Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 18 of 199
Found at i:7496425 original size:6 final size:6
Alignment explanation
Indices: 7496408--7496441 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
7496398 TCTAAGACAG
* *
7496408 ATGGTG ATGGTA ATGGTA ATGCTA ATGGTA ATGG
1 ATGGTA ATGGTA ATGGTA ATGGTA ATGGTA ATGG
7496442 AAGGTATCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.29, C:0.03, G:0.35, T:0.32
Consensus pattern (6 bp):
ATGGTA
Found at i:7507558 original size:13 final size:13
Alignment explanation
Indices: 7507520--7507558 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
7507510 TTTTTTATTA
*
7507520 CTTTTGAAAAGTG
1 CTTTTGAAAAGTT
*
7507533 CTTTTGAGAAGTT
1 CTTTTGAAAAGTT
7507546 CTTTTGAAAAGTT
1 CTTTTGAAAAGTT
7507559 TAGTTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.28, C:0.08, G:0.21, T:0.44
Consensus pattern (13 bp):
CTTTTGAAAAGTT
Found at i:7508297 original size:22 final size:22
Alignment explanation
Indices: 7508269--7508333 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
7508259 ACTAATGAAT
*
7508269 AGAGAGCACTAAAGTGCTATAC
1 AGAGAGCACTAAAGTGCTAAAC
*
7508291 AGAGAGCAC-AGATGTGCTAAAC
1 AGAGAGCACTA-AAGTGCTAAAC
*
7508313 AGAGAGCACTAACGTGCTAAA
1 AGAGAGCACTAAAGTGCTAAA
7508334 TATCAGAGAG
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
21 1 0.03
22 36 0.95
23 1 0.03
ACGTcount: A:0.42, C:0.18, G:0.25, T:0.15
Consensus pattern (22 bp):
AGAGAGCACTAAAGTGCTAAAC
Found at i:7509306 original size:8 final size:8
Alignment explanation
Indices: 7509293--7509333 Score: 64
Period size: 8 Copynumber: 5.0 Consensus size: 8
7509283 GTTTTTTTAT
7509293 ATATAATA
1 ATATAATA
7509301 ATATAATA
1 ATATAATA
*
7509309 TTATAATA
1 ATATAATA
7509317 ATATAATTA
1 ATATAA-TA
7509326 ATATAATA
1 ATATAATA
7509334 CTTATTTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 22 0.73
9 8 0.27
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
ATATAATA
Found at i:7509367 original size:28 final size:29
Alignment explanation
Indices: 7509298--7509368 Score: 76
Period size: 28 Copynumber: 2.4 Consensus size: 29
7509288 TTTATATATA
*
7509298 ATAATATAATATTATAATAATATAATTAAT
1 ATAATAT-ATATTATAATAATATAATAAAT
*
7509328 ATAATACT-TATT-TATTAAGTA-AATAAAT
1 ATAATA-TATATTATAATAA-TATAATAAAT
7509356 ATAATATATATTA
1 ATAATATATATTA
7509369 ACTAAAATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
27 1 0.03
28 21 0.60
29 6 0.17
30 6 0.17
31 1 0.03
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (29 bp):
ATAATATATATTATAATAATATAATAAAT
Found at i:7509585 original size:13 final size:13
Alignment explanation
Indices: 7509567--7509592 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7509557 ACAACTAACT
7509567 TTATAAATATTTA
1 TTATAAATATTTA
7509580 TTATAAATATTTA
1 TTATAAATATTTA
7509593 CGAATCCAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TTATAAATATTTA
Found at i:7516107 original size:12 final size:12
Alignment explanation
Indices: 7516090--7516119 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
7516080 ATGGTACATA
7516090 AAATGTGCACAC
1 AAATGTGCACAC
7516102 AAATGTGCACAC
1 AAATGTGCACAC
7516114 ATAATG
1 A-AATG
7516120 AGTGCAGAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.43, C:0.20, G:0.17, T:0.20
Consensus pattern (12 bp):
AAATGTGCACAC
Found at i:7521302 original size:19 final size:17
Alignment explanation
Indices: 7521278--7521312 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
7521268 ATTGCTTGTA
7521278 TATTGTATAACTTTTATTT
1 TATTGT-TAA-TTTTATTT
7521297 TATTGTTAATTTTATT
1 TATTGTTAATTTTATT
7521313 ACTATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.66
Consensus pattern (17 bp):
TATTGTTAATTTTATTT
Found at i:7522252 original size:51 final size:51
Alignment explanation
Indices: 7522149--7522270 Score: 138
Period size: 51 Copynumber: 2.4 Consensus size: 51
7522139 ATTAGAGTAT
* * *
7522149 ACAATCTATAAATGTTGAAAGTTTATTTTTTTGAAATAAAGACTAAAATGAC
1 ACAATATATAAATGTT-AAAGGTTATCTTTTTGAAATAAAGACTAAAATGAC
* * * * *
7522201 ACAAT-TAGTAAATGTTAAGGGTTATCTTTTTGAAATTAGGATTAAATTGAC
1 ACAATATA-TAAATGTTAAAGGTTATCTTTTTGAAATAAAGACTAAAATGAC
*
7522252 ATAATATATAAATGTTAAA
1 ACAATATATAAATGTTAAA
7522271 AATTAAAGAT
Statistics
Matches: 59, Mismatches: 9, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
51 44 0.75
52 15 0.25
ACGTcount: A:0.43, C:0.06, G:0.13, T:0.38
Consensus pattern (51 bp):
ACAATATATAAATGTTAAAGGTTATCTTTTTGAAATAAAGACTAAAATGAC
Found at i:7524776 original size:44 final size:44
Alignment explanation
Indices: 7524702--7524786 Score: 109
Period size: 44 Copynumber: 1.9 Consensus size: 44
7524692 TATTAAACTT
* * *
7524702 AATTTTTTTTGGTTATATAATTTCAAATCTTTTATGCTAAGTTA
1 AATTTCTTTTGATTATATAATTTCAAATCTTTCATGCTAAGTTA
**
7524746 AATTTCTTTTGATTATATAATATT-GGATCTTTCATGCTAAG
1 AATTTCTTTTGATTATATAAT-TTCAAATCTTTCATGCTAAG
7524787 ATAATAACAA
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.29, C:0.08, G:0.11, T:0.52
Consensus pattern (44 bp):
AATTTCTTTTGATTATATAATTTCAAATCTTTCATGCTAAGTTA
Found at i:7530819 original size:16 final size:17
Alignment explanation
Indices: 7530800--7530831 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
7530790 AGGGGGTCTC
7530800 AACAGTACC-GAGCTCT
1 AACAGTACCTGAGCTCT
7530816 AACAGTACCTGAGCTC
1 AACAGTACCTGAGCTC
7530832 ACCCAGCAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.31, C:0.31, G:0.19, T:0.19
Consensus pattern (17 bp):
AACAGTACCTGAGCTCT
Found at i:7532058 original size:404 final size:404
Alignment explanation
Indices: 7531309--7532527 Score: 2438
Period size: 404 Copynumber: 3.0 Consensus size: 404
7531299 GGACTAAGGA
7531309 GAAGGAAAGTTATTGCCATTTTGGCAATTCAAAATCTCAACTCCCAGTTGCTGGTGCTTTTTTTT
1 GAAGGAAAGTTATTGCCATTTTGGCAATTCAAAATCTCAACTCCCAGTTGCTGGTGCTTTTTTTT
7531374 TCCTGTTTTGGATGTGAAAGAATTAGTCATTTACTTTTGCTGTAACTGCTGTTGCATTTCTGGAT
66 TCCTGTTTTGGATGTGAAAGAATTAGTCATTTACTTTTGCTGTAACTGCTGTTGCATTTCTGGAT
7531439 ATTTGCAGACTAGTATTTTTCTTTCTTTGAAGTTTCTTTCTAAATATTGTCTTGAGTTTTATGAA
131 ATTTGCAGACTAGTATTTTTCTTTCTTTGAAGTTTCTTTCTAAATATTGTCTTGAGTTTTATGAA
7531504 AGCAAATGAACTGAATGATGAAATATTATAGGCAAATCTAGTGTGCAATTCTGGTAAAGCACTAA
196 AGCAAATGAACTGAATGATGAAATATTATAGGCAAATCTAGTGTGCAATTCTGGTAAAGCACTAA
7531569 ATGTTTATGAAATCTGGAGTTCGCTTTTTGATAGCTTTAAACAAGCATTACAAATCTCGGATACA
261 ATGTTTATGAAATCTGGAGTTCGCTTTTTGATAGCTTTAAACAAGCATTACAAATCTCGGATACA
7531634 AGTTGTTTAATGAAGAAACCCTCGAAATCTGTATGTCGATCGTTTAAACAATCATTTTCTTGGAT
326 AGTTGTTTAATGAAGAAACCCTCGAAATCTGTATGTCGATCGTTTAAACAATCATTTTCTTGGAT
7531699 GCAACTTGTTTAAT
391 GCAACTTGTTTAAT
7531713 GAAGGAAAGTTATTGCCATTTTGGCAATTCAAAATCTCAACTCCCAGTTGCTGGTGCTTTTTTTT
1 GAAGGAAAGTTATTGCCATTTTGGCAATTCAAAATCTCAACTCCCAGTTGCTGGTGCTTTTTTTT
7531778 TCCTGTTTTGGATGTGAAAGAATTAGTCATTTACTTTTGCTGTAACTGCTGTTGCATTTCTGGAT
66 TCCTGTTTTGGATGTGAAAGAATTAGTCATTTACTTTTGCTGTAACTGCTGTTGCATTTCTGGAT
7531843 ATTTGCAGACTAGTATTTTTCTTTCTTTGAAGTTTCTTTCTAAATATTGTCTTGAGTTTTATGAA
131 ATTTGCAGACTAGTATTTTTCTTTCTTTGAAGTTTCTTTCTAAATATTGTCTTGAGTTTTATGAA
7531908 AGCAAATGAACTGAATGATGAAATATTATAGGCAAATCTAGTGTGCAATTCTGGTAAAGCACTAA
196 AGCAAATGAACTGAATGATGAAATATTATAGGCAAATCTAGTGTGCAATTCTGGTAAAGCACTAA
7531973 ATGTTTATGAAATCTGGAGTTCGCTTTTTGATAGCTTTAAACAAGCATTACAAATCTCGGATACA
261 ATGTTTATGAAATCTGGAGTTCGCTTTTTGATAGCTTTAAACAAGCATTACAAATCTCGGATACA
7532038 AGTTGTTTAATGAAGAAACCCTCGAAATCTGTATGTCGATCGTTTAAACAATCATTTTCTTGGAT
326 AGTTGTTTAATGAAGAAACCCTCGAAATCTGTATGTCGATCGTTTAAACAATCATTTTCTTGGAT
7532103 GCAACTTGTTTAAT
391 GCAACTTGTTTAAT
7532117 GAAGGAAAGTTATTGCCATTTTGGCAATTCAAAATCTCAACTCCCAGTTGCTGGTGCTTTTTTTT
1 GAAGGAAAGTTATTGCCATTTTGGCAATTCAAAATCTCAACTCCCAGTTGCTGGTGCTTTTTTTT
7532182 TCCTGTTTTGGATGTGAAAGAATTAGTCATTTACTTTTGCTGTAACTGCTGTTGCATTTCTGGAT
66 TCCTGTTTTGGATGTGAAAGAATTAGTCATTTACTTTTGCTGTAACTGCTGTTGCATTTCTGGAT
7532247 ATTTGCAGACTAGTATTTTTCTTTCTTTGAAGTTTCTTTCTAAATATTGTCTTGAGTTTTATGAA
131 ATTTGCAGACTAGTATTTTTCTTTCTTTGAAGTTTCTTTCTAAATATTGTCTTGAGTTTTATGAA
7532312 AGCAAATGAACTGAATGATGAAATATTATAGGCAAATCTAGTGTGCAATTCTGGTAAAGCACTAA
196 AGCAAATGAACTGAATGATGAAATATTATAGGCAAATCTAGTGTGCAATTCTGGTAAAGCACTAA
7532377 ATGTTTATGAAATCTGGAGTTCGCTTTTTGATAGCTTTAAACAAGCATTACAAATCTCGGATACA
261 ATGTTTATGAAATCTGGAGTTCGCTTTTTGATAGCTTTAAACAAGCATTACAAATCTCGGATACA
7532442 AGTTGTTTAATGAAGAAACCCTCGAAATCTGTATGTCGATCGTTTAAACAATCATTTTCTTGGAT
326 AGTTGTTTAATGAAGAAACCCTCGAAATCTGTATGTCGATCGTTTAAACAATCATTTTCTTGGAT
7532507 GCAACTTGTTTAAT
391 GCAACTTGTTTAAT
7532521 GAAGGAA
1 GAAGGAA
7532528 CATAAGAAAG
Statistics
Matches: 815, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
404 815 1.00
ACGTcount: A:0.29, C:0.14, G:0.18, T:0.39
Consensus pattern (404 bp):
GAAGGAAAGTTATTGCCATTTTGGCAATTCAAAATCTCAACTCCCAGTTGCTGGTGCTTTTTTTT
TCCTGTTTTGGATGTGAAAGAATTAGTCATTTACTTTTGCTGTAACTGCTGTTGCATTTCTGGAT
ATTTGCAGACTAGTATTTTTCTTTCTTTGAAGTTTCTTTCTAAATATTGTCTTGAGTTTTATGAA
AGCAAATGAACTGAATGATGAAATATTATAGGCAAATCTAGTGTGCAATTCTGGTAAAGCACTAA
ATGTTTATGAAATCTGGAGTTCGCTTTTTGATAGCTTTAAACAAGCATTACAAATCTCGGATACA
AGTTGTTTAATGAAGAAACCCTCGAAATCTGTATGTCGATCGTTTAAACAATCATTTTCTTGGAT
GCAACTTGTTTAAT
Found at i:7552519 original size:14 final size:14
Alignment explanation
Indices: 7552511--7552540 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
7552501 AAATATATAT
7552511 AATATAATAAAGTA
1 AATATAATAAAGTA
*
7552525 AATATAATAAAATA
1 AATATAATAAAGTA
7552539 AA
1 AA
7552541 CAAGTAAATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.70, C:0.00, G:0.03, T:0.27
Consensus pattern (14 bp):
AATATAATAAAGTA
Found at i:7552539 original size:22 final size:23
Alignment explanation
Indices: 7552497--7552549 Score: 74
Period size: 22 Copynumber: 2.3 Consensus size: 23
7552487 CTTAATATTT
*
7552497 AAGTAAATATATATAATATAATA-
1 AAGTAAATATATATAAAATAA-AC
7552520 AAGTAAATATA-ATAAAATAAAC
1 AAGTAAATATATATAAAATAAAC
7552542 AAGTAAAT
1 AAGTAAAT
7552550 GAAACAAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 1 0.04
22 16 0.57
23 11 0.39
ACGTcount: A:0.64, C:0.02, G:0.06, T:0.28
Consensus pattern (23 bp):
AAGTAAATATATATAAAATAAAC
Found at i:7553560 original size:41 final size:41
Alignment explanation
Indices: 7553515--7553647 Score: 109
Period size: 37 Copynumber: 3.4 Consensus size: 41
7553505 TGACTTCGAG
*
7553515 TCGATGAGACATTGGGTGTCAATTTACTACTTCAGATTAAT
1 TCGATGAGACACTGGGTGTCAATTTACTACTTCAGATTAAT
* * * *
7553556 TCGATGATG-CACTGCGTGCCAATTTACT--TT--GGTTTAT
1 TCGATGA-GACACTGGGTGTCAATTTACTACTTCAGATTAAT
* * *
7553593 CCGATGAGACACTAGGTGTCAATTTATTACTTCA-AGTT-AT
1 TCGATGAGACACTGGGTGTCAATTTACTACTTCAGA-TTAAT
* *
7553633 CCGATGAGGCACTGG
1 TCGATGAGACACTGG
7553648 ATGCCAAACT
Statistics
Matches: 72, Mismatches: 13, Indels: 15
0.72 0.13 0.15
Matches are distributed among these distances:
36 1 0.01
37 26 0.36
39 4 0.06
40 15 0.21
41 25 0.35
42 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.22, T:0.35
Consensus pattern (41 bp):
TCGATGAGACACTGGGTGTCAATTTACTACTTCAGATTAAT
Found at i:7555013 original size:41 final size:39
Alignment explanation
Indices: 7554953--7555064 Score: 120
Period size: 37 Copynumber: 2.8 Consensus size: 39
7554943 TTTGACTACG
7554953 AGCCGATGAGACACTGGGTGTCAATCTATTATTTCAGATTA
1 AGCCGATGAGACACTGGGTGTCAA-CTATTATTTC-GATTA
** * * * *
7554994 ATTCGATGAGGCATTGGGTGCCAA-T-TTATTTCGATTT
1 AGCCGATGAGACACTGGGTGTCAACTATTATTTCGATTA
*
7555031 AGCCGATGAGTCACTGGGTGTCAACTTATTATTT
1 AGCCGATGAGACACTGGGTGTCAAC-TATTATTT
7555065 TGAATTATTC
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
37 23 0.40
38 7 0.12
39 2 0.04
40 6 0.11
41 19 0.33
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (39 bp):
AGCCGATGAGACACTGGGTGTCAACTATTATTTCGATTA
Found at i:7555880 original size:35 final size:31
Alignment explanation
Indices: 7555845--7555906 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
7555835 TGGTTGAATG
7555845 AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
1 AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
7555876 AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
1 AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
7555907 TGTAGGGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.23, C:0.06, G:0.26, T:0.45
Consensus pattern (31 bp):
AATGATTTTTGAGTTGCTTGGTGTCTAAGAT
Found at i:7557707 original size:50 final size:50
Alignment explanation
Indices: 7557583--7557831 Score: 275
Period size: 50 Copynumber: 4.8 Consensus size: 50
7557573 GATAATAACA
* * ** * *
7557583 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGAT-GG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCAT-CTCGG
* *
7557634 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
7557684 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* *
7557734 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATC-T-CGG
* * *
7557789 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
7557832 TTACCCAAAT
Statistics
Matches: 169, Mismatches: 22, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 92 0.54
51 33 0.20
53 2 0.01
54 1 0.01
55 2 0.01
56 38 0.22
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:7557761 original size:100 final size:104
Alignment explanation
Indices: 7557582--7557831 Score: 348
Period size: 100 Copynumber: 2.4 Consensus size: 104
7557572 TGATAATAAC
**
7557582 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCGTGATGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCGTGATGGTGCCCATGCCATG
* *
7557647 TCCCAGACATGGTCTTATAGGGGACCTCTC-ATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
* *
7557684 -TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGT-CTCGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGAT-GGTGCCCATGCCATG
7557747 TCCCAGACATGGTCTTACAGGGGACCTCTCATGATCTTAAGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTCA--ATCTTAAGG
* * *
7557789 ATGCCAATGCCATATCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
7557832 TTACCCAAAT
Statistics
Matches: 132, Mismatches: 9, Indels: 10
0.87 0.06 0.07
Matches are distributed among these distances:
99 1 0.01
100 50 0.38
101 36 0.27
103 3 0.02
104 1 0.01
105 2 0.02
106 39 0.30
ACGTcount: A:0.21, C:0.29, G:0.24, T:0.26
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCGTGATGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTCAATCTTAAGG
Found at i:7558203 original size:30 final size:30
Alignment explanation
Indices: 7558168--7558225 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
7558158 TCTCGACTCT
*
7558168 AACTTTTTCAAAATTACAATTTTGCCCCTA
1 AACTTTTACAAAATTACAATTTTGCCCCTA
* *
7558198 AACTTTTACATAATTACATTTTTGCCCC
1 AACTTTTACAAAATTACAATTTTGCCCC
7558226 AAGGCTCGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.31, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AACTTTTACAAAATTACAATTTTGCCCCTA
Found at i:7560678 original size:41 final size:42
Alignment explanation
Indices: 7560562--7560678 Score: 141
Period size: 41 Copynumber: 2.8 Consensus size: 42
7560552 TTGCATAAAA
*
7560562 CACCGGCATAAAGCCTGCTAGGCACAAAGCCTG-ATACATTT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGAATACATTT
* * *
7560603 CACCGGCATAAAGCCTGCTAGACATCAAGTCTGAATTA-A-TT
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGAA-TACATTT
* * *
7560644 CACCGGCATCAAGCCTGCTAGGCATTAGGCCTGAA
1 CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGAA
7560679 AATCTCAGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
41 61 0.94
42 2 0.03
43 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.21, T:0.21
Consensus pattern (42 bp):
CACCGGCATAAAGCCTGCTAGGCATAAAGCCTGAATACATTT
Found at i:7574965 original size:3 final size:3
Alignment explanation
Indices: 7574959--7574987 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
7574949 TTGTTGTTGT
7574959 TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TG
7574988 TTGCAGATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.31, G:0.34, T:0.34
Consensus pattern (3 bp):
TGC
Found at i:7587944 original size:27 final size:27
Alignment explanation
Indices: 7587906--7587991 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
7587896 GCCTGATCAG
* *
7587906 GCCAATTAAATTGGCGGCACCAAAGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
*
7587933 GCCAAATAAATTGGTGGCACCAATGGT
1 GCCAAATAAATTGGCGGCACCAATGGT
*
7587960 GCC-AATGTAATTGGCGGCACC-ATGGT
1 GCCAAAT-AAATTGGCGGCACCAATGGT
7587986 GCCAAA
1 GCCAAA
7587992 GGAAAAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
26 11 0.21
27 41 0.79
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (27 bp):
GCCAAATAAATTGGCGGCACCAATGGT
Found at i:7588090 original size:19 final size:19
Alignment explanation
Indices: 7588063--7588132 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
7588053 TCAACTCATT
*
7588063 TTTTTATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
*
7588082 TTTTAATTTAATAA-ACTA
1 TTTTAATTTAATAACTCTA
* *
7588100 TTATCATTTAATAACTCTA
1 TTTTAATTTAATAACTCTA
7588119 TTTTAATTTAATAA
1 TTTTAATTTAATAA
7588133 ACTATTAAGT
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
18 15 0.35
19 28 0.65
ACGTcount: A:0.39, C:0.09, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATTTAATAACTCTA
Found at i:7588111 original size:37 final size:37
Alignment explanation
Indices: 7588068--7588139 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
7588058 TCATTTTTTT
7588068 ATTTAATAACTCTATTTTAATTTAATAAACTATTATC
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTATC
7588105 ATTTAATAACTCTATTTTAATTTAATAAACTATTA
1 ATTTAATAACTCTATTTTAATTTAATAAACTATTA
7588140 AGTAATACTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.49
Consensus pattern (37 bp):
ATTTAATAACTCTATTTTAATTTAATAAACTATTATC
Found at i:7588449 original size:18 final size:19
Alignment explanation
Indices: 7588407--7588478 Score: 101
Period size: 19 Copynumber: 3.8 Consensus size: 19
7588397 TACTTAATAT
7588407 TTTATTAAATTAAAATAGA
1 TTTATTAAATTAAAATAGA
* *
7588426 TTTATTAAATGAGAATAG-
1 TTTATTAAATTAAAATAGA
7588444 TTTATTAAATTAAAATAGA
1 TTTATTAAATTAAAATAGA
* *
7588463 GTTATTAAATAAAAAT
1 TTTATTAAATTAAAAT
7588479 TGAGTCGAAG
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
18 16 0.35
19 30 0.65
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.40
Consensus pattern (19 bp):
TTTATTAAATTAAAATAGA
Found at i:7588449 original size:37 final size:37
Alignment explanation
Indices: 7588402--7588472 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
7588392 AGTATTACTT
* *
7588402 AATATTTTATTAAATTAAAATAGATTTATTAAATGAG
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
7588439 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 AATAGTTTATTAAATTAAAATAGAGTTATTAAAT
7588473 AAAAATTGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.42
Consensus pattern (37 bp):
AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
Found at i:7588735 original size:37 final size:37
Alignment explanation
Indices: 7588693--7588764 Score: 144
Period size: 37 Copynumber: 1.9 Consensus size: 37
7588683 AAGTATTACT
7588693 TAATAGTTTATTAAATTAAAATAGAGTTATTAAATGA
1 TAATAGTTTATTAAATTAAAATAGAGTTATTAAATGA
7588730 TAATAGTTTATTAAATTAAAATAGAGTTATTAAAT
1 TAATAGTTTATTAAATTAAAATAGAGTTATTAAAT
7588765 AAAAAAATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.42
Consensus pattern (37 bp):
TAATAGTTTATTAAATTAAAATAGAGTTATTAAATGA
Found at i:7588769 original size:19 final size:19
Alignment explanation
Indices: 7588700--7588768 Score: 97
Period size: 19 Copynumber: 3.7 Consensus size: 19
7588690 ACTTAATAGT
7588700 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * *
7588719 TTATTAAATGATAATAG-T
1 TTATTAAATTAAAATAGAG
7588737 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
7588756 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
7588769 AAATGAGTTG
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
18 20 0.47
19 23 0.53
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:7588916 original size:293 final size:291
Alignment explanation
Indices: 7588360--7589119 Score: 1315
Period size: 293 Copynumber: 2.6 Consensus size: 291
7588350 TCAATTTTTT
*
7588360 ATTTAATAACTCTATTTTAATTTAAAAAATTAAGTATTACTTAATATTTTATTAAATTAAAATAG
1 ATTTAATAACTCTATTTTAATTTAAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATAG
* * *
7588425 ATTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAATTGAGTCGAAGG
66 AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAATGAGTTGAAGG
7588490 GGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAACTTTAGT
131 GGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAACTTTAGT
* *
7588555 GCGCAAGCAGCAGAAATTCACTTTCAAAATTCAAAATGGTAAATTTGCATGTCAGGTCCTTGAAA
196 GCGCAAGCAGCAGAAATTCACTTTCAAAATTCAAAATGGTAAATTTGCATATCAGGTCCTTAAAA
*
7588620 CTGCAGATGGCCACTTAATTAGAATTCTCTC
261 CTGCAGATAGCCACTTAATTAGAATTCTCTC
7588651 ATTTAATAACTCTATTTTAATTTCAAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATA
1 ATTTAATAACTCTATTTTAATTT-AAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATA
*
7588716 GAGTTATTAAATGATAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAAATGAGTTGAA
65 GAGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAAT-AAAAAATGAGTTGAA
*
7588781 GGGGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAATTTTA
129 GGGGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAACTTTA
* * *
7588846 GTGCGCAAGCAGCAGCAATTCACTTTCAAAATTTAAAATGGTAAATTTGCATATTAGGTCCTTAA
194 GTGCGCAAGCAGCAGAAATTCACTTTCAAAATTCAAAATGGTAAATTTGCATATCAGGTCCTTAA
*
7588911 AACTGCAGATAGTCACTTAATTAGAATTCTCTC
259 AACTGCAGATAGCCACTTAATTAGAATTCTCTC
7588944 ATTTAATAACTCTATTTTAATTTAAAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATA
1 ATTTAATAACTCTATTTTAATTT-AAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATA
* *
7589009 GAGTTATTAAATGAGAATAGTTTATTTAATTAAAATAAAGTTATTAAATAAAAAATGAGTTGAA-
65 GAGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAATGAGTTGAAG
* * * *
7589073 GGGAATAAAAAGAAAATAATAAACAATGAGGACTTAGAAAGCAATTA
130 GGGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTA
7589120 CACACTTTTT
Statistics
Matches: 446, Mismatches: 21, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
291 66 0.15
292 102 0.23
293 278 0.62
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (291 bp):
ATTTAATAACTCTATTTTAATTTAAAAAATTAAGTATTACTTAATAGTTTATTAAATTAAAATAG
AGTTATTAAATGAGAATAGTTTATTAAATTAAAATAGAGTTATTAAATAAAAAATGAGTTGAAGG
GGAATAAAAAGAAAATAATAAATAAGGAGGGCTTAGAAGGCAATTAGCCACATTTCAACTTTAGT
GCGCAAGCAGCAGAAATTCACTTTCAAAATTCAAAATGGTAAATTTGCATATCAGGTCCTTAAAA
CTGCAGATAGCCACTTAATTAGAATTCTCTC
Found at i:7589017 original size:19 final size:19
Alignment explanation
Indices: 7588993--7589061 Score: 79
Period size: 19 Copynumber: 3.7 Consensus size: 19
7588983 ACTTAATAGT
7588993 TTATTAAATTAAAATAGAG
1 TTATTAAATTAAAATAGAG
* * *
7589012 TTATTAAATGAGAATAG-T
1 TTATTAAATTAAAATAGAG
* *
7589030 TTATTTAATTAAAATAAAG
1 TTATTAAATTAAAATAGAG
7589049 TTATTAAA-TAAAA
1 TTATTAAATTAAAA
7589062 AATGAGTTGA
Statistics
Matches: 40, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
18 18 0.45
19 22 0.55
ACGTcount: A:0.52, C:0.00, G:0.09, T:0.39
Consensus pattern (19 bp):
TTATTAAATTAAAATAGAG
Found at i:7589029 original size:37 final size:37
Alignment explanation
Indices: 7588987--7589057 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
7588977 AGTATTACTT
*
7588987 AATAGTTTATTAAATTAAAATAGAGTTATTAAATGAG
1 AATAGTTTATTAAATTAAAATAAAGTTATTAAATGAG
*
7589024 AATAGTTTATTTAATTAAAATAAAGTTATTAAAT
1 AATAGTTTATTAAATTAAAATAAAGTTATTAAAT
7589058 AAAAAATGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (37 bp):
AATAGTTTATTAAATTAAAATAAAGTTATTAAATGAG
Found at i:7589045 original size:18 final size:18
Alignment explanation
Indices: 7588987--7589045 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
7588977 AGTATTACTT
7588987 AATAGTTTATTAAATTAA
1 AATAGTTTATTAAATTAA
* * *
7589005 AATAGAGTTATTAAATGAG
1 AATAG-TTTATTAAATTAA
*
7589024 AATAGTTTATTTAATTAA
1 AATAGTTTATTAAATTAA
7589042 AATA
1 AATA
7589046 AAGTTATTAA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
18 18 0.55
19 15 0.45
ACGTcount: A:0.49, C:0.00, G:0.10, T:0.41
Consensus pattern (18 bp):
AATAGTTTATTAAATTAA
Found at i:7589283 original size:25 final size:24
Alignment explanation
Indices: 7589249--7589297 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
7589239 TGGTTTTTTT
7589249 TATATATTTTGGTAAATTAAAAAAA
1 TATATATTTTGGTAAA-TAAAAAAA
*
7589274 TATATTTTTTGGTAAATAAAAAAA
1 TATATATTTTGGTAAATAAAAAAA
7589298 GTTATAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.51, C:0.00, G:0.08, T:0.41
Consensus pattern (24 bp):
TATATATTTTGGTAAATAAAAAAA
Found at i:7591190 original size:21 final size:21
Alignment explanation
Indices: 7591165--7591227 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
7591155 CAACTTAATA
7591165 AACAAATACATCTAAAATAGT
1 AACAAATACATCTAAAATAGT
*
7591186 AAC-AA-A-AT-TAACA-A-T
1 AACAAATACATCTAAAATAGT
7591201 AACAAATACATCTAAAATAGT
1 AACAAATACATCTAAAATAGT
7591222 AACAAA
1 AACAAA
7591228 ATTAACAATA
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
15 4 0.12
16 3 0.09
17 5 0.15
18 4 0.12
19 5 0.15
20 3 0.09
21 10 0.29
ACGTcount: A:0.62, C:0.14, G:0.03, T:0.21
Consensus pattern (21 bp):
AACAAATACATCTAAAATAGT
Found at i:7591209 original size:36 final size:36
Alignment explanation
Indices: 7591165--7591238 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
7591155 CAACTTAATA
7591165 AACAAATACATCTAAAATAGTAACAAAATTAACAAT
1 AACAAATACATCTAAAATAGTAACAAAATTAACAAT
7591201 AACAAATACATCTAAAATAGTAACAAAATTAACAAT
1 AACAAATACATCTAAAATAGTAACAAAATTAACAAT
7591237 AA
1 AA
7591239 TAATAAAATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.62, C:0.14, G:0.03, T:0.22
Consensus pattern (36 bp):
AACAAATACATCTAAAATAGTAACAAAATTAACAAT
Found at i:7591237 original size:18 final size:18
Alignment explanation
Indices: 7591180--7591247 Score: 59
Period size: 18 Copynumber: 3.8 Consensus size: 18
7591170 ATACATCTAA
*
7591180 AATAGTAACAAAATTAAC
1 AATAATAACAAAATTAAC
* *
7591198 AATAACAA-ATACATCTAA-
1 AATAATAACA-AAAT-TAAC
*
7591216 AATAGTAACAAAATTAAC
1 AATAATAACAAAATTAAC
*
7591234 AATAATAATAAAAT
1 AATAATAACAAAAT
7591248 AATAGCAATA
Statistics
Matches: 38, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
17 4 0.11
18 30 0.79
19 4 0.11
ACGTcount: A:0.63, C:0.10, G:0.03, T:0.24
Consensus pattern (18 bp):
AATAATAACAAAATTAAC
Found at i:7593129 original size:19 final size:19
Alignment explanation
Indices: 7593085--7593129 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
7593075 GATAAAAATT
*
7593085 TTAAAAAATTAAAACATAG
1 TTAAAAAATAAAAACATAG
*
7593104 TTTAAAAATAAAAACA-ATG
1 TTAAAAAATAAAAACATA-G
7593123 TTAAAAA
1 TTAAAAA
7593130 TGTTTTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 1 0.05
19 21 0.95
ACGTcount: A:0.64, C:0.04, G:0.04, T:0.27
Consensus pattern (19 bp):
TTAAAAAATAAAAACATAG
Found at i:7594082 original size:9 final size:9
Alignment explanation
Indices: 7594068--7594107 Score: 53
Period size: 9 Copynumber: 4.4 Consensus size: 9
7594058 GTAGTGATTC
*
7594068 AATTCGATT
1 AATTCGGTT
*
7594077 AATTCGGGT
1 AATTCGGTT
*
7594086 AATCCGGTT
1 AATTCGGTT
7594095 AATTCGGTT
1 AATTCGGTT
7594104 AATT
1 AATT
7594108 TTTAATTAAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.28, C:0.12, G:0.20, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:7597169 original size:37 final size:37
Alignment explanation
Indices: 7597111--7597186 Score: 127
Period size: 37 Copynumber: 2.1 Consensus size: 37
7597101 ACTAAGAGAG
*
7597111 GATGCTGTTCTACTTAGAAAGGTGATAGGTTACATTT
1 GATGCTGTTCTACTTAGAAAGGTCATAGGTTACATTT
7597148 GATGCTGTTCTACCTTA-AAAGGTCATAGGTTACATTT
1 GATGCTGTTCTA-CTTAGAAAGGTCATAGGTTACATTT
7597185 GA
1 GA
7597187 GAAGGTAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
37 33 0.89
38 4 0.11
ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37
Consensus pattern (37 bp):
GATGCTGTTCTACTTAGAAAGGTCATAGGTTACATTT
Found at i:7604802 original size:27 final size:25
Alignment explanation
Indices: 7604759--7604810 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 25
7604749 ATGATAAATA
*
7604759 CATATATATATATATAGTAGCATAT
1 CATATATATAAATATAGTAGCATAT
*
7604784 CATATATATCAAATCATAGTAGGATAT
1 CATATATAT-AAAT-ATAGTAGCATAT
7604811 TCAAAAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 9 0.39
26 3 0.13
27 11 0.48
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.37
Consensus pattern (25 bp):
CATATATATAAATATAGTAGCATAT
Found at i:7605833 original size:81 final size:81
Alignment explanation
Indices: 7605769--7606325 Score: 302
Period size: 81 Copynumber: 7.1 Consensus size: 81
7605759 GCAATACTCG
* * *
7605769 CCACCCGCTCAAGGTCGCACACCACCTACACAAGCTCATTCACCACCAACGCAATACCCGCCACC
1 CCACCCACTCAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCACC
*
7605834 CACTCAAACTCATCCA
66 CACTCAAACGCATCCA
* * * * * *
7605850 CCACCTACTCAAGGTTGCACACCACCTACTCAAGCTCATCCACCACCAACACAATTCACACCACC
1 CCACCCACTCAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCACC
* * *
7605915 CACTCAAGCTCATCCT
66 CACTCAAACGCATCCA
* ** * ** * *
7605931 CCACCAAGACAA--TAC-C-CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACTCACCAC
1 CCACCCACTCAAGGT-CGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCAC
* *
7605992 CCAGTCAAACACATCCA
65 CCACTCAAACGCATCCA
* * * * ** * *
7606009 CCA-CCAATGCAA--T---AC-TCACC-GC-CAA-CTCAAT-CTCCACCAAGGCGATACCTGCCA
1 CCACCCACT-CAAGGTCGCACACCACCTACACAAGCTC-ATCCACCACCAACACAATACCCGCCA
* * *
7606063 CCCACTCAAGCTCATCCT
64 CCCACTCAAACGCATCCA
* ** ** * * * **
7606081 CCACCAAAGCAATACTTGC-CACC-CACT-CA-AGGC-CATCCACCACCCACACAA-ACTCATCC
1 CCACCCACTCAA-GGTCGCACACCAC-CTACACAAGCTCATCCACCACCAACACAATAC-CCGCC
* *
7606140 -TCCAC-C-AATGCAATACCCA
63 ACCCACTCAAACGC-AT--CCA
* * * *
7606159 CCACCCACTCAA--ACACATCCACCACCTACACAAGCTCATTCACCACCAACGCAATACCCGCCA
1 CCACCCACTCAAGGTCGCA--CACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCA
*
7606222 CCCACTCAAACTCATCCA
64 CCCACTCAAACGCATCCA
* * * * * *
7606240 CCACCTACTCAAGGTTGCACACCACCTACTCAAGCTCATCCTCCACCAAGACAATACCCACCACC
1 CCACCCACTCAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCACC
* *
7606305 CACTCAAGCTCATCCA
66 CACTCAAACGCATCCA
7606321 CCACC
1 CCACC
7606326 AAGGCAATAC
Statistics
Matches: 363, Mismatches: 79, Indels: 68
0.71 0.15 0.13
Matches are distributed among these distances:
72 41 0.11
73 8 0.02
74 1 0.00
75 8 0.02
76 4 0.01
77 12 0.03
78 95 0.26
79 6 0.02
80 3 0.01
81 171 0.47
82 6 0.02
83 5 0.01
84 3 0.01
ACGTcount: A:0.32, C:0.47, G:0.07, T:0.14
Consensus pattern (81 bp):
CCACCCACTCAAGGTCGCACACCACCTACACAAGCTCATCCACCACCAACACAATACCCGCCACC
CACTCAAACGCATCCA
Found at i:7605846 original size:39 final size:39
Alignment explanation
Indices: 7605788--7606361 Score: 400
Period size: 39 Copynumber: 14.6 Consensus size: 39
7605778 CAAGGTCGCA
* * *
7605788 CACCACCTACACAAGCTCATTCACCACCAACGCAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * * *
7605827 CGCCACCCACTCAAACTCATCCACCACCTACTCAAGGTTGCA
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAA---TACC
* * * *
7605869 CACCACCTACTCAAGCTCATCCACCACCAACACAATTCA
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
*
7605908 CACCACCCACTCAAGCTCATCCTCCACCAA-GACAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACG-CAATACC
* * *
7605947 CACCACCTACTCAAGCTCATCCACCACCAAGGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * *
7605986 CACCACCCAGTCAAACACATCCACCACCAATGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * *
7606025 CACCGCCAACTCAA--TC-T---CCACCAAGGCGATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
** * * *
7606058 TGCCACCCACTCAAGCTCATCCTCCACCAAAGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
** * * *
7606097 TGCCACCCACTCAAGGC-CATCCACCACCCACACAA-ACT
1 CACCACCCACTCAA-GCTCATCCACCACCAACGCAATACC
* * * * *
7606135 CATCC-TCCAC-CAATGCAAT-ACCCACCACCCACTCAAACACATC
1 CA-CCACCCACTCAA-GC--TCATCCACCACCAACGC-AATAC--C
* * *
7606178 CACCACCTACACAAGCTCATTCACCACCAACGCAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * * * * *
7606217 CGCCACCCACTCAAACTCATCCACCACCTACTCAAGGTTGCA
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAA---TACC
* *
7606259 CACCACCTACTCAAGCTCATCCTCCACCAA-GACAATACC
1 CACCACCCACTCAAGCTCATCCACCACCAACG-CAATACC
* *
7606298 CACCACCCACTCAAGCTCATCCACCACCAAGGCAATACT
1 CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
* * *
7606337 CGCCACCCACTCAAACACATCCACC
1 CACCACCCACTCAAGCTCATCCACC
7606362 GCCCACACAG
Statistics
Matches: 424, Mismatches: 83, Indels: 56
0.75 0.15 0.10
Matches are distributed among these distances:
33 23 0.05
35 2 0.00
36 2 0.00
37 6 0.01
38 7 0.02
39 286 0.67
40 6 0.01
41 7 0.02
42 75 0.18
43 7 0.02
44 3 0.01
ACGTcount: A:0.33, C:0.47, G:0.06, T:0.14
Consensus pattern (39 bp):
CACCACCCACTCAAGCTCATCCACCACCAACGCAATACC
Found at i:7605852 original size:60 final size:60
Alignment explanation
Indices: 7605744--7605862 Score: 159
Period size: 60 Copynumber: 2.0 Consensus size: 60
7605734 CCATTGAAAG
* * **
7605744 TCATCCACCACCAACGCAATACTCGCCACCCGCTCAAGGTCGCACACCACCTACACAAGC
1 TCATCCACCACCAACGCAATACCCGCCACCCACTCAAACTCGCACACCACCTACACAAGC
* * *
7605804 TCATTCACCACCAACGCAATACCCGCCACCCACTCAAACTCATC-CACCACCTACTCAAG
1 TCATCCACCACCAACGCAATACCCGCCACCCACTCAAACTC-GCACACCACCTACACAAG
7605863 GTTGCACACC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
60 50 0.98
61 1 0.02
ACGTcount: A:0.31, C:0.47, G:0.08, T:0.13
Consensus pattern (60 bp):
TCATCCACCACCAACGCAATACCCGCCACCCACTCAAACTCGCACACCACCTACACAAGC
Found at i:7605853 original size:21 final size:21
Alignment explanation
Indices: 7605788--7605974 Score: 117
Period size: 21 Copynumber: 9.3 Consensus size: 21
7605778 CAAGGTCGCA
* *
7605788 CACCACCTACACAAGCTCATT
1 CACCACCTACTCAAGCTCATC
* * *
7605809 CACCACCAACGCAA--T-ACC
1 CACCACCTACTCAAGCTCATC
* * *
7605827 CGCCACCCACTCAAACTCATC
1 CACCACCTACTCAAGCTCATC
*
7605848 CACCACCTACTCAAGGT--TGC
1 CACCACCTACTCAAGCTCAT-C
7605868 ACACCACCTACTCAAGCTCATC
1 -CACCACCTACTCAAGCTCATC
* * *
7605890 CACCACCAACACAA-TTCA--
1 CACCACCTACTCAAGCTCATC
*
7605908 CACCACCCACTCAAGCTCATC
1 CACCACCTACTCAAGCTCATC
* * ** *
7605929 CTCCACCAAGACAA--T-ACC
1 CACCACCTACTCAAGCTCATC
7605947 CACCACCTACTCAAGCTCATC
1 CACCACCTACTCAAGCTCATC
7605968 CACCACC
1 CACCACC
7605975 AAGGCAATAC
Statistics
Matches: 124, Mismatches: 29, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
18 36 0.29
19 6 0.05
20 6 0.05
21 74 0.60
22 1 0.01
23 1 0.01
ACGTcount: A:0.33, C:0.48, G:0.05, T:0.14
Consensus pattern (21 bp):
CACCACCTACTCAAGCTCATC
Found at i:7605989 original size:18 final size:18
Alignment explanation
Indices: 7605968--7606033 Score: 60
Period size: 18 Copynumber: 3.5 Consensus size: 18
7605958 CAAGCTCATC
7605968 CACCACCAAGGCAATACT
1 CACCACCAAGGCAATACT
* * *
7605986 CACCACCCAGTCAAACACAT
1 CACCACCAAGGC-AATAC-T
*
7606006 CCACCACCAATGCAATACT
1 -CACCACCAAGGCAATACT
*
7606025 CACCGCCAA
1 CACCACCAA
7606034 CTCAATCTCC
Statistics
Matches: 37, Mismatches: 8, Indels: 6
0.73 0.16 0.12
Matches are distributed among these distances:
18 18 0.49
19 5 0.14
