Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 182 of 199
Found at i:58275828 original size:67 final size:67
Alignment explanation
Indices: 58275757--58275901 Score: 281
Period size: 67 Copynumber: 2.2 Consensus size: 67
58275747 ATAGAGTGTG
*
58275757 ATGTGAAATTTGGTCAAATGGTTTAAACCAATCTGACCCAAGATTAGATTAAGAATTCTTAAGAA
1 ATGTGAAATTAGGTCAAATGGTTTAAACCAATCTGACCCAAGATTAGATTAAGAATTCTTAAGAA
58275822 AA
66 AA
58275824 ATGTGAAATTAGGTCAAATGGTTTAAACCAATCTGACCCAAGATTAGATTAAGAATTCTTAAGAA
1 ATGTGAAATTAGGTCAAATGGTTTAAACCAATCTGACCCAAGATTAGATTAAGAATTCTTAAGAA
58275889 AA
66 AA
58275891 ATGTGAAATTA
1 ATGTGAAATTA
58275902 AACTGAGTGC
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
67 77 1.00
ACGTcount: A:0.43, C:0.11, G:0.17, T:0.30
Consensus pattern (67 bp):
ATGTGAAATTAGGTCAAATGGTTTAAACCAATCTGACCCAAGATTAGATTAAGAATTCTTAAGAA
AA
Found at i:58277901 original size:15 final size:15
Alignment explanation
Indices: 58277881--58277911 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
58277871 GTTTTATTGC
58277881 TATTATTATTAATGT
1 TATTATTATTAATGT
*
58277896 TATTATTATTATTGT
1 TATTATTATTAATGT
58277911 T
1 T
58277912 TCTATATTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (15 bp):
TATTATTATTAATGT
Found at i:58279702 original size:14 final size:14
Alignment explanation
Indices: 58279683--58279713 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
58279673 GAAAAGAGCA
*
58279683 CACAATTGTCAACG
1 CACAATTATCAACG
58279697 CACAATTATCAACG
1 CACAATTATCAACG
58279711 CAC
1 CAC
58279714 CTGTTTTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.32, G:0.10, T:0.19
Consensus pattern (14 bp):
CACAATTATCAACG
Found at i:58281888 original size:17 final size:17
Alignment explanation
Indices: 58281866--58281899 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
58281856 TAGTTTTTTA
58281866 TTTTTAATCAAATATAT
1 TTTTTAATCAAATATAT
*
58281883 TTTTTAATCAATTATAT
1 TTTTTAATCAAATATAT
58281900 ACTTTTTTGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTAATCAAATATAT
Found at i:58281905 original size:19 final size:17
Alignment explanation
Indices: 58281866--58281906 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
58281856 TAGTTTTTTA
*
58281866 TTTTTAATCAAATATAT
1 TTTTTAATCAAATATAC
58281883 TTTTTAATCAATTATATAC
1 TTTTTAATCAA--ATATAC
58281902 TTTTT
1 TTTTT
58281907 TGGTGTTGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 11 0.52
19 10 0.48
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTTAATCAAATATAC
Found at i:58294345 original size:67 final size:69
Alignment explanation
Indices: 58294273--58294409 Score: 251
Period size: 67 Copynumber: 2.0 Consensus size: 69
58294263 GAGAATAAAT
58294273 AAAATTGGGTAACTAATTAAAATTTTAAA-TTTTTTTGAGATTAATGAGAATTTT-AAAAAAAAT
1 AAAATTGGGTAACTAATTAAAATTTTAAATTTTTTTTGAGATTAATGAGAATTTTAAAAAAAAAT
58294336 TAAG
66 TAAG
*
58294340 AAAATTGGGTGACTAATTAAAATTTTAAATTTTTTTTGAGATTAATGAGAATTTTAAAAAAAAAT
1 AAAATTGGGTAACTAATTAAAATTTTAAATTTTTTTTGAGATTAATGAGAATTTTAAAAAAAAAT
58294405 TAAG
66 TAAG
58294409 A
1 A
58294410 GAGTTTAATT
Statistics
Matches: 67, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
67 28 0.42
68 25 0.37
69 14 0.21
ACGTcount: A:0.47, C:0.01, G:0.12, T:0.39
Consensus pattern (69 bp):
AAAATTGGGTAACTAATTAAAATTTTAAATTTTTTTTGAGATTAATGAGAATTTTAAAAAAAAAT
TAAG
Found at i:58294590 original size:17 final size:18
Alignment explanation
Indices: 58294558--58294600 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
58294548 TGAATTCTGC
58294558 TATTTATATTCTTAAA-TCT
1 TATTTATA-TCTTAAACT-T
58294577 TATTTATA-CTTAAACTT
1 TATTTATATCTTAAACTT
58294594 TATTTAT
1 TATTTAT
58294601 TATGTATTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 14 0.61
