 original size:29 final size:31
Alignment explanation
Indices: 52977592--52977653 Score: 76
Period size: 30 Copynumber: 2.1 Consensus size: 31
52977582 AGCCTACATC
*
52977592 TTTATAATTTTTAAAGAATTAAA-TGAAATT
1 TTTATAATTTTTAAAGAACTAAAGTGAAATT
*
52977622 TTTAT-ATTTTT-AAGAAGCTAAAGTGTAATT
1 TTTATAATTTTTAAAGAA-CTAAAGTGAAATT
52977652 TT
1 TT
52977654 ACCTTTACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 5 0.18
29 10 0.36
30 13 0.46
ACGTcount: A:0.40, C:0.02, G:0.10, T:0.48
Consensus pattern (31 bp):
TTTATAATTTTTAAAGAACTAAAGTGAAATT
Found at i:52980535 original size:12 final size:12
Alignment explanation
Indices: 52980520--52980552 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
52980510 ATAGTTCGAT
52980520 TTAGTCATTTAA
1 TTAGTCATTTAA
*
52980532 TTAGTCAATTAA
1 TTAGTCATTTAA
52980544 TT-GTCATTT
1 TTAGTCATTT
52980553 TAGGTTTCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 6 0.32
12 13 0.68
ACGTcount: A:0.30, C:0.09, G:0.09, T:0.52
Consensus pattern (12 bp):
TTAGTCATTTAA
Found at i:52984871 original size:19 final size:19
Alignment explanation
Indices: 52984849--52984925 Score: 66
Period size: 19 Copynumber: 3.9 Consensus size: 19
52984839 AAGGAGTAGT
*
52984849 TTTTCATTTGATTTAAAAA
1 TTTTCATTCGATTTAAAAA
* *
52984868 TTTTCAATT-TATTTAAAAC
1 TTTTC-ATTCGATTTAAAAA
* *
52984887 TGTTCCATTCGATTTTAAAAT
1 T-TTTCATTCGA-TTTAAAAA
*
52984908 TTTTCACTCGATTTAAAA
1 TTTTCATTCGATTTAAAA
52984926 CTATTTCACA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
19 24 0.51
20 15 0.32
21 8 0.17
ACGTcount: A:0.34, C:0.12, G:0.05, T:0.49
Consensus pattern (19 bp):
TTTTCATTCGATTTAAAAA
Found at i:52984918 original size:20 final size:20
Alignment explanation
Indices: 52984895--52984968 Score: 78
Period size: 21 Copynumber: 3.6 Consensus size: 20
52984885 ACTGTTCCAT
52984895 TCGATTTTAAAATTTTTCAC
1 TCGATTTTAAAATTTTTCAC
*
52984915 TCGA-TTTAAAACTATTTCAC
1 TCGATTTTAAAA-TTTTTCAC
* *
52984935 ACGATTTTATAATTGTTTCAC
1 TCGATTTTAAAATT-TTTCAC
* *
52984956 TTGAGTTTAAAAT
1 TCGATTTTAAAAT
52984969 ACTTGAAGTG
Statistics
Matches: 43, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
19 7 0.16
20 15 0.35
21 21 0.49
ACGTcount: A:0.32, C:0.14, G:0.08, T:0.46
Consensus pattern (20 bp):
TCGATTTTAAAATTTTTCAC
Found at i:52984940 original size:40 final size:40
Alignment explanation
Indices: 52984860--52984967 Score: 117
Period size: 40 Copynumber: 2.6 Consensus size: 40
52984850 TTTCATTTGA
* * * * **
52984860 TTTAAAAATTTTCAATTTATTTAAAACTGTTCCATTCGAT
1 TTTAAAATTTTTCACTTGATTTAAAACTATTCCACACGAT
* *
52984900 TTTAAAATTTTTCACTCGATTTAAAACTATTTCACACGAT
1 TTTAAAATTTTTCACTTGATTTAAAACTATTCCACACGAT
*
52984940 TTTATAATTGTTTCACTTGAGTTTAAAA
1 TTTAAAATT-TTTCACTTGA-TTTAAAA
52984968 TACTTGAAGT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 40 0.71
41 9 0.16
42 7 0.12
ACGTcount: A:0.34, C:0.13, G:0.06, T:0.46
Consensus pattern (40 bp):
TTTAAAATTTTTCACTTGATTTAAAACTATTCCACACGAT
Found at i:52984953 original size:21 final size:20
Alignment explanation
Indices: 52984896--52984955 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 20
52984886 CTGTTCCATT
*
52984896 CGATTTTAAAATTTTTCACT
1 CGATTTTAAAATTTTTCACA
*
52984916 CGA-TTTAAAACTATTTCACA