20 5 0.14
21 9 0.24
ACGTcount: A:0.38, C:0.44, G:0.08, T:0.11
Consensus pattern (18 bp):
CACCACCAAGGCAATACT
Found at i:7605991 original size:21 final size:22
Alignment explanation
Indices: 7605962--7606026 Score: 68
Period size: 18 Copynumber: 3.2 Consensus size: 22
7605952 CCTACTCAAG
7605962 CTCATCCACCACCAAGGCAATA
1 CTCATCCACCACCAAGGCAATA
*
7605984 CTCA-CCA-C-CC-AGTCAA-A
1 CTCATCCACCACCAAGGCAATA
* *
7606001 CACATCCACCACCAATGCAATA
1 CTCATCCACCACCAAGGCAATA
7606023 CTCA
1 CTCA
7606027 CCGCCAACTC
Statistics
Matches: 33, Mismatches: 5, Indels: 10
0.69 0.10 0.21
Matches are distributed among these distances:
17 4 0.12
18 8 0.24
19 3 0.09
20 3 0.09
21 7 0.21
22 8 0.24
ACGTcount: A:0.37, C:0.43, G:0.06, T:0.14
Consensus pattern (22 bp):
CTCATCCACCACCAAGGCAATA
Found at i:7606010 original size:60 final size:60
Alignment explanation
Indices: 7605946--7607240 Score: 365
Period size: 60 Copynumber: 22.1 Consensus size: 60
7605936 AAGACAATAC
* * *
7605946 CCACCACCTACTCAAGCTCATCCACCACCAAGGCAATACTCACCACCCAGTCAAACACAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * ** *
7606006 CCACCA-CCAATGCAA--T-A-CTCACCGCCAACTCAAT-CT--CCACCAAGGCGATAC-C-T
1 CCACCACCCACT-CAAGCTCATC-CACCACCAACGCAATACTCACCACCCACTC-AAACACAT
* * * ** *
7606059 --GCCACCCACTCAAGCTCATCCTCCACCAAAGCAATACTTGCCACCCACTCAAGGC-CAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAA-ACACAT
* * * * *
7606117 CCACCACCCACACAAACTCATCCTCCACCAATGCAATACCCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * *
7606177 CCACCACCTACACAAGCTCATTCACCACCAACGCAATACCCGCCACCCACTCAAACTCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * *
7606237 CCACCACCTACTCAAGGT--TGCACACCACCTACTCAA-GCTCATCC-TCCAC-CAAGACA-AT
1 CCACCACCCACTCAAGCTCAT-C-CACCACCAACGCAATACTCA-CCACCCACTCAA-ACACAT
* *
7606295 ACCCACCACCCACTCAAGCTCATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACAT
1 --CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * *
7606357 CCACCGCCCACAC-AGACTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAG-CTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * ** *
7606417 CCACCA-CCAATGCAA--T-A-CTCACCGCCAACTCAA-ACT--CCACCTAGGC-AATAC--
1 CCACCACCCACT-CAAGCTCATC-CACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * *
7606468 CCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCGCCACCCCCTCAAGGC-CAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAA-ACACAT
* * * * * * * * *
7606528 CCACCACCAACTCAAACTCCTCCA-CA--AAGGCAATACCCGCCTCCCACTCAAGCTCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * * * * * ***
7606585 TCACCACCAACACAATACTC-GCCACCTACTCAAGGCCAT-C-CGCCACCCATTCAAGTTCAT
1 CCACCACCCACTCAA-GCTCATCCACC-AC-CAACGCAATACTCACCACCCACTCAAACACAT
* * ** * * * * * *
7606645 CCTCCACCAAGGC-AGTACTC-GCCACCCATTCAAGGCCAT-C-CACCA-CCAATGC-AATAC--
1 CCACCACCCACTCAAG--CTCATCCA-CCA-CCAACGCAATACTCACCACCCACT-CAAACACAT
* * * * ** ** *
7606702 CCACCACCCACTCAA-ATACATCCACCGCCAACTCAA-ACTCCTCCACAAAGGC-AATAC--
1 CCACCACCCACTCAAGCT-CATCCACCACCAACGCAATACT-CACCACCCACTCAAACACAT
* * * * * *
7606759 CCGCCACCCACTCAAGCTCATTCACCACCAACACAATACTCGCCACCCACTCAAGCTCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * ** * * ** * *
7606819 CCTCCACCAAGGCAA--T-ACCCACCACCCATTCAA-GCTCATCCA-CCAC-CAAGGCA-AT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCA-CCACCCACTCAA-ACACAT
* * * * * *
7606874 ACTCGCCACCCACTCAGGGC-CATCCACCACCTACACTA-ACTCACC-CTCCAC-CAAGGCA-AT
1 -C-CACCACCCACTCA-AGCTCATCCACCACCAACGCAATACTCACCAC-CCACTCAA-ACACAT
* * * * * ** *
7606934 GCCCACCACCCACTCAAACACATCCACCACCAACTCAA-ACTCCTCCACCAAGGC-AATAC--
1 --CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACT-CACCACCCACTCAAACACAT
* * * * * * * * * *
7606993 CCGCCACCTACTCAAGCACATCCACCACCAAGGCTATACCCACCACCTATTCAAGCTCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * * * *
7607053 CCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
* * * * * * * *
7607113 CCGCCACCCACTCAAACCCATCCACCACCCACTCAA-ACACATCCA-CCGC-C-AACGCAAT
1 CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCA-CCACCCACTCAAACAC-AT
* * * * *
7607171 ACCCGCCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCACCCATTCAAACACAT
1 --CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
7607233 CCACCACC
1 CCACCACC
7607241 AATGCAATAC
Statistics
Matches: 923, Mismatches: 216, Indels: 192
0.69 0.16 0.14
Matches are distributed among these distances:
51 14 0.02
52 8 0.01
53 7 0.01
54 39 0.04
55 22 0.02
56 22 0.02
57 203 0.22
58 32 0.03
59 37 0.04
60 489 0.53
61 28 0.03
62 18 0.02
63 4 0.00
ACGTcount: A:0.32, C:0.47, G:0.07, T:0.13
Consensus pattern (60 bp):
CCACCACCCACTCAAGCTCATCCACCACCAACGCAATACTCACCACCCACTCAAACACAT
Found at i:7606013 original size:120 final size:118
Alignment explanation
Indices: 7605786--7606361 Score: 445
Period size: 120 Copynumber: 4.9 Consensus size: 118
7605776 CTCAAGGTCG
* * * * *
7605786 CACACCACCTACACAAGCTCATTCACCACCAACG-CAATACCCGCCACCCACTCAAACTCATCCA
1 CACACCACC-ACTCAAGCTCATCCTCCACCAA-GACAATACCCACCACCCACTCAAGCTCATCCA
* ** * * * * * *
7605850 CCACCTACTCAAGGTTGCACACCACCTACTCAAGCTCATCCACCACCA--ACACAATT
64 CCACCAAGGCAA---TACTCGCCACCCACTCAAACACATCCACCACCACCACACAATT
*
7605906 CACACCACCCACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCTACTCAAGCTCATCCAC
1 CACACCA-CCACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCCAC
* * **
7605971 CACCAAGGCAATACTCACCACCCAGTCAAACACATCCACCACCA--ATGCAA-T
65 CACCAAGGCAATACTCGCCACCCACTCAAACACATCCACCACCACCACACAATT
* * * * ** *
7606022 -AC-TCACCGC-CAA-CTCAAT-CTCCACCAAGGCGATACCTGCCACCCACTCAAGCTCATCCTC
1 CACACCACCACTCAAGCTC-ATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCCAC
* * * *
7606082 CACCAAAGCAATACTTGCCACCCACTCAAGGC-CATCCACCA-C-CCACACAAACT
65 CACCAAGGCAATACTCGCCACCCACTCAA-ACACATCCACCACCACCACAC-AATT
* * * * * * *
7606135 CATCCTCCACCAATGCAATACCCA-CCACCCACTCAA-ACACAT--CCACCACCTACACAAGCTC
1 CA--CACCACCACT-CAA-GCTCATCC-TCCAC-CAAGACA-ATACCCACCACCCACTCAAGCTC
* * * * **
7606196 ATTCACCACCAACGCAATACCCGCCACCCACTCAAACTCATCCACCACCTACTCA-A-GGTT
59 ATCCACCACCAAGGCAATACTCGCCACCCACTCAAACACATCCACCACC-AC-CACACAATT
7606256 GCACACCACCTACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCCA
1 -CACACCACC-ACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCCA
7606321 CCACCAAGGCAATACTCGCCACCCACTCAAACACATCCACC
64 CCACCAAGGCAATACTCGCCACCCACTCAAACACATCCACC
7606362 GCCCACACAG
Statistics
Matches: 362, Mismatches: 63, Indels: 62
0.74 0.13 0.13
Matches are distributed among these distances:
110 1 0.00
111 75 0.21
112 8 0.02
113 4 0.01
114 3 0.01
115 2 0.01
116 2 0.01
117 35 0.10
118 5 0.01
119 15 0.04
120 188 0.52
121 13 0.04
122 7 0.02
123 2 0.01
124 2 0.01
ACGTcount: A:0.33, C:0.47, G:0.06, T:0.14
Consensus pattern (118 bp):
CACACCACCACTCAAGCTCATCCTCCACCAAGACAATACCCACCACCCACTCAAGCTCATCCACC
ACCAAGGCAATACTCGCCACCCACTCAAACACATCCACCACCACCACACAATT
Found at i:7606521 original size:72 final size:72
Alignment explanation
Indices: 7606379--7606514 Score: 200
Period size: 72 Copynumber: 1.9 Consensus size: 72
7606369 CAGACTCATC
* *
7606379 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAATGCAATACTCACCGCCA
1 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
7606444 ACTCAAA
66 ACTCAAA
* * * * * *
7606451 CTCCACCTAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCGCCACC
1 CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACC
7606515 CCCTCAAGGC
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 56 1.00
ACGTcount: A:0.32, C:0.47, G:0.08, T:0.12
Consensus pattern (72 bp):
CTCCACCAAGGCAATACCCACCACCCACTCAAACACATCCACCACCAAGGCAATACTCACCACCA
ACTCAAA
Found at i:7606522 original size:39 final size:39
Alignment explanation
Indices: 7606373--7606537 Score: 155
Period size: 39 Copynumber: 4.4 Consensus size: 39
7606363 CCCACACAGA
* *
7606373 CTCATCCTCCACCAAGGCAATACCCACCACCCACTCAAA
1 CTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAG
* * * * *
7606412 CACATCCACCACCAATGCAATA--C-TCA-CCGC-CAA-
1 CTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAG
** *
7606445 CTCAAACTCCACCTAGGCAATACCCGCCACCCACTCAAG
1 CTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAG
* *
7606484 CTCATCCTCCACCAAGGCAATACTCGCCACCCCCTCAAGG
1 CTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAA-G
*
7606524 C-CATCCACCACCAA
1 CTCATCCTCCACCAA
7606538 CTCAAACTCC
Statistics
Matches: 100, Mismatches: 19, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
33 16 0.16
34 3 0.03
35 4 0.04
36 4 0.04
37 4 0.04
38 3 0.03
39 64 0.64
40 2 0.02
ACGTcount: A:0.32, C:0.48, G:0.08, T:0.13
Consensus pattern (39 bp):
CTCATCCTCCACCAAGGCAATACCCGCCACCCACTCAAG
Found at i:7606552 original size:57 final size:58
Alignment explanation
Indices: 7606488--7606604 Score: 157
Period size: 57 Copynumber: 2.0 Consensus size: 58
7606478 CTCAAGCTCA
* * * *
7606488 TCCTCCACCAAGGCAATACTCGCCACCCCCTCAAGGC-CATCCACCACCAACTCAA-AC
1 TCCTCCACAAAGGCAATACCCGCCACCCACTCAA-GCTCATCCACCACCAACACAATAC
* *
7606545 TCCTCCACAAAGGCAATACCCGCCTCCCACTCAAGCTCATTCACCACCAACACAATAC
1 TCCTCCACAAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATAC
7606603 TC
1 TC
7606605 GCCACCTACT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 2 0.04
57 46 0.88
58 4 0.08
ACGTcount: A:0.31, C:0.47, G:0.08, T:0.15
Consensus pattern (58 bp):
TCCTCCACAAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATAC
Found at i:7606566 original size:96 final size:96
Alignment explanation
Indices: 7606459--7606828 Score: 456
Period size: 96 Copynumber: 3.8 Consensus size: 96
7606449 AACTCCACCT
* ** *
7606459 AGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCGCCACCCCCTCAAGG
1 AGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATACTCGCCACCCACTCAAGG
7606524 CCATCCACCACCAACTCAAACTCCTCCACAA
66 CCATCCACCACCAACTCAAACTCCTCCACAA
* * *
7606555 AGGCAATACCCGCCTCCCACTCAAGCTCATTCACCACCAACACAATACTCGCCACCTACTCAAGG
1 AGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATACTCGCCACCCACTCAAGG
* * * * *
7606620 CCATCCGCCACCCATTCAAGTTCATCCTCCACCA
66 CCATCCACCACCAACTCAA--AC-TCCTCCACAA
* * * ** * * *
7606654 AGGCAGTACTCGCCACCCATTCAAGGC-CATCCACCACCAATGCAATACCCACCACCCACTCAAA
1 AGGCAATACCCGCCACCCACTCAA-GCTCATCCACCACCAACACAATACTCGCCACCCACTCAAG
** *
7606718 TACATCCACCGCCAACTCAAACTCCTCCACAA
65 GCCATCCACCACCAACTCAAACTCCTCCACAA
*
7606750 AGGCAATACCCGCCACCCACTCAAGCTCATTCACCACCAACACAATACTCGCCACCCACTCAA-G
1 AGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATACTCGCCACCCACTCAAGG
*
7606814 CTCATCCTCCACCAA
66 C-CATCCACCACCAA
7606829 GGCAATACCC
Statistics
Matches: 225, Mismatches: 43, Indels: 12
0.80 0.15 0.04
Matches are distributed among these distances:
95 2 0.01
96 146 0.65
97 1 0.00
98 1 0.00
99 73 0.32
100 2 0.01
ACGTcount: A:0.31, C:0.46, G:0.09, T:0.14
Consensus pattern (96 bp):
AGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAACACAATACTCGCCACCCACTCAAGG
CCATCCACCACCAACTCAAACTCCTCCACAA
Found at i:7606638 original size:21 final size:21
Alignment explanation
Indices: 7606604--7606691 Score: 56
Period size: 21 Copynumber: 4.3 Consensus size: 21
7606594 ACACAATACT
* *
7606604 CGCCACCTACTCAAGGCCATC
1 CGCCACCCATTCAAGGCCATC
**
7606625 CGCCACCCATTCAAGTTCATC
1 CGCCACCCATTCAAGGCCATC
* * ** **
7606646 CTCCACCAAGGC-AGTAC-T-
1 CGCCACCCATTCAAGGCCATC
7606664 CGCCACCCATTCAAGGCCATC
1 CGCCACCCATTCAAGGCCATC
*
7606685 CACCACC
1 CGCCACC
7606692 AATGCAATAC
Statistics
Matches: 48, Mismatches: 16, Indels: 6
0.69 0.23 0.09
Matches are distributed among these distances:
18 8 0.17
19 4 0.08
20 5 0.10
21 31 0.65
ACGTcount: A:0.25, C:0.47, G:0.12, T:0.16
Consensus pattern (21 bp):
CGCCACCCATTCAAGGCCATC
Found at i:7606668 original size:39 final size:39
Alignment explanation
Indices: 7606624--7606716 Score: 114
Period size: 39 Copynumber: 2.4 Consensus size: 39
7606614 TCAAGGCCAT
** * *
7606624 CCGCCACCCATTCAAGTTCATCCTCCACCAAGGCAGTAC
1 CCGCCACCCATTCAAGGCCATCCACCACCAAGGCAATAC
* *
7606663 TCGCCACCCATTCAAGGCCATCCACCACCAATGCAATAC
1 CCGCCACCCATTCAAGGCCATCCACCACCAAGGCAATAC
* *
7606702 CCACCACCCACTCAA
1 CCGCCACCCATTCAA
7606717 ATACATCCAC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 45 1.00
ACGTcount: A:0.29, C:0.46, G:0.10, T:0.15
Consensus pattern (39 bp):
CCGCCACCCATTCAAGGCCATCCACCACCAAGGCAATAC
Found at i:7606724 original size:39 final size:39
Alignment explanation
Indices: 7606627--7606732 Score: 113
Period size: 39 Copynumber: 2.7 Consensus size: 39
7606617 AGGCCATCCG
* * * * *
7606627 CCACCCATTCAAGTTCATCCTCCACCAAGGCAGTACTCG
1 CCACCCATTCAAGTACATCCACCACCAAGGCAATACCCA
** *
7606666 CCACCCATTCAAGGCCATCCACCACCAATGCAATACCCA
1 CCACCCATTCAAGTACATCCACCACCAAGGCAATACCCA
* * *
7606705 CCACCCACTCAAATACATCCACCGCCAA
1 CCACCCATTCAAGTACATCCACCACCAA
7606733 CTCAAACTCC
Statistics
Matches: 55, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 55 1.00
ACGTcount: A:0.31, C:0.45, G:0.08, T:0.15
Consensus pattern (39 bp):
CCACCCATTCAAGTACATCCACCACCAAGGCAATACCCA
Found at i:7606735 original size:195 final size:195
Alignment explanation
Indices: 7606451--7606826 Score: 576
Period size: 195 Copynumber: 1.9 Consensus size: 195
7606441 CCAACTCAAA
* * * *
7606451 CTCCACCTAGGCAATACCCGCCACCCACTCAAGCTCATCCTCCACCAAGGCAATACTCGCCACCC
1 CTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAAGGCAATACCCACCACCC
* * * *
7606516 CCTCAAGGCCATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCTCCCACTCAAGC
66 ACTCAAAGACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACTCAAGC
*
7606581 TCATTCACCACCAACACAATACTCGCCACCTACTCAAGGC-CATCCGCCACCCATTCAAGTTCAT
131 TCATTCACCACCAACACAATACTCGCCACCCACTCAA-GCTCATCCGCCACCCATTCAAGTTCAT
7606645 C
195 C
* * * *
7606646 CTCCACCAAGGCAGTACTCGCCACCCATTCAAGGC-CATCCACCACCAATGCAATACCCACCACC
1 CTCCACCAAGGCAATACCCGCCACCCACTCAA-GCTCATCCACCACCAAGGCAATACCCACCACC
* *
7606710 CACTCAAATACATCCACCGCCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACTCAAG
65 CACTCAAAGACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACTCAAG
*
7606775 CTCATTCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCTCCACC
130 CTCATTCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCGCCACC
7606827 AAGGCAATAC
Statistics
Matches: 163, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
194 2 0.01
195 159 0.98
196 2 0.01
ACGTcount: A:0.30, C:0.47, G:0.09, T:0.15
Consensus pattern (195 bp):
CTCCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCACCACCAAGGCAATACCCACCACCC
ACTCAAAGACATCCACCACCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACCCACTCAAGC
TCATTCACCACCAACACAATACTCGCCACCCACTCAAGCTCATCCGCCACCCATTCAAGTTCATC
Found at i:7606786 original size:21 final size:21
Alignment explanation
Indices: 7606762--7606818 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 21
7606752 GCAATACCCG
7606762 CCACCCACTCAAGCTCATTCA
1 CCACCCACTCAAGCTCATTCA
* * * *
7606783 CCACCAACACAA--T-ACTCG
1 CCACCCACTCAAGCTCATTCA
7606801 CCACCCACTCAAGCTCAT
1 CCACCCACTCAAGCTCAT
7606819 CCTCCACCAA
Statistics
Matches: 26, Mismatches: 7, Indels: 6
0.67 0.18 0.15
Matches are distributed among these distances:
18 13 0.50
19 1 0.04
20 1 0.04
21 11 0.42
ACGTcount: A:0.32, C:0.47, G:0.05, T:0.16
Consensus pattern (21 bp):
CCACCCACTCAAGCTCATTCA
Found at i:7606796 original size:39 final size:39
Alignment explanation
Indices: 7606744--7607060 Score: 245
Period size: 39 Copynumber: 8.1 Consensus size: 39
7606734 TCAAACTCCT
* *
7606744 CCACAAAGGCAATACCCGCCACCCACTCAAGCTCATTCA
1 CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCA
** * *
7606783 CCACCAACACAATACTCGCCACCCACTCAAGCTCATCCT
1 CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCA
* *
7606822 CCACCAAGGCAATACCCACCACCCATTCAAGCTCATCCA
1 CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCA
* *
7606861 CCACCAAGGCAATACTCGCCACCCACTCAGGGC-CATCCA
1 CCACCAAGGCAATACCCGCCACCCACTCA-AGCTCATCCA
* ** * * ** *
7606900 CCACCTACACTAACTCACCCTCCACCAAGGCAATGCCCA-CCA
1 CCACCAAGGC-AA-T-ACCCGCCACCCACTCAA-GCTCATCCA
* * * * *
7606942 CCCACTCAA-ACACAT--CCACCACCAACTCAA--AC-TCCT
1 -CCAC-CAAGGCA-ATACCCGCCACCCACTCAAGCTCATCCA
* *
7606978 CCACCAAGGCAATACCCGCCACCTACTCAAGCACATCCA
1 CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCA
* * * *
7607017 CCACCAAGGCTATACCCACCACCTATTCAAGCTCATCCA
1 CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCA
7607056 CCACC
1 CCACC
7607061 CACTCAAACA
Statistics
Matches: 223, Mismatches: 39, Indels: 32
0.76 0.13 0.11
Matches are distributed among these distances:
34 5 0.02
35 6 0.03
36 16 0.07
38 2 0.01
39 160 0.72
40 4 0.02
41 1 0.00
42 18 0.08
43 9 0.04
44 2 0.01
ACGTcount: A:0.32, C:0.47, G:0.08, T:0.13
Consensus pattern (39 bp):
CCACCAAGGCAATACCCGCCACCCACTCAAGCTCATCCA
Found at i:7606962 original size:21 final size:21
Alignment explanation
Indices: 7606936--7607159 Score: 112
Period size: 21 Copynumber: 11.2 Consensus size: 21
7606926 AAGGCAATGC
7606936 CCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACACAT
*
7606957 CCACCACCAACTC-AA-AC-T
1 CCACCACCCACTCAAACACAT
* * ** *
7606975 CCTCCACCAAGGC-AATAC--
1 CCACCACCCACTCAAACACAT
* * *
7606993 CCGCCACCTACTCAAGCACAT
1 CCACCACCCACTCAAACACAT
* ** * *
7607014 CCACCACCAAGGC-TATAC--
1 CCACCACCCACTCAAACACAT
* * * *
7607032 CCACCACCTATTCAAGCTCAT
1 CCACCACCCACTCAAACACAT
7607053 CCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACACAT
* * * *
7607074 CCACCGCCAACGC-AATAC--
1 CCACCACCCACTCAAACACAT
* * * *
7607092 CCGCCACCCACACAAGCTCAT
1 CCACCACCCACTCAAACACAT
* *
7607113 CCGCCACCCACTCAAACCCAT
1 CCACCACCCACTCAAACACAT
7607134 CCACCACCCACTCAAACACAT
1 CCACCACCCACTCAAACACAT
7607155 CCACC
1 CCACC
7607160 GCCAACGCAA
Statistics
Matches: 149, Mismatches: 44, Indels: 20
0.70 0.21 0.09
Matches are distributed among these distances:
18 41 0.28
19 10 0.07
20 8 0.05
21 90 0.60
ACGTcount: A:0.33, C:0.50, G:0.05, T:0.11
Consensus pattern (21 bp):
CCACCACCCACTCAAACACAT
Found at i:7607039 original size:156 final size:156
Alignment explanation
Indices: 7606818--7607139 Score: 387
Period size: 156 Copynumber: 2.1 Consensus size: 156
7606808 CTCAAGCTCA
* * * *
7606818 TCCTCCACCAAGGCAATACCCACCACCCATTCAAGCTCATCCACCACCAAGGCAATACTCGCCAC
1 TCCTCCACCAAGGCAATACCCACCACCCACTCAAGCACATCCACCACCAAGGCAATACCCACCAC
* * * * * * *
7606883 CCACTCAGGGC-CATCCACCACCTACACTAACTCACCCTCCACCAAGGCAATGCCCACCACCCAC
66 CCACTCA-AGCTCATCCACCACCCACACAAACACACCCACCACCAACGCAATACCCACCACCCAC
*
7606947 TCAAACACATCCACCACCAACTCAAAC
130 ACAAACACATCCACCACCAACTCAAAC
* * *
7606974 TCCTCCACCAAGGCAATACCCGCCACCTACTCAAGCACATCCACCACCAAGGCTATACCCACCAC
1 TCCTCCACCAAGGCAATACCCACCACCCACTCAAGCACATCCACCACCAAGGCAATACCCACCAC
* * * * * *
7607039 CTATTCAAGCTCATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACA
66 CCACTCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACGCAATACCCACCACCCACA
* * * *
7607104 CAAGCTCATCCGCCACCCACTCAAAC
131 CAAACACATCCACCACCAACTCAAAC
7607130 -CCATCCACCA
1 TCC-TCCACCA
7607140 CCCACTCAAA
Statistics
Matches: 139, Mismatches: 25, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
155 4 0.03
156 135 0.97
ACGTcount: A:0.32, C:0.49, G:0.07, T:0.12
Consensus pattern (156 bp):
TCCTCCACCAAGGCAATACCCACCACCCACTCAAGCACATCCACCACCAAGGCAATACCCACCAC
CCACTCAAGCTCATCCACCACCCACACAAACACACCCACCACCAACGCAATACCCACCACCCACA
CAAACACATCCACCACCAACTCAAAC
Found at i:7607078 original size:39 final size:38
Alignment explanation
Indices: 7606996--7607078 Score: 87
Period size: 39 Copynumber: 2.1 Consensus size: 38
7606986 GCAATACCCG
* *
7606996 CCACCTACTCAAGCACATCCACCACCAAGGCTATACCCA
1 CCACCTACTCAAGCACATCCACCACCAA-GCTAAACACA
* * *
7607035 CCACCTATTCAAGCTCATCCACCACCCA-CTCAAACACA
1 CCACCTACTCAAGCACATCCACCACCAAGCT-AAACACA
7607073 TCCACC
1 -CCACC
7607079 GCCAACGCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
37 2 0.05
38 5 0.14
39 30 0.81
ACGTcount: A:0.33, C:0.48, G:0.05, T:0.14
Consensus pattern (38 bp):
CCACCTACTCAAGCACATCCACCACCAAGCTAAACACA
Found at i:7607099 original size:39 final size:39
Alignment explanation
Indices: 7607056--7607262 Score: 200
Period size: 39 Copynumber: 5.2 Consensus size: 39
7607046 AGCTCATCCA
*
7607056 CCACCCACTCAAACACATCCACCGCCAACGCAATACCCG
1 CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
* * * * * * *
7607095 CCACCCACACAAGCTCATCCGCCACCCACTCAA-ACCCATCCA
1 CCACCCACTCAAACACATCCACCACCAACGCAATA--C--CCG
*
7607137 CCACCCACTCAAACACATCCACCGCCAACGCAATACCCG
1 CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
* * * * * * *
7607176 CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCA
1 CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
* * *
7607215 CCACCCATTCAAACACATCCACCACCAATGCAATACACG
1 CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
7607254 CCACCCACT
1 CCACCCACT
7607263 AAAGGTTGTG
Statistics
Matches: 130, Mismatches: 33, Indels: 10
0.75 0.19 0.06
Matches are distributed among these distances:
38 1 0.01
39 98 0.75
40 1 0.01
41 1 0.01
42 28 0.22
43 1 0.01
ACGTcount: A:0.33, C:0.50, G:0.07, T:0.10
Consensus pattern (39 bp):
CCACCCACTCAAACACATCCACCACCAACGCAATACCCG
Found at i:7607099 original size:117 final size:115
Alignment explanation
Indices: 7606702--7607141 Score: 374
Period size: 117 Copynumber: 3.7 Consensus size: 115
7606692 AATGCAATAC
* * *
7606702 CCACCACCCACTCAAATACATCCACCGCCAACTCAAACTCCTCCACAAAGGCAATACCCGCCACC
1 CCACCACCCACTCAAACACATCCACCGCCAACGCAAACTCCTCCACCAAGGCAATACCCGCCACC
* * *
7606767 CACTCAAGCTCATTCACCACCAACACAATACTCGCCACCCACTCAAGCTCAT
66 CACTCAAGC-CATCCACCACCAACACTATACTCACCACCCA-TCAAGCTCAT
* * ** * ** * *
7606819 CCTCCACCAAGGCAATACCCA-CCACC-CATTCAA-GCTCA-TCCACCACCAAGGCAATACTCGC
1 CCACCACCCACTCAA-ACACATCCACCGC---CAACGCAAACTCCTCCACCAAGGCAATACCCGC
* * * *
7606880 CACCCACTCAGGGCCATCCACCACCTACACTA-ACTCACC-CTCCACCAAGGC-AAT
62 CACCCACTCA-AGCCATCCACCACCAACACTATACTCACCAC-CCATCAA-GCTCAT
* *
7606934 GCCCACCACCCACTCAAACACATCCACCACCAACTCAAACTCCTCCACCAAGGCAATACCCGCCA
1 --CCACCACCCACTCAAACACATCCACCGCCAACGCAAACTCCTCCACCAAGGCAATACCCGCCA
* ** * *
7606999 CCTACTCAAGCACATCCACCACCAAGGCTATACCCACCACCTATTCAAGCTCAT
64 CCCACTCAAGC-CATCCACCACCAACACTATACTCACCACCCA-TCAAGCTCAT
* * ** *
7607053 CCACCACCCACTCAAACACATCCACCGCCAACGCAATAC-CCGCCACCCACACAAGCTCATCCGC
1 CCACCACCCACTCAAACACATCCACCGCCAACGCAA-ACTCCTCCACCAAGGCAA--T-ACCCGC
*
7607117 CACCCACTCAAACCCATCCACCACC
62 CACCCACTC-AAGCCATCCACCACC
7607142 CACTCAAACA
Statistics
Matches: 253, Mismatches: 47, Indels: 43
0.74 0.14 0.13
Matches are distributed among these distances:
115 9 0.04
116 20 0.08
117 167 0.66
118 20 0.08
119 10 0.04
120 24 0.09
121 3 0.01
ACGTcount: A:0.32, C:0.49, G:0.07, T:0.12
Consensus pattern (115 bp):
CCACCACCCACTCAAACACATCCACCGCCAACGCAAACTCCTCCACCAAGGCAATACCCGCCACC
CACTCAAGCCATCCACCACCAACACTATACTCACCACCCATCAAGCTCAT
Found at i:7607135 original size:81 final size:80
Alignment explanation
Indices: 7607050--7607261 Score: 322
Period size: 81 Copynumber: 2.7 Consensus size: 80
7607040 TATTCAAGCT
7607050 CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCATCC
1 CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCATCC
* *
7607115 GCCACCCACTCAA-A
66 GCCACCAACGCAATA
7607129 CCCATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCAT
1 --CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCAT
*
7607194 CCGCCACCAAGGCAATA
64 CCGCCACCAACGCAATA
* * * *
7607211 C-T-CACCACCCATTCAAACACATCCACCACCAATGCAATACACGCCACCCAC
1 CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCAC
7607262 TAAAGGTTGT
Statistics
Matches: 123, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
78 45 0.37
79 1 0.01
80 1 0.01
81 75 0.61
82 1 0.01
ACGTcount: A:0.33, C:0.50, G:0.07, T:0.09
Consensus pattern (80 bp):
CATCCACCACCCACTCAAACACATCCACCGCCAACGCAATACCCGCCACCCACACAAGCTCATCC
GCCACCAACGCAATA
Found at i:7607197 original size:21 final size:21
Alignment explanation
Indices: 7607092--7607201 Score: 91
Period size: 21 Copynumber: 5.4 Consensus size: 21
7607082 AACGCAATAC
*
7607092 CCGCCACCCACACAAGCTCAT
1 CCGCCACCCACACAAACTCAT
* *
7607113 CCGCCACCCACTCAAACCCAT
1 CCGCCACCCACACAAACTCAT
* * *
7607134 CCACCACCCACTCAAACACAT
1 CCGCCACCCACACAAACTCAT
* * * * *
7607155 CCACCGCCAACGC-AA-T-AC
1 CCGCCACCCACACAAACTCAT
*
7607173 CCGCCACCCACACAAGCTCAT
1 CCGCCACCCACACAAACTCAT
7607194 CCGCCACC
1 CCGCCACC
7607202 AAGGCAATAC
Statistics
Matches: 70, Mismatches: 16, Indels: 6
0.76 0.17 0.07
Matches are distributed among these distances:
18 10 0.14
19 1 0.01
20 3 0.04
21 56 0.80
ACGTcount: A:0.30, C:0.55, G:0.07, T:0.08
Consensus pattern (21 bp):
CCGCCACCCACACAAACTCAT
Found at i:7607279 original size:99 final size:100
Alignment explanation
Indices: 7607176--7607366 Score: 267
Period size: 99 Copynumber: 1.9 Consensus size: 100
7607166 GCAATACCCG
* *
7607176 CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCACCCATTCAAACACATCCACCACC
1 CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCACCAACTCAAACACATCCACCACC
**
7607241 AATGCAATACACGCCACCCACT-AAAGGTTGTGAA
66 AACCCAATACACGCCACCCACTCAAAGGTTGTGAA
* * * * * *
7607275 CCACCTACTCAAGCTCATCCTCCACCGAGGCAATACTCACCTCCAACTCAAACTCATCCACCACC
1 CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCACCAACTCAAACACATCCACCACC
* *
7607340 AACCCAATACTCGCCGCCCACTCAAAG
66 AACCCAATACACGCCACCCACTCAAAG
7607367 TCATCCACCA
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
99 75 0.95
100 4 0.05
ACGTcount: A:0.33, C:0.44, G:0.09, T:0.14
Consensus pattern (100 bp):
CCACCCACACAAGCTCATCCGCCACCAAGGCAATACTCACCACCAACTCAAACACATCCACCACC
AACCCAATACACGCCACCCACTCAAAGGTTGTGAA
Found at i:7607404 original size:39 final size:39
Alignment explanation
Indices: 7607274--7607411 Score: 143
Period size: 39 Copynumber: 3.5 Consensus size: 39
7607264 AAGGTTGTGA
* * *
7607274 ACCACCTACTC-AAGCTCATCCTCCACCGAGGCAATACTC
1 ACCACCTACTCAAAG-TCATCCACCACCAACGCAATACTC
* * * *
7607313 ACCTCCAACTCAAACTCATCCACCACCAACCCAATACTC
1 ACCACCTACTCAAAGTCATCCACCACCAACGCAATACTC
* * * * *
7607352 GCCGCCCACTCAAAGTCATCCACCACCAATGCAGTACTC
1 ACCACCTACTCAAAGTCATCCACCACCAACGCAATACTC
*
7607391 ACCACCTACTCAAATTCATCC
1 ACCACCTACTCAAAGTCATCC
7607412 GCAGCCTCCT
Statistics
Matches: 80, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
39 78 0.98
40 2 0.03
ACGTcount: A:0.31, C:0.45, G:0.07, T:0.17
Consensus pattern (39 bp):
ACCACCTACTCAAAGTCATCCACCACCAACGCAATACTC
Found at i:7612493 original size:21 final size:21
Alignment explanation
Indices: 7612467--7612507 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7612457 ATCTGCTCAA
* *
7612467 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
7612488 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
7612508 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:7620551 original size:35 final size:33
Alignment explanation
Indices: 7620507--7620571 Score: 85
Period size: 33 Copynumber: 1.9 Consensus size: 33
7620497 ATATATCTAT
*
7620507 TTTAATTTTAATGTTATTTAAATATATATATTAAA
1 TTTAATTTTAAT-TTA-TTAAAAATATATATTAAA
* *
7620542 TTTATTTTTAATTTATTAAAAATATTTATT
1 TTTAATTTTAATTTATTAAAAATATATATT
7620572 TTAATATTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
33 13 0.48
34 3 0.11
35 11 0.41
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (33 bp):
TTTAATTTTAATTTATTAAAAATATATATTAAA
Found at i:7620574 original size:29 final size:31
Alignment explanation
Indices: 7620493--7620576 Score: 82
Period size: 35 Copynumber: 2.6 Consensus size: 31
7620483 TATTTACTTG
* *
7620493 TTAAATATATCTATTTTAATTTTAATGTTAT
1 TTAAAAATATTTATTTTAATTTTAATGTTAT
* *
7620524 TTAAATATATATATTAAATTTATTTTTAAT-TTA-
1 TTAAA-A-ATAT-TT-ATTTTAATTTTAATGTTAT
7620557 TTAAAAATATTTATTTTAAT
1 TTAAAAATATTTATTTTAAT
7620577 ATTTTTAATA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
29 6 0.14
30 2 0.05
31 9 0.21
32 1 0.02
33 9 0.21
34 4 0.09
35 12 0.28
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.57
Consensus pattern (31 bp):
TTAAAAATATTTATTTTAATTTTAATGTTAT
Found at i:7620591 original size:25 final size:23
Alignment explanation
Indices: 7620541--7620600 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 23
7620531 TATATATTAA
7620541 ATTTATTTTTAATTTATTAAAAAT
1 ATTTA-TTTTAATTTATTAAAAAT
* *
7620565 ATTTATTTTAATATTTTTAATATAT
1 ATTTATTTTAAT-TTATTAA-AAAT
*
7620590 ATATATTTTAA
1 ATTTATTTTAA
7620601 AATTATATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.23
24 11 0.35
25 13 0.42
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (23 bp):
ATTTATTTTAATTTATTAAAAAT
Found at i:7620595 original size:29 final size:29
Alignment explanation
Indices: 7620496--7620597 Score: 70
Period size: 29 Copynumber: 3.5 Consensus size: 29
7620486 TTACTTGTTA
* *
7620496 AATATATCTAT-TTTAATTTTAATGTTATTT
1 AATATATATATATTT-ATTTTAATATT-TTT
**
7620526 AA-ATATATATA-TTAAATT--TATTTTT
1 AATATATATATATTTATTTTAATATTTTT
* *
7620551 AATTTATTAAAAATATTTATTTTAATATTTTT
1 AA--TA-TATATATATTTATTTTAATATTTTT
7620583 AATATATATATATTT
1 AATATATATATATTT
7620598 TAAAATTATA
Statistics
Matches: 54, Mismatches: 10, Indels: 17
0.67 0.12 0.21
Matches are distributed among these distances:
25 5 0.09
26 3 0.06
28 4 0.07
29 24 0.44
30 9 0.17
32 9 0.17
ACGTcount: A:0.40, C:0.01, G:0.01, T:0.58
Consensus pattern (29 bp):
AATATATATATATTTATTTTAATATTTTT
Found at i:7626420 original size:5 final size:5
Alignment explanation
Indices: 7626404--7626445 Score: 75
Period size: 5 Copynumber: 8.4 Consensus size: 5
7626394 TGAGCATTCG
*
7626404 ATCGA ATTGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA AT
7626446 ATATTTGTTC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (5 bp):
ATCGA
Found at i:7627294 original size:30 final size:31
Alignment explanation
Indices: 7627252--7627312 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 31
7627242 GGGTTGGGAG
*
7627252 GGGAAGGGAGTAAAAGTTTTGGGGGAAAAGT
1 GGGAAGGGAGTAAAAGTTTTGAGGGAAAAGT
7627283 GGGAA-GGAGTAAAAGTTTTGAGGGAAAAGT
1 GGGAAGGGAGTAAAAGTTTTGAGGGAAAAGT
7627313 AAAAATATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.38, C:0.00, G:0.43, T:0.20
Consensus pattern (31 bp):
GGGAAGGGAGTAAAAGTTTTGAGGGAAAAGT
Found at i:7628267 original size:13 final size:13
Alignment explanation
Indices: 7628246--7628311 Score: 78
Period size: 13 Copynumber: 5.1 Consensus size: 13
7628236 TTTAAACCAA
* *
7628246 ACTTCTCAAAAGT
1 ACTTTTCAAAAGC
*
7628259 ACTTTTCAAATGC
1 ACTTTTCAAAAGC
* *
7628272 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
*
7628285 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
7628298 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
7628311 A
1 A
7628312 TTGCCAAACT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:7628546 original size:23 final size:23
Alignment explanation
Indices: 7628516--7628562 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
7628506 GTTGATACAC
7628516 AATATCAACAGAAGTGGAGAAGT
1 AATATCAACAGAAGTGGAGAAGT
7628539 AATATCAACAGAAGTGGAGAAGT
1 AATATCAACAGAAGTGGAGAAGT
7628562 A
1 A
7628563 GGGGGGATGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.49, C:0.09, G:0.26, T:0.17
Consensus pattern (23 bp):
AATATCAACAGAAGTGGAGAAGT
Found at i:7640084 original size:125 final size:125
Alignment explanation
Indices: 7639781--7640345 Score: 878
Period size: 125 Copynumber: 4.5 Consensus size: 125
7639771 AAAATCAAAA
* * * *
7639781 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCATGGATGCACTTTTGCTACAATAGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* *
7639846 TCTTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTTAAG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAACGCTTCAAG
*
7639907 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGATGCGCTTTTGCTACAGTAGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* * * *
7639972 TCATGGAAAAAATAATTTCGAGTTGACATTTCTAAGCAAATAGTATAAAAATGCTTCAAG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAG
* * * *
7640032 CAGGATGCTTTATGAGAAGAATTTGTGAAATCACGCCCTCATGGACGTGCTTTTGCTACAGTTGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* *
7640097 TCCTGGAAAAAATAATTTTGAGTTGACGTTTCTGAGAAAATAGTATAAAAACGCTTCAAG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAG
* * *
7640157 TAGGATGTTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACTCGCTTTTGCTACAGTAGG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
* *
7640222 TCCTGGAAAAAATAATTTCGAGTTGACGTTTTTGAGCAAATAATATAAAAACGCTTCAAG
66 TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAG
** * * *
7640282 CAGGATGCTTTATGACCAGAACTTGTGAAATCGCGCCCACGCGGACGCGCTTTTGCTACAGTAG
1 CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAG
7640346 CATGTTTGGG
Statistics
Matches: 401, Mismatches: 38, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
125 296 0.74
126 105 0.26
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (125 bp):
CAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCTCGTGGACGCGCTTTTGCTACAGTAGG
TCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAACGCTTCAAG
Found at i:7643634 original size:43 final size:43
Alignment explanation
Indices: 7643428--7643640 Score: 174
Period size: 43 Copynumber: 5.0 Consensus size: 43
7643418 CAGTCAAGGG
* *
7643428 TTAAGGTT-AGGGTTAGGGTTTTTAAGTTAAGTGTTTAGGGTTT
1 TTAA-GTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTT
* * *
7643471 TTAAGATAAAGGTTAGGGTTTTTAAGTTAAGGG-TT-AGG-AT
1 TTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTT
* * * * *
7643511 TTAGGGTTTAGGGCTAGGAG-TTTTGAGTTAAGGGGTTT----TTAAA
1 TTA-AGTTAAGGGTTAGG-GTTTTTAAGTTAA-GGGTTTAAGGTT--T
* **
7643554 TTAAGTCAAGGGTTTAGGGTTTTTAAGTTAAAAGTTTAAGGTTT
1 TTAAGTTAAGGG-TTAGGGTTTTTAAGTTAAGGGTTTAAGGTTT
*
7643598 TTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAGGGTTT
1 TTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTT
7643641 GTCAATTAAA
Statistics
Matches: 131, Mismatches: 25, Indels: 28
0.71 0.14 0.15
Matches are distributed among these distances:
40 4 0.03
41 21 0.16
42 19 0.15
43 74 0.56
44 11 0.08
46 2 0.02
ACGTcount: A:0.26, C:0.01, G:0.31, T:0.42
Consensus pattern (43 bp):
TTAAGTTAAGGGTTAGGGTTTTTAAGTTAAGGGTTTAAGGTTT
Found at i:7643649 original size:22 final size:22
Alignment explanation
Indices: 7643428--7643640 Score: 164
Period size: 22 Copynumber: 10.0 Consensus size: 22
7643418 CAGTCAAGGG
7643428 TTAAGGTT-AGGG-TTAGGGTTT
1 TTAA-GTTAAGGGTTTAGGGTTT
*
7643449 TTAAGTTAAGTGTTTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
* *
7643471 TTAAGATAAAGG-TTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
*
7643492 TTAAGTTAAGGG-TTA-GG-AT
1 TTAAGTTAAGGGTTTAGGGTTT
* * *
7643511 TTAGGGTTTAGGG-CTAGGAG-TT
1 TTA-AGTTAAGGGTTTAGG-GTTT
* *
7643533 TTGAGTTAAGGGGTTT----TTAAA
1 TTAAGTTAA-GGGTTTAGGGTT--T
*
7643554 TTAAGTCAAGGGTTTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
** *
7643576 TTAAGTTAAAAGTTTAAGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
7643598 TTAAGTTAAGGG-TTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
7643619 TTAAGTTAAGGGTTTAGGGTTT
1 TTAAGTTAAGGGTTTAGGGTTT
7643641 GTCAATTAAA
Statistics
Matches: 151, Mismatches: 26, Indels: 29
0.73 0.13 0.14
Matches are distributed among these distances:
19 5 0.03
20 20 0.13
21 61 0.40
22 62 0.41
23 1 0.01
24 2 0.01
ACGTcount: A:0.26, C:0.01, G:0.31, T:0.42
Consensus pattern (22 bp):
TTAAGTTAAGGGTTTAGGGTTT
Found at i:7644207 original size:18 final size:18
Alignment explanation
Indices: 7644181--7644223 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7644171 GACTCAGAAA
* *
7644181 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
7644199 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
7644217 AGGAAAC
1 AGGAAAC
7644224 GCACCTGACA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:7644847 original size:14 final size:14
Alignment explanation
Indices: 7644830--7644861 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7644820 TTATATACAT
7644830 AATAGTAAATACTA
1 AATAGTAAATACTA
*
7644844 AATATTAAATACTA
1 AATAGTAAATACTA
7644858 AATA
1 AATA
7644862 CCAATCGACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.31
Consensus pattern (14 bp):
AATAGTAAATACTA
Found at i:7645068 original size:20 final size:20
Alignment explanation
Indices: 7645031--7645068 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7645021 ATTATTTTTA
*
7645031 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
7645051 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
7645069 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:7646832 original size:65 final size:66
Alignment explanation
Indices: 7646745--7646872 Score: 195
Period size: 65 Copynumber: 2.0 Consensus size: 66
7646735 CTAAAAACGG
* * *
7646745 TTTTTACATGAAAAAAAGTAATTACTAAAATAAAATAAAAACAAATTATTTCCAATAATGTATCG
1 TTTTTACATGAAAAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTATCG
7646810 T
66 T
* * *
7646811 TTTTTACATG-AAAAAATTAATTACGAAAATAAAATAAAAATAAATTGTTTACAAGAATGTAT
1 TTTTTACATGAAAAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTAT
7646873 TATTTAAAAG
Statistics
Matches: 56, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
65 46 0.82
66 10 0.18
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (66 bp):
TTTTTACATGAAAAAAAGTAATTACGAAAATAAAATAAAAACAAATTATTTACAAGAATGTATCG
T
Found at i:7647014 original size:8 final size:8
Alignment explanation
Indices: 7646999--7647073 Score: 53
Period size: 8 Copynumber: 10.4 Consensus size: 8
7646989 TTATTATTTA
7646999 TATA-TTT
1 TATAGTTT
7647006 TATAGTTT
1 TATAGTTT
7647014 TAT-GATTT
1 TATAG-TTT
7647022 TATA-TTT
1 TATAGTTT
7647029 TATTAG---
1 TA-TAGTTT
7647035 T-TAGTTT
1 TATAGTTT
7647042 TATA--TT
1 TATAGTTT
7647048 TATA-TTT
1 TATAGTTT
7647055 TATAGTTT
1 TATAGTTT
*
7647063 TATAATTT
1 TATAGTTT
7647071 TAT
1 TAT
7647074 TTTATTTAAT
Statistics
Matches: 56, Mismatches: 1, Indels: 21
0.72 0.01 0.27
Matches are distributed among these distances:
4 3 0.05
6 7 0.12
7 17 0.30
8 29 0.52
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.65
Consensus pattern (8 bp):
TATAGTTT
Found at i:7647060 original size:21 final size:22
Alignment explanation
Indices: 7646999--7647078 Score: 90
Period size: 26 Copynumber: 3.5 Consensus size: 22
7646989 TTATTATTTA
*
7646999 TATATTTTATAGTTTTATGATTT
1 TATATTTTATAGTTTTAT-AATT
*
7647022 TATATTTTATTAGTTAGTTTTATATT
1 TATATTTTA-TAGTT--TTATA-ATT
7647048 TATATTTTATAGTTTTATAATT
1 TATATTTTATAGTTTTATAATT
7647070 T-TATTTTAT
1 TATATTTTAT
7647079 TTAATAAAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 8 0.16
22 4 0.08
23 13 0.26
24 5 0.10
25 6 0.12
26 14 0.28
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (22 bp):
TATATTTTATAGTTTTATAATT
Found at i:7647485 original size:30 final size:31
Alignment explanation
Indices: 7647440--7647501 Score: 99
Period size: 30 Copynumber: 2.0 Consensus size: 31
7647430 AAATATACAT
7647440 ATTATCAAAACATTAAAAAATTATAATTATA
1 ATTATCAAAACATTAAAAAATTATAATTATA
* *
7647471 ATTAT-AAAAGATTAAAAAATTGTAATTATA
1 ATTATCAAAACATTAAAAAATTATAATTATA
7647501 A
1 A
7647502 AAATAAAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
30 24 0.83
31 5 0.17
ACGTcount: A:0.58, C:0.03, G:0.03, T:0.35
Consensus pattern (31 bp):
ATTATCAAAACATTAAAAAATTATAATTATA
Found at i:7647508 original size:30 final size:30
Alignment explanation
Indices: 7647446--7647511 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
7647436 ACATATTATC
**
7647446 AAAACATTAAAAAATTATAATTATAATTAT
1 AAAACATTAAAAAATTATAATTATAAAAAT
* *
7647476 AAAAGATTAAAAAATTGTAATTATAAAAAT
1 AAAACATTAAAAAATTATAATTATAAAAAT
7647506 AAAACA
1 AAAACA
7647512 ACTCAACCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.30
Consensus pattern (30 bp):
AAAACATTAAAAAATTATAATTATAAAAAT
Found at i:7647564 original size:6 final size:6
Alignment explanation
Indices: 7647553--7647588 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
7647543 TTATGAAAAC
7647553 TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA
1 TATAAA TATAAA TATAAA TATAAA TATAAA TATAAA
7647589 ACTAACTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
TATAAA
Found at i:7647608 original size:32 final size:32
Alignment explanation
Indices: 7647566--7647626 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
7647556 AAATATAAAT
* *
7647566 ATAAATATAAATATA-AATATAAAACTAACTA
1 ATAAATATAAAAATATAATAAAAAACTAACTA
*
7647597 ATAAAGTATAAAAATATATTAAAAAACTAA
1 ATAAA-TATAAAAATATAATAAAAAACTAA
7647627 AAAAATATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
31 5 0.20
32 9 0.36
33 11 0.44
ACGTcount: A:0.66, C:0.05, G:0.02, T:0.28
Consensus pattern (32 bp):
ATAAATATAAAAATATAATAAAAAACTAACTA
Found at i:7648110 original size:21 final size:21
Alignment explanation
Indices: 7648084--7648138 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
7648074 AACAGCGGTG
*
7648084 GCGGTGAGATTAGTTACTGTA
1 GCGGTGAGATTAGGTACTGTA
*
7648105 GCGGTGAGATTGGGTACTGTA
1 GCGGTGAGATTAGGTACTGTA
7648126 GCGGTGAGATTAG
1 GCGGTGAGATTAG
7648139 AAACAATGGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.22, C:0.09, G:0.40, T:0.29
Consensus pattern (21 bp):
GCGGTGAGATTAGGTACTGTA
Found at i:7648452 original size:22 final size:22
Alignment explanation
Indices: 7648401--7648452 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
7648391 TTTTATAGTT
*
7648401 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
7648424 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
7648446 ATAATAA
1 ATAATAA
7648453 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:7651803 original size:64 final size:64
Alignment explanation
Indices: 7651702--7651848 Score: 276
Period size: 64 Copynumber: 2.3 Consensus size: 64
7651692 ATGTTATATT
*
7651702 AGTTCGAATCCTCTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
1 AGTTCGAATCCTATAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
*
7651766 AGTTCGAATCCTTTAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
1 AGTTCGAATCCTATAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
7651830 AGTTCGAATCCTATAATTT
1 AGTTCGAATCCTATAATTT
7651849 AAATACTATA
Statistics
Matches: 81, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
64 81 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (64 bp):
AGTTCGAATCCTATAATTTTGATTGAATTAATAAGGTTAGAAATTTGAGAATTTTAAAATCTTA
Found at i:7653196 original size:379 final size:379
Alignment explanation
Indices: 7652497--7653241 Score: 1436
Period size: 379 Copynumber: 2.0 Consensus size: 379
7652487 AATAAAATGA
*
7652497 TTAGAAATAGGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
1 TTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
7652562 GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAAC
66 GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAAC
*
7652627 GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGTTTTAATTTGTGCTTTCTTTGCTTC
131 GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
*
7652692 TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTTGCTTTT
196 TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
7652757 TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
261 TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
*
7652822 CAATTGTGTGTTCATCTCTTGTTTTCATTATAATTTATTGCATTTGTAAGTTTC
326 CAATTGTGTGTTCATCTCTTGTTCTCATTATAATTTATTGCATTTGTAAGTTTC
*
7652876 TTAGAAATAAGATGATTGGGGAAATTTGGGTTAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
1 TTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
*
7652941 GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTGAAATGAAC
66 GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAAC
7653006 GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
131 GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
7653071 TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
196 TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
7653136 TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
261 TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
7653201 CAATTGTGTGTTCATCTCTTGTTCTCATTATAATTTATTGC
326 CAATTGTGTGTTCATCTCTTGTTCTCATTATAATTTATTGC
7653242 TATTGAATGC
Statistics
Matches: 360, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
379 360 1.00
ACGTcount: A:0.24, C:0.16, G:0.18, T:0.42
Consensus pattern (379 bp):
TTAGAAATAAGATGATTGGGGAAATTTGGGTCAAAATTGAGGAAAAAGCAGTGAAGATAATCCTG
GGAAGTGAATGGGAAACTTCCCAATCCAGGTGTTGAATGCAACAGTTTTTTCCTTTAAAATGAAC
GACCGAAAGAGTGAGCTCTTTTTTTTCCTTCTTGTTGTTGATTTAATTTGTGCTTTCTTTGCTTC
TTTTCATTTGGTTAACGAATCTCTGAATCTTTTCATTTGATTTAATTTGTGCTTTCTTCGCTTTT
TTTCATTTGGTTTGATTTATCCTCTCCCTCTCTCTTTGTCTCACACATATGCACATCAACAGACG
CAATTGTGTGTTCATCTCTTGTTCTCATTATAATTTATTGCATTTGTAAGTTTC
Found at i:7655563 original size:21 final size:21
Alignment explanation
Indices: 7655537--7655580 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
7655527 AAATAGAGCT
7655537 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
7655558 TCTTTGAGTCTGCTGTGAGTG
1 TCTTTGAGTCTGCTGTGAGTG
7655579 TC
1 TC
7655581 AATTGAAGAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.09, C:0.16, G:0.32, T:0.43
Consensus pattern (21 bp):
TCTTTGAGTCTGCTGTGAGTG
Found at i:7672943 original size:12 final size:12
Alignment explanation
Indices: 7672926--7672950 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7672916 GCAGTAGCCC
7672926 CAGTACCAGCAG
1 CAGTACCAGCAG
7672938 CAGTACCAGCAG
1 CAGTACCAGCAG
7672950 C
1 C
7672951 GATAGTGGCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.36, G:0.24, T:0.08
Consensus pattern (12 bp):
CAGTACCAGCAG
Found at i:7680340 original size:12 final size:13
Alignment explanation
Indices: 7680323--7680359 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
7680313 GAACCGGACA
7680323 CGAACCGAA-CTC
1 CGAACCGAAGCTC
7680335 CGAACC-AAGCTC
1 CGAACCGAAGCTC
*
7680347 CGAACCGTAGCTC
1 CGAACCGAAGCTC
7680360 TGATGCCACT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
11 2 0.09
12 15 0.68
13 5 0.23
ACGTcount: A:0.30, C:0.41, G:0.19, T:0.11
Consensus pattern (13 bp):
CGAACCGAAGCTC
Found at i:7692587 original size:25 final size:25
Alignment explanation
Indices: 7692553--7692604 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
7692543 AGAAAAAGCT
*
7692553 AAGAAGCATAGTAACATGCCCTTGA
1 AAGAAACATAGTAACATGCCCTTGA
*
7692578 AAGAAACATAGTTACATGCCCTTGA
1 AAGAAACATAGTAACATGCCCTTGA
7692603 AA
1 AA
7692605 TTGCAAGGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.42, C:0.19, G:0.17, T:0.21
Consensus pattern (25 bp):
AAGAAACATAGTAACATGCCCTTGA
Found at i:7700635 original size:25 final size:27
Alignment explanation
Indices: 7700584--7700648 Score: 64
Period size: 30 Copynumber: 2.4 Consensus size: 27
7700574 CACACTAAAC
7700584 TTTATTAAATTAAGATGTGAACTAATTTAA
1 TTTATTAAATTAAGA-GTGAAC-AA-TTAA
7700614 TTTATTAAATTAAGA-T-AA-AATTAA
1 TTTATTAAATTAAGAGTGAACAATTAA
* *
7700638 ATAATTAAATT
1 TTTATTAAATT