18 1 0.04
19 8 0.35
ACGTcount: A:0.33, C:0.09, G:0.00, T:0.58
Consensus pattern (18 bp):
TATTTATATCTTAAACTT
Found at i:58297155 original size:30 final size:27
Alignment explanation
Indices: 58297116--58297177 Score: 88
Period size: 27 Copynumber: 2.2 Consensus size: 27
58297106 AAAAAAAAAG
58297116 TCAAATTAAAAAAAATTAACATTTATTATT
1 TCAAATT-AAAAAAA--AACATTTATTATT
*
58297146 TCAATTTAAAAAAAAACATTTATTATT
1 TCAAATTAAAAAAAAACATTTATTATT
58297173 TCAAA
1 TCAAA
58297178 AATATCTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
27 17 0.57
29 7 0.23
30 6 0.20
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (27 bp):
TCAAATTAAAAAAAAACATTTATTATT
Found at i:58298978 original size:6 final size:6
Alignment explanation
Indices: 58298967--58298996 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
58298957 TAGATCACCT
58298967 CGCTTC CGCTTC CGCTTC CGCTTC CGCTTC
1 CGCTTC CGCTTC CGCTTC CGCTTC CGCTTC
58298997 TGCCTCAAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.17, T:0.33
Consensus pattern (6 bp):
CGCTTC
Found at i:58301512 original size:13 final size:13
Alignment explanation
Indices: 58301496--58301521 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58301486 ATTTATTCCT
58301496 TATTATATTATTA
1 TATTATATTATTA
58301509 TATTATATTATTA
1 TATTATATTATTA
58301522 GCTTTGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:58301593 original size:29 final size:29
Alignment explanation
Indices: 58301558--58301624 Score: 134
Period size: 29 Copynumber: 2.3 Consensus size: 29
58301548 TCTATATTTA
58301558 TATTTGTTTTATTATATGTTATCATTATG
1 TATTTGTTTTATTATATGTTATCATTATG
58301587 TATTTGTTTTATTATATGTTATCATTATG
1 TATTTGTTTTATTATATGTTATCATTATG
58301616 TATTTGTTT
1 TATTTGTTT
58301625 ATATCTTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.22, C:0.03, G:0.10, T:0.64
Consensus pattern (29 bp):
TATTTGTTTTATTATATGTTATCATTATG
Found at i:58301614 original size:16 final size:16
Alignment explanation
Indices: 58301566--58301614 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
58301556 TATATTTGTT
58301566 TTATTATATGTTATCA
1 TTATTATATGTTATCA
*
58301582 TTATGTATTTG-T-T--
1 TTAT-TATATGTTATCA
58301595 TTATTATATGTTATCA
1 TTATTATATGTTATCA
58301611 TTAT
1 TTAT
58301615 GTATTTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
12 5 0.19
13 5 0.19
14 1 0.04
15 1 0.04
16 9 0.35
17 5 0.19
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.61
Consensus pattern (16 bp):
TTATTATATGTTATCA
Found at i:58301821 original size:3 final size:3
Alignment explanation
Indices: 58301813--58301844 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
58301803 TTATATGTTC
58301813 ATT ATT ATT ATT ATT ATT ATT ATT -TT -TT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
58301845 CTGTGGTTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 4 0.14
3 24 0.86
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
ATT
Found at i:58306403 original size:8 final size:8
Alignment explanation
Indices: 58306390--58306436 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
58306380 GTTCAAGCTA
58306390 AAAAAATC
1 AAAAAATC
58306398 AAAAAATC
1 AAAAAATC
58306406 --AAAA--
1 AAAAAATC
58306410 AAAAAATC
1 AAAAAATC
58306418 -AAAAATC
1 AAAAAATC
58306425 AAAAAAATC
1 -AAAAAATC
58306434 AAA
1 AAA
58306437 GTCAAAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 12
0.73 0.00 0.27
Matches are distributed among these distances:
6 8 0.24
7 7 0.21
8 11 0.33
9 7 0.21
ACGTcount: A:0.79, C:0.11, G:0.00, T:0.11
Consensus pattern (8 bp):
AAAAAATC
Found at i:58306409 original size:7 final size:7
Alignment explanation
Indices: 58306391--58306429 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
58306381 TTCAAGCTAA
58306391 AAAAATC
1 AAAAATC
58306398 AAAAAATC
1 -AAAAATC
58306406 AAAAA--
1 AAAAATC
58306411 AAAAATC
1 AAAAATC
58306418 AAAAATC
1 AAAAATC
58306425 AAAAA
1 AAAAA
58306430 AATCAAAGTC
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.17
7 17 0.59
8 7 0.24
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (7 bp):
AAAAATC
Found at i:58306414 original size:20 final size:19
Alignment explanation
Indices: 58306389--58306445 Score: 78
Period size: 19 Copynumber: 2.8 Consensus size: 19
58306379 AGTTCAAGCT
58306389 AAAAAAATCAAAAAATCAAA
1 AAAAAAATC-AAAAATCAAA
58306409 AAAAAAATCAAAAATCAAA
1 AAAAAAATCAAAAATCAAA
58306428 AAAATCAAAGTCAAAAAT
1 AAAA--AAA-TCAAAAAT
58306446 AGGAGAAAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
19 14 0.41
20 9 0.26
21 3 0.09
22 8 0.24
ACGTcount: A:0.75, C:0.11, G:0.02, T:0.12
Consensus pattern (19 bp):
AAAAAAATCAAAAATCAAA
Found at i:58306415 original size:12 final size:12
Alignment explanation
Indices: 58306398--58306422 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
58306388 TAAAAAAATC
58306398 AAAAAATCAAAA
1 AAAAAATCAAAA
58306410 AAAAAATCAAAA
1 AAAAAATCAAAA
58306422 A
1 A
58306423 TCAAAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.08, G:0.00, T:0.08
Consensus pattern (12 bp):
AAAAAATCAAAA
Found at i:58306444 original size:16 final size:17
Alignment explanation
Indices: 58306389--58306436 Score: 62
Period size: 16 Copynumber: 2.7 Consensus size: 17
58306379 AGTTCAAGCT
58306389 AAAAAAATCAAAAAATCAAA
1 AAAAAAATC-AAAAATC--A
58306409 AAAAAAATCAAAAATC-
1 AAAAAAATCAAAAATCA
58306425 AAAAAAATCAAA
1 AAAAAAATCAAA
58306437 GTCAAAAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
16 12 0.43
19 7 0.25
20 9 0.32
ACGTcount: A:0.79, C:0.10, G:0.00, T:0.10
Consensus pattern (17 bp):
AAAAAAATCAAAAATCA
Found at i:58306458 original size:6 final size:6
Alignment explanation
Indices: 58306449--58306482 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
58306439 CAAAAATAGG
58306449 AGAAAA AGAAAAA AGAAAAA AGAAAA AGAAAA AG
1 AGAAAA AG-AAAA AG-AAAA AGAAAA AGAAAA AG
58306483 GAGAGGTCAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 14 0.52
7 13 0.48
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:58306463 original size:7 final size:7
Alignment explanation
Indices: 58306451--58306481 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
58306441 AAAATAGGAG
58306451 AAAAAGA
1 AAAAAGA
58306458 AAAAAGA
1 AAAAAGA
58306465 AAAAAG-
1 AAAAAGA
58306471 AAAAAGA
1 AAAAAGA
58306478 AAAA
1 AAAA
58306482 GGAGAGGTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 6 0.26
7 17 0.74
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:58306467 original size:13 final size:14
Alignment explanation
Indices: 58306451--58306481 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
58306441 AAAATAGGAG
58306451 AAAAAGAAAAAAGA
1 AAAAAGAAAAAAGA
58306465 AAAAAG-AAAAAGA
1 AAAAAGAAAAAAGA
58306478 AAAA
1 AAAA
58306482 GGAGAGGTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (14 bp):
AAAAAGAAAAAAGA
Found at i:58307308 original size:8 final size:8
Alignment explanation
Indices: 58307290--58307325 Score: 56
Period size: 8 Copynumber: 4.5 Consensus size: 8
58307280 AGTCAAACAA
58307290 AAAAAATTG
1 AAAAAA-TG
58307299 AAAAAATG
1 AAAAAATG
58307307 -AAAAATG
1 AAAAAATG
58307314 AAAAAATG
1 AAAAAATG
58307322 AAAA
1 AAAA
58307326 GGTAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 7 0.27
8 13 0.50
9 6 0.23
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.14
Consensus pattern (8 bp):
AAAAAATG
Found at i:58307315 original size:15 final size:16
Alignment explanation
Indices: 58307291--58307325 Score: 63
Period size: 15 Copynumber: 2.2 Consensus size: 16
58307281 GTCAAACAAA
58307291 AAAAATTGAAAAAATG
1 AAAAATTGAAAAAATG
58307307 AAAAA-TGAAAAAATG
1 AAAAATTGAAAAAATG
58307322 AAAA
1 AAAA
58307326 GGTAAAAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.74, C:0.00, G:0.11, T:0.14
Consensus pattern (16 bp):
AAAAATTGAAAAAATG
Found at i:58307885 original size:16 final size:16
Alignment explanation
Indices: 58307864--58307899 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
58307854 TAGGACTATT
58307864 GTTTAGAAAACACCGA
1 GTTTAGAAAACACCGA
58307880 GTTTAGAAAACACCGA
1 GTTTAGAAAACACCGA
58307896 GTTT
1 GTTT
58307900 TGCATTGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (16 bp):
GTTTAGAAAACACCGA
Found at i:58308763 original size:46 final size:46
Alignment explanation
Indices: 58308466--58308745 Score: 454
Period size: 46 Copynumber: 6.1 Consensus size: 46
58308456 ATATCAATGG
* * *
58308466 AGATAGCAGATCTTGTCTTCCTATATTTGGTAGCGGAGGAGATCAA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGA
* *
58308512 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGTGGAGGAGATCAA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGA
58308558 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGA
*
58308604 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCAA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGA
58308650 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGA
1 AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGA
* * * *
58308696 AGATAGCAAATCTTATCTTCCTGTATTCT-GCAGTGGAGTAGATCGA
1 AGATAGCAGATCTTGTCTTCCTGTATT-TGGCAGCGGAGGAGATCGA
58308742 AGAT
1 AGAT
58308746 GGTGAATCTT
Statistics
Matches: 222, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 221 1.00
47 1 0.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (46 bp):
AGATAGCAGATCTTGTCTTCCTGTATTTGGCAGCGGAGGAGATCGA
Found at i:58308983 original size:44 final size:44
Alignment explanation
Indices: 58308930--58309266 Score: 151
Period size: 44 Copynumber: 7.7 Consensus size: 44
58308920 GCCATTAGTC
* *
58308930 CTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGCAGATT
* * ** *
58308974 CTGTCACCCTAAGCAGTAGTGGA-TCAGATCAAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGT-AGATTAAAGATTGCAGATT
* * * * * * * *
58309017 CTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATC-ACCCTAA-GCAGTAGTGGAGTAGATTAAAG--ATTGCAGATT
*
58309062 CTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGCAGATT
* * * * ** *
58309106 CTGTCACCCTAAGCAGTAGTGGTGCAGATCAAAGA-TGGTGAAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGCAGATT
* * * * *
58309149 CATATCTTCCC-AA-TA-TAGTGGAGAAGCAGATTTAAGCCATT--AG-TC
1 C-TATC-ACCCTAAGCAGTAGT-G-G-AGTAGATTAAAG--ATTGCAGATT
* * * *
58309194 CTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGACTGTAGATT
1 CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGCAGATT
* * *
58309238 CTGTCCCCCTAAGCAGTAGTGGAGCAGAT
1 CTATCACCCTAAGCAGTAGTGGAGTAGAT
58309267 CAACAATAAC
Statistics
Matches: 210, Mismatches: 57, Indels: 52
0.66 0.18 0.16
Matches are distributed among these distances:
41 5 0.02
42 4 0.02
43 48 0.23
44 110 0.52
45 33 0.16
46 6 0.03
47 2 0.01
48 2 0.01
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
CTATCACCCTAAGCAGTAGTGGAGTAGATTAAAGATTGCAGATT
Found at i:58309281 original size:132 final size:132
Alignment explanation
Indices: 58308727--58309269 Score: 942
Period size: 132 Copynumber: 4.1 Consensus size: 132
58308717 TGTATTCTGC
* * *
58308727 AGTGGAGTAGATCGAAGATGGTGAATCTTATCTTCCTAATACAGTGGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
*
58308792 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAAATTGCAGATTCTGTCACCCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCA
58308857 GT
131 GT
* * *
58308859 AGTGGATCAGATCAAAGATGGTGAATCTTATTTTCCCAATACAGTGGAGAAGCAAATTTAAGCCA
1 AGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
*
58308924 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCACCCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCA
58308989 GT
131 GT
*
58308991 AGTGGATCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
58309056 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCA
58309121 GT
131 GT
* * *
58309123 AGTGGTGCAGATCAAAGATGGTGAATCATATCTTCCCAATATAGTGGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* * * *
58309188 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTCAAAGACTGTAGATTCTGTCCCCCTAAGCA
66 TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCA
58309253 GT
131 GT
58309255 AGTGGAGCAGATCAA
1 AGTGGAGCAGATCAA
58309270 CAATAACGAA
Statistics
Matches: 391, Mismatches: 20, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 391 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.26
Consensus pattern (132 bp):
AGTGGAGCAGATCAAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
TTAGTCCTATCACCCTAAGCAGTAGTGGAGTAGGTTAAAGATTGCAGATTCTGTCACCCTAAGCA
GT
Found at i:58310878 original size:13 final size:13
Alignment explanation
Indices: 58310862--58310887 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
58310852 ATTTATTCCT
58310862 TATTATATTATTA
1 TATTATATTATTA
58310875 TATTATATTATTA
1 TATTATATTATTA
58310888 GCTTTGTGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
TATTATATTATTA
Found at i:58310959 original size:29 final size:29
Alignment explanation
Indices: 58310924--58310990 Score: 134
Period size: 29 Copynumber: 2.3 Consensus size: 29
58310914 TCTATATTTA
58310924 TATTTGTTTTATTATATGTTATCATTATG
1 TATTTGTTTTATTATATGTTATCATTATG
58310953 TATTTGTTTTATTATATGTTATCATTATG
1 TATTTGTTTTATTATATGTTATCATTATG
58310982 TATTTGTTT
1 TATTTGTTT
58310991 ATATCTTTTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.22, C:0.03, G:0.10, T:0.64
Consensus pattern (29 bp):
TATTTGTTTTATTATATGTTATCATTATG
Found at i:58310980 original size:16 final size:16
Alignment explanation
Indices: 58310932--58310980 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
58310922 TATATTTGTT
58310932 TTATTATATGTTATCA
1 TTATTATATGTTATCA
*
58310948 TTATGTATTTG-T-T--
1 TTAT-TATATGTTATCA
58310961 TTATTATATGTTATCA
1 TTATTATATGTTATCA
58310977 TTAT
1 TTAT
58310981 GTATTTGTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 10
0.68 0.05 0.26
Matches are distributed among these distances:
12 5 0.19
13 5 0.19
14 1 0.04
15 1 0.04
16 9 0.35
17 5 0.19
ACGTcount: A:0.27, C:0.04, G:0.08, T:0.61
Consensus pattern (16 bp):
TTATTATATGTTATCA
Found at i:58311185 original size:3 final size:3
Alignment explanation
Indices: 58311177--58311217 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
58311167 GTTTATATGT
*
58311177 TTA TTA TTA TT- TTA TTA TTA TTA TTA TTA TTA TTT TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
58311218 CTGTGGTTGT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:58315221 original size:16 final size:16
Alignment explanation
Indices: 58315200--58315232 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
58315190 TTTGAAAGAG
58315200 TTTCAAATATATATGC
1 TTTCAAATATATATGC
*
58315216 TTTCAAATTTATATGC
1 TTTCAAATATATATGC
58315232 T
1 T
58315233 CTAAAATAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGC
Found at i:58316556 original size:22 final size:23
Alignment explanation
Indices: 58316531--58316573 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
58316521 AAAAATTTAA
58316531 AAATTAAAG-ACAAAAATTAATT
1 AAATTAAAGTACAAAAATTAATT
*
58316553 AAATTAAAGTATAAAAATTAA
1 AAATTAAAGTACAAAAATTAA
58316574 ATATAGAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (23 bp):
AAATTAAAGTACAAAAATTAATT
Found at i:58318820 original size:43 final size:43
Alignment explanation
Indices: 58318700--58318834 Score: 147
Period size: 43 Copynumber: 3.2 Consensus size: 43
58318690 TTCACAAACG
* *
58318700 CGCTAAAGGTCA-TATTCTTTAGCGGTGT-TTTTATAGAAAACGC
1 CGCTAAAGGTCATTA-TCTTTAGCGGT-TCCTTTATAGAAAATGC
* *
58318743 CGCTAAAGGTCATGATCTTTAGCGG--CGCTGTTATAGCAAATGC
1 CGCTAAAGGTCATTATCTTTAGCGGTTC-CT-TTATAGAAAATGC
*
58318786 CGCTAAAAGTCATTATCTTTAGCGGTTCCTTTATA-AAAATG-
1 CGCTAAAGGTCATTATCTTTAGCGGTTCCTTTATAGAAAATGC
58318827 CGCTAAAG
1 CGCTAAAG
58318835 AACATGACCT
Statistics
Matches: 78, Mismatches: 8, Indels: 14
0.78 0.08 0.14
Matches are distributed among these distances:
41 7 0.09
42 6 0.08
43 61 0.78
44 3 0.04
45 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.32
Consensus pattern (43 bp):
CGCTAAAGGTCATTATCTTTAGCGGTTCCTTTATAGAAAATGC
Found at i:58318870 original size:84 final size:82
Alignment explanation
Indices: 58318700--58318911 Score: 214
Period size: 84 Copynumber: 2.5 Consensus size: 82
58318690 TTCACAAACG
* * * ** *
58318700 CGCTAAAGGTCATATTCTTTAGCGGTGTTTTTATAGAAAACGCCGCTAAAGGTCATGATCTTTAG
1 CGCTAAAAGTCATA-TCTTTAGCGGT-ATTTTATA-AAAATG-CGCTAAAGAACATGACCTTTAG
*
58318765 CGGCGCTGTTATAGCAAATGC
62 CGGCACTGTTATAGCAAATGC
58318786 CGCTAAAAGTCATTATCTTTAGCGGT-TCCTTTATAAAAATGCGCTAAAGAACATGACCTTTAGC
1 CGCTAAAAGTCA-TATCTTTAGCGGTAT--TTTATAAAAATGCGCTAAAGAACATGACCTTTAGC
***
58318850 GGCACT-TTATTTTACAATGC
63 GGCACTGTTATAGCA-AATGC
58318870 CGCTAAAAGTACCAT-TCTTTAGCGGTATTTTACTAAAAATGC
1 CGCTAAAAGT--CATATCTTTAGCGGTATTTTA-TAAAAATGC
58318912 CACTAAATTT
Statistics
Matches: 109, Mismatches: 9, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
83 9 0.08
84 61 0.56
85 7 0.06
86 30 0.28
87 2 0.02
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (82 bp):
CGCTAAAAGTCATATCTTTAGCGGTATTTTATAAAAATGCGCTAAAGAACATGACCTTTAGCGGC
ACTGTTATAGCAAATGC
Found at i:58319082 original size:15 final size:15
Alignment explanation
Indices: 58319062--58319095 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
58319052 GTATAATTCA
58319062 AATTATTCTTACAAT
1 AATTATTCTTACAAT
*
58319077 AATTATTCTTACAGT
1 AATTATTCTTACAAT
58319092 AATT
1 AATT
58319096 TCTATTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (15 bp):
AATTATTCTTACAAT
Found at i:58319134 original size:12 final size:12
Alignment explanation
Indices: 58319117--58319144 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
58319107 TAACACAAAA
58319117 TAACATTTTGAT
1 TAACATTTTGAT
58319129 TAACATTTTGAT
1 TAACATTTTGAT
58319141 TAAC
1 TAAC
58319145 GACAGTCCCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.11, G:0.07, T:0.46
Consensus pattern (12 bp):
TAACATTTTGAT
Found at i:58319947 original size:7 final size:7
Alignment explanation
Indices: 58319937--58320136 Score: 143
Period size: 7 Copynumber: 28.3 Consensus size: 7
58319927 CCAAAACCCA
58319937 AAACCAT
1 AAACCAT
58319944 AAACCAT
1 AAACCAT
*
58319951 AAACCCCT
1 AAA-CCAT
*
58319959 AAACCTT
1 AAACCAT
*
58319966 AAA-CACC
1 AAACCA-T
* *
58319973 AACCCCT
1 AAACCAT
58319980 AAACCAT
1 AAACCAT
*
58319987 AAACCAC
1 AAACCAT
* *
58319994 AACCCTT
1 AAACCAT
*
58320001 AAACCCT
1 AAACCAT
*
58320008 AAACCGT
1 AAACCAT
58320015 AAACCAT
1 AAACCAT
* *
58320022 AATCCCT
1 AAACCAT
58320029 AAACCCAT
1 AAA-CCAT
*
58320037 AATCCAT
1 AAACCAT
*
58320044 AAACCTT
1 AAACCAT
58320051 AAACCAT
1 AAACCAT
58320058 AAACCAT
1 AAACCAT
*
58320065 AAACTAT
1 AAACCAT
* *
58320072 AATCCCT
1 AAACCAT
*
58320079 AAACCCT
1 AAACCAT
*
58320086 AAA-TATT
1 AAACCA-T
58320093 AAACCAT
1 AAACCAT
58320100 AAACCAT
1 AAACCAT
* *
58320107 ATACCCT
1 AAACCAT
58320114 AAACCAT
1 AAACCAT
*
58320121 AAACCCT
1 AAACCAT
*
58320128 AAACTAT
1 AAACCAT
58320135 AA
1 AA
58320137 TGATAATTAA
Statistics
Matches: 147, Mismatches: 40, Indels: 12
0.74 0.20 0.06
Matches are distributed among these distances:
6 1 0.01
7 133 0.90
8 13 0.09
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (7 bp):
AAACCAT
Found at i:58319947 original size:14 final size:14
Alignment explanation
Indices: 58319920--58320062 Score: 55
Period size: 14 Copynumber: 10.1 Consensus size: 14
58319910 CCCTAAATCC
*
58319920 CCCAAACCCA-AAA
1 CCCAAAACCATAAA
58319933 CCCAAAACCATAAA
1 CCCAAAACCATAAA
*
58319947 -CCATAAACCCCTAAA
1 CCCA-AAA-CCATAAA
* *
58319962 CCTTAAACACC--AAC
1 CC-CAAA-ACCATAAA
*
58319976 CCCTAAACCATAAA
1 CCCAAAACCATAAA
* *
58319990 -CCACAACCCTTAAA
1 CCCA-AAACCATAAA
* *
58320004 CCCTAAACCGTAAA
1 CCCAAAACCATAAA
* *
58320018 -CCATAATCCCTAAA
1 CCCA-AAACCATAAA
*
58320032 CCCATAATCCATAAA
1 CCCA-AAACCATAAA
**
58320047 CCTTAAACCATAAA
1 CCCAAAACCATAAA
58320061 CC
1 CC
58320063 ATAAACTATA
Statistics
Matches: 98, Mismatches: 20, Indels: 23
0.70 0.14 0.16
Matches are distributed among these distances:
12 3 0.03
13 18 0.18
14 47 0.48
15 23 0.23
16 5 0.05
17 2 0.02
ACGTcount: A:0.47, C:0.38, G:0.01, T:0.14
Consensus pattern (14 bp):
CCCAAAACCATAAA
Found at i:58320559 original size:40 final size:40
Alignment explanation
Indices: 58320497--58320592 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
58320487 ATTTTTTGCA
* *
58320497 GCGTTTTTCAAAGAATGC--CGCTAATGCTCGACCTATAATG
1 GCGTTTTTCAAA-AA-GCGTCGCTAATGATCGACCTATAACG
* *
58320537 GCGTTTTTCAACAAGCGTCGCTAATGATCGACCTATAGCG
1 GCGTTTTTCAAAAAGCGTCGCTAATGATCGACCTATAACG
*
58320577 GCTTTTTTCAAAAAGC
1 GCGTTTTTCAAAAAGC
58320593 ACCGCAAATG
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
38 2 0.04
39 2 0.04
40 44 0.92
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (40 bp):
GCGTTTTTCAAAAAGCGTCGCTAATGATCGACCTATAACG
Found at i:58320621 original size:154 final size:154
Alignment explanation
Indices: 58320426--58320706 Score: 420
Period size: 154 Copynumber: 1.8 Consensus size: 154
58320416 ATTTGCGGTG
** * *
58320426 TTTTTCAAAAAATGCCGCTAATGCCACTAAAGCTCAACATAAAATGA-TGACGTTGTGCTTAATT
1 TTTTTCAAAAAACACCGCAAATGCCACTAAAGCTCAACATAAAATGACTG-CCTTGTGCTTAATT
* * *
58320490 TTTTGCAGCGTTTTTCAAAGAATGCCGCTAATGCTCGACCTATAATGGCGTTTTTCAACAAGCGT
65 TTTTGCAGCGTTTTTCAAAGAACGCCGCTAATGCTCGACCTATAACGGCGTTTTTCAAAAAGCGT
58320555 CGCTAATGATCGACCTATAGCGGCT
130 CGCTAATGATCGACCTATAGCGGCT
*
58320580 TTTTTCAAAAAGCACCGCAAATGCCACTAAAGCTCAACATAAAATGACTGCCTTGTGCTTAATTT
1 TTTTTCAAAAAACACCGCAAATGCCACTAAAGCTCAACATAAAATGACTGCCTTGTGCTTAATTT
* ** * * *
58320645 TTTGCGGCGTTTTTGGAAGAGCGCTGCTAATGCTCGACCTATAGCGGCGTTTTTCAAAAAGC
66 TTTGCAGCGTTTTTCAAAGAACGCCGCTAATGCTCGACCTATAACGGCGTTTTTCAAAAAGC
58320707 TCCACAATTG
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
154 110 0.98
155 2 0.02
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.31
Consensus pattern (154 bp):
TTTTTCAAAAAACACCGCAAATGCCACTAAAGCTCAACATAAAATGACTGCCTTGTGCTTAATTT
TTTGCAGCGTTTTTCAAAGAACGCCGCTAATGCTCGACCTATAACGGCGTTTTTCAAAAAGCGTC
GCTAATGATCGACCTATAGCGGCT
Found at i:58321689 original size:90 final size:90
Alignment explanation
Indices: 58321527--58321697 Score: 238
Period size: 90 Copynumber: 1.9 Consensus size: 90
58321517 GTTGTAGATG
* * *
58321527 AACCACCAAATGTTGCAAGTTAATAGCTACTAGACGGTTGTGAATACACAACATAATTGCAAATA
1 AACCACCAAAGGTTACAAGTTAATAGCTACCAGACGGTTGTGAATACACAACATAATTGCAAATA
58321592 AAAGCTGCCAGATAATGGGTGGGCA
66 AAAGCTGCCAGATAATGGGTGGGCA
* * * **
58321617 AACCACCAAAGGTTACAAGTTAATACGCTACCAGATGGTTGTGAATATACAACAT-TTTTTAAGA
1 AACCACCAAAGGTTACAAGTTAATA-GCTACCAGACGGTTGTGAATACACAACATAATTGCAA-A
58321681 T-AAAGCTGCCAGATAAT
64 TAAAAGCTGCCAGATAAT
58321698 ATGTAGATGT
Statistics
Matches: 71, Mismatches: 8, Indels: 4
0.86 0.10 0.05
Matches are distributed among these distances:
90 43 0.61
91 28 0.39
ACGTcount: A:0.39, C:0.18, G:0.19, T:0.25
Consensus pattern (90 bp):
AACCACCAAAGGTTACAAGTTAATAGCTACCAGACGGTTGTGAATACACAACATAATTGCAAATA
AAAGCTGCCAGATAATGGGTGGGCA
Found at i:58321714 original size:90 final size:90
Alignment explanation
Indices: 58321519--58321714 Score: 218
Period size: 90 Copynumber: 2.2 Consensus size: 90
58321509 CACACTGGGT
* * *
58321519 TGTAGATGAACCACCAAATGTTGCAAGTTAATAGCTACTAGACGGTTGTGAATACACAACATAAT
1 TGTAGATGAACCACCAAAGGTTACAAGTTAATAGCTACCAGACGGTTGTGAATACACAACATAAT
*
58321584 TGCAAATAAAAGCTGCCAGATAATG
66 TGCAAATAAAAGCTGCCAGATAATA
* * *** * * *
58321609 GGTGGGCAAACCACCAAAGGTTACAAGTTAATACGCTACCAGATGGTTGTGAATATACAACAT-T
1 TGTAGATGAACCACCAAAGGTTACAAGTTAATA-GCTACCAGACGGTTGTGAATACACAACATAA
**
58321673 TTTTAAGAT-AAAGCTGCCAGATAATA
65 TTGCAA-ATAAAAGCTGCCAGATAATA
58321699 TGTAGATGTAA-CACCA
1 TGTAGATG-AACCACCA
58321715 GATTTGCAGA
Statistics
Matches: 84, Mismatches: 19, Indels: 6
0.77 0.17 0.06
Matches are distributed among these distances:
90 54 0.64
91 30 0.36
ACGTcount: A:0.39, C:0.17, G:0.19, T:0.25
Consensus pattern (90 bp):
TGTAGATGAACCACCAAAGGTTACAAGTTAATAGCTACCAGACGGTTGTGAATACACAACATAAT
TGCAAATAAAAGCTGCCAGATAATA
Found at i:58326107 original size:282 final size:282
Alignment explanation
Indices: 58325597--58326149 Score: 1043
Period size: 282 Copynumber: 2.0 Consensus size: 282
58325587 AAAGTAGGCT
*
58325597 CCAATATATATTCTCATTGAAAATTGCATTTCGAATAGTGGTAGACTCTTCAACCGCATCTTGCT
1 CCAATATATATTCTCATTGAAAATTGCATTTCGAACAGTGGTAGACTCTTCAACCGCATCTTGCT
58325662 CAACCAACTGAGGTACCTTAGAAATCAATTAAAGAAACAATTATAACTAAAACTTTAATCTCATG
66 CAACCAACTGAGGTACCTTAGAAATCAATTAAAGAAACAATTATAACTAAAACTTTAATCTCATG
58325727 TCATCAAGGAAAAAAATATGAAACGCATATACACTTAAGGAATTTAATTAAAAATTTTGCATGTT
131 TCATCAAGGAAAAAAATATGAAACGCATATACACTTAAGGAATTTAATTAAAAATTTTGCATGTT
58325792 ATGCCTTCAGTTGTAATTGTTATAATTACATAGAATAAAGTAGGAATAAAGGGTTGTAGGATATA
196 ATGCCTTCAGTTGTAATTGTTATAATTACATAGAATAAAGTAGGAATAAAGGGTTGTAGGATATA
58325857 TACCTTTGTTTCTTTTAGCATA
261 TACCTTTGTTTCTTTTAGCATA
* * * *
58325879 CCAATCTATATTCTCGTTGAAAATTGCATTTTGAACAGTGGTAGATTCTTCAACCGCATCTTGCT
1 CCAATATATATTCTCATTGAAAATTGCATTTCGAACAGTGGTAGACTCTTCAACCGCATCTTGCT
58325944 CAACCAACTGAGGTACCTTAGAAATCAATTAAAGAAACAATTATAACTAAAACTTTAATCTCATG
66 CAACCAACTGAGGTACCTTAGAAATCAATTAAAGAAACAATTATAACTAAAACTTTAATCTCATG
*
58326009 TCATCAAGGAAAAAAATATGAAATGCATATACACTTAAGGAATTTAATTAAAAATTTTGCATGTT
131 TCATCAAGGAAAAAAATATGAAACGCATATACACTTAAGGAATTTAATTAAAAATTTTGCATGTT
*
58326074 ATGCCTTTAGTTGTAATTGTTATAATTACATAGAATAAAGTAGGAATAAAGGGTTGTAGGATATA
196 ATGCCTTCAGTTGTAATTGTTATAATTACATAGAATAAAGTAGGAATAAAGGGTTGTAGGATATA
58326139 TACCTTTGTTT
261 TACCTTTGTTT
58326150 TGCAATGTAC
Statistics
Matches: 264, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
282 264 1.00
ACGTcount: A:0.38, C:0.14, G:0.14, T:0.34
Consensus pattern (282 bp):
CCAATATATATTCTCATTGAAAATTGCATTTCGAACAGTGGTAGACTCTTCAACCGCATCTTGCT
CAACCAACTGAGGTACCTTAGAAATCAATTAAAGAAACAATTATAACTAAAACTTTAATCTCATG
TCATCAAGGAAAAAAATATGAAACGCATATACACTTAAGGAATTTAATTAAAAATTTTGCATGTT
ATGCCTTCAGTTGTAATTGTTATAATTACATAGAATAAAGTAGGAATAAAGGGTTGTAGGATATA
TACCTTTGTTTCTTTTAