Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 173 of 199
Found at i:55754633 original size:133 final size:133
Alignment explanation
Indices: 55754472--55755719 Score: 2103
Period size: 133 Copynumber: 9.4 Consensus size: 133
55754462 GGGTTTTTAA
* *
55754472 TTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATT
1 TTTAATT-AAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATT
55754537 AGGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAG
65 AGGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAG
*
55754602 AGTT
130 GGTT
55754606 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
1 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
55754671 GGTTAGGTTAGGGTTAGGG-TTTTAATT-AGTAGGG-TTAGGGTTTTTAATTTAATTAAATTAGG
66 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
55754733 GTT
131 GTT
55754736 TTTAATTAAGTA-GGTTAGGG-TTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
1 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
55754799 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGG-TTTTAATTTAATTAAATTAGG
66 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
*
55754863 TTT
131 GTT
55754866 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
1 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
*
55754931 GGTTAGGTTAGGGTTAAGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
66 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
55754996 GTT
131 GTT
*
55754999 TTTAATTAAGTAGGGTTAGGATTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
1 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
55755064 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
66 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
55755129 GTT
131 GTT
55755132 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
1 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
55755197 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
66 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
55755262 GTT
131 GTT
55755265 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
1 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
**
55755330 AATTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
66 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
55755395 GTT
131 GTT
55755398 TTTAATTAAGTAGGGTTA-GGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
1 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
** *
55755462 AATTAGGTTAGGGTTATGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
66 GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
55755527 G-T
131 GTT
*
55755529 TTTAATTAAATAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
1 TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
* * *
55755594 ----A-ATTA-GGTTAGGGTTTTTAATTTAAGTAGGTTAGGTTAGGGTTTTTAATTTAATAAAAT
66 GGTTAGGTTAGGGTTAGGGTTTTTAA-TTAAGTAGG---GTTTAGGGTTTTTAATTTAATTAAAT
*
55755653 AAGGTTAGGTT
127 TA-G---GGTT
* *
55755664 TTTAATTAAATTAGGTTAGGTTAGGGTTTTTAATTTAATT-AAATTAGGTTAGGGTT
1 TTTAATT-AAGTA-G---GGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTT
55755720 AGGGTTTTTA
Statistics
Matches: 1073, Mismatches: 20, Indels: 37
0.95 0.02 0.03
Matches are distributed among these distances:
126 14 0.01
127 12 0.01
128 63 0.06
129 16 0.01
130 109 0.10
131 40 0.04
132 250 0.23
133 510 0.48
134 9 0.01
135 8 0.01
136 4 0.00
137 1 0.00
139 15 0.01
140 22 0.02
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.47
Consensus pattern (133 bp):
TTTAATTAAGTAGGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTA
GGTTAGGTTAGGGTTAGGGTTTTTAATTAAGTAGGGTTTAGGGTTTTTAATTTAATTAAATTAGG
GTT
Found at i:55754718 original size:22 final size:21
Alignment explanation
Indices: 55754682--55754763 Score: 94
Period size: 22 Copynumber: 3.8 Consensus size: 21
55754672 GTTAGGTTAG
55754682 GGTTAGGGTTTTAATT-AGTA
1 GGTTAGGGTTTTAATTAAGTA
*
55754702 GGGTTAGGGTTTTTAATTTAATTA
1 -GGTTAGGG-TTTTAA-TTAAGTA
**
55754726 AATTAGGGTTTTTAATTAAGTA
1 GGTTAGGG-TTTTAATTAAGTA
55754748 GGTTAGGGTTTTAATT
1 GGTTAGGGTTTTAATT
55754764 TAATTAAAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
21 16 0.31
22 18 0.35
23 15 0.29
24 3 0.06
ACGTcount: A:0.27, C:0.00, G:0.26, T:0.48
Consensus pattern (21 bp):
GGTTAGGGTTTTAATTAAGTA
Found at i:55754760 original size:44 final size:44
Alignment explanation
Indices: 55754684--55754771 Score: 144
Period size: 44 Copynumber: 2.0 Consensus size: 44
55754674 TAGGTTAGGG
55754684 TTAGGGTTTTAATTAGTAGGGTTAGGGTTTTTAATTTAATTAAA
1 TTAGGGTTTTAATTAGTAGGGTTAGGGTTTTTAATTTAATTAAA
55754728 TTAGGGTTTTTAATTAAGTA-GGTTAGGG-TTTTAATTTAATTAAA
1 TTAGGG-TTTTAATT-AGTAGGGTTAGGGTTTTTAATTTAATTAAA
55754772 ATAAGGTTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
44 22 0.52
45 16 0.38
46 4 0.10
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.48
Consensus pattern (44 bp):
TTAGGGTTTTAATTAGTAGGGTTAGGGTTTTTAATTTAATTAAA
Found at i:55754766 original size:22 final size:22
Alignment explanation
Indices: 55754682--55754805 Score: 108
Period size: 23 Copynumber: 5.3 Consensus size: 22
55754672 GTTAGGTTAG
55754682 GGTTAGGG-TTTTAATT-AGTA
1 GGTTAGGGTTTTTAATTAAGTA
*
55754702 GGGTTAGGGTTTTTAATTTAATTA
1 -GGTTAGGGTTTTTAA-TTAAGTA
**
55754726 AATTAGGGTTTTTAATTAAGTA
1 GGTTAGGGTTTTTAATTAAGTA
*
55754748 GGTTAGGGTTTTAATTTAATTAAAATAA
1 GGTTAGGG--TT--TTTAATT-AAGT-A
*
55754776 GGTTAGGGTTTTTAATTTAATTA
1 GGTTAGGGTTTTTAA-TTAAGTA
55754799 GGTTAGG
1 GGTTAGG
55754806 TTAGGGTTAG
Statistics
Matches: 85, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
21 8 0.09
22 18 0.21
23 23 0.27
24 13 0.15
25 2 0.02
26 9 0.11
27 3 0.04
28 9 0.11
ACGTcount: A:0.30, C:0.00, G:0.24, T:0.46
Consensus pattern (22 bp):
GGTTAGGGTTTTTAATTAAGTA
Found at i:55755014 original size:17 final size:18
Alignment explanation
Indices: 55754981--55755015 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
55754971 GGGTTTTTAA
*
55754981 TTTAATTAAATTAGGGTT
1 TTTAATTAAAGTAGGGTT
55754999 TTTAATT-AAGTAGGGTT
1 TTTAATTAAAGTAGGGTT
55755016 AGGATTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (18 bp):
TTTAATTAAAGTAGGGTT
Found at i:55755147 original size:17 final size:18
Alignment explanation
Indices: 55755114--55755148 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
55755104 GGGTTTTTAA
*
55755114 TTTAATTAAATTAGGGTT
1 TTTAATTAAAGTAGGGTT
55755132 TTTAATT-AAGTAGGGTT
1 TTTAATTAAAGTAGGGTT
55755149 AGGGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (18 bp):
TTTAATTAAAGTAGGGTT
Found at i:55755280 original size:17 final size:18
Alignment explanation
Indices: 55755247--55755281 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
55755237 GGGTTTTTAA
*
55755247 TTTAATTAAATTAGGGTT
1 TTTAATTAAAGTAGGGTT
55755265 TTTAATT-AAGTAGGGTT
1 TTTAATTAAAGTAGGGTT
55755282 AGGGTTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (18 bp):
TTTAATTAAAGTAGGGTT
Found at i:55755413 original size:17 final size:18
Alignment explanation
Indices: 55755380--55755414 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
55755370 GGGTTTTTAA
*
55755380 TTTAATTAAATTAGGGTT
1 TTTAATTAAAGTAGGGTT
55755398 TTTAATT-AAGTAGGGTT
1 TTTAATTAAAGTAGGGTT
55755415 AGGTTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (18 bp):
TTTAATTAAAGTAGGGTT
Found at i:55755544 original size:16 final size:17
Alignment explanation
Indices: 55755512--55755545 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
55755502 GGGTTTTTAA
55755512 TTTAATTAAATTAGGGT
1 TTTAATTAAATTAGGGT
55755529 TTTAATTAAA-TAGGGT
1 TTTAATTAAATTAGGGT
55755545 T
1 T
55755546 AGGGTTTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.41
17 10 0.59
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.47
Consensus pattern (17 bp):
TTTAATTAAATTAGGGT
Found at i:55755667 original size:22 final size:22
Alignment explanation
Indices: 55755642--55755685 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
55755632 GGGTTTTTAA
55755642 TTTAATAAAATAAGGTTAGGTT
1 TTTAATAAAATAAGGTTAGGTT
* *
55755664 TTTAATTAAATTAGGTTAGGTT
1 TTTAATAAAATAAGGTTAGGTT
55755686 AGGGTTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (22 bp):
TTTAATAAAATAAGGTTAGGTT
Found at i:55755740 original size:23 final size:23
Alignment explanation
Indices: 55755713--55755801 Score: 117
Period size: 23 Copynumber: 3.8 Consensus size: 23
55755703 TAAATTAGGT
55755713 TAGGGTTAGGGTTTTTAATTAAG
1 TAGGGTTAGGGTTTTTAATTAAG
*
55755736 TAGGGTTTAGGGTTTTTAATTTAAT
1 TAGGG-TTAGGGTTTTTAA-TTAAG
**
55755761 TA-AATTAGGGTTTTTAATTAAG
1 TAGGGTTAGGGTTTTTAATTAAG
*
55755783 CAGGGTTAGGGTTTTTAAT
1 TAGGGTTAGGGTTTTTAAT
55755802 CAAATAATGT
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
22 5 0.09
23 32 0.57
24 13 0.23
25 6 0.11
ACGTcount: A:0.27, C:0.01, G:0.26, T:0.46
Consensus pattern (23 bp):
TAGGGTTAGGGTTTTTAATTAAG
Found at i:55758200 original size:22 final size:22
Alignment explanation
Indices: 55758170--55758211 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
55758160 ATTTGGAGAT
*
55758170 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
55758192 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
55758212 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:55758232 original size:52 final size:51
Alignment explanation
Indices: 55758161--55758263 Score: 129
Period size: 52 Copynumber: 2.0 Consensus size: 51
55758151 TTAATATGGA
* * *
55758161 TTTGGAGATTTTTTGAAGGAAATTGAGAG-GATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTT-GAAGGGAA-TTGAGAG
*
55758212 TTTGAGAGAATTTTGGAAGGAAATTGATAGAAATTTTGAAGGGAATTGAGAG
1 TTTG-GAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
55758264 AAATTTAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
51 4 0.09
52 32 0.71
53 9 0.20
ACGTcount: A:0.35, C:0.00, G:0.32, T:0.33
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAAGGAAATTGAGAGAAATTTTGAAGGGAATTGAGAG
Found at i:55758238 original size:22 final size:22
Alignment explanation
Indices: 55758213--55758302 Score: 94
Period size: 22 Copynumber: 4.1 Consensus size: 22
55758203 ATTTGAGAGT
55758213 TTGAGAG-AATTTTGGAAGGAAA
1 TTGAGAGAAATTTT-GAAGGAAA
* *
55758235 TTGATAGAAATTTTGAAGGGAA
1 TTGAGAGAAATTTTGAAGGAAA
**
55758257 TTGAGAGAAATTTAAAAAGG-AA
1 TTGAGAGAAATTT-TGAAGGAAA
* *
55758279 TTGAGAGAATTTTTGAAAGAAA
1 TTGAGAGAAATTTTGAAGGAAA
55758301 TT
1 TT
55758303 AATATTGAAT
Statistics
Matches: 56, Mismatches: 9, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
21 3 0.05
22 43 0.77
23 10 0.18
ACGTcount: A:0.44, C:0.00, G:0.26, T:0.30
Consensus pattern (22 bp):
TTGAGAGAAATTTTGAAGGAAA
Found at i:55766443 original size:105 final size:105
Alignment explanation
Indices: 55766299--55766512 Score: 250
Period size: 105 Copynumber: 2.0 Consensus size: 105
55766289 ACTATAGGTA
** *
55766299 ACAACATTAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCT-CAGCTTCAGAGACCA
1 ACAACATTAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATAT-CTACAGCTTCAGAAACCA
* *
55766363 TCCCTTCCTTGCAATGCGCATCAACCAATGTACCATACGTG
65 TCCCTTCCTTGCAAAGAGCATCAACCAATGTACCATACGTG
* * * *** * * *
55766404 ACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAATGGTCTCTACAGCTTTAGAAATCAT
1 ACAACATTAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCTACAGCTTCAGAAACCAT
* * **
55766469 TCCTTCCTTGCAAAGAGCGTCAACCAATGTATTATACGTG
66 CCCTTCCTTGCAAAGAGCATCAACCAATGTACCATACGTG
55766509 ACAA
1 ACAA
55766513 TATCAAGTGA
Statistics
Matches: 90, Mismatches: 18, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
104 2 0.02
105 88 0.98
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (105 bp):
ACAACATTAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCTACAGCTTCAGAAACCAT
CCCTTCCTTGCAAAGAGCATCAACCAATGTACCATACGTG
Found at i:55768247 original size:21 final size:21
Alignment explanation
Indices: 55768221--55768275 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
55768211 AACAGCGGTG
*
55768221 GCGGTGAGATTAGTTACTATA
1 GCGGTGAGATTAGGTACTATA
* *
55768242 GCGGTGAGATTAGGTATTGTA
1 GCGGTGAGATTAGGTACTATA
*
55768263 GCAGTGAGATTAG
1 GCGGTGAGATTAG
55768276 AAATAGCGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.27, C:0.07, G:0.35, T:0.31
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTATA
Found at i:55768883 original size:68 final size:68
Alignment explanation
Indices: 55768771--55768899 Score: 222
Period size: 68 Copynumber: 1.9 Consensus size: 68
