genome.fa.s18.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  162  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53070471--53070526	23	2.4	23	85	8	69	7	7	8	76	1.15
53071002--53071064	29	2.3	27	82	15	76	69	1	3	25	1.12
53071200--53071254	18	2.9	18	81	5	65	61	0	1	36	1.06
53071265--53071289	11	2.3	11	100	0	50	56	0	0	44	0.99
53071416--53071472	20	2.9	19	75	10	60	59	5	3	31	1.36
53071465--53071505	16	2.3	19	84	16	61	70	2	0	26	0.99
53071861--53071913	10	5.4	10	80	8	56	32	1	1	64	1.15
53076426--53077296	44	19.8	44	67	14	358	29	24	18	27	1.98
53076355--53077318	132	7.3	132	94	0	1572	29	24	18	27	1.98
53079125--53079186	8	7.9	8	77	10	65	0	16	1	82	0.75
53079125--53079200	16	4.4	17	74	14	66	0	17	1	81	0.76
53092438--53092479	19	2.2	18	84	16	50	23	2	7	66	1.28
53098538--53098617	20	3.8	22	73	6	60	40	20	27	12	1.88
53103779--53103833	28	2.0	28	88	0	83	27	23	21	27	1.99
53104223--53104593	27	13.7	27	80	8	337	19	18	18	43	1.88
53104204--53104593	54	7.2	53	81	8	380	18	18	18	43	1.89
53104223--53104593	81	4.6	80	79	6	381	19	18	18	43	1.88
53107231--53107347	28	4.2	28	82	4	141	29	21	23	25	1.99
53107764--53108323	27	20.7	27	78	8	498	20	18	16	44	1.87
53113884--53114484	297	2.0	298	98	0	1168	28	16	18	35	1.93
53120231--53120270	19	2.0	20	85	4	55	40	7	7	45	1.61
53120829--53121434	44	13.7	44	75	8	444	28	19	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53121901--53121935	16	2.2	16	100	0	70	28	5	5	60	1.43
53122541--53122582	13	3.4	13	83	9	61	61	0	7	30	1.22
53123988--53124018	9	3.4	9	90	0	53	25	12	22	38	1.90
53124070--53124106	9	4.1	9	85	0	56	48	13	8	29	1.71
53128344--53129809	624	2.4	624	95	0	2641	33	15	16	33	1.91
53131152--53131222	10	7.3	10	78	9	67	56	0	4	39	1.19
53131147--53131233	40	2.2	39	79	4	93	57	1	5	35	1.30
53134865--53134972	54	2.0	54	98	0	207	28	22	19	29	1.98
53138001--53138038	17	2.4	16	83	12	51	65	2	0	31	1.06
53139379--53139454	32	2.4	32	86	2	100	52	2	5	39	1.38
53141234--53141336	50	2.1	50	87	3	145	29	22	30	18	1.97
53143958--53143996	20	2.0	20	84	0	51	56	0	5	38	1.22
53145227--53145259	17	1.9	17	93	0	57	0	3	24	72	0.98
53145747--53145930	44	4.2	45	84	5	193	28	23	19	28	1.98
53145773--53146118	44	7.9	43	78	5	313	27	21	19	30	1.98
53145772--53146122	132	2.7	130	76	9	354	27	21	19	31	1.98
53146127--53146527	45	9.0	45	75	8	352	30	24	16	28	1.97
53146137--53146529	134	2.9	132	83	6	445	30	25	16	27	1.97
53146651--53146916	44	6.0	44	76	5	230	24	22	22	30	1.99
53146639--53146903	89	3.0	90	80	5	272	24	21	23	30	1.99
53146651--53146916	133	2.0	134	83	3	340	24	22	22	30	1.99
53152667--53152809	74	2.0	72	85	2	196	34	16	18	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53154081--53154118	20	1.9	20	84	10	51	71	0	10	18	1.14
53154527--53154560	17	2.0	17	94	0	59	0	2	29	67	1.05
53161370--53161420	3	16.7	3	81	4	57	39	1	1	56	1.22
53161762--53161814	12	4.1	12	81	13	61	39	1	3	54	1.29
53168923--53169037	57	2.0	57	100	0	230	40	10	8	40	1.70
53175138--53175200	32	2.0	32	83	0	81	50	6	6	36	1.53
53184973--53185016	18	2.5	17	82	10	52	27	0	6	65	1.17
53190757--53190878	30	4.1	30	80	10	135	33	23	3	39	1.71
53191473--53191518	20	2.4	19	81	3	56	65	0	34	0	0.93
53191844--53191879	19	1.9	18	88	5	54	25	2	2	69	1.15
53192101--53192145	21	2.1	21	88	8	65	48	8	4	37	1.55
53192387--53192501	17	6.5	18	74	16	80	31	13	10	45	1.77
53192387--53192942	35	15.3	33	67	21	140	31	13	9	45	1.76
53192382--53192501	18	6.8	16	73	19	71	30	13	10	45	1.78
53192446--53192698	76	3.4	72	76	14	269	30	13	7	48	1.70
53192568--53192712	18	7.8	18	70	13	64	26	12	7	53	1.65
53192570--53192612	21	2.0	21	81	0	50	18	9	9	62	1.51
53192559--53192708	56	2.7	55	73	18	123	29	12	7	51	1.66
53192605--53192691	38	2.4	37	79	11	99	31	14	6	47	1.71
53192727--53192764	20	2.0	20	89	5	60	39	13	7	39	1.73
53192631--53192805	93	1.9	92	82	8	221	33	12	9	44	1.75
53192796--53192837	18	2.3	19	84	8	52	33	14	7	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53192760--53192904	52	2.8	52	77	9	127	29	15	12	42	1.83
53192652--53192942	17	16.3	17	71	11	147	31	13	11	42	1.80
53192885--53192944	19	3.2	19	85	4	77	36	15	10	38	1.80
53204723--53205275	75	7.3	75	83	8	602	27	17	19	35	1.94
53205645--53205810	29	5.7	29	73	9	97	33	21	4	40	1.73
53205619--53205782	30	5.5	29	74	7	107	34	21	3	40	1.71
53206445--53206526	11	7.4	10	74	16	65	73	0	25	1	0.91
53206445--53206540	10	8.6	11	70	20	58	73	1	22	2	0.99
53206445--53206527	27	3.1	26	77	14	73	73	0	25	1	0.90
53206990--53207033	20	2.1	21	87	4	63	50	11	2	36	1.51
53207288--53207894	17	33.4	18	68	16	220	31	14	10	44	1.78
53207495--53207538	18	2.5	17	85	7	61	34	15	6	43	1.74
53207508--53207894	35	10.9	35	71	14	195	31	14	11	42	1.81
53207575--53207894	52	6.0	51	70	16	181	31	14	12	41	1.82
53207591--53207865	19	15.3	19	68	12	83	33	14	11	41	1.82
53228955--53228995	21	2.0	21	85	9	57	65	9	2	21	1.34
53228977--53229042	27	2.5	26	83	7	89	60	9	0	30	1.27
53230952--53231018	24	2.8	24	81	0	62	44	14	13	26	1.83
53233552--53233593	20	2.1	20	100	0	84	23	9	9	57	1.60
53250590--53250655	21	2.9	22	75	13	62	1	31	0	66	1.01
53250585--53250649	17	3.3	20	80	14	66	1	30	0	67	1.00
53250634--53250664	6	5.2	6	92	0	53	0	45	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53253199--53253244	19	2.4	19	85	3	56	32	13	15	39	1.85
53255003--53255032	15	2.0	15	100	0	60	26	20	13	40	1.89
53261359--53261385	2	13.5	2	100	0	54	0	48	0	51	1.00
53262961--53262991	16	1.9	16	93	0	53	0	0	9	90	0.46
53270778--53270812	17	2.1	17	100	0	70	31	11	17	40	1.85
53270919--53271168	83	3.0	83	94	0	437	26	17	10	46	1.80
53282706--53282754	21	2.2	23	82	7	57	40	2	0	57	1.10
53286306--53286346	21	2.0	21	90	0	64	19	29	21	29	1.98
53300444--53300507	30	2.1	30	88	5	94	57	1	3	37	1.24
53301140--53301208	31	2.2	31	82	5	77	31	14	10	43	1.79
53306972--53307009	18	2.1	18	85	9	51	15	15	7	60	1.57
53306997--53307097	12	7.8	12	70	15	60	24	13	9	51	1.72
53307040--53307118	24	3.2	25	80	10	74	27	15	10	46	1.77
53307004--53307117	25	4.5	24	74	12	86	26	14	8	50	1.72
53307075--53307125	25	2.0	25	81	7	59	33	15	5	45	1.71
53310431--53310468	18	2.1	19	90	5	60	50	7	0	42	1.31
53313003--53313058	28	2.0	29	86	6	80	48	5	7	39	1.54
53313393--53313432	21	1.9	21	89	0	62	30	17	10	42	1.82
53314688--53314752	11	5.6	11	74	18	53	44	1	1	52	1.19
53314784--53314847	12	5.1	13	74	22	57	50	0	1	48	1.10
53314764--53314822	31	1.9	31	85	0	82	50	0	1	47	1.11
53318241--53318287	16	2.8	18	75	18	64	17	14	21	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53318023--53318452	231	1.9	231	96	0	797	24	12	24	37	1.91
53318543--53318569	14	1.9	14	100	0	54	51	7	18	22	1.70
53323095--53323129	9	3.9	9	88	0	52	45	0	2	51	1.16
53323335--53323376	18	2.3	18	84	11	59	35	2	0	61	1.09
53325785--53325809	12	2.1	12	100	0	50	24	48	0	28	1.52
53328043--53328079	12	3.0	13	76	15	51	43	0	0	56	0.99
53344743--53344777	3	11.7	3	100	0	70	34	0	0	65	0.93
53345501--53346139	313	2.1	308	81	6	727	33	11	11	44	1.76
53355611--53355796	43	4.3	44	80	8	138	27	22	22	27	1.99
53355653--53355796	43	3.4	43	83	12	147	27	21	22	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199