1 CGATTTTAAAA-TTTTTCACA
*
52984936 CGATTTTATAATTGTTTCAC
1 CGATTTTAAAATT-TTTCAC
52984956 TTGAGTTTAA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
19 7 0.21
20 14 0.42
21 12 0.36
ACGTcount: A:0.32, C:0.17, G:0.07, T:0.45
Consensus pattern (20 bp):
CGATTTTAAAATTTTTCACA
Found at i:52986445 original size:16 final size:18
Alignment explanation
Indices: 52986412--52986451 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
52986402 ATGGAATTAG
*
52986412 AATTTGATTGAGGAAATT
1 AATTTAATTGAGGAAATT
52986430 -ATTTAATTGA-GAAATT
1 AATTTAATTGAGGAAATT
52986446 AATTTA
1 AATTTA
52986452 TTTTGGGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.42, C:0.00, G:0.15, T:0.42
Consensus pattern (18 bp):
AATTTAATTGAGGAAATT
Found at i:52990661 original size:4 final size:4
Alignment explanation
Indices: 52990652--52990697 Score: 65
Period size: 4 Copynumber: 11.5 Consensus size: 4
52990642 TTTCAATTCA
* * *
52990652 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATGC ATGC ATGC ATAC AT
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT
52990698 GCAGACATGA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:52990698 original size:8 final size:8
Alignment explanation
Indices: 52990652--52990706 Score: 65
Period size: 8 Copynumber: 6.9 Consensus size: 8
52990642 TTTCAATTCA
*
52990652 ATACATAC
1 ATACATGC
*
52990660 ATACATAC
1 ATACATGC
*
52990668 ATACATAC
1 ATACATGC
52990676 ATACATGC
1 ATACATGC
*
52990684 ATGCATGC
1 ATACATGC
52990692 ATACATGC
1 ATACATGC
*
52990700 AGACATG
1 ATACATG
52990707 ATTACTGCTT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 43 1.00
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.24
Consensus pattern (8 bp):
ATACATGC
Found at i:52991139 original size:49 final size:50
Alignment explanation
Indices: 52991036--52991144 Score: 134
Period size: 49 Copynumber: 2.2 Consensus size: 50
52991026 GGCTATTCAG
* * *
52991036 GATGGTAGAATATCAAAACAGTGAAAGCCATTGTTATCTGGCCATCCGAA
1 GATGGTAGAATATCAAAACAGTGAAAACCATTATTATCTGGCAATCCGAA
* * *
52991086 -ATGGTAGAATATCGAAATAGTGAAAACCATTATTGT-TGGGCAATCC-AA
1 GATGGTAGAATATCAAAACAGTGAAAACCATTATTATCT-GGCAATCCGAA
52991134 GATGGTAGAAT
1 GATGGTAGAAT
52991145 TTGTAAATTG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
48 3 0.06
49 48 0.94
ACGTcount: A:0.38, C:0.14, G:0.23, T:0.26
Consensus pattern (50 bp):
GATGGTAGAATATCAAAACAGTGAAAACCATTATTATCTGGCAATCCGAA
Found at i:52999614 original size:57 final size:58
Alignment explanation
Indices: 52999467--52999607 Score: 248
Period size: 57 Copynumber: 2.4 Consensus size: 58
52999457 GACATTCCCC
* * *
52999467 TGTTTGATTTAAGGGTGATTGTTTGATTGTATTAACATTTTTTTTCTAACCGAATAGG
1 TGTTTGATTTAAGGGTGATTGTTTGATTGAATTAACATGTTTTTTCTAACCCAATAGG
52999525 TGTTTGATTTAAGGGTGATTGTTTGATTGAATTAACA-GTTTTTTCTAACCCAATAGG
1 TGTTTGATTTAAGGGTGATTGTTTGATTGAATTAACATGTTTTTTCTAACCCAATAGG
52999582 TGTTTGATTTAAGGGTGATTGTTTGA
1 TGTTTGATTTAAGGGTGATTGTTTGA
52999608 AAGAATTGAG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
57 44 0.55
58 36 0.45
ACGTcount: A:0.24, C:0.06, G:0.23, T:0.47
Consensus pattern (58 bp):
TGTTTGATTTAAGGGTGATTGTTTGATTGAATTAACATGTTTTTTCTAACCCAATAGG
Found at i:53000037 original size:13 final size:11
Alignment explanation
Indices: 53000009--53000038 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
52999999 AATATTTTAC
53000009 ATTTTTTTTGA
1 ATTTTTTTTGA
53000020 ATTTTATTTTGA
1 ATTTT-TTTTGA
53000032 ATTTTTT
1 ATTTTTT
53000039 GAGTGGCAGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.20, C:0.00, G:0.07, T:0.73
Consensus pattern (11 bp):
ATTTTTTTTGA
Found at i:53004012 original size:61 final size:61
Alignment explanation
Indices: 53003958--53004145 Score: 165
Period size: 61 Copynumber: 3.1 Consensus size: 61
53003948 TTATAGTATT
53003958 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
1 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
* * * * * * * *
53004019 ATATATT-TTA-ATTAAAATATATTTAATATTA-ATTATTTCAA-ATT-A-TATTTTA-TAGTAT
1 ATATATTATGATTTTAGAA-A-A-TTCATATAAGAATATTT-AATATTAAGAATTTTATTA-AAT
53004077 C
61 C
* * * * *
53004078 ATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
53004139 ATATATT
1 ATATATT
53004146 TTAATTAAAA
Statistics
Matches: 94, Mismatches: 21, Indels: 24
0.68 0.15 0.17
Matches are distributed among these distances:
58 10 0.11
59 30 0.32
60 8 0.09
61 35 0.37
62 11 0.12
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.48
Consensus pattern (61 bp):
ATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAATC
Found at i:53004033 original size:120 final size:120
Alignment explanation
Indices: 53003893--53004180 Score: 472
Period size: 120 Copynumber: 2.4 Consensus size: 120
53003883 AGTATGATGA
*
53003893 TAAATTATATATTATT-ATTAAATTATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
1 TAAATTATATATT-TTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTAT
* * *
53003957 TATATATTATGATTTTAGAAAATTCATATAAGAATATTTAATATTAAGAATTTTAT
65 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTAT
* *
53004013 TAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGTAT
1 TAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTTTATAGTAT
* *
53004077 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTAT
65 CATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTAT
53004133 TAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
1 TAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAA
53004181 ATATGATTAA
Statistics
Matches: 155, Mismatches: 10, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
119 4 0.03
120 149 0.96
121 2 0.01
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (120 bp):
TAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTTATAGTATC
ATATATTATGATTTGAGAAAATTCATATAAGAATATTGAATATTAAGAATTTTAT
Found at i:53004154 original size:18 final size:17
Alignment explanation
Indices: 53004126--53004160 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
53004116 ATTATTAAGA
*
53004126 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
53004143 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
53004161 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:53004404 original size:45 final size:44
Alignment explanation
Indices: 53004305--53004414 Score: 140
Period size: 45 Copynumber: 2.6 Consensus size: 44
53004295 TTTTCCTTTA
53004305 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* ***