55768761 CAAAGGAGGC
* * *
55768771 CTTAGTCTTATTTAACTCAGCAAACTCAGCAGCTCCAATTACCCCCATTAACCCCATCGCCAAGC
1 CTTAGTCTTATTTAACTCAGCAAACACAACAGCTCCAATGACCCCCATTAACCCCATCGCCAAGC
55768836 AGA
66 AGA
*
55768839 CTTAGTCTTATTTAACTCAGCAAACACAACAGCTCCAATGACCCCCATTAATCCCATCGCC
1 CTTAGTCTTATTTAACTCAGCAAACACAACAGCTCCAATGACCCCCATTAACCCCATCGCC
55768900 CTTGAGCTTC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 57 1.00
ACGTcount: A:0.31, C:0.36, G:0.09, T:0.24
Consensus pattern (68 bp):
CTTAGTCTTATTTAACTCAGCAAACACAACAGCTCCAATGACCCCCATTAACCCCATCGCCAAGC
AGA
Found at i:55769607 original size:13 final size:13
Alignment explanation
Indices: 55769571--55769609 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
55769561 AATCACATTT
55769571 AATATTTTTTA-A
1 AATATTTTTTATA
55769583 AATATTTTTTTATA
1 AATA-TTTTTTATA
*
55769597 AATATATTTTATA
1 AATATTTTTTATA
55769610 CATAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
12 4 0.17
13 15 0.62
14 5 0.21
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
AATATTTTTTATA
Found at i:55771690 original size:37 final size:36
Alignment explanation
Indices: 55771641--55771711 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
55771631 GGATGGGATG
* * *
55771641 AATATTATTTTATTGAAAATAT-TGTTGAATTTTTT
1 AATATTATTTTATAGAAAAAATATATTGAATTTTTT
55771676 AATATATATATTTATAGAAAAAATATATTGAATTTT
1 AATAT-TAT-TTTATAGAAAAAATATATTGAATTTT
55771712 AAGTTTTCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
35 5 0.17
36 3 0.10
37 12 0.40
38 10 0.33
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.51
Consensus pattern (36 bp):
AATATTATTTTATAGAAAAAATATATTGAATTTTTT
Found at i:55773932 original size:105 final size:105
Alignment explanation
Indices: 55773772--55774000 Score: 262
Period size: 105 Copynumber: 2.2 Consensus size: 105
55773762 ACCATTAACT
* * * *
55773772 AATGCACTATAGGTAACAACATTAGGCTCAATGCCTCGCTTTATCATTGCATCAACAATATCCT-
1 AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCATCAACAATAT-CTA
* * *
55773836 CAGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
65 CAGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
* * * ** * *
55773877 AATGTACTATACGTGACAACATCAGGCTCAATGCCTTGCTTTCTTATTGTGTCAACGATCTCTAC
1 AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCATCAACAATATCTAC
* *** *
55773942 AGCTTTAGAAATTGTTCCTTCCTTGCAAAGAGCATCAACC
66 AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
*
55773982 AATGTATTATACGTGACAA
1 AATGTACTATACGTGACAA
55774001 TAATATTGTT
Statistics
Matches: 103, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
104 2 0.02
105 101 0.98
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (105 bp):
AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCATCAACAATATCTAC
AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
Found at i:55778680 original size:40 final size:39
Alignment explanation
Indices: 55778616--55778738 Score: 212
Period size: 39 Copynumber: 3.2 Consensus size: 39
55778606 AAATTAAAAC
55778616 AAAAAA-TAAAAAAGTATTTTAAAAATATTTTAAAATTT
1 AAAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTT
*
55778654 AAAAAATTAAAAAAGTATTTTAAAAAAATTTTAAAATTT
1 AAAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTT
*
55778693 AAAAAATTAAAAAAAGTATTTTAAAAGTATTTTAAAATTT
1 AAAAAATT-AAAAAAGTATTTTAAAAATATTTTAAAATTT
55778733 AAAAAA
1 AAAAAA
55778739 AAATAAAAAA
Statistics
Matches: 80, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
38 6 0.08
39 39 0.49
40 35 0.44
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (39 bp):
AAAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTT
Found at i:55780623 original size:13 final size:13
Alignment explanation
Indices: 55780605--55780634 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
55780595 TCAATGACGA
55780605 TGAAAGCTTATTG
1 TGAAAGCTTATTG
55780618 TGAAAGCTTATTG
1 TGAAAGCTTATTG
55780631 TGAA
1 TGAA
55780635 CAATGTTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (13 bp):
TGAAAGCTTATTG
Found at i:55784609 original size:36 final size:36
Alignment explanation
Indices: 55784568--55784766 Score: 238
Period size: 36 Copynumber: 5.3 Consensus size: 36
55784558 GGTAGCTTTA
55784568 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
55784604 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGAT-A-----AG---T
55784649 AGCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 -GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
55784686 GTTATACTTATCTGATCAAGTGAAAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
* *
55784722 GCTATACTTATCTGATCAAGTGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
*
55784758 GGTA-ACTTA
1 GCTACACTTA
55784767 GCTACACTTA
Statistics
Matches: 144, Mismatches: 9, Indels: 21
0.83 0.05 0.12
Matches are distributed among these distances:
35 5 0.03
36 101 0.70
37 2 0.01
40 2 0.01
42 2 0.01
45 2 0.01
46 30 0.21
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGTGAAAAAGTGATAAGT
Found at i:55784669 original size:82 final size:82
Alignment explanation
Indices: 55784532--55784722 Score: 337
Period size: 82 Copynumber: 2.3 Consensus size: 82
55784522 TTTGAGTACT
*
55784532 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
55784597 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
*
55784614 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
1 TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
* *
55784679 GATAAGTGTTATACTTA
66 GATAAGTGCTACACTTA
*
55784696 TCTGATCAAGTGAAAAAGTGATAAGTG
1 TCTGATCAAGAGAAAAAGTGATAAGTG
55784723 CTATACTTAT
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 104 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGAAAAAGT
GATAAGTGCTACACTTA
Found at i:55785800 original size:51 final size:51
Alignment explanation
Indices: 55785618--55786273 Score: 584
Period size: 51 Copynumber: 12.9 Consensus size: 51
55785608 ACTATTATCA
* * *
55785618 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AA-TTT
1 TTCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * *
55785667 TTACGGTTCACGTAATAGCCTTCACATAGTACTATACACGTGATC-AAG-TT
1 TT-CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * *
55785717 TTACGATTCACGTAGTAGTCTTCACATAGTACTACATACGTGACTAAAGCTT
1 TT-CGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * * *
55785769 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACC--ATCATT
1 TTCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGC-TT
* *
55785819 TATCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * ** * * * *
55785871 CTCGGTACATATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
* *
55785921 TATCGATTCATGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * ** * * * * * *
55785973 CTCGATGCATATTGTAGTCTTCACTTAATACTACACATGTGACCATTA--TT
1 TTCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
*
55786023 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * * * * *
55786075 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
*
55786125 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * * * * *
55786177 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
*
55786227 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAA
1 T-TCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAA
55786274 CACACAGTCC
Statistics
Matches: 480, Mismatches: 105, Indels: 43
0.76 0.17 0.07
Matches are distributed among these distances:
49 4 0.01
50 94 0.20
51 364 0.76
52 16 0.03
53 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.30
Consensus pattern (51 bp):
TTCGATTCACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
Found at i:55785850 original size:102 final size:102
Alignment explanation
Indices: 55785619--55786273 Score: 1003
Period size: 102 Copynumber: 6.4 Consensus size: 102
55785609 CTATTATCAT
* * * * * * * **
55785619 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AA-TTTTTACGGTTCACGTAA
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACACATTG
* * * * *
55785682 TAGCCTTCACATAGTACTATACACGTGATCAAGT-TTTA
65 TAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTA
* * * * * *
55785720 -CGATTCACGTAGTAGTCTTCACATAGTACTACATACGTGACTAAAGCTTTTCGGTACACATAGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
*
55785784 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
* *
55785821 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
55785886 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
* * * *
55785923 TCGATTCATGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGATGCATATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
* *
55785988 AGTCTTCACTTAATACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
55786025 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
55786090 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
55786127 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
55786192 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
55786229 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAA
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAA
55786274 CACACAGTCC
Statistics
Matches: 514, Mismatches: 36, Indels: 7
0.92 0.06 0.01
Matches are distributed among these distances:
100 39 0.08
101 40 0.08
102 435 0.85
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (102 bp):
TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
Found at i:55787224 original size:13 final size:13
Alignment explanation
Indices: 55787206--55787238 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
55787196 GCCCAAACGT
55787206 CGAAATTTTCGAA
1 CGAAATTTTCGAA
55787219 CGAAATTTTCGAA
1 CGAAATTTTCGAA
55787232 CGAAATT
1 CGAAATT
55787239 CTTAAAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30
Consensus pattern (13 bp):
CGAAATTTTCGAA
Found at i:55788925 original size:47 final size:49
Alignment explanation
Indices: 55788807--55788933 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 49
55788797 GTTTTTACAT
* * *
55788807 TGCCATAGTCCA-ACTATGGTCTTACATGTAATCACATATCACATACCGA
1 TGCCATAGTCCAGA-TATGGTCTTACACGGAATAACATATCACATACCGA
* * * *
55788856 TGCCATAGCCCAGCTATAGTCTTACACGGAATAACATATCACA-A-TGA
1 TGCCATAGTCCAGATATGGTCTTACACGGAATAACATATCACATACCGA
*
55788903 TGCCATATTCCAGATATGGTCTTACACGGAA
1 TGCCATAGTCCAGATATGGTCTTACACGGAA
55788934 ATTTCATAAT
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
47 29 0.44
48 1 0.02
49 36 0.55
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (49 bp):
TGCCATAGTCCAGATATGGTCTTACACGGAATAACATATCACATACCGA
Found at i:55791238 original size:51 final size:51
Alignment explanation
Indices: 55791056--55791813 Score: 648
Period size: 51 Copynumber: 14.9 Consensus size: 51
55791046 ACTATTATCA
* *
55791056 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AA-TTT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * *
55791105 TTACGGTTCACGTAATAGCCTTCACATAGTACTATACACGTGATC-AAG-TT
1 TT-CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * *
55791155 TTACGATTCACGTAGTAGTCTTCACATAGTACTACATACGTGACTAAAGCTT
1 TT-CGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * *
55791207 TTCGGTACACATAGTAGCCTTCACTTAGTACTACACATGTGACC--ATCATT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGC-TT
* * *
55791257 TATCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * * * *
55791309 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
* *
55791359 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * ** * * * * *
55791411 CTCGGTACATATTGTAGCCTTCACTTAGTACTACACATGTTACCATTA--TT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
* * *
55791461 TATCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGATCAAAGCTT
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * * * *
55791513 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
* * *
55791563 TATTGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * * * *
55791615 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
* * *
55791665 TATAGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTT
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
* * * * * * *
55791717 CTCGGTACACATTGTAGCCTTCACTTAGTACTACACATGTGACCATTA--TT
1 TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCA-AAGCTT
* * *
55791767 TATCGATTCACGTAGTAGCCTTCGCACAGTACTACACACGTGACCAA
1 T-TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAA
55791814 CACTTTCACT
Statistics
Matches: 553, Mismatches: 130, Indels: 51
0.75 0.18 0.07
Matches are distributed among these distances:
49 4 0.01
50 97 0.18
51 431 0.78
52 19 0.03
53 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (51 bp):
TTCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAAGCTT
Found at i:55791288 original size:102 final size:102
Alignment explanation
Indices: 55791057--55791813 Score: 1216
Period size: 102 Copynumber: 7.4 Consensus size: 102
55791047 CTATTATCAT
* * * * * * * **
55791057 TCGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATC-AA-TTTTTACGGTTCACGTAA
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCT-CGGTACACATTG
* * * * *
55791120 TAGCCTTCACATAGTACTATACACGTGATCAAGT-TTTA
65 TAGCCTTCACTTAGTACTACACATGTGA-CCATTATTTA
* * * * * *
55791158 -CGATTCACGTAGTAGTCTTCACATAGTACTACATACGTGACTAAAGCTTTTCGGTACACATAGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
*
55791222 AGCCTTCACTTAGTACTACACATGTGACCATCATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
55791259 TCAATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
55791324 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
55791361 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACATATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
*
55791426 AGCCTTCACTTAGTACTACACATGTTACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
55791463 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGATCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
55791528 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
55791565 TTGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
55791630 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
55791667 TAGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
55791732 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
66 AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
*
55791769 TCGATTCACGTAGTAGCCTTCGCACAGTACTACACACGTGACCAA
1 TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAA
55791814 CACTTTCACT
Statistics
Matches: 618, Mismatches: 34, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
100 39 0.06
101 40 0.06
102 539 0.87
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (102 bp):
TCGATTCACGTAGTAGCCTTCACACAGTACTACACACGTGACCAAAGCTTCTCGGTACACATTGT
AGCCTTCACTTAGTACTACACATGTGACCATTATTTA
Found at i:55791946 original size:12 final size:11
Alignment explanation
Indices: 55791920--55791944 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
55791910 AATCGGGAAA
55791920 TTTCTCATTTT
1 TTTCTCATTTT
55791931 TTTCTCATTTT
1 TTTCTCATTTT
55791942 TTT
1 TTT
55791945 TCACTAATCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.16, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTCTCATTTT
Found at i:55794581 original size:6 final size:6
Alignment explanation
Indices: 55794570--55794598 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
55794560 AAGGAGAGAA
55794570 GAAAAG GAAAAG GAAAAG GAAAAG GAAAA
1 GAAAAG GAAAAG GAAAAG GAAAAG GAAAA
55794599 ATTAGGGTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (6 bp):
GAAAAG
Found at i:55795736 original size:23 final size:23
Alignment explanation
Indices: 55795676--55795780 Score: 94
Period size: 23 Copynumber: 4.8 Consensus size: 23
55795666 TGCCGATCAA
* * *
55795676 GCACTATATGTGTTGTATATCAG
1 GCACTTTATGTGTCGTATTTCAG
* *
55795699 GAACTTTATGAGTCGTATTTCAG
1 GCACTTTATGTGTCGTATTTCAG
** *
55795722 GCACTCCATGTGTCG--TTTCAA
1 GCACTTTATGTGTCGTATTTCAG
*
55795743 GCACTTTATGTGTCGTA--TCAT
1 GCACTTTATGTGTCGTATTTCAG
55795764 GCAC-TTATGTGTCGTAT
1 GCACTTTATGTGTCGTAT
55795781 ACTGATCGGG
Statistics
Matches: 66, Mismatches: 13, Indels: 8
0.76 0.15 0.09
Matches are distributed among these distances:
20 12 0.18
21 25 0.38
23 29 0.44
ACGTcount: A:0.22, C:0.18, G:0.21, T:0.39
Consensus pattern (23 bp):
GCACTTTATGTGTCGTATTTCAG
Found at i:55795746 original size:21 final size:20
Alignment explanation
Indices: 55795729--55795778 Score: 73
Period size: 21 Copynumber: 2.5 Consensus size: 20
55795719 CAGGCACTCC
55795729 ATGTGTCGTTTCAAGCACTTT
1 ATGTGTCGTTTCAAGCAC-TT
* *
55795750 ATGTGTCGTATCATGCACTT
1 ATGTGTCGTTTCAAGCACTT
55795770 ATGTGTCGT
1 ATGTGTCGT
55795779 ATACTGATCG
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 11 0.41
21 16 0.59
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (20 bp):
ATGTGTCGTTTCAAGCACTT
Found at i:55796211 original size:19 final size:19
Alignment explanation
Indices: 55796184--55796220 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
55796174 GAAACGAGCT
*
55796184 ATTGAAATGAGATTGAAAA
1 ATTGAAATGAAATTGAAAA
*
55796203 ATTGCAATGAAATTGAAA
1 ATTGAAATGAAATTGAAA
55796221 TAGTGAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.51, C:0.03, G:0.19, T:0.27
Consensus pattern (19 bp):
ATTGAAATGAAATTGAAAA
Found at i:55801625 original size:105 final size:105
Alignment explanation
Indices: 55801508--55801768 Score: 387
Period size: 105 Copynumber: 2.5 Consensus size: 105
55801498 AATGACCATT
* * * * **
55801508 AACTAATATATTATAGGTAACAACATCAGGCTCGATTTCTCGCTTTATCATTGCGTCAACAATAT
1 AACTAATGTATTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATAT
55801573 CCTCAGCTTCAAAGACCATCCCTTCCTTGCAATGCGCATC
66 CCTCAGCTTCAAAGACCATCCCTTCCTTGCAATGCGCATC
55801613 AACTAATGTATTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATAT
1 AACTAATGTATTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATAT
* * *
55801678 CCTCAGCTTCAGAGACCATGCCTTCCTTGCAATGTGCATC
66 CCTCAGCTTCAAAGACCATCCCTTCCTTGCAATGCGCATC
* * * * * *
55801718 AACCATTGTAGTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCAT
1 AACTAATGTATTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCAT
55801769 CATGTCAACG
Statistics
Matches: 141, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
105 141 1.00
ACGTcount: A:0.28, C:0.27, G:0.14, T:0.31
Consensus pattern (105 bp):
AACTAATGTATTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATAT
CCTCAGCTTCAAAGACCATCCCTTCCTTGCAATGCGCATC
Found at i:55801791 original size:105 final size:105
Alignment explanation
Indices: 55801527--55801850 Score: 326
Period size: 105 Copynumber: 3.1 Consensus size: 105
55801517 ATTATAGGTA
* ** ** * *
55801527 ACAACATCAGGCTCGATTTCTCGCTTTATCATTGCGTCAACAATATCCTCAGCTTCAAAGACCAT
1 ACAACATCAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCCTAAGCTTCAGAGACCAT
* * *
55801592 CCCTTCCTTGCAATGCGCATCAACTAATGTATTATACGTG
66 CCCTTCCTTGCAATGAGCATCAACCAATGTAGTATACGTG
** *
55801632 ACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTCAGCTTCAGAGACCAT
1 ACAACATCAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCCTAAGCTTCAGAGACCAT
* * *
55801697 GCCTTCCTTGCAATGTGCATCAACCATTGTAGTATACGTG
66 CCCTTCCTTGCAATGAGCATCAACCAATGTAGTATACGTG
* * * * ** * * * * *
55801737 ACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACGGTCT-CTAAAGCTTTAGAAATCG
1 ACAACATCAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCCT-AAGCTTCAGAGACCA
* * * ** *
55801801 TTCCTTCCTTGCAAAGAGCATCAATCAATAAAGTATATGTG
65 TCCCTTCCTTGCAATGAGCATCAACCAATGTAGTATACGTG
*
55801842 ACAATATCA
1 ACAACATCA
55801851 AGTGAAATAT
Statistics
Matches: 185, Mismatches: 33, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
104 2 0.01
105 183 0.99
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.30
Consensus pattern (105 bp):
ACAACATCAGGCTCAATGCCTCGCTTTATCATCACGTCAACAATATCCTAAGCTTCAGAGACCAT
CCCTTCCTTGCAATGAGCATCAACCAATGTAGTATACGTG
Found at i:55810320 original size:11 final size:11
Alignment explanation
Indices: 55810304--55810328 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
55810294 TATGCGTGAG
55810304 TTTTTTATAAA
1 TTTTTTATAAA
55810315 TTTTTTATAAA
1 TTTTTTATAAA
55810326 TTT
1 TTT
55810329 AAATATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TTTTTTATAAA
Found at i:55815855 original size:105 final size:105
Alignment explanation
Indices: 55815720--55815948 Score: 280
Period size: 105 Copynumber: 2.2 Consensus size: 105
55815710 ACCATTAACT
* * * *
55815720 AATGTATTATAGGTAACAACATTAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCT-
1 AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATAT-CTA
* * *
55815784 CAGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
65 CAGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
* * * * ** *
55815825 AATGTACTATACGTGACAACATCGGGCTCAATGCCTTGCTTTCTCATTGTGTCAACGGTCTCTAC
1 AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCTAC
* * * *
55815890 AGCTTTAGAAATCGTTCCTTCCTTGCAAAGAGCATCAACC
66 AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
55815930 AATGTACTATACGTGACAA
1 AATGTACTATACGTGACAA
55815949 TATTAAGTGA
Statistics
Matches: 105, Mismatches: 18, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
104 2 0.02
105 103 0.98
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (105 bp):
AATGTACTATACGTGACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCTAC
AGCTTCAGAAACCATCCCTTCCTTGCAAAGAGCATCAACC
Found at i:55819270 original size:3 final size:3
Alignment explanation
Indices: 55819264--55819298 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
55819254 ACAGTAGTAG
55819264 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
55819299 GTAGTAGTAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:55825180 original size:8 final size:7
Alignment explanation
Indices: 55825163--55825215 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
55825153 GACAAACCCT
55825163 AACCTTA
1 AACCTTA
55825170 AACCTTTA
1 AACC-TTA
55825178 AACCCTTA
1 AA-CCTTA
*
55825186 AACCCTA
1 AACCTTA
*
55825193 AACCATA
1 AACCTTA
*
55825200 AACCATA
1 AACCTTA
55825207 AACCTTA
1 AACCTTA
55825214 AA
1 AA
55825216 AATATAAATC
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
7 29 0.71
8 10 0.24
9 2 0.05
ACGTcount: A:0.47, C:0.30, G:0.00, T:0.23
Consensus pattern (7 bp):
AACCTTA
Found at i:55825203 original size:14 final size:14
Alignment explanation
Indices: 55825156--55825215 Score: 68
Period size: 14 Copynumber: 4.2 Consensus size: 14
55825146 TTTAATTGAC
55825156 AAACCCT-AACCTT
1 AAACCCTAAACCTT
*
55825169 AAACCTTTAAACCCTT
1 AAACC-CTAAA-CCTT
*
55825185 AAACCCTAAACCAT
1 AAACCCTAAACCTT
*
55825199 AAACCATAAACCTT
1 AAACCCTAAACCTT
55825213 AAA
1 AAA
55825216 AATATAAATC
Statistics
Matches: 39, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
13 5 0.13
14 19 0.49
15 6 0.15
16 9 0.23
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.22
Consensus pattern (14 bp):
AAACCCTAAACCTT
Found at i:55825267 original size:22 final size:22
Alignment explanation
Indices: 55825242--55825419 Score: 82
Period size: 21 Copynumber: 8.2 Consensus size: 22
55825232 CCTAAACCCT
55825242 AAAAACACTAACCCTTAACTTA
1 AAAAACACTAACCCTTAACTTA
* * *
55825264 AAAATCAC-AAACCTTGAAC-CA
1 AAAAACACTAACCCTT-AACTTA
* * * *
55825285 TAAAACCCTAAACCCTTACCCTA
1 AAAAACACT-AACCCTTAACTTA
** *
55825308 AAAATTA-TAACCCTTTACTTA
1 AAAAACACTAACCCTTAACTTA
* * * *
55825329 AAAACCACAAACCCTAAACCT-
1 AAAAACACTAACCCTTAACTTA
* *
55825350 -AAAACCCTAAAACCTTAACTTA
1 AAAAACACT-AACCCTTAACTTA
* **
55825372 AAAACCAAAAACCC-TAACCTT-
1 AAAAACACTAACCCTTAA-CTTA
*
55825393 AAAAACCCTAAACCCTTAACTTA
1 AAAAACACT-AACCCTTAACTTA
55825416 AAAA
1 AAAA
55825420 CCCAAACCAT
Statistics
Matches: 107, Mismatches: 37, Indels: 23
0.64 0.22 0.14
Matches are distributed among these distances:
20 5 0.05
21 44 0.41
22 37 0.35
23 21 0.20
ACGTcount: A:0.49, C:0.30, G:0.01, T:0.20
Consensus pattern (22 bp):
AAAAACACTAACCCTTAACTTA
Found at i:55825306 original size:65 final size:63
Alignment explanation
Indices: 55825237--55825418 Score: 188
Period size: 65 Copynumber: 2.8 Consensus size: 63
55825227 TCAACCCTAA
* * * *
55825237 ACCCTAAAAACACTAACCCTTAACTTAAAAATCACAAACCTTGAACCATAAAACCCTAAACCCTT
1 ACCCTAAAAACA-TAACCCTTAACTTAAAAACCACAAACCCTAAACC-TAAAACCCTAAAACCTT
* *
55825302 ACCCTAAAAATTATAACCCTTTACTTAAAAACCACAAACCCTAAACCTAAAACCCTAAAACCTT
1 ACCCTAAAAA-CATAACCCTTAACTTAAAAACCACAAACCCTAAACCTAAAACCCTAAAACCTT
* * * * *
55825366 AACTTAAAAACCAAAAACCC-TAACCTTAAAAACC-CTAAACCCTTAACTTAAAA
1 ACCCTAAAAA-C-ATAACCCTTAA-CTTAAAAACCAC-AAACCCTAAACCTAAAA
55825419 ACCCAAACCA
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
64 27 0.27
65 71 0.72
66 1 0.01
ACGTcount: A:0.48, C:0.31, G:0.01, T:0.20
Consensus pattern (63 bp):
ACCCTAAAAACATAACCCTTAACTTAAAAACCACAAACCCTAAACCTAAAACCCTAAAACCTT
Found at i:55825351 original size:43 final size:40
Alignment explanation
Indices: 55825286--55825427 Score: 140
Period size: 43 Copynumber: 3.3 Consensus size: 40
55825276 CTTGAACCAT
* * *
55825286 AAAACCCTAAACCCTTACCCTAAAAATTATAACCCTTTACTTA
1 AAAACCC-AAACCC-TAACCTAAAAACTA-AACCCTTAACTTA
* *
55825329 AAAACCACAAACCCTAAACCTAAAACCCTAAAACCTTAACTTA
1 AAAACC-CAAACCCT-AACCTAAAA-ACTAAACCCTTAACTTA
*
55825372 AAAACCAAAAACCCTAACCTTAAAAACCCTAAACCCTTAACTTA
1 AAAACC-CAAACCCTAACC-TAAAAA--CTAAACCCTTAACTTA
55825416 AAAACCCAAACC
1 AAAACCCAAACC
55825428 ATTAACTATA
Statistics
Matches: 84, Mismatches: 9, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
42 5 0.06
43 55 0.65
44 24 0.29
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (40 bp):
AAAACCCAAACCCTAACCTAAAAACTAAACCCTTAACTTA
Found at i:55825406 original size:16 final size:16
Alignment explanation
Indices: 55825378--55825411 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 16
55825368 CTTAAAAACC
55825378 AAAAACCCTAA-CCTT
1 AAAAACCCTAACCCTT
55825393 AAAAACCCTAAACCCTT
1 AAAAACCCT-AACCCTT
55825410 AA
1 AA
55825412 CTTAAAAACC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 9 0.53
16 2 0.12
17 6 0.35
ACGTcount: A:0.50, C:0.32, G:0.00, T:0.18
Consensus pattern (16 bp):
AAAAACCCTAACCCTT
Found at i:55825420 original size:22 final size:22
Alignment explanation
Indices: 55825241--55825440 Score: 150
Period size: 22 Copynumber: 9.2 Consensus size: 22
55825231 CCCTAAACCC
*
55825241 TAAAAACACT-AACCCTTAACT
1 TAAAAACCCTAAACCCTTAACT
*
55825262 TAAAAATCAC-AAA-CCTTGAAC-
1 TAAAAA-CCCTAAACCCTT-AACT
* * *
55825283 CATAAAACCCTAAACCCTTACCC
1 TA-AAAACCCTAAACCCTTAACT
* *
55825306 TAAAAA--TTATAACCCTTTACT
1 TAAAAACCCTA-AACCCTTAACT
* *
55825327 TAAAAACCAC-AAACCCTAAACC
1 TAAAAACC-CTAAACCCTTAACT
*
55825349 T-AAAACCCTAAAACCTTAACT
1 TAAAAACCCTAAACCCTTAACT
**
55825370 TAAAAACCAAAAACCC-TAACCT
1 TAAAAACCCTAAACCCTTAA-CT
55825392 TAAAAACCCTAAACCCTTAACT
1 TAAAAACCCTAAACCCTTAACT
*
55825414 TAAAAACCC-AAACCATTAACT
1 TAAAAACCCTAAACCCTTAACT
55825435 ATAAAA
1 -TAAAA
55825441 CTTAAAAATC
Statistics
Matches: 142, Mismatches: 21, Indels: 31
0.73 0.11 0.16
Matches are distributed among these distances:
20 3 0.02
21 57 0.40
22 73 0.51
23 9 0.06
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.20
Consensus pattern (22 bp):
TAAAAACCCTAAACCCTTAACT
Found at i:55825433 original size:65 final size:66
Alignment explanation
Indices: 55825325--55825497 Score: 162
Period size: 65 Copynumber: 2.6 Consensus size: 66
55825315 TAACCCTTTA
* *
55825325 CTTAAAAACCAC-AAACCCTAAACCTAAAACCCTAAAACCTTAACT-TAAAAAC-CAAAAACCCT
1 CTTAAAAACC-CTAAACCCTTAACTTAAAACCC-AAAACCTTAACTAT-AAAACTCAAAAACCCT
55825387 -AAC
63 AAAC
* *
55825390 CTTAAAAACCCTAAACCCTTAACTTAAAAACCC-AAACCATTAACTATAAAACTTAAAAATCCTA
1 CTTAAAAACCCTAAACCCTTAACTT-AAAACCCAAAACC-TTAACTATAAAACTCAAAAACCCTA
55825454 AAC
64 AAC
** * * *
55825457 CTT--AAACCCTAAAATCTTAACTTTAAATCCATAACCCTTAA
1 CTTAAAAACCCTAAACCCTTAACTTAAAACCCA-AAACCTTAA
55825498 GTTAAATATA
Statistics
Matches: 91, Mismatches: 9, Indels: 16
0.78 0.08 0.14
Matches are distributed among these distances:
64 11 0.12
65 54 0.59
66 20 0.22
67 6 0.07
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (66 bp):
CTTAAAAACCCTAAACCCTTAACTTAAAACCCAAAACCTTAACTATAAAACTCAAAAACCCTAAA
C
Found at i:55825441 original size:43 final size:42
Alignment explanation
Indices: 55825316--55825441 Score: 146
Period size: 43 Copynumber: 2.9 Consensus size: 42
55825306 TAAAAATTAT
* * *
55825316 AACCCTTTACTTAAAAACCACAAACCCTAAACCTAAAACCCTA
1 AACCCTTAACTTAAAAACCACAAA-CCTTAACTTAAAACCCTA
* * *
55825359 AAACCTTAACTTAAAAACCAAAAACCCTAACCTTAAAAACCCTA
1 AACCCTTAACTTAAAAACCACAAACCTTAA-CTT-AAAACCCTA
55825403 AACCCTTAACTTAAAAACC-CAAACCATTAACTATAAAAC
1 AACCCTTAACTTAAAAACCACAAACC-TTAACT-TAAAAC
55825442 TTAAAAATCC
Statistics
Matches: 70, Mismatches: 9, Indels: 8
0.80 0.10 0.09
Matches are distributed among these distances:
42 4 0.06
43 35 0.50
44 31 0.44
ACGTcount: A:0.50, C:0.31, G:0.00, T:0.19
Consensus pattern (42 bp):
AACCCTTAACTTAAAAACCACAAACCTTAACTTAAAACCCTA
Found at i:55825718 original size:114 final size:114
Alignment explanation
Indices: 55825503--55825886 Score: 705
Period size: 114 Copynumber: 3.4 Consensus size: 114
55825493 CTTAAGTTAA
* *
55825503 ATATAATTTGATAATTCTACTAACCATTAATACAATTATCAGTTAATATTTTTTACATTCACATA
1 ATATAATTTGATAATTTTACTAACCATTAATACAATTATCAGTTAATA-TTTTTACGTTCACATA
55825568 ATGTTAGATTTGAAAACATGTTTTGACTGGTACTAACAAATAATAATTTG
65 ATGTTAGATTTGAAAACATGTTTTGACTGGTACTAACAAATAATAATTTG
55825618 ATATAATTTGATAATTTTACTAACCATTAATACAATTATCAGTTAATATTTTTACGTTCACATAA
1 ATATAATTTGATAATTTTACTAACCATTAATACAATTATCAGTTAATATTTTTACGTTCACATAA
55825683 TGTTAGATTTGAAAACATGTTTTGACTGGTACTAACAAATAATAATTTG
66 TGTTAGATTTGAAAACATGTTTTGACTGGTACTAACAAATAATAATTTG
55825732 ATATAATTTGATAATTTTACTAACCATTAATACAATTATCAGTTAATATTTTTACGTTCACATAA
1 ATATAATTTGATAATTTTACTAACCATTAATACAATTATCAGTTAATATTTTTACGTTCACATAA
* *
55825797 TGTTAGATTTGAAAACATGTTTTGATTGGTACTAACAATTAATAATTTG
66 TGTTAGATTTGAAAACATGTTTTGACTGGTACTAACAAATAATAATTTG
**
55825846 ATATAATTTGATAATTTTACTAAAAATTAATACAATTATCA
1 ATATAATTTGATAATTTTACTAACCATTAATACAATTATCA
55825887 ATAAATAGCC
Statistics
Matches: 263, Mismatches: 6, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
114 216 0.82
115 47 0.18
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.42
Consensus pattern (114 bp):
ATATAATTTGATAATTTTACTAACCATTAATACAATTATCAGTTAATATTTTTACGTTCACATAA
TGTTAGATTTGAAAACATGTTTTGACTGGTACTAACAAATAATAATTTG
Found at i:55829154 original size:125 final size:124
Alignment explanation
Indices: 55828910--55829186 Score: 423
Period size: 125 Copynumber: 2.2 Consensus size: 124
55828900 TACATGCTAT
*
55828910 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTATTCTCATAAAGCATCCTGCTAGA
1 TGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTATTCTCATAAAGCATCCTGCTAGA
*
55828975 AGCGATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTTTTGCCAGGACCAAC
66 AGCGATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATAATTTTT-CCAGGACCAAC
* * * *
55829035 TGTAGCAAAAGCGCGTCCATGAGGGCGCGATTTCAGAAATTCTTCTCA-AATAGCATCCTGCTTG
1 TGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTATTCTCATAA-AGCATCCTGCTAG
*
55829099 AAGCGTTTTTTATACTATTTGCTCAAAAACGTCAACTCGAAATAATTTCTT-CAGGACCAAC
65 AAGCG-ATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATAATTT-TTCCAGGACCAAC
* *
55829160 TATAGCAAAAGCGCGTCCACGTGGGCG
1 TGTAGCAAAAGCGCGTCCACGAGGGCG
55829187 AAGTCAGAAC
Statistics
Matches: 139, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
124 2 0.01
125 95 0.68
126 40 0.29
127 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (124 bp):
TGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTATTCTCATAAAGCATCCTGCTAGA
AGCGATTTTATACTATTTGCTCAAAAACGTCAACTCGAAATAATTTTTCCAGGACCAAC
Found at i:55829441 original size:2 final size:2
Alignment explanation
Indices: 55829436--55829471 Score: 54
Period size: 2 Copynumber: 18.0 Consensus size: 2
55829426 AAATTAATGT
* *
55829436 TA TA TA TA TA TA TA TA TA TA TA TA TT TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
55829472 ATAAAAAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:55832209 original size:21 final size:21
Alignment explanation
Indices: 55832183--55832235 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
55832173 AATTGTTTCT
*
55832183 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
55832204 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
55832225 AATCTCACCGC
1 AATCTCACCGC
55832236 CACCGCTGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.30, C:0.40, G:0.09, T:0.21
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:55836729 original size:33 final size:33
Alignment explanation
Indices: 55836692--55836758 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
55836682 CAGAAGTTAC
55836692 ACGGTTTGTGTCTTTGAGAGAGGAAAAAAAAGA
1 ACGGTTTGTGTCTTTGAGAGAGGAAAAAAAAGA
55836725 ACGGTTTGTGTCTTTGAGAGAGGAAAAAAAAGA
1 ACGGTTTGTGTCTTTGAGAGAGGAAAAAAAAGA
55836758 A
1 A
55836759 GGAAAGAAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.40, C:0.06, G:0.30, T:0.24
Consensus pattern (33 bp):
ACGGTTTGTGTCTTTGAGAGAGGAAAAAAAAGA
Found at i:55838445 original size:24 final size:20
Alignment explanation
Indices: 55838393--55838433 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
55838383 TATGCATGTG
*
55838393 TTAGTGTTTCTCGTATTAAT
1 TTAGTGTTTCTCATATTAAT
55838413 TTAGTGTTTCTCATATTAAT
1 TTAGTGTTTCTCATATTAAT
55838433 T
1 T
55838434 ATTCATGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.22, C:0.10, G:0.12, T:0.56
Consensus pattern (20 bp):
TTAGTGTTTCTCATATTAAT
Found at i:55839523 original size:18 final size:18
Alignment explanation
Indices: 55839500--55839576 Score: 55
Period size: 18 Copynumber: 4.3 Consensus size: 18
55839490 GGGTAGGATT
55839500 TGTATCTACATCTATATA
1 TGTATCTACATCTATATA
** ** *
55839518 TGTATCTGTATCTGCATC
1 TGTATCTACATCTATATA
* * *
55839536 TGTATCTGCACCTATATC
1 TGTATCTACATCTATATA
* * *
55839554 TGTATCTATATATGTATA
1 TGTATCTACATCTATATA
55839572 TGTAT
1 TGTAT
55839577 ATGTATATGT
Statistics
Matches: 44, Mismatches: 15, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 44 1.00
ACGTcount: A:0.26, C:0.17, G:0.12, T:0.45
Consensus pattern (18 bp):
TGTATCTACATCTATATA
Found at i:55839536 original size:12 final size:12
Alignment explanation
Indices: 55839500--55839560 Score: 59
Period size: 12 Copynumber: 5.1 Consensus size: 12
55839490 GGGTAGGATT
*
55839500 TGTATCTACATC
1 TGTATCTGCATC
* * *
55839512 TATATATGTATC
1 TGTATCTGCATC
55839524 TGTATCTGCATC
1 TGTATCTGCATC
*
55839536 TGTATCTGCACC
1 TGTATCTGCATC
* *
55839548 TATATCTGTATC
1 TGTATCTGCATC
55839560 T
1 T
55839561 ATATATGTAT
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.23, C:0.21, G:0.11, T:0.44
Consensus pattern (12 bp):
TGTATCTGCATC
Found at i:55839562 original size:12 final size:12
Alignment explanation
Indices: 55839509--55839570 Score: 61
Period size: 12 Copynumber: 5.2 Consensus size: 12
55839499 TTGTATCTAC
*
55839509 ATCTATATATGT
1 ATCTATATCTGT
* *
55839521 ATCTGTATCTGC
1 ATCTATATCTGT
* *
55839533 ATCTGTATCTGC
1 ATCTATATCTGT
*
55839545 ACCTATATCTGT
1 ATCTATATCTGT
*
55839557 ATCTATATATGT
1 ATCTATATCTGT
55839569 AT
1 AT
55839571 ATGTATATGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 42 1.00
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (12 bp):
ATCTATATCTGT
Found at i:55839571 original size:6 final size:6
Alignment explanation
Indices: 55839562--55839654 Score: 186
Period size: 6 Copynumber: 15.5 Consensus size: 6
55839552 TCTGTATCTA
55839562 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
55839610 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TAT
55839655 TTATATCTGT
Statistics
Matches: 87, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 87 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:55841491 original size:3 final size:3
Alignment explanation
Indices: 55841483--55841515 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
55841473 AAAGCACTTA
55841483 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
55841516 GGGCATGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:55841635 original size:40 final size:41
Alignment explanation
Indices: 55841579--55841672 Score: 104
Period size: 40 Copynumber: 2.3 Consensus size: 41
55841569 AAGAAAATAG
* *
55841579 ATAAAAATTATAAAATATAAAAA-TATATATGTATGTATAT
1 ATAAAAATTATAAAATACAAAAATTATATAAGTATGTATAT
* * * *
55841619 TTAAAATTTATTAAATACAAAAATTTATGTAAGTATGTATAT
1 ATAAAAATTATAAAATACAAAAA-TTATATAAGTATGTATAT
55841661 AT--AAATTATAAA
1 ATAAAAATTATAAA
55841673 TTATGAAATA
Statistics
Matches: 43, Mismatches: 9, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
40 27 0.63
42 16 0.37
ACGTcount: A:0.54, C:0.01, G:0.05, T:0.39
Consensus pattern (41 bp):
ATAAAAATTATAAAATACAAAAATTATATAAGTATGTATAT
Found at i:55841926 original size:19 final size:21
Alignment explanation
Indices: 55841881--55841930 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 21
55841871 TGTACGTATA
*
55841881 TATATATATTAGCAAAATATG
1 TATATATATTAGCAAAATACG
* *
55841902 TGTATATATT-GTAAAA-ACG
1 TATATATATTAGCAAAATACG
55841921 TATATATATT
1 TATATATATT
55841931 TAATGTGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 11 0.44
20 5 0.20
21 9 0.36
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (21 bp):
TATATATATTAGCAAAATACG
Found at i:55843691 original size:128 final size:127
Alignment explanation
Indices: 55843450--55843691 Score: 292
Period size: 128 Copynumber: 1.9 Consensus size: 127
55843440 ACTTCAATCC
* * * * * *
55843450 ACTCTGCTGCAACTTCAGGGACGAGATTTGTGGTTTTAGTCTGCTCCACTGTAACTTCAATGAGA
1 ACTCTACTGCAACTTCAGGGACAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAAGGAGA
* * *
55843515 TAGGATTGGATTCTTCTGTCTGATCCACTGCAACTTCAGGGAGATAAGACTGGATGCGATCT
66 TAGGATTGGATTCTTCTATCTGATCAACTGCAACTTCAGGGAAATAAGACTGGATGCGATCT
* * *
55843577 ACTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCTGCTCCGCTGCAAC-TCAGGGA
1 ACTCTACTGCAACTTCAG-G-GACAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAAGGA
* * *
55843641 GATAGGATTGGCTTCTTCTATCTGTTTAACTGCAA-TGTCA-GGAAATTAAGA
64 GATAGGATTGGATTCTTCTATCTGATCAACTGCAACT-TCAGGGAAA-TAAGA
55843692 TTCACCGTCG
Statistics
Matches: 96, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
127 22 0.23
128 44 0.46
129 30 0.31
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (127 bp):
ACTCTACTGCAACTTCAGGGACAAGATCTGTGGTTTTAATCTGCTCCACTGCAACTTCAAGGAGA
TAGGATTGGATTCTTCTATCTGATCAACTGCAACTTCAGGGAAATAAGACTGGATGCGATCT
Found at i:55843812 original size:50 final size:50
Alignment explanation
Indices: 55843655--55843911 Score: 127
Period size: 50 Copynumber: 5.2 Consensus size: 50
55843645 GGATTGGCTT
* * *** *
55843655 CTTCTATCTGTTTAACTGCAATGTCA-GGAAATTAAGATTCACCGTCGTAG
1 CTTCAATCT-TTTAATTGCAATGTCAGGGAAAACGAGATTCACCGTTGTAG
* * * ** * * *
55843705 CTTCACTCTATTTCACTGCACCG-CATGGGAATA--AGATTCGCCGTTGTGG
1 CTTCAATCT-TTTAATTGCAATGTCA-GGGAAAACGAGATTCACCGTTGTAG
*
55843754 CCTT-AATCTTTTAATTGCAATGTCGGGGAAAACGAGATTCACCGTTGTAG
1 -CTTCAATCTTTTAATTGCAATGTCAGGGAAAACGAGATTCACCGTTGTAG
**** ** * * * ** * *
55843804 CTTCAATCTGTTCCGCTGCACCGCCTGAGAAGTAA--A-ATTTGCTGTTGTGG
1 CTTCAATCT-TTTAATTGCAATGTCAGGGAA--AACGAGATTCACCGTTGTAG
*
55843854 CTTCAATCTTTTAATTGCAATGTCAGGG-AAGCGAGATTCACCGTTGTAG
1 CTTCAATCTTTTAATTGCAATGTCAGGGAAAACGAGATTCACCGTTGTAG
55843903 CTTCAATCT
1 CTTCAATCT
55843912 GTTCCACTGC
Statistics
Matches: 147, Mismatches: 47, Indels: 27
0.67 0.21 0.12
Matches are distributed among these distances:
46 1 0.01
48 17 0.12
49 52 0.35
50 58 0.39
51 17 0.12
53 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.33
Consensus pattern (50 bp):
CTTCAATCTTTTAATTGCAATGTCAGGGAAAACGAGATTCACCGTTGTAG
Found at i:55843889 original size:99 final size:99
Alignment explanation
Indices: 55843655--55843926 Score: 343
Period size: 99 Copynumber: 2.7 Consensus size: 99
55843645 GGATTGGCTT
* * ** * * * *
55843655 CTTCTATCTGTTTAACTGCAATGTCA-GGAAATTAAGATTCACCGTCGTAGCTTCACTCTATTTC
1 CTTCAATCT-TTTAATTGCAATGTCAGGGAAA-CGAGATTCACCGTTGTAGCTTCAATCTGTTCC
* *
55843719 ACTGCACCGCATGGGAATAAGATTCGCCGTTGTGGC
64 ACTGCACCGCATGAGAATAAAATTCGCCGTTGTGGC
* *
55843755 CTT-AATCTTTTAATTGCAATGTCGGGGAAAACGAGATTCACCGTTGTAGCTTCAATCTGTTCCG
1 CTTCAATCTTTTAATTGCAATGTCAGGG-AAACGAGATTCACCGTTGTAGCTTCAATCTGTTCCA
* * *
55843819 CTGCACCGCCTGAGAAGTAAAATTTGCTGTTGTGG-
65 CTGCACCGCATGAGAA-TAAAATTCGCCGTTGTGGC
*
55843854 CTTCAATCTTTTAATTGCAATGTCAGGGAAGCGAGATTCACCGTTGTAGCTTCAATCTGTTCCAC
1 CTTCAATCTTTTAATTGCAATGTCAGGGAAACGAGATTCACCGTTGTAGCTTCAATCTGTTCCAC
55843919 TGCACCGC
66 TGCACCGC
55843927 TTGGGAAATA
Statistics
Matches: 150, Mismatches: 18, Indels: 9
0.85 0.10 0.05
Matches are distributed among these distances:
98 14 0.09
99 92 0.61
100 44 0.29
ACGTcount: A:0.24, C:0.23, G:0.21, T:0.32
Consensus pattern (99 bp):
CTTCAATCTTTTAATTGCAATGTCAGGGAAACGAGATTCACCGTTGTAGCTTCAATCTGTTCCAC
TGCACCGCATGAGAATAAAATTCGCCGTTGTGGC
Found at i:55844094 original size:132 final size:132
Alignment explanation
Indices: 55843926--55844312 Score: 580
Period size: 132 Copynumber: 2.9 Consensus size: 132
55843916 CACTGCACCG
** *
55843926 CTTGGGAA-ATAAGATTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACA
1 CTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
* * * * *
55843990 ATCTTTGACCTATTCCAATACTGCTTATGGAGATAGGACTGGTGGCTTAAATCTGCTTC-CCTTC
66 ATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCTCC-AC
55844054 TAC
130 TAC
* * *
55844057 CTTGGGAAGATAAGATTCACCATTTTTGATCTACTCCACTACTGCTTAGGGAGACAGAATCTGCA
1 CTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
* ** *
55844122 ATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAATGGCTTAAATCTGCCTCTCCACT
66 ATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCTCCACT
*
55844187 AT
131 AC
*
55844189 CTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATTTGCA
1 CTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
* *
55844254 ATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACTGGTGGTTTAAATCTACTTC
66 ATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTC
55844313 GCCGTCAGTA
Statistics
Matches: 228, Mismatches: 26, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
131 8 0.04
132 218 0.96
133 2 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (132 bp):
CTTGGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTGCA
ATCTTCGACCTACTCCACTACTGCTTAGGGAGATAGGACTGGTGGCTTAAATCTGCTTCTCCACT
AC
Found at i:55844150 original size:44 final size:44
Alignment explanation
Indices: 55844087--55844286 Score: 164
Period size: 44 Copynumber: 4.5 Consensus size: 44
55844077 CATTTTTGAT
55844087 CTACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAAC
1 CTACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAAC
* * *
55844131 CTACTCCACTACTGCTTAGGGAGATAGGA-CT--AATGGCTTAAATCTGC
1 CTACTCCACTACTGCTTAGGGAGACAGAATCTGCAAT--CTTCAA----C
* * * * * *
55844178 CT-CTCCACTA-T-CTT-GGGAAGATAAGATTC-ACCATCTTCGAT
1 CTACTCCACTACTGCTTAGGG-AGA-CAGAATCTGCAATCTTCAAC
* * *
55844219 CTGCTCCACTACTGCTTAGGGAGACAGAATTTGCAATCTTCGAC
1 CTACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAAC
55844263 CTACTCCACTACTGCTTAGGGAGA
1 CTACTCCACTACTGCTTAGGGAGA
55844287 TAGGACTGGT
Statistics
Matches: 123, Mismatches: 17, Indels: 32
0.72 0.10 0.19
Matches are distributed among these distances:
41 5 0.04
42 8 0.07
43 15 0.12
44 71 0.58
45 10 0.08
46 9 0.07
47 5 0.04
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.28
Consensus pattern (44 bp):
CTACTCCACTACTGCTTAGGGAGACAGAATCTGCAATCTTCAAC
Found at i:55844288 original size:88 final size:89
Alignment explanation
Indices: 55843925--55844288 Score: 220
Period size: 88 Copynumber: 4.1 Consensus size: 89
55843915 CCACTGCACC
* * * *
55843925 GCTT-GGGAAATAAGATTCACTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA-ATCTA
1 GCTTAGGGAGATAAGATTCACTATCTTCAATCTGCTCCACTACTGCTTAGGGAGACAGACATTTA
* *
55843988 CAATCTTTGACCTATTCCAATACT
66 CAATCTTTGACCTACTCCACTACT
* * * ** ** * * * * *
55844012 GCTTATGGAGATAGGACT-GGTGGCTTAAATCTGCTTCC-CTTCTACCTT-GGGAAGATA-AGAT
1 GCTTAGGGAGATAAGATTCACTATCTTCAATCTGC-TCCACTACT-GCTTAGGG-AGACAGACAT
* * * *
55844073 TCACCATTTTTGATCTACTCCACTACT
63 TTACAATCTTTGACCTACTCCACTACT
* * * * * * *
55844100 GCTTAGGGAGA-CAGAATCTGCAATCTTCAACCTACTCCACTACTGCTTAGGGAGATAGGACTAA
1 GCTTAGGGAGATAAGATTC-ACTATCTTCAATCTGCTCCACTACTGCTTAGGGAGACA-GAC--A
55844164 TGGCTTA-AATC--TG-CCT-CTCCACTA-T
62 T---TTACAATCTTTGACCTACTCCACTACT
* *
55844189 -CTT-GGGAAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGA-ATTT
1 GCTTAGGG-AGATAAGATTCACTATCTTCAATCTGCTCCACTACTGCTTAGGGAGACAGACATTT
* *
55844251 GCAATCTTCGACCTACTCCACTACT
65 ACAATCTTTGACCTACTCCACTACT
55844276 GCTTAGGGAGATA
1 GCTTAGGGAGATA
55844289 GGACTGGTGG
Statistics
Matches: 204, Mismatches: 47, Indels: 51
0.68 0.16 0.17
Matches are distributed among these distances:
81 2 0.01
82 4 0.02
84 3 0.01
85 3 0.01
86 8 0.04
87 32 0.16
88 108 0.53
89 25 0.12
90 9 0.04
91 2 0.01
92 4 0.02
94 2 0.01
95 2 0.01
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (89 bp):
GCTTAGGGAGATAAGATTCACTATCTTCAATCTGCTCCACTACTGCTTAGGGAGACAGACATTTA
CAATCTTTGACCTACTCCACTACT
Found at i:55844406 original size:89 final size:89
Alignment explanation
Indices: 55844304--55844704 Score: 550
Period size: 89 Copynumber: 4.5 Consensus size: 89
55844294 GGTGGTTTAA
* *
55844304 ATCTACTTCGCCGTCAGTACAGGAAGGTAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTAC
1 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTAC
* * * *
55844369 AGAAAGGCAAGGCTGGTGTCTTTG
66 AGGAAGGCAAGACTGGTTTCTTCG
* * * *
55844393 ATCTACTTCGCCGTCAGTATAGGAAGGCATGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTAT
1 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTAC
*
55844458 AGGAAGGCAAAACTGGTTTCTTCG
66 AGGAAGGCAAGACTGGTTTCTTCG
* * *
55844482 ATCTGCTTCGCCGCCAGTACAGGAAGGCAAGATCTGTTATCTTCAGTCTGCTTCACTGTCAGTAC
1 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTAC
* * *
55844547 AGGAAGGCAAGACTGATATCTTCA
66 AGGAAGGCAAGACTGGTTTCTTCG
* ** * * * **
55844571 ATCTGCTTCTCTATCAGTACAGAAAGGCAGGATCTGCTATCTTTAGTCTGCTCTGCTGTCAGTAC
1 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTAC
*
55844636 AGGAAGACAAGACTGGTTTCTTCG
66 AGGAAGGCAAGACTGGTTTCTTCG
* *
55844660 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAAATTTGCTATCTTCA
1 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCA
55844705 TTGATCTGTT
Statistics
Matches: 269, Mismatches: 43, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
89 269 1.00
ACGTcount: A:0.24, C:0.24, G:0.23, T:0.29
Consensus pattern (89 bp):
ATCTGCTTCGCCGTCAGTACAGGAAGGCAAGATCTGCTATCTTCAGTCTGCTCCACTGTCAGTAC
AGGAAGGCAAGACTGGTTTCTTCG
Found at i:55844500 original size:44 final size:44
Alignment explanation
Indices: 55844304--55844691 Score: 291
Period size: 44 Copynumber: 8.7 Consensus size: 44
55844294 GGTGGTTTAA
* * * * *
55844304 ATCTACTTCGCCGTCAGTACAGGAAGGTAAGATCTGCTATCTTC-
1 ATCTGCTTCGCTGTCAGTACAGGAAGGCAA-AACTGGTATCTTCG
* * * ** * *
55844348 AGTCTGCTCCACTGTCAGTACAGAAAGGCAAGGCTGGTGTCTTTG
1 A-TCTGCTTCGCTGTCAGTACAGGAAGGCAAAACTGGTATCTTCG
* * * * * *
55844393 ATCTACTTCGCCGTCAGTATAGGAAGGCATGATCTGCTATCTTC-
1 ATCTGCTTCGCTGTCAGTACAGGAAGGCA-AAACTGGTATCTTCG
* * * *
55844437 AGTCTGCTCCACTGTCAGTATAGGAAGGCAAAACTGGTTTCTTCG
1 A-TCTGCTTCGCTGTCAGTACAGGAAGGCAAAACTGGTATCTTCG
* * * *
55844482 ATCTGCTTCGCCGCCAGTACAGGAAGGCAAGATCTGTTATCTTC-
1 ATCTGCTTCGCTGTCAGTACAGGAAGGCAA-AACTGGTATCTTCG
* * * *
55844526 AGTCTGCTTCACTGTCAGTACAGGAAGGCAAGACTGATATCTTCA
1 A-TCTGCTTCGCTGTCAGTACAGGAAGGCAAAACTGGTATCTTCG
* * * * * * *
55844571 ATCTGCTTCTCTATCAGTACAGAAAGGCAGGATCTGCTATCTT-T
1 ATCTGCTTCGCTGTCAGTACAGGAAGGCA-AAACTGGTATCTTCG
* * *
55844615 AGTCTGC-TCTGCTGTCAGTACAGGAAGACAAGACTGGTTTCTTCG
1 A-TCTGCTTC-GCTGTCAGTACAGGAAGGCAAAACTGGTATCTTCG
*
55844660 ATCTGCTTCGCCGTCAGTACAGGAAGGCAAAA
1 ATCTGCTTCGCTGTCAGTACAGGAAGGCAAAA
55844692 TTTGCTATCT
Statistics
Matches: 265, Mismatches: 66, Indels: 26
0.74 0.18 0.07
Matches are distributed among these distances:
44 138 0.52
45 127 0.48
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (44 bp):
ATCTGCTTCGCTGTCAGTACAGGAAGGCAAAACTGGTATCTTCG
Found at i:55846024 original size:10 final size:10
Alignment explanation
Indices: 55846011--55846063 Score: 79
Period size: 10 Copynumber: 5.2 Consensus size: 10
55846001 TTCTTCTTCT
55846011 TTCTTTTTTA
1 TTCTTTTTTA
55846021 TTCTTTTTTA
1 TTCTTTTTTA
55846031 TTCTTTTTTA
1 TTCTTTTTTA
*
55846041 TTCTTTTTTT
1 TTCTTTTTTA
*
55846051 TATATTTTTTA
1 T-TCTTTTTTA
55846062 TT
1 TT
55846064 GAATCTGAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
10 31 0.79
11 8 0.21
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (10 bp):
TTCTTTTTTA
Found at i:55846024 original size:14 final size:13
Alignment explanation
Indices: 55845983--55846051 Score: 57
Period size: 14 Copynumber: 4.9 Consensus size: 13
55845973 GCCTCTCATT
55845983 TTTCTTTTTTTTC
1 TTTCTTTTTTTTC
* *
55845996 TCTTCTTCTTCTTC
1 T-TTCTTTTTTTTC
55846010 TTTCTTTTTTATTC
1 TTTCTTTTTT-TTC
* *
55846024 TTTTTTATTCTTTTT
1 TTTCTT-TT-TTTTC
55846039 TATTCTTTTTTTT
1 T-TTCTTTTTTTT
55846052 ATATTTTTTA
Statistics
Matches: 44, Mismatches: 7, Indels: 9
0.73 0.12 0.15
Matches are distributed among these distances:
13 8 0.18
14 23 0.52
15 7 0.16
16 6 0.14
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (13 bp):
TTTCTTTTTTTTC
Found at i:55846034 original size:27 final size:27
Alignment explanation
Indices: 55845983--55846049 Score: 73
Period size: 27 Copynumber: 2.4 Consensus size: 27
55845973 GCCTCTCATT
*
55845983 TTTCTTTTTTTTCTCTTCTTCTTCTTC
1 TTTCTTTTTTTTCTCTTCTTATTCTTC
* *
55846010 TTTCTTTTTTATTCT-TTTTTATTCTTT
1 TTTCTTTTTT-TTCTCTTCTTATTCTTC
*
55846037 TTTATTCTTTTTT