7700649 TATTATTATA
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
24 13 0.39
25 2 0.06
27 2 0.06
28 1 0.03
30 15 0.45
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (27 bp):
TTTATTAAATTAAGAGTGAACAATTAA
Found at i:7700881 original size:20 final size:20
Alignment explanation
Indices: 7700838--7700881 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
7700828 AAATCCCTTC
* * * *
7700838 AAAGTAAATTCCTTGGATTG
1 AAAGGAAATTCCTTGAAATA
7700858 AAAGGAAATTCCTTGAAATA
1 AAAGGAAATTCCTTGAAATA
7700878 AAAG
1 AAAG
7700882 ATTAAGAATA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.09, G:0.18, T:0.27
Consensus pattern (20 bp):
AAAGGAAATTCCTTGAAATA
Found at i:7700930 original size:3 final size:3
Alignment explanation
Indices: 7700917--7700953 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
7700907 AGTTTAGTTT
*
7700917 ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
7700954 AAGACATCAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:7708856 original size:13 final size:13
Alignment explanation
Indices: 7708838--7708866 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
7708828 CTGTTAGTCA
7708838 AATAAGTTTGTTT
1 AATAAGTTTGTTT
7708851 AATAAGTTTGTTT
1 AATAAGTTTGTTT
7708864 AAT
1 AAT
7708867 CTTGATGGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (13 bp):
AATAAGTTTGTTT
Found at i:7709175 original size:29 final size:29
Alignment explanation
Indices: 7709124--7709197 Score: 80
Period size: 29 Copynumber: 2.6 Consensus size: 29
7709114 GAAATTTAAA
* * * *
7709124 TATTAAAAAAATGAAAATTTATATAAACC
1 TATTAAAAATATGAAAAATTATAAAAAAC
*
7709153 TA-TAAAAATATGAAAAGATTATAAAAAAG
1 TATTAAAAATATGAAAA-ATTATAAAAAAC
7709182 TATTAAAAATAT-AAAA
1 TATTAAAAATATGAAAA
7709198 TTCTAATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
28 13 0.34
29 16 0.42
30 9 0.24
ACGTcount: A:0.64, C:0.03, G:0.05, T:0.28
Consensus pattern (29 bp):
TATTAAAAATATGAAAAATTATAAAAAAC
Found at i:7709285 original size:31 final size:30
Alignment explanation
Indices: 7709228--7709287 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 30
7709218 ATTTATATAA
*
7709228 TTTATAAAACATATTCAGAATATTTAAAAT
1 TTTATAAAACATATTCAAAATATTTAAAAT
*
7709258 TTTATAAAAGCATATT-AAAATTCTTTAAAA
1 TTTATAAAA-CATATTCAAAA-TATTTAAAA
7709288 ATCATAAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.50, C:0.07, G:0.03, T:0.40
Consensus pattern (30 bp):
TTTATAAAACATATTCAAAATATTTAAAAT
Found at i:7723226 original size:20 final size:20
Alignment explanation
Indices: 7723198--7723238 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
7723188 ATTAGGTGAT
* *
7723198 TAAATGACTTAATTAATAAA
1 TAAAGGACTTAAGTAATAAA
7723218 TAAAGGACTTAAGTAATAAA
1 TAAAGGACTTAAGTAATAAA
7723238 T
1 T
7723239 GTACCTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.10, T:0.32
Consensus pattern (20 bp):
TAAAGGACTTAAGTAATAAA
Found at i:7724103 original size:17 final size:17
Alignment explanation
Indices: 7724068--7724104 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
7724058 ATATATGTTC
*
7724068 TATTGTTGGAATTAAAT
1 TATTGTTGGAAATAAAT
*
7724085 TATTGTTGGAAATATAT
1 TATTGTTGGAAATAAAT
7724102 TAT
1 TAT
7724105 CGAATTTAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (17 bp):
TATTGTTGGAAATAAAT
Found at i:7724269 original size:21 final size:21
Alignment explanation
Indices: 7724248--7724310 Score: 89
Period size: 19 Copynumber: 3.2 Consensus size: 21
7724238 TTTTACTTTT
*
7724248 TGTTCAGCTCTTACGAGCTTT
1 TGTTCAGCTCTTACGAGCTTC
7724269 TGTTCAG--CTTACGAGCTTC
1 TGTTCAGCTCTTACGAGCTTC
7724288 TGTTCAGCT-TT-CGAGCTTC
1 TGTTCAGCTCTTACGAGCTTC
7724307 TGTT
1 TGTT
7724311 GGTGTATTCG
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
19 30 0.77
20 2 0.05
21 7 0.18
ACGTcount: A:0.13, C:0.24, G:0.21, T:0.43
Consensus pattern (21 bp):
TGTTCAGCTCTTACGAGCTTC
Found at i:7724281 original size:19 final size:19
Alignment explanation
Indices: 7724257--7724310 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
7724247 TTGTTCAGCT
*
7724257 CTTACGAGCTTTTGTTCAG
1 CTTACGAGCTTCTGTTCAG
7724276 CTTACGAGCTTCTGTTCAG
1 CTTACGAGCTTCTGTTCAG
*
7724295 CTTTCGAGCTTCTGTT
1 CTTACGAGCTTCTGTT
7724311 GGTGTATTCG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.13, C:0.24, G:0.20, T:0.43
Consensus pattern (19 bp):
CTTACGAGCTTCTGTTCAG
Found at i:7724550 original size:18 final size:17
Alignment explanation
Indices: 7724529--7724572 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
7724519 ATGATGGTAC
*
7724529 ATGATATATTGATATGTA
1 ATGATATATTGAAATG-A
*
7724547 ATGATATATTGAAATGG
1 ATGATATATTGAAATGA
7724564 ATGATATAT
1 ATGATATAT
7724573 GTATATGAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (17 bp):
ATGATATATTGAAATGA
Found at i:7725434 original size:30 final size:30
Alignment explanation
Indices: 7725400--7725476 Score: 136
Period size: 30 Copynumber: 2.6 Consensus size: 30
7725390 ACGGGCAAAG
*
7725400 ACACGGGCGTGTGTCTCAATCGTGTGTGAC
1 ACACGGTCGTGTGTCTCAATCGTGTGTGAC
*
7725430 ACACGGTCGTGTATCTCAATCGTGTGTGAC
1 ACACGGTCGTGTGTCTCAATCGTGTGTGAC
7725460 ACACGGTCGTGTGTCTC
1 ACACGGTCGTGTGTCTC
7725477 TTATATCTTT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.17, C:0.25, G:0.30, T:0.29
Consensus pattern (30 bp):
ACACGGTCGTGTGTCTCAATCGTGTGTGAC
Found at i:7725441 original size:17 final size:17
Alignment explanation
Indices: 7725419--7725473 Score: 55
Period size: 17 Copynumber: 3.5 Consensus size: 17
7725409 TGTGTCTCAA
7725419 TCGTGTGTGACACACGG
1 TCGTGTGTGACACACGG
* * *
7725436 TCGTGTAT--CTCA--A
1 TCGTGTGTGACACACGG
7725449 TCGTGTGTGACACACGG
1 TCGTGTGTGACACACGG
7725466 TCGTGTGT
1 TCGTGTGT
7725474 CTCTTATATC
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
13 7 0.25
15 6 0.21
17 15 0.54
ACGTcount: A:0.16, C:0.22, G:0.31, T:0.31
Consensus pattern (17 bp):
TCGTGTGTGACACACGG
Found at i:7732402 original size:105 final size:101
Alignment explanation
Indices: 7732238--7732435 Score: 247
Period size: 105 Copynumber: 1.9 Consensus size: 101
7732228 ATTTGACGGA
*** * *
7732238 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGCTAGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATAAATAAATGTAAGACCATAGCCAGGCTATGGCATTCTAA
7732303 TGAAAAGACCATAACT-GGGTTATGACACCTTGAACG
66 TGAAAAGACCATAACTAGGG-TATGACACCTTGAACG
*
7732339 TAAGACCATGGTTGGACCATGGCAGTATAAATACATCTGTAAGACCATAGCCCA-GCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--ATAAATA-A-ATGTAAGACCATAG-CCAGGCTATGGCAT
* * *
7732403 TCTGATGATAATACCATAACTAGGGTATGACAC
61 TCTAATGAAAAGACCATAACTAGGGTATGACAC
7732436 TACAAATGTA
Statistics
Matches: 82, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
101 24 0.29
103 4 0.05
104 1 0.01
105 48 0.59
106 5 0.06
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.26
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATAAATAAATGTAAGACCATAGCCAGGCTATGGCATTCTAA
TGAAAAGACCATAACTAGGGTATGACACCTTGAACG
Found at i:7732447 original size:105 final size:101
Alignment explanation
Indices: 7732238--7732463 Score: 242
Period size: 105 Copynumber: 2.2 Consensus size: 101
7732228 ATTTGACGGA
*** * *
7732238 TAAGACCATGGTTGGACCATGGCAATGTTTAAATGTAAGACCATAGCTAGGCTATGGCATTTTAA
1 TAAGACCATGGTTGGACCATGGCAATAAATAAATGTAAGACCATAGCCAGGCTATGGCATTCTAA
**
7732303 TGAAAAGACCATAACTGGGTTATGACACCTTGAACG
66 TGAAAAGACCATAACTGGGTTATGACACCTCAAACG
*
7732339 TAAGACCATGGTTGGACCATGGCAGTATAAATACATCTGTAAGACCATAGCCCA-GCTATGGCAT
1 TAAGACCATGGTTGGACCATGGCA--ATAAATA-A-ATGTAAGACCATAG-CCAGGCTATGGCAT
* * * *
7732403 TCTGATGATAATACCATAACTAGGG-TATGACA-CTACAAATG
61 TCTAATGAAAAGACCATAACT-GGGTTATGACACCT-CAAACG
**
7732444 TAAGACCATGGCAGGACCAT
1 TAAGACCATGGTTGGACCAT
7732464 ACCAATACAT
Statistics
Matches: 104, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
101 24 0.23
103 4 0.04
104 3 0.03
105 68 0.65
106 5 0.05
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.25
Consensus pattern (101 bp):
TAAGACCATGGTTGGACCATGGCAATAAATAAATGTAAGACCATAGCCAGGCTATGGCATTCTAA
TGAAAAGACCATAACTGGGTTATGACACCTCAAACG
Found at i:7734076 original size:12 final size:12
Alignment explanation
Indices: 7734034--7734077 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
7734024 GTTTTAGAAA
* *
7734034 TAATATTAATTT
1 TAATATTTATAT
* *
7734046 TAATATATATAA
1 TAATATTTATAT
7734058 TAATATTTATAT
1 TAATATTTATAT
7734070 TAATATTT
1 TAATATTT
7734078 TTCTAACACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TAATATTTATAT
Found at i:7735954 original size:21 final size:21
Alignment explanation
Indices: 7735924--7735973 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 21
7735914 CTGAACAGAA
7735924 GAACAAAAGCTCGAAAGAGCT
1 GAACAAAAGCTCGAAAGAGCT
* * *
7735945 GAACAGAAGCTCGTAAGAGTT
1 GAACAAAAGCTCGAAAGAGCT
7735966 GAACAAAA
1 GAACAAAA
7735974 ACTCATAAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.48, C:0.16, G:0.24, T:0.12
Consensus pattern (21 bp):
GAACAAAAGCTCGAAAGAGCT
Found at i:7742578 original size:21 final size:21
Alignment explanation
Indices: 7742554--7742622 Score: 70
Period size: 21 Copynumber: 3.3 Consensus size: 21
7742544 ACATACAAGA
7742554 AATTATGAAAGAGAGAAGCAG
1 AATTATGAAAGAGAGAAGCAG
* * **
7742575 AATTATCAGCAG-GTCAAG-AG
1 AATTATGA-AAGAGAGAAGCAG
7742595 AAATTATGAAAGAGAGAAGCAG
1 -AATTATGAAAGAGAGAAGCAG
7742617 AATTAT
1 AATTAT
7742623 CAGCAGGTCA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
20 4 0.11
21 28 0.78
22 4 0.11
ACGTcount: A:0.49, C:0.07, G:0.25, T:0.19
Consensus pattern (21 bp):
AATTATGAAAGAGAGAAGCAG
Found at i:7742598 original size:42 final size:42
Alignment explanation
Indices: 7742551--7742637 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
7742541 ATAACATACA
7742551 AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
1 AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
7742593 AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
1 AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
7742635 AGA
1 AGA
7742638 TTAGCCCAAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.48, C:0.09, G:0.26, T:0.16
Consensus pattern (42 bp):
AGAAATTATGAAAGAGAGAAGCAGAATTATCAGCAGGTCAAG
Found at i:7749480 original size:4 final size:4
Alignment explanation
Indices: 7749473--7749500 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
7749463 TTACTTTTTT
7749473 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
1 TTTC TTTC TTTC TTTC TTTC TTTC TTTC
7749501 ATAGAGCTAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (4 bp):
TTTC
Found at i:7756782 original size:3 final size:3
Alignment explanation
Indices: 7756774--7756812 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
7756764 CTCTCGCTCC
*
7756774 TAA TAA TAA TAG TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
7756813 AGAAAAGAGT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:7761806 original size:86 final size:86
Alignment explanation
Indices: 7761657--7761829 Score: 294
Period size: 86 Copynumber: 2.0 Consensus size: 86
7761647 GGATTGTTCA
* * * *
7761657 ACTGTACCAAGTTTAGTGAGTTCACTAGTTATGTAGATGTCATATTGTGATATGCGGTGTGCTCA
1 ACTGTACCAAGTTTAGTGAGTTCACTAATTATGTAGATGCCATATTGTGATATGAGGTATGCTCA
7761722 TGGTATGAC-CCTGCATATAGC
66 TGGTATGACGCC-GCATATAGC
7761743 ACTGTACCAAGTTTAGTGAGTTCACTAATTATGTAGATGCCATATTGTGATATGAGGTATGCTCA
1 ACTGTACCAAGTTTAGTGAGTTCACTAATTATGTAGATGCCATATTGTGATATGAGGTATGCTCA
7761808 TGGTATGACGCCGCATATAGC
66 TGGTATGACGCCGCATATAGC
7761829 A
1 A
7761830 GGAACCTAGT
Statistics
Matches: 82, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
86 80 0.98
87 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (86 bp):
ACTGTACCAAGTTTAGTGAGTTCACTAATTATGTAGATGCCATATTGTGATATGAGGTATGCTCA
TGGTATGACGCCGCATATAGC
Done.