53004344 TACTATTACACCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
53004389 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
53004415 CCTCTATTCC
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
39 17 0.28
40 1 0.02
44 16 0.27
45 26 0.43
ACGTcount: A:0.33, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:53004414 original size:16 final size:16
Alignment explanation
Indices: 53004393--53004446 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
53004383 TTGATTTGCT
53004393 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
53004409 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
* *
53004425 ATTACGCCTCTAATCC
1 ATTACACCTCTATTCC
*
53004441 AATACA
1 ATTACA
53004447 GCGAACCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.30, C:0.35, G:0.02, T:0.33
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:53005363 original size:34 final size:31
Alignment explanation
Indices: 53005300--53005368 Score: 77
Period size: 32 Copynumber: 2.1 Consensus size: 31
53005290 TTTTTTAAGT
53005300 TTTTTTAAAAATAATTTTTATATAATTATAAA
1 TTTTTTAAAAATAATTTTTATATAATTAT-AA
* *
53005332 TTTTTTGAAAA-AATATTTTATAATATTTTATAA
1 TTTTTTAAAAATAAT-TTTTAT-ATA-ATTATAA
53005365 TTTT
1 TTTT
53005369 ATTTTGAATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
31 3 0.09
32 16 0.50
33 9 0.28
34 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.01, T:0.57
Consensus pattern (31 bp):
TTTTTTAAAAATAATTTTTATATAATTATAA
Found at i:53005920 original size:14 final size:14
Alignment explanation
Indices: 53005897--53005930 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
53005887 TGGTATGAGT
53005897 TTAT-GGGTTTTGG
1 TTATAGGGTTTTGG
53005910 TTATAGGGTTTTGG
1 TTATAGGGTTTTGG
*
53005924 TTGTAGG
1 TTATAGG
53005931 CAAATGATGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 4 0.21
14 15 0.79
ACGTcount: A:0.12, C:0.00, G:0.38, T:0.50
Consensus pattern (14 bp):
TTATAGGGTTTTGG
Found at i:53006085 original size:24 final size:25
Alignment explanation
Indices: 53006058--53006105 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
53006048 AGAAGAAAGT
53006058 TTAAAGAACATAAAA-GAAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAAA
** *
53006082 TTAAATTACTTAAAACGAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAA
53006106 TATGGGGATC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.19
Consensus pattern (25 bp):
TTAAAGAACATAAAACGAAAAAAAA
Found at i:53010137 original size:77 final size:77
Alignment explanation
Indices: 53010010--53010164 Score: 310
Period size: 77 Copynumber: 2.0 Consensus size: 77
53010000 TAGCTATTAG
53010010 AACTCTACTTTTGCACCTTTTTTGATTTAGTCATTTTTGCTAAATATTAAAAAATAAAAAATATA
1 AACTCTACTTTTGCACCTTTTTTGATTTAGTCATTTTTGCTAAATATTAAAAAATAAAAAATATA
53010075 TTTTGTGTTTAT
66 TTTTGTGTTTAT
53010087 AACTCTACTTTTGCACCTTTTTTGATTTAGTCATTTTTGCTAAATATTAAAAAATAAAAAATATA
1 AACTCTACTTTTGCACCTTTTTTGATTTAGTCATTTTTGCTAAATATTAAAAAATAAAAAATATA
53010152 TTTTGTGTTTAT
66 TTTTGTGTTTAT
53010164 A
1 A
53010165 TTGATTTAAA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.48
Consensus pattern (77 bp):
AACTCTACTTTTGCACCTTTTTTGATTTAGTCATTTTTGCTAAATATTAAAAAATAAAAAATATA
TTTTGTGTTTAT