1 TTTCTT-TTTTTT
55846050 TTATATTTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
27 26 0.76
28 8 0.24
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.79
Consensus pattern (27 bp):
TTTCTTTTTTTTCTCTTCTTATTCTTC
Found at i:55846048 original size:21 final size:19
Alignment explanation
Indices: 55845984--55846051 Score: 77
Period size: 20 Copynumber: 3.6 Consensus size: 19
55845974 CCTCTCATTT
* *
55845984 TTCTTTTTTTTC--TCTTC
1 TTCTTTTTTTTCTTTTTTA
*
55846001 TTCTTCTTCTTTCTTTTTTA
1 TTCTT-TTTTTTCTTTTTTA
55846021 TTCTTTTTTATTCTTTTTTA
1 TTCTTTTTT-TTCTTTTTTA
55846041 TTCTTTTTTTT
1 TTCTTTTTTTT
55846052 ATATTTTTTA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
17 5 0.12
18 6 0.14
19 5 0.12
20 27 0.63
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.79
Consensus pattern (19 bp):
TTCTTTTTTTTCTTTTTTA
Found at i:55850950 original size:42 final size:42
Alignment explanation
Indices: 55850886--55850981 Score: 124
Period size: 42 Copynumber: 2.3 Consensus size: 42
55850876 AAGAAAATAG
* *
55850886 ATAAAAATTATAAAATATAAAAATATATATATGTATGTATAT
1 ATAAAAATTATAAAATACAAAAATATATATAAGTATGTATAT
* * * *
55850928 TTAAAATTTATTAAATACAAAAATTTATATAAGTATGTATAT
1 ATAAAAATTATAAAATACAAAAATATATATAAGTATGTATAT
55850970 AT--AAATTATAAA
1 ATAAAAATTATAAA
55850982 TTATGAAATA
Statistics
Matches: 45, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
40 8 0.18
42 37 0.82
ACGTcount: A:0.55, C:0.01, G:0.04, T:0.40
Consensus pattern (42 bp):
ATAAAAATTATAAAATACAAAAATATATATAAGTATGTATAT
Found at i:55854795 original size:50 final size:49
Alignment explanation
Indices: 55854671--55854919 Score: 273
Period size: 50 Copynumber: 4.9 Consensus size: 49
55854661 GATAATAACA
* * ** * *
55854671 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTGG
* *
55854722 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCT-GG
* * *
55854772 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATC-TGG
*
55854822 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T--GG
* *
55854877 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
55854920 TTACCCAAAT
Statistics
Matches: 170, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 90 0.53
51 34 0.20
53 4 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.20, C:0.29, G:0.24, T:0.27
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTGG
Found at i:55854848 original size:100 final size:104
Alignment explanation
Indices: 55854670--55854919 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 104
55854660 TGATAATAAC
** *
55854670 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTCATGGTGCCCATGCCATG
* *
55854735 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
55854772 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTTGGTGCCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCATGGTGCCCATGCCATGT
55854836 CCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
66 CCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* *
55854877 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
55854920 TTACCCAAAT
Statistics
Matches: 133, Mismatches: 9, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
100 51 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 40 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:55855034 original size:13 final size:13
Alignment explanation
Indices: 55855013--55855044 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
55855003 GCTTGGATCA
*
55855013 TCATCAAATAAAT
1 TCATAAAATAAAT
55855026 TCATAAAATAAAT
1 TCATAAAATAAAT
55855039 TCATAA
1 TCATAA
55855045 TTGCTGGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.12, G:0.00, T:0.31
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:55855291 original size:30 final size:30
Alignment explanation
Indices: 55855256--55855313 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
55855246 CCTCGACTCT
*
55855256 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
55855286 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
55855314 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:55857507 original size:70 final size:70
Alignment explanation
Indices: 55857394--55857533 Score: 271
Period size: 70 Copynumber: 2.0 Consensus size: 70
55857384 TCATCATGAG
55857394 AAGGGATTTTATCCGTAAGGAGGCTGAGGAAACTTGGAGAGTCAGTAGATTCACCAGGATGACAA
1 AAGGGATTTTATCCGTAAGGAGGCTGAGGAAACTTGGAGAGTCAGTAGATTCACCAGGATGACAA
55857459 CTGAA
66 CTGAA
*
55857464 AAGGGATTTTATCCGTAAGGAGGCTGAGGAAACTTGGAGAGTCAGTAGATTCATCAGGATGACAA
1 AAGGGATTTTATCCGTAAGGAGGCTGAGGAAACTTGGAGAGTCAGTAGATTCACCAGGATGACAA
55857529 CTGAA
66 CTGAA
55857534 GTGGATAATG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.34, C:0.14, G:0.30, T:0.22
Consensus pattern (70 bp):
AAGGGATTTTATCCGTAAGGAGGCTGAGGAAACTTGGAGAGTCAGTAGATTCACCAGGATGACAA
CTGAA
Found at i:55860940 original size:105 final size:105
Alignment explanation
Indices: 55860808--55861251 Score: 602
Period size: 105 Copynumber: 4.2 Consensus size: 105
55860798 GCCATTGATT
* * * * * *** * *
55860808 AATGCACTATAGGTAACAACATTAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATC-AT
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAGTCTCTA-
* * * * * * *
55860872 TAGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
65 CAGCTTTAGAAATCATTCCTTCCTTGCAAAGTGCATCAACC
*
55860913 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATTTCAACAGTCTCTAC
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAGTCTCTAC
**
55860978 AGCTTTAGAAATTGTTCCTTCCTTGCAAAGTGCATCAACC
66 AGCTTTAGAAATCATTCCTTCCTTGCAAAGTGCATCAACC
*
55861018 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACGGTCTCTAC
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAGTCTCTAC
*
55861083 AGCTTTAGAAATCGTTCCTTCCTTGCAAAGTGCATCAACC
66 AGCTTTAGAAATCATTCCTTCCTTGCAAAGTGCATCAACC
* ** *
55861123 AATGTATTATACGTGACAACATCGGGCTCAATGCCTTGCTTTCTCATCATGTCAACGGTCTCTAC
1 AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAGTCTCTAC
*
55861188 AGCTTTAGAAATCATTCCTTCCTTGCAAAGAGCATCAACC
66 AGCTTTAGAAATCATTCCTTCCTTGCAAAGTGCATCAACC
* * *
55861228 AATGTATTATACATGACAATATTA
1 AATGTACTATACGTGACAACATTA
55861252 AGTGAAATAT
Statistics
Matches: 306, Mismatches: 32, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
105 305 1.00
106 1 0.00
ACGTcount: A:0.29, C:0.26, G:0.14, T:0.31
Consensus pattern (105 bp):
AATGTACTATACGTGACAACATTAGGCTCAATGCCTTGCTTTCTCATCATGTCAACAGTCTCTAC
AGCTTTAGAAATCATTCCTTCCTTGCAAAGTGCATCAACC
Found at i:55862426 original size:15 final size:15
Alignment explanation
Indices: 55862406--55862437 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
55862396 TAAAATACTC
*
55862406 TATTTTTATAATTTA
1 TATTTTTATAAGTTA
55862421 TATTTTTATAAGTTA
1 TATTTTTATAAGTTA
55862436 TA
1 TA
55862438 ATTTATAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.03, T:0.62
Consensus pattern (15 bp):
TATTTTTATAAGTTA
Found at i:55863051 original size:36 final size:37
Alignment explanation
Indices: 55863010--55863079 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 37
55863000 ACCAAAAATT
* *
55863010 TATTTTAAAA-ATAAAAATAAAAAAGTATTTTTAAAA
1 TATTTTAAAATATAAAAATAAAAAAATATATTTAAAA
*
55863046 TATTTTAAAATTTAAAAATAAAAAAATATATTTA
1 TATTTTAAAATATAAAAATAAAAAAATATATTTA
55863080 TTATATTCGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
36 10 0.33
37 20 0.67
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (37 bp):
TATTTTAAAATATAAAAATAAAAAAATATATTTAAAA
Found at i:55867088 original size:58 final size:58
Alignment explanation
Indices: 55867018--55867135 Score: 218
Period size: 58 Copynumber: 2.0 Consensus size: 58
55867008 AAGAAGAAGA
*
55867018 AGAAATGGACATACTTTAACTGCGACCGTTTTGTTCCTCCAAGGTAGAGCCACCACTT
1 AGAAATGGACATACCTTAACTGCGACCGTTTTGTTCCTCCAAGGTAGAGCCACCACTT
*
55867076 AGAAATGGACATACCTTAGCTGCGACCGTTTTGTTCCTCCAAGGTAGAGCCACCACTT
1 AGAAATGGACATACCTTAACTGCGACCGTTTTGTTCCTCCAAGGTAGAGCCACCACTT
55867134 AG
1 AG
55867136 TTTGCTGTTA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.27, C:0.26, G:0.20, T:0.26
Consensus pattern (58 bp):
AGAAATGGACATACCTTAACTGCGACCGTTTTGTTCCTCCAAGGTAGAGCCACCACTT
Found at i:55869557 original size:105 final size:105
Alignment explanation
Indices: 55869306--55869547 Score: 376
Period size: 105 Copynumber: 2.3 Consensus size: 105
55869296 ACCGTTAACT
* * * * *
55869306 AATGCACCATAGGTAACAATATTAGGCTCAATGCCTCGCTTTATCATTGCATCAACAATATCCTC
1 AATGCACTATAAGTAAAAACATCAGGCTCAATGCCTCGCTTTATCATTGCATCAACAATATCCTC
55869371 AGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
66 AGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
* * *
55869411 AATGCACTATAGGTAAAAACATCAGGCTCGATGCCTCGCTTTATCATTGCGTCAACAATATCCTC
1 AATGCACTATAAGTAAAAACATCAGGCTCAATGCCTCGCTTTATCATTGCATCAACAATATCCTC
55869476 AGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
66 AGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
* * * *
55869516 AATGTATTATAAGTGACAACATCAGGCTCAAT
1 AATGCACTATAAGTAAAAACATCAGGCTCAAT
55869548 ATCTTGCTTT
Statistics
Matches: 125, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
105 125 1.00
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (105 bp):
AATGCACTATAAGTAAAAACATCAGGCTCAATGCCTCGCTTTATCATTGCATCAACAATATCCTC
AGCTTCAGAGACCATCCCTTCCTTGCAATGCGCATCAACC
Found at i:55869601 original size:105 final size:105
Alignment explanation
Indices: 55869329--55869635 Score: 350
Period size: 105 Copynumber: 2.9 Consensus size: 105
55869319 TAACAATATT
* *
55869329 AGGCTCAATGCCTCGCTTTATCATTGCATCAACAATATCCTCAGCTTCAGAGACCATCCCTTCCT
1 AGGCTCAATACCTCGCTTTATCATTGCATCAACAATATCCTCAGCTTCAGAAACCATCCCTTCCT
* * * *
55869394 TGCAATGCGCATCAACCAATGCACTATAGGTAAAAACATC
66 TGCAATGCGCATCAACCAATGTATTATAAGTGAAAACATC
* * * *
55869434 AGGCTCGATGCCTCGCTTTATCATTGCGTCAACAATATCCTCAGCTTCAGAGACCATCCCTTCCT
1 AGGCTCAATACCTCGCTTTATCATTGCATCAACAATATCCTCAGCTTCAGAAACCATCCCTTCCT
*
55869499 TGCAATGCGCATCAACCAATGTATTATAAGTGACAACATC
66 TGCAATGCGCATCAACCAATGTATTATAAGTGAAAACATC
* * * * * * * * *
55869539 AGGCTCAATATCTTGCTTTCTCA-T-CAT-ATCAATGGTCTCTACAGCTTTAGAAATCGTTCCTT
1 AGGCTCAATACCTCGCTTTATCATTGCATCAACAAT-ATC-CT-CAGCTTCAGAAACCATCCCTT
* * * *
55869601 CCTTGCAAAGTGCATCAATCAATATATTATAAGTG
63 CCTTGCAATGCGCATCAACCAATGTATTATAAGTG
55869636 TCAATATTAA
Statistics
Matches: 175, Mismatches: 24, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
102 5 0.03
103 4 0.02
104 3 0.02
105 163 0.93
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (105 bp):
AGGCTCAATACCTCGCTTTATCATTGCATCAACAATATCCTCAGCTTCAGAAACCATCCCTTCCT
TGCAATGCGCATCAACCAATGTATTATAAGTGAAAACATC
Found at i:55873010 original size:42 final size:43
Alignment explanation
Indices: 55872958--55873074 Score: 130
Period size: 43 Copynumber: 2.7 Consensus size: 43
55872948 AAGTTGAGAT
* **
55872958 TTACATGTAAGATCATGTCTGGGACATTGGTTTCG-TATATGA
1 TTACATGTAAGATCATGTTTGGGACATTGGCATCGTTATATGA
* * * *
55873000 TTATATGTAAGACTC-TGTTTGGGACAGTGGCATCGTTGTTTGA
1 TTACATGTAAGA-TCATGTTTGGGACATTGGCATCGTTATATGA
* *
55873043 TTACATGTAAGACCATGTTTGGGACGTTGGCA
1 TTACATGTAAGATCATGTTTGGGACATTGGCA
55873075 CTGTACGAGC
Statistics
Matches: 61, Mismatches: 11, Indels: 5
0.79 0.14 0.06
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.24, C:0.13, G:0.26, T:0.37
Consensus pattern (43 bp):
TTACATGTAAGATCATGTTTGGGACATTGGCATCGTTATATGA
Found at i:55878887 original size:14 final size:15
Alignment explanation
Indices: 55878857--55878888 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
55878847 CTTTAAAAAC
55878857 TAATAAAAAAATATA
1 TAATAAAAAAATATA
55878872 TAATAAAAAAAT-TA
1 TAATAAAAAAATATA
55878886 TAA
1 TAA
55878889 ATCAATTAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
TAATAAAAAAATATA
Found at i:55882185 original size:3 final size:3
Alignment explanation
Indices: 55882177--55882207 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
55882167 CTAGAATCTC
55882177 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
55882208 TGGAAAGAGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:55888345 original size:44 final size:46
Alignment explanation
Indices: 55888255--55888346 Score: 143
Period size: 46 Copynumber: 2.0 Consensus size: 46
55888245 TTTGGTTCGC
* *
55888255 TGTAATGGAATAGAGACGTAATAGGTAATTCTTTTGTTTGGTTGAA
1 TGTAATGGAATAGAGACGTAATAGATAATTCTTGTGTTTGGTTGAA
*
55888301 TGTAATGGAATAGAGGCGTAAT-GAT-ATTCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGACGTAATAGATAATTCTTGTGTTTGGTTGAA
55888345 TG
1 TG
55888347 GAATAGAGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 20 0.47
45 2 0.05
46 21 0.49
ACGTcount: A:0.28, C:0.04, G:0.28, T:0.39
Consensus pattern (46 bp):
TGTAATGGAATAGAGACGTAATAGATAATTCTTGTGTTTGGTTGAA
Found at i:55888347 original size:39 final size:44
Alignment explanation
Indices: 55888255--55888368 Score: 130
Period size: 46 Copynumber: 2.6 Consensus size: 44
55888245 TTTGGTTCGC
* * *
55888255 TGTAATGGAATAGAGACGTAATAGGTAATTCTTTTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTT--A
55888301 TGTAATGGAATAGAGGCGTAAT-GAT-ATTCTTGTGTTTGG-T-
1 TGTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTA
*
55888341 TG-AATGGAATAGAGGTGTAATAGCATAA
1 TGTAATGGAATAGAGGCGTAATAG-ATAA
55888369 GGAAAAAAGC
Statistics
Matches: 61, Mismatches: 4, Indels: 10
0.81 0.05 0.13
Matches are distributed among these distances:
39 18 0.30
40 3 0.05
41 2 0.03
42 1 0.02
43 1 0.02
44 13 0.21
45 2 0.03
46 21 0.34
ACGTcount: A:0.32, C:0.04, G:0.28, T:0.36
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGATAATTCTTGTGTTTGGTTA
Found at i:55888550 original size:17 final size:17
Alignment explanation
Indices: 55888510--55888543 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
55888500 TTTTTATAAA
55888510 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55888527 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55888544 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:55888615 original size:20 final size:21
Alignment explanation
Indices: 55888577--55888616 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
55888567 AATTACTAAT
*
55888577 AAAATCATAATATATAATAAG
1 AAAATCATAATATAAAATAAG
*
55888598 AAAAT-ATAATTTAAAATAA
1 AAAATCATAATATAAAATAA
55888617 TTATTATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (21 bp):
AAAATCATAATATAAAATAAG
Found at i:55888631 original size:117 final size:117
Alignment explanation
Indices: 55888490--55888979 Score: 759
Period size: 117 Copynumber: 4.3 Consensus size: 117
55888480 TTAATCATAT
* * *
55888490 TTTAACATAATTTTTATAAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
*
55888555 ATTCTTATATGAAATTACTAATAAAATCATAATATATAATAAGAAAATATAA
66 ATTCTTATATGAAATTACTAATAAAATCATAATATATAATAATAAAATATAA
55888607 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
* * *
55888672 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTTAAATATAA
66 ATTCTTATATGAAATTACTAATAAAATCATAATATATAATAATAAAATATAA
55888724 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
1 TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
* * *
55888789 ATTCTTATATGAATTTACTAATAAAATCATAATATATAATACTCAAATATAA
66 ATTCTTATATGAAATTACTAATAAAATCATAATATATAATAATAAAATATAA
* *
55888841 TTTAAAATAATTATTATTAAATATAATGTAATAATAATATATAATTTAATAAAA---TT-CT---
1 TTTAAAATAATTATTATTAAATATAATTTAATAA-AATATATAATTTAATAAAATTGTTAATAAA
*
55888899 TATTCTTATATG-AATT--TACTAAAATCATAATATATAATACTATAAAATATAA
65 TATTCTTATATGAAATTACTAATAAAATCATAATATATAATA--ATAAAATATAA
55888951 TTT-AAATAATTATTATTAAATATAATTTA
1 TTTAAAATAATTATTATTAAATATAATTTA
55888980 TAATCTACTT
Statistics
Matches: 355, Mismatches: 15, Indels: 14
0.92 0.04 0.04
Matches are distributed among these distances:
108 22 0.06
109 25 0.07
110 15 0.04
111 12 0.03
114 1 0.00
115 2 0.01
117 259 0.73
118 19 0.05
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (117 bp):
TTTAAAATAATTATTATTAAATATAATTTAATAAAATATATAATTTAATAAAATTGTTAATAAAT
ATTCTTATATGAAATTACTAATAAAATCATAATATATAATAATAAAATATAA
Found at i:55888667 original size:17 final size:17
Alignment explanation
Indices: 55888627--55888660 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
55888617 TTATTATTAA
55888627 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55888644 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55888661 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:55888784 original size:17 final size:17
Alignment explanation
Indices: 55888744--55888777 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
55888734 TTATTATTAA
55888744 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55888761 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
55888778 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:55888975 original size:32 final size:32
Alignment explanation
Indices: 55888939--55889002 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
55888929 TATATAATAC
*
55888939 TATAAAATATAATTTAAATAATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
** ** *
55888971 TATAATTTATAATCTACTTTATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
55889003 CTGCAATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TATAAAATATAATCTAAATAATTATTATTAAA
Found at i:55890924 original size:10 final size:10
Alignment explanation
Indices: 55890909--55890933 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
55890899 CCTACAAAGG
55890909 AATCACAGTC
1 AATCACAGTC
55890919 AATCACAGTC
1 AATCACAGTC
55890929 AATCA
1 AATCA
55890934 GCTAATCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.28, G:0.08, T:0.20
Consensus pattern (10 bp):
AATCACAGTC
Found at i:55891100 original size:26 final size:26
Alignment explanation
Indices: 55891070--55891120 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
55891060 CTGTAAAATA
55891070 CTGCAGCTAATACCAATGACAAAAAC
1 CTGCAGCTAATACCAATGACAAAAAC
*
55891096 CTGCAGCTAATATCAATGACAAAAA
1 CTGCAGCTAATACCAATGACAAAAA
55891121 TAAATGCCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.47, C:0.24, G:0.12, T:0.18
Consensus pattern (26 bp):
CTGCAGCTAATACCAATGACAAAAAC
Found at i:55892105 original size:23 final size:23
Alignment explanation
Indices: 55892060--55892105 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
55892050 ATAAAAAATC
*
55892060 TATTTAAAAAAAAGGTCAAATTT
1 TATTTAAAAAAAAGGTAAAATTT
*
55892083 TATTTAAAATAAAGG-AAATATTT
1 TATTTAAAAAAAAGGTAAA-ATTT
55892106 CCACTTTGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 2 0.10
23 18 0.90
ACGTcount: A:0.52, C:0.02, G:0.09, T:0.37
Consensus pattern (23 bp):
TATTTAAAAAAAAGGTAAAATTT
Found at i:55896083 original size:18 final size:17
Alignment explanation
Indices: 55896060--55896132 Score: 59
Period size: 16 Copynumber: 4.5 Consensus size: 17
55896050 TTTGACCATC
*
55896060 AAAAATCAACTTGAATTT
1 AAAAAT-AACTTGAATCT
*
55896078 AAAAATGACTTGAATCT
1 AAAAATAACTTGAATCT
55896095 -AAAATGAAC-T-AATC-
1 AAAAAT-AACTTGAATCT
*
55896109 -GAAATAACTTGAATCT
1 AAAAATAACTTGAATCT
55896125 -AAAATAAC
1 AAAAATAAC
55896133 CCGAACACCA
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
13 3 0.07
14 5 0.11
15 8 0.17
16 13 0.28
17 11 0.24
18 6 0.13
ACGTcount: A:0.52, C:0.12, G:0.08, T:0.27
Consensus pattern (17 bp):
AAAAATAACTTGAATCT
Found at i:55900009 original size:3 final size:3
Alignment explanation
Indices: 55900003--55900032 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
55899993 CATCAACAGA
*
55900003 TTG TTG TTG TTG TTG TCG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG
55900033 CTGTCGCTGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.03, G:0.33, T:0.63
Consensus pattern (3 bp):
TTG
Found at i:55900524 original size:12 final size:12
Alignment explanation
Indices: 55900490--55900533 Score: 61
Period size: 12 Copynumber: 3.7 Consensus size: 12
55900480 TAGTGAATCG
55900490 GGTTTGGGTTCA
1 GGTTTGGGTTCA
*
55900502 GGTTCGGGTTCA
1 GGTTTGGGTTCA
*
55900514 GGTTTGAGTTCA
1 GGTTTGGGTTCA
*
55900526 AGTTTGGG
1 GGTTTGGG
55900534 ATGATCAAGA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.11, C:0.09, G:0.41, T:0.39
Consensus pattern (12 bp):
GGTTTGGGTTCA
Found at i:55902810 original size:44 final size:41
Alignment explanation
Indices: 55902762--55902870 Score: 98
Period size: 44 Copynumber: 2.6 Consensus size: 41
55902752 AGTATTATAT
55902762 ATTATGATTTTAGTAAATTTATATAAGAATAAGAATT-TTATTAA
1 ATTAT-ATTTTAGTAAA-TTATAT-AGAATAAGAATTATT-TTAA
* ** *
55902806 ATTATATATTATTATTAAATTATATTTAATAATAATTATTTTAA
1 A-T-TATATT-TTAGTAAATTATATAGAATAAGAATTATTTTAA
55902850 ATTATATTTTAGT--ATTATATA
1 ATTATATTTTAGTAAATTATATA
55902871 TTATGATTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
39 7 0.13
41 4 0.07
42 6 0.11
43 1 0.02
44 15 0.27
45 12 0.22
46 10 0.18
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (41 bp):
ATTATATTTTAGTAAATTATATAGAATAAGAATTATTTTAA
Found at i:55902858 original size:26 final size:28
Alignment explanation
Indices: 55902708--55902766 Score: 54
Period size: 25 Copynumber: 2.2 Consensus size: 28
55902698 AATAAAGTAG
55902708 ATTA-TAAATTATATTTAATAATA-ATT
1 ATTATTAAATTATATTTAATAATATATT
* *
55902734 A-T-TTAAATTATATTTTATAGTATTATAT
1 ATTATTAAATTATATTTAATAATA-TAT-T
55902762 ATTAT
1 ATTAT
55902767 GATTTTAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
25 18 0.72
26 1 0.04
27 2 0.08
28 2 0.08
29 1 0.04
30 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (28 bp):
ATTATTAAATTATATTTAATAATATATT
Found at i:55902928 original size:108 final size:109
Alignment explanation
Indices: 55902708--55902954 Score: 313
Period size: 109 Copynumber: 2.2 Consensus size: 109
55902698 AATAAAGTAG
55902708 ATTA-TAAATTATATTTAATAATAATTATTTAAATTATATTTTATAGTATTATATATTATGATTT
1 ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTATAGTATTATATATTATGATTT
*
55902772 TAGTAAATTTATATAAGAATAAGAATTTTATTAAATTATATATT
66 TAGTAAATTTACATAAGAATAAGAATTTTATTAAATTATATATT
55902816 ATTATTAAATTATATTTAATAATAATTATTTTAAATTATA-TTT-TAGTATTATATATTATGATT
1 ATTATTAAATTATATTTAATAATAATTA-TTTAAATTATATTTTATAGTATTATATATTATGA--
* * * *
55902879 TTATTAGTAAATTCATAAAAAAAATTTTATTAACAATTTTATTAAATTATATATT
63 TT-TTAGTAAATT--TACATAAGA----A-TAAGAATTTTATTAAATTATATATT
*
55902934 -TTATTAAATTATATTTTATAA
1 ATTATTAAATTATATTTAATAA
55902955 CAATATGTTA
Statistics
Matches: 122, Mismatches: 5, Indels: 15
0.86 0.04 0.11
Matches are distributed among these distances:
108 22 0.18
109 26 0.21
110 13 0.11
111 10 0.08
113 6 0.05
117 21 0.17
118 24 0.20
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (109 bp):
ATTATTAAATTATATTTAATAATAATTATTTAAATTATATTTTATAGTATTATATATTATGATTT
TAGTAAATTTACATAAGAATAAGAATTTTATTAAATTATATATT
Found at i:55902952 original size:15 final size:17
Alignment explanation
Indices: 55902914--55902947 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
55902904 TTTATTAACA
55902914 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
55902931 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
55902948 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:55903137 original size:39 final size:39
Alignment explanation
Indices: 55903094--55903195 Score: 150
Period size: 44 Copynumber: 2.5 Consensus size: 39
55903084 TCCTTATGCT
*
55903094 ATTACACCTCTATTCCATTCAACCAAACACAAGAATACC
1 ATTACGCCTCTATTCCATTCAACCAAACACAAGAATACC
55903133 ATTACGCCTCTATTCCATTACATTCAACCAAACACAAGAATACC
1 ATTACGCCTCTATT-C----CATTCAACCAAACACAAGAATACC
55903177 ATTACGCCTCTATTCCATT
1 ATTACGCCTCTATTCCATT
55903196 ACATTCAACC
Statistics
Matches: 57, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
39 17 0.30
40 1 0.02
43 1 0.02
44 38 0.67
ACGTcount: A:0.36, C:0.32, G:0.04, T:0.27
Consensus pattern (39 bp):
ATTACGCCTCTATTCCATTCAACCAAACACAAGAATACC
Found at i:55903172 original size:44 final size:44
Alignment explanation
Indices: 55903109--55903244 Score: 218
Period size: 44 Copynumber: 3.0 Consensus size: 44
55903099 ACCTCTATTC
55903109 CATTCAACCAAACACAAGAATACCATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGAATACCATTACGCCTCTATTCCATTA
55903153 CATTCAACCAAACACAAGAATACCATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGAATACCATTACGCCTCTATTCCATTA
* * * *
55903197 CATTCAACCAAACAAAAGAATTACCTATTATGCCTTTATTCAATTA
1 CATTCAACCAAACACAAGAA-TACC-ATTACGCCTCTATTCCATTA
55903243 CA
1 CA
55903245 GCGAACCAAA
Statistics
Matches: 86, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
44 63 0.73
45 4 0.05
46 19 0.22
ACGTcount: A:0.40, C:0.29, G:0.04, T:0.27
Consensus pattern (44 bp):
CATTCAACCAAACACAAGAATACCATTACGCCTCTATTCCATTA
Found at i:55905878 original size:105 final size:105
Alignment explanation
Indices: 55905736--55905977 Score: 403
Period size: 105 Copynumber: 2.3 Consensus size: 105
55905726 ACTATAGGTA
* *
55905736 ACAACATTAGGTTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTCAGCTTCAGAGACCAT
1 ACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTCAGCTTCAGAGACCAT
*
55905801 CCCTTCCTTGCAATGCGCATCAACCAATGTATTATACGTG
66 CCCTTCCTTGCAATGAGCATCAACCAATGTATTATACGTG
* * **
55905841 ACAATATCAGGCTCAATGCCTCTCTTTATCATTGCGTCAATGATATCCTCAGCTTCAGAGACCAT
1 ACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTCAGCTTCAGAGACCAT
55905906 CCCTTCCTTGCAATGAGCATCAACCAATGTATTATACGTG
66 CCCTTCCTTGCAATGAGCATCAACCAATGTATTATACGTG
* *
55905946 ACAACATCAGGCTCAATGCCTTGCATTATCAT
1 ACAACATCAGGCTCAATGCCTCGCTTTATCAT
55905978 CATGTCAACG
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
105 126 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.30
Consensus pattern (105 bp):
ACAACATCAGGCTCAATGCCTCGCTTTATCATTGCGTCAACAATATCCTCAGCTTCAGAGACCAT
CCCTTCCTTGCAATGAGCATCAACCAATGTATTATACGTG
Found at i:55910905 original size:114 final size:113
Alignment explanation
Indices: 55910756--55911149 Score: 472
Period size: 114 Copynumber: 3.5 Consensus size: 113
55910746 AAAAACACGA
* * *
55910756 AGAACTAGTGGCGTTTTTA-AAAAAACGCCGTAAAAGAACACTATTAGTGGCGTTTATTTGTAAG
1 AGAATTAGTGGCG--TTTACAAAAAACGCCGCAAAAGAACACTATTAGCGGCGTTTATTTGTAAG
* *
55910820 CGCCGCAAAATACCTTAACCAAAACGCAGCATTTGGTTTTGAGGTATATT
64 CGCCGCAAAATACCTTAACCAAAACGCAACGTTTGGTTTTGAGGTATATT
* * * *
55910870 AGAATTAGTGGCGTTTACCATAAAACGCCGCAAAAGAACAGTATTAGCGGCGTATTACTAG-AAG
1 AGAATTAGTGGCGTTTA-CAAAAAACGCCGCAAAAGAACACTATTAGCGGCGT-TTATTTGTAAG
* * * * *
55910934 CGCCGC-AAATATCTTAATCAAAACGCACCGTTTGGTCTTGAGGTAGATT
64 CGCCGCAAAATACCTTAACCAAAACGCAACGTTTGGTTTTGAGGTATATT
** * * * *
55910983 AGTGTTAGTGGCGTTTTAAAAAAAACGCCGTAAAAGAACATCT-TTAGTGGCGTTTATTTTTAAG
1 AGAATTAGTGGCG-TTTACAAAAAACGCCGCAAAAGAACA-CTATTAGCGGCGTTTATTTGTAAG
55911047 CGCCGCAAAATACCTTAACCAAAACGCAACGTTTGGTTTTGAGGTATATT
64 CGCCGCAAAATACCTTAACCAAAACGCAACGTTTGGTTTTGAGGTATATT
* * * * *
55911097 AAAATTAGTGGCGTTTACGGAAAAATGCCGCTAAAGAACAGTATTAGCGGCGT
1 AGAATTAGTGGCGTTTAC-AAAAAACGCCGCAAAAGAACACTATTAGCGGCGT
55911150 ATTACAAAAA
Statistics
Matches: 233, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
112 8 0.03
113 90 0.39
114 130 0.56
115 5 0.02
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.28
Consensus pattern (113 bp):
AGAATTAGTGGCGTTTACAAAAAACGCCGCAAAAGAACACTATTAGCGGCGTTTATTTGTAAGCG
CCGCAAAATACCTTAACCAAAACGCAACGTTTGGTTTTGAGGTATATT
Found at i:55911008 original size:113 final size:113
Alignment explanation
Indices: 55910756--55911203 Score: 456
Period size: 114 Copynumber: 3.9 Consensus size: 113
55910746 AAAAACACGA
* ** * * * * *
55910756 AGAACTAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACACTATTAGTGGCGTTTATTTGTAAGC
1 AGAATTAGTGGCGTTTACAAAAAAACGCCGCAAAAGAACAGTATTAGCGGCGTTTACTAG-AAGC
* *
55910821 GCCGCAAAATACCTTAACCAAAACGCAGCATTTGGTTTTGAGGTATATT
65 GCCGCAAAATACCTTAACCAAAACGCACCGTTTGGTTTTGAGGTATATT
* *
55910870 AGAATTAGTGGCGTTTACCATAAAACGCCGCAAAAGAACAGTATTAGCGGCGTATTACTAGAAGC
1 AGAATTAGTGGCGTTTACAAAAAAACGCCGCAAAAGAACAGTATTAGCGGCGT-TTACTAGAAGC
* * * *
55910935 GCCGC-AAATATCTTAATCAAAACGCACCGTTTGGTCTTGAGGTAGATT
65 GCCGCAAAATACCTTAACCAAAACGCACCGTTTGGTTTTGAGGTATATT
** * * * * **
55910983 AGTGTTAGTGGCGTTTTA-AAAAAAACGCCGTAAAAGAACA-TCTTTAGTGGCGTTTATTTTTAA
1 AGAATTAGTGGCG-TTTACAAAAAAACGCCGCAAAAGAACAGT-ATTAGCGGCGTTTA-CTAGAA
*
55911046 GCGCCGCAAAATACCTTAACCAAAACGCAACGTTTGGTTTTGAGGTATATT
63 GCGCCGCAAAATACCTTAACCAAAACGCACCGTTTGGTTTTGAGGTATATT
* ** * * * *
55911097 AAAATTAGTGGCGTTTACGGAAAAATGCCGCTAAAGAACAGTATTAGCGGCGTATTACAAAAAGC
1 AGAATTAGTGGCGTTTACAAAAAAACGCCGCAAAAGAACAGTATTAGCGGCGT-TTACTAGAAGC
* * ** * *
55911162 ACCAC-AAATATCGGT-ACTAAAACGCACCGTTTGGTGTTGAGG
65 GCCGCAAAATA-CCTTAACCAAAACGCACCGTTTGGTTTTGAGG
55911204 AAGGTTAGCA
Statistics
Matches: 273, Mismatches: 52, Indels: 19
0.79 0.15 0.06
Matches are distributed among these distances:
112 4 0.01
113 119 0.44
114 141 0.52
115 9 0.03
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (113 bp):
AGAATTAGTGGCGTTTACAAAAAAACGCCGCAAAAGAACAGTATTAGCGGCGTTTACTAGAAGCG
CCGCAAAATACCTTAACCAAAACGCACCGTTTGGTTTTGAGGTATATT
Found at i:55911172 original size:227 final size:227
Alignment explanation
Indices: 55910761--55911203 Score: 703
Period size: 227 Copynumber: 2.0 Consensus size: 227
55910751 CACGAAGAAC
*
55910761 TAGTGGCGTTTTTAAAAAAACGCCGTAAAAGAACACTATTAGTGGCGTTTATTTGTAAGCGCCGC
1 TAGTGGCGTTTTAAAAAAAACGCCGTAAAAGAACACTATTAGTGGCGTTTATTTGTAAGCGCCGC
* *
55910826 AAAATACCTTAACCAAAACGCAGCATTTGGTTTTGAGGTATATTAGAATTAGTGGCGTTTACCAT
66 AAAATACCTTAACCAAAACGCAACATTTGGTTTTGAGGTATATTAAAATTAGTGGCGTTTACCAT
* * * * *
55910891 AAAACGCCGCAAAAGAACAGTATTAGCGGCGTATTACTAGAAGCGCCGCAAATATC-TTAATCAA
131 AAAACGCCGCAAAAGAACAGTATTAGCGGCGTATTACAAAAAGCACCACAAATATCGGTAAT-AA
55910955 AACGCACCGTTTGGTCTTGAGGTAGATTAGTGT
195 AACGCACCGTTTGGTCTTGAGGTAGATTAGTGT
*
55910988 TAGTGGCGTTTTAAAAAAAACGCCGTAAAAGAACATCT-TTAGTGGCGTTTATTTTTAAGCGCCG
1 TAGTGGCGTTTTAAAAAAAACGCCGTAAAAGAACA-CTATTAGTGGCGTTTATTTGTAAGCGCCG
* *
55911052 CAAAATACCTTAACCAAAACGCAACGTTTGGTTTTGAGGTATATTAAAATTAGTGGCGTTTACGG
65 CAAAATACCTTAACCAAAACGCAACATTTGGTTTTGAGGTATATTAAAATTAGTGGCGTTTAC-C
* * *
55911117 A-AAAATGCCGCTAAAGAACAGTATTAGCGGCGTATTACAAAAAGCACCACAAATATCGGTACTA
129 ATAAAACGCCGCAAAAGAACAGTATTAGCGGCGTATTACAAAAAGCACCACAAATATCGGTAATA
*
55911181 AAACGCACCGTTTGGTGTTGAGG
194 AAACGCACCGTTTGGTCTTGAGG
55911204 AAGGTTAGCA
Statistics
Matches: 198, Mismatches: 15, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
227 192 0.97
228 6 0.03
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (227 bp):
TAGTGGCGTTTTAAAAAAAACGCCGTAAAAGAACACTATTAGTGGCGTTTATTTGTAAGCGCCGC
AAAATACCTTAACCAAAACGCAACATTTGGTTTTGAGGTATATTAAAATTAGTGGCGTTTACCAT
AAAACGCCGCAAAAGAACAGTATTAGCGGCGTATTACAAAAAGCACCACAAATATCGGTAATAAA
ACGCACCGTTTGGTCTTGAGGTAGATTAGTGT
Found at i:55911220 original size:113 final size:111
Alignment explanation
Indices: 55910756--55911244 Score: 396
Period size: 113 Copynumber: 4.3 Consensus size: 111
55910746 AAAAACACGA
* * * * **
55910756 AGAACTAGTGGCGTTTTTA-AAAAAACGCCG-TAAAAGAACACTATTAGTGGCGT-TTATTTGTA
1 AGAATTAGTGGCG--TTTACAAAAAACGCCGCT-AAAGAACAGTATTAGCGGCGTATTA-CTAAA
* * * * *
55910818 AGCGCCGCAAAATACCTTAACCAAAACGCAGCATTTGGTTTTGAGGTATATT
62 AGCGCCGC-AAATATCTT-ACTAAAACGCACCGTTTGGTTTTGAGGTAGATT
* * *
55910870 AGAATTAGTGGCGTTTACCATAAAACGCCGCAAAAGAACAGTATTAGCGGCGTATTACTAGAAGC
1 AGAATTAGTGGCGTTTA-CAAAAAACGCCGCTAAAGAACAGTATTAGCGGCGTATTACTAAAAGC
* *
55910935 GCCGCAAATATCTTAATCAAAACGCACCGTTTGGTCTTGAGGTAGATT
65 GCCGCAAATATCTTACT-AAAACGCACCGTTTGGTTTTGAGGTAGATT
** * * * * **
55910983 AGTGTTAGTGGCGTTTTAAAAAAAACGCCG-TAAAAGAACA-TCTTTAGTGGCGT-TTATTTTTA
1 AGAATTAGTGGCG-TTTACAAAAAACGCCGCT-AAAGAACAGT-ATTAGCGGCGTATTA-CTAAA
* * * *
55911045 AGCGCCGCAAAATACCTTAACCAAAACGCAACGTTTGGTTTTGAGGTATATT
62 AGCGCCGC-AAATATCTT-ACTAAAACGCACCGTTTGGTTTTGAGGTAGATT
* * * *
55911097 AAAATTAGTGGCGTTTACGGAAAAATGCCGCTAAAGAACAGTATTAGCGGCGTATTACAAAAAGC
1 AGAATTAGTGGCGTTTAC-AAAAAACGCCGCTAAAGAACAGTATTAGCGGCGTATTACTAAAAGC
* * * * * *
55911162 ACCACAAATATCGGTACTAAAACGCACCGTTTGGTGTTGAGGAAGGTT
65 GCCGCAAATATC-TTACTAAAACGCACCGTTTGGTTTTGAGGTAGATT
* * * * *
55911210 AGCATCAGTGGCGCTTATTAAAAAACGCTGCTAAA
1 AGAATTAGTGGCGTTTA-CAAAAAACGCCGCTAAA
55911245 TATCGGGATA
Statistics
Matches: 297, Mismatches: 61, Indels: 35
0.76 0.16 0.09
Matches are distributed among these distances:
112 9 0.03
113 145 0.49
114 134 0.45
115 9 0.03
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (111 bp):
AGAATTAGTGGCGTTTACAAAAAACGCCGCTAAAGAACAGTATTAGCGGCGTATTACTAAAAGCG
CCGCAAATATCTTACTAAAACGCACCGTTTGGTTTTGAGGTAGATT
Found at i:55914149 original size:23 final size:23
Alignment explanation
Indices: 55914110--55914155 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
55914100 GCCCGATTCT
*
55914110 TCGTATTTATAGATTTGGTTTTG
1 TCGTATTTATAGATTTGATTTTG
*
55914133 TCGTATTTTTA-ATTTTGATTTTG
1 TCGTATTTATAGA-TTTGATTTTG
55914156 CTTTCTTATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 19 0.95
ACGTcount: A:0.17, C:0.04, G:0.17, T:0.61
Consensus pattern (23 bp):
TCGTATTTATAGATTTGATTTTG
Found at i:55914341 original size:44 final size:46
Alignment explanation
Indices: 55914265--55914352 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 46
55914255 GCTTCTATTA
*
55914265 TTGTTCATTACAGATTTTGGTCGAATGGTTTAGGGTGTTAGGAAAT
1 TTGTTCATTACAGATTTTGGTCGAATGGTTTAGGGTGCTAGGAAAT
* *
55914311 TTGTTCATTACTG-TTTT-GTTGAATGGTTTAGGGTGCTAGGAA
1 TTGTTCATTACAGATTTTGGTCGAATGGTTTAGGGTGCTAGGAA
55914353 CCGTTTTTAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
44 23 0.59
45 4 0.10
46 12 0.31
ACGTcount: A:0.22, C:0.07, G:0.28, T:0.43
Consensus pattern (46 bp):
TTGTTCATTACAGATTTTGGTCGAATGGTTTAGGGTGCTAGGAAAT
Found at i:55914694 original size:219 final size:216
Alignment explanation
Indices: 55914311--55914707 Score: 507
Period size: 217 Copynumber: 1.8 Consensus size: 216
55914301 GTTAGGAAAT
* * *
55914311 TTGTTCATTACTGTTTTGTTGAATGGTTTAGGGTGCTAGGAACCGTTTTTAACTATTGTTTTTTT
1 TTGTTCATTACTGTTTTGTTG-ATGGTTTAAGGTGCTAGGAACCGCTTTTAAC-ATTGTGTTTTT
* *
55914376 TTTCTCCAGTTTTCGGTCAATCCATTCCATTGCTTTCATTTCTTTTTGATTCATCATTCTTAAGG
64 CTTCTCCAGTTTTCGGTCAATCCATTCCATTGCTTTCATTTCTTTTTGA-TCATCATTCTGAAGG
* * *
55914441 TACAGAACACATGCTTTGTCTGTTGATTTGTTGAACTCGTTTTGTACTGTTTGACATCGTTATTT
128 TACAGAACACATGCTTTGTCTGTTGATGTGTTGAACTCATTTGGTACTGTTTGACATCGTTATTT
55914506 TCAGTCAATTTGGTACTGCTTCTA
193 TCAGTCAATTTGGTACTGCTTCTA
** * *
55914530 TTGTTCATTACTGTTTTTGTCTG-TGGTTTAATTTGTTAGGAACTGCTTTTAAC-TTGTGTTTTT
1 TTGTTCATTACTG-TTTTGT-TGATGGTTTAAGGTGCTAGGAACCGCTTTTAACATTGTGTTTTT
* * * *
55914593 CTTCTCTAGATTTT-GGTCAATCCATTTCATTGCTTTCGTTT-TAGTTTTCG-TCATCGTTCTGA
64 CTTCTCCAG-TTTTCGGTCAATCCATTCCATTGCTTTCATTTCT--TTTT-GATCATCATTCTGA
*
55914655 AGGTACAGAACACATGCTTTGTTACTGTTTATGTGTTGAACTCATTTGGTACT
125 AGGTACAGAACACATGCTTTG-T-CTGTTGATGTGTTGAACTCATTTGGTACT
55914708 CTTTTATTTC
Statistics
Matches: 153, Mismatches: 17, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
216 1 0.01
217 72 0.47
218 9 0.06
219 63 0.41
220 6 0.04
221 2 0.01
ACGTcount: A:0.18, C:0.16, G:0.17, T:0.49
Consensus pattern (216 bp):
TTGTTCATTACTGTTTTGTTGATGGTTTAAGGTGCTAGGAACCGCTTTTAACATTGTGTTTTTCT
TCTCCAGTTTTCGGTCAATCCATTCCATTGCTTTCATTTCTTTTTGATCATCATTCTGAAGGTAC
AGAACACATGCTTTGTCTGTTGATGTGTTGAACTCATTTGGTACTGTTTGACATCGTTATTTTCA
GTCAATTTGGTACTGCTTCTA
Found at i:55915880 original size:32 final size:30
Alignment explanation
Indices: 55915837--55915942 Score: 101
Period size: 32 Copynumber: 3.4 Consensus size: 30
55915827 AGATAAATTA
*
55915837 AATAACTTACATAACTTATTATGTAACAACAT
1 AATAAC-TACATAACTTATTAT-TAATAACAT
*
55915869 AATAAACTACATAA-TACATTATATAATAACAT
1 AAT-AACTACATAACT-TATTAT-TAATAACAT
*
55915901 AATAACTTAAATAACTTA-TA-TAATAACAT
1 AATAAC-TACATAACTTATTATTAATAACAT
55915930 AATAACTAACATA
1 AATAACT-ACATA
55915943 CAATATATAA
Statistics
Matches: 63, Mismatches: 6, Indels: 13
0.77 0.07 0.16
Matches are distributed among these distances:
28 1 0.02
29 19 0.30
31 6 0.10
32 33 0.52
33 4 0.06
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (30 bp):
AATAACTACATAACTTATTATTAATAACAT
Found at i:55915914 original size:20 final size:21
Alignment explanation
Indices: 55915873--55915942 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 21
55915863 CAACATAATA
*
55915873 AACT-ACATAAT-ACATTATAT
1 AACTAACATAATAAC-TTAAAT
55915893 AA-TAACATAATAACTTAAAT
1 AACTAACATAATAACTTAAAT
* * *
55915913 AACTTATATAATAACAT-AAT
1 AACTAACATAATAACTTAAAT
55915933 AACTAACATA
1 AACTAACATA
55915943 CAATATATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
19 1 0.02
20 27 0.66
21 13 0.32
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.31
Consensus pattern (21 bp):
AACTAACATAATAACTTAAAT
Found at i:55915919 original size:29 final size:29
Alignment explanation
Indices: 55915837--55915942 Score: 115
Period size: 29 Copynumber: 3.4 Consensus size: 29
55915827 AGATAAATTA
*
55915837 AATAACTTACATAACTTATTATGTAACAACAT
1 AATAACTTACATAACTTA-TA--TAATAACAT
55915869 AATAAAC-TACATAATACATTATATAATAACAT
1 AAT-AACTTACAT-A-AC-TTATATAATAACAT
*
55915901 AATAACTTAAATAACTTATATAATAACAT
1 AATAACTTACATAACTTATATAATAACAT
*
55915930 AATAACTAACATA
1 AATAACTTACATA
55915943 CAATATATAA
Statistics
Matches: 65, Mismatches: 4, Indels: 13
0.79 0.05 0.16
Matches are distributed among these distances:
29 25 0.38
30 2 0.03
31 4 0.06
32 23 0.35
33 4 0.06
34 4 0.06
35 3 0.05
ACGTcount: A:0.54, C:0.13, G:0.01, T:0.32
Consensus pattern (29 bp):
AATAACTTACATAACTTATATAATAACAT
Done.