Found at i:53011025 original size:267 final size:267
Alignment explanation
Indices: 53010550--53011078 Score: 1058
Period size: 267 Copynumber: 2.0 Consensus size: 267
53010540 AAAATTAACA
53010550 GGTAACCAGACACTATTATTTTCACCTGTATATTGAGATCTTTTACGAGGTTTCATCAGGTAAAA
1 GGTAACCAGACACTATTATTTTCACCTGTATATTGAGATCTTTTACGAGGTTTCATCAGGTAAAA
53010615 TTTTGATTGAAGAATGAGAGATATGTCATTTGAGATTGGTTATGTGGCTAGTTGTGTTGGGTTTT
66 TTTTGATTGAAGAATGAGAGATATGTCATTTGAGATTGGTTATGTGGCTAGTTGTGTTGGGTTTT
53010680 GAGATCTAAATTGGCTTGATTGGAAATGAAGATGATTATGGTTATTCATATGATTGAAATCAAAG
131 GAGATCTAAATTGGCTTGATTGGAAATGAAGATGATTATGGTTATTCATATGATTGAAATCAAAG
53010745 CTTTGTATATTAATGTTGTGGTTTGAATCTTGATATGTATATTTGTATTTATAATGATTTATATG
196 CTTTGTATATTAATGTTGTGGTTTGAATCTTGATATGTATATTTGTATTTATAATGATTTATATG
53010810 TGTAATG
261 TGTAATG
53010817 GGTAACCAGACACTATTATTTTCACCTGTATATTGAGATCTTTTACGAGGTTTCATCAGGTAAAA
1 GGTAACCAGACACTATTATTTTCACCTGTATATTGAGATCTTTTACGAGGTTTCATCAGGTAAAA
53010882 TTTTGATTGAAGAATGAGAGATATGTCATTTGAGATTGGTTATGTGGCTAGTTGTGTTGGGTTTT
66 TTTTGATTGAAGAATGAGAGATATGTCATTTGAGATTGGTTATGTGGCTAGTTGTGTTGGGTTTT
53010947 GAGATCTAAATTGGCTTGATTGGAAATGAAGATGATTATGGTTATTCATATGATTGAAATCAAAG
131 GAGATCTAAATTGGCTTGATTGGAAATGAAGATGATTATGGTTATTCATATGATTGAAATCAAAG
53011012 CTTTGTATATTAATGTTGTGGTTTGAATCTTGATATGTATATTTGTATTTATAATGATTTATATG
196 CTTTGTATATTAATGTTGTGGTTTGAATCTTGATATGTATATTTGTATTTATAATGATTTATATG
53011077 TG
261 TG
53011079 AATAGAAATT
Statistics
Matches: 262, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
267 262 1.00
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (267 bp):
GGTAACCAGACACTATTATTTTCACCTGTATATTGAGATCTTTTACGAGGTTTCATCAGGTAAAA
TTTTGATTGAAGAATGAGAGATATGTCATTTGAGATTGGTTATGTGGCTAGTTGTGTTGGGTTTT
GAGATCTAAATTGGCTTGATTGGAAATGAAGATGATTATGGTTATTCATATGATTGAAATCAAAG
CTTTGTATATTAATGTTGTGGTTTGAATCTTGATATGTATATTTGTATTTATAATGATTTATATG
TGTAATG
Found at i:53013065 original size:18 final size:18
Alignment explanation
Indices: 53013033--53013098 Score: 62
Period size: 17 Copynumber: 3.6 Consensus size: 18
53013023 CCCCGATAGA
*
53013033 GGTTTTTATTATTATTTTT
1 GGTTTTT-TTTTTATTTTT
53013052 GGTTTTTTTTTTATTTTT
1 GGTTTTTTTTTTATTTTT
* * *
53013070 TG-ATTTTTTTAATTTTT
1 GGTTTTTTTTTTATTTTT
*
53013087 TGTTTATTTTTT
1 GGTTT-TTTTTT
53013099 GCCTCCACTG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
17 15 0.38
18 12 0.30
19 13 0.32
ACGTcount: A:0.12, C:0.00, G:0.09, T:0.79
Consensus pattern (18 bp):
GGTTTTTTTTTTATTTTT
Found at i:53013065 original size:21 final size:19
Alignment explanation
Indices: 53013035--53013088 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 19
53013025 CCGATAGAGG
*
53013035 TTTTTATTATTA-TTTTTGG
1 TTTTT-TTATTATTTTTTGA
*
53013054 TTTTTTTTTTATTTTTTGA
1 TTTTTTTATTATTTTTTGA
53013073 TTTTTTTA--ATTTTTTG
1 TTTTTTTATTATTTTTTG
53013089 TTTATTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
17 8 0.26
18 5 0.16
19 18 0.58
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (19 bp):
TTTTTTTATTATTTTTTGA
Found at i:53016016 original size:12 final size:12
Alignment explanation
Indices: 53015999--53016041 Score: 50
Period size: 12 Copynumber: 3.6 Consensus size: 12
53015989 AAATGACAAT
*
53015999 ATAATAATAACA
1 ATAATAACAACA
53016011 ATAATAACAACA
1 ATAATAACAACA
* *
53016023 ACAACAACAACA
1 ATAATAACAACA
*
53016035 ACAATAA
1 ATAATAA
53016042 ATATAACACT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.67, C:0.19, G:0.00, T:0.14
Consensus pattern (12 bp):
ATAATAACAACA
Found at i:53017799 original size:13 final size:13
Alignment explanation
Indices: 53017781--53017805 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
53017771 ACACTTAAAG
53017781 CAATTTGTGGTAA
1 CAATTTGTGGTAA
53017794 CAATTTGTGGTA
1 CAATTTGTGGTA
53017806 CGAGAATAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.08, G:0.24, T:0.40
Consensus pattern (13 bp):
CAATTTGTGGTAA
Found at i:53028177 original size:598 final size:599
Alignment explanation
Indices: 53026951--53028224 Score: 2244
Period size: 598 Copynumber: 2.1 Consensus size: 599
53026941 TCAATTATCT
* * * * * *
53026951 GGTCAGGTTCCATCTTCCATCTTCAAAATTTCTTTTCTGAAGATTATTGATCTCTCCAGCAATAG
1 GGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAGCAATAG
*
53027016 CCTATCAGGTAGTTTGCCTAATGATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACCTGA
66 CCTATCAGGTAGTTTGCCTAATAATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACCTGA
53027081 GTTGGAATGAATTATCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTTAAAAATTTG
131 GTTGGAATGAATTATCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTTAAAAATTTG
* *
53027146 TCATTGTCCCGTAATCAATTTATGGGGATCATTCCAAGAAGTATTGGAAATCTAACACGACTCCA
196 TCATTGTCCCGTAATCAATTGACGGGGATCATTCCAAGAAGTATTGGAAATCTAACACGACTCCA
* *
53027211 GGAATTATATTTGGGGTTTAATAATCTAGAAGGTAATCAATTTCCTTGATTTCTTGAATTTAAAG
261 GGAATTATATTTGGGGTTTAATAATCTAAAAGGTAATCAATTTCCTTGATTTCTTGAACTTAAAG
*
53027276 TATGTTTTTTTTATAAAAGAGTTTGATTTGTAATAGATAACAAAAGGAAAAACTTTTAATTTTAT
326 TATGTTTTTTTTATAAAAGAGTTTGATTTGTAATAGATAACAAAAGGAAAAACTTTTAATTTCAT
53027341 TTGATGAAAAACATATGCTGAAATATATTAAAATCTAACATCTCCAAATTACTGTAGAACAGAAA
391 TTGATGAAAAACATATGCTGAAATATATTAAAATCTAACATCTCCAAATTACTGTAGAACAGAAA
* *
53027406 AGAAAACCTCTTTGACTTATGCTAACAAAATAGGTAGTTTGACACCTTGATTTTTCGATTATGTG
456 AGAAAACCCCTTTGACTTATGCTAACAAAATAGGTAGTTTGACACCTTGATTTTTCGACTATGTG
53027471 TGCAGGTCAAATTCCTGAGGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTAATATTGTAGCAA
521 TGCAGGTCAAATTCCTGAGGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTAATATTGTAGCAA
53027536 TTAAAGGCCTTACA
586 TTAAAGGCCTTACA
* * *
53027550 GGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGGCTATTAATCTCTCCAACAATAG
1 GGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAGCAATAG
* *
53027615 TCTATCAGGTAGTTTGCCTAATAATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACTTGA
66 CCTATCAGGTAGTTTGCCTAATAATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACCTGA
*
53027680 GTTTGAATGAATTATCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTTAAAAATTTG
131 GTTGGAATGAATTATCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTTAAAAATTTG
* **
53027745 TCATTGTCCTGTAATCAATTGACGGGGATCATTCCAAGAAGTATTGGAAATCTAACACGACTCTG
196 TCATTGTCCCGTAATCAATTGACGGGGATCATTCCAAGAAGTATTGGAAATCTAACACGACTCCA
*
53027810 GGAATTATATTTGGGGTTTAATAATCTAAAAGGTAATCAATTTTCTTGATTTCTTGAACTTAAAG
261 GGAATTATATTTGGGGTTTAATAATCTAAAAGGTAATCAATTTCCTTGATTTCTTGAACTTAAAG
*
53027875 TAT-TTTTTTTTATAAAAGAGTTTGATTTGTAATAGATAACAAAAGGAAAAACTTTTTATTTCAT
326 TATGTTTTTTTTATAAAAGAGTTTGATTTGTAATAGATAACAAAAGGAAAAACTTTTAATTTCAT
* *
53027939 TTGATGAAAAACATATGCTGAAATATATTAAAATCTAGCATCTCCAAATTACTGTAGAATAGAAA
391 TTGATGAAAAACATATGCTGAAATATATTAAAATCTAACATCTCCAAATTACTGTAGAACAGAAA
*
53028004 AGGAAACCCCTTTGACTTATGCTAACAAAATAGGTAGTTTGACACCTTGATTTTTCGACTATGTG
456 AGAAAACCCCTTTGACTTATGCTAACAAAATAGGTAGTTTGACACCTTGATTTTTCGACTATGTG
* *
53028069 TGCAGGTCAAATTCCTGAGGAAATCGGTAATCTTCTTGGTTTGGAACTGCTTAGTATTGTAGCAA
521 TGCAGGTCAAATTCCTGAGGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTAATATTGTAGCAA
53028134 TTAAAGGCCTTACA
586 TTAAAGGCCTTACA
* * *
53028148 GGTCATATTCCAACTTTGATCTTCAACATTTCTTCTCTGAAGACCATTGATCTCTCCAGCAATAG
1 GGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAGCAATAG
53028213 CCTATCAGGTAG
66 CCTATCAGGTAG
53028225 ATCTCTCCAA
Statistics
Matches: 638, Mismatches: 37, Indels: 1
0.94 0.05 0.00
Matches are distributed among these distances:
598 331 0.52
599 307 0.48
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35
Consensus pattern (599 bp):
GGTCAGATTCCAACTTCGATCTTCAACATTTCTTCTCTGAAGACTATTGATCTCTCCAGCAATAG
CCTATCAGGTAGTTTGCCTAATAATATGTGTCAACATCTTCCCAAGCTTGAAGGGCTTTACCTGA
GTTGGAATGAATTATCTGGTAACATTCCATTTGGCATGGGCAAATGCAACAACCTTAAAAATTTG
TCATTGTCCCGTAATCAATTGACGGGGATCATTCCAAGAAGTATTGGAAATCTAACACGACTCCA
GGAATTATATTTGGGGTTTAATAATCTAAAAGGTAATCAATTTCCTTGATTTCTTGAACTTAAAG
TATGTTTTTTTTATAAAAGAGTTTGATTTGTAATAGATAACAAAAGGAAAAACTTTTAATTTCAT
TTGATGAAAAACATATGCTGAAATATATTAAAATCTAACATCTCCAAATTACTGTAGAACAGAAA
AGAAAACCCCTTTGACTTATGCTAACAAAATAGGTAGTTTGACACCTTGATTTTTCGACTATGTG
TGCAGGTCAAATTCCTGAGGAAATCGGTAATCTTCTTGGTTTGGAAATGCTTAATATTGTAGCAA
TTAAAGGCCTTACA
Found at i:53028230 original size:28 final size:28
Alignment explanation
Indices: 53028196--53028252 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 28
53028186 GAAGACCATT
*
53028196 GATCTCTCCAGCAATAGCCTATCAGGTA
1 GATCTCTCCAACAATAGCCTATCAGGTA
53028224 GATCTCTCCAACAATAGCCTATCAGGTA
1 GATCTCTCCAACAATAGCCTATCAGGTA
53028252 G
1 G
53028253 TTTGCCTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.25
Consensus pattern (28 bp):
GATCTCTCCAACAATAGCCTATCAGGTA
Found at i:53029834 original size:20 final size:20
Alignment explanation
Indices: 53029806--53029870 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
53029796 TAAATAATAC
*
53029806 AATTATTAAAAATTGTTAGA
1 AATTTTTAAAAATTGTTAGA
* *
53029826 AATTTTTAAATATTG-TAAA
1 AATTTTTAAAAATTGTTAGA
* *
53029845 AATTTATAAAAAATTTATTAGA
1 AATTT-TTAAAAA-TTGTTAGA
53029867 AATT
1 AATT
53029871 ATAAAAGACG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
19 8 0.23
20 18 0.51
21 2 0.06
22 7 0.20
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (20 bp):
AATTTTTAAAAATTGTTAGA
Found at i:53029849 original size:19 final size:20
Alignment explanation
Indices: 53029806--53029856 Score: 59
Period size: 19 Copynumber: 2.6 Consensus size: 20
53029796 TAAATAATAC
* *
53029806 AATTATTAAAAATTGTTAGA
1 AATTTTTAAAAATTGTTAAA
*
53029826 AATTTTTAAATATTG-TAAA
1 AATTTTTAAAAATTGTTAAA
*
53029845 AATTTATAAAAA
1 AATTTTTAAAAA
53029857 ATTTATTAGA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 13 0.50
20 13 0.50
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (20 bp):
AATTTTTAAAAATTGTTAAA
Found at i:53036896 original size:18 final size:18
Alignment explanation
Indices: 53036873--53036916 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 18
53036863 GTGTATGAAC
*
53036873 AAATATAT-TTTATATTAA
1 AAATATATATTTATA-AAA
53036891 AAATATATATTTATAAAA
1 AAATATATATTTATAAAA
53036909 AAATATAT
1 AAATATAT
53036917 GTAAAAGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
18 18 0.75
19 6 0.25
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATATATATTTATAAAA
Found at i:53036907 original size:16 final size:18
Alignment explanation
Indices: 53036873--53036916 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 18
53036863 GTGTATGAAC
*
53036873 AAATATATTTTATATTAA
1 AAATATATATTATATTAA
53036891 AAATATATATT-TA-TAA
1 AAATATATATTATATTAA
*
53036907 AAAAATATAT
1 AAATATATAT
53036917 GTAAAAGATC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 12 0.50
17 2 0.08
18 10 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATATATATTATATTAA
Found at i:53038364 original size:23 final size:24
Alignment explanation
Indices: 53038310--53038366 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 24
53038300 AAAAATTGGT
* * *
53038310 TATATATATATGTTTTTCATATAT
1 TATATATATATGTTTTTCAAAAAA
53038334 TATA-ATATATG-TTTTCAAAAAA
1 TATATATATATGTTTTTCAAAAAA
53038356 TATATATATAT
1 TATATATATAT
53038367 AAACTACAGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.41
23 13 0.45
24 4 0.14
ACGTcount: A:0.42, C:0.04, G:0.04, T:0.51
Consensus pattern (24 bp):
TATATATATATGTTTTTCAAAAAA
Found at i:53053084 original size:18 final size:17
Alignment explanation
Indices: 53053044--53053087 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
53053034 TTAAAATTTT
* *
53053044 GTTTATAATTTTTTTAT
1 GTTTTTAATTTTTTTAA
53053061 GATTTTTAATATTTTTTAA
1 G-TTTTTAAT-TTTTTTAA
53053080 GTTTTTAA
1 GTTTTTAA
53053088 AAGGGATTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 1 0.04
18 14 0.61
19 8 0.35
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (17 bp):
GTTTTTAATTTTTTTAA
Found at i:53059242 original size:22 final size:23
Alignment explanation
Indices: 53059217--53059262 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
53059207 CTTTCCTTTC
53059217 CTATTTTATAAAAT-AATTTAAA
1 CTATTTTATAAAATAAATTTAAA
53059239 CTATTTTATAAAATAGAATTTAAA
1 CTATTTTATAAAATA-AATTTAAA
53059263 AAAAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 14 0.64
24 8 0.36
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.43
Consensus pattern (23 bp):
CTATTTTATAAAATAAATTTAAA
Found at i:53070498 original size:22 final size:24
Alignment explanation
Indices: 53070473--53070526 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 24
53070463 TTTGTTTCTT
*
53070473 TTTTTTTTCTTCTTTGC-A-TTGG
1 TTTTTTTTCTTCTTTGCAATTTGA
* *
53070495 TTTTTTTTTTTTTTTGCAATTTGA
1 TTTTTTTTCTTCTTTGCAATTTGA
53070519 TTTTTTTT
1 TTTTTTTT
53070527 AAAAGTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
22 15 0.56
23 1 0.04
24 11 0.41
ACGTcount: A:0.07, C:0.07, G:0.09, T:0.76
Consensus pattern (24 bp):
TTTTTTTTCTTCTTTGCAATTTGA
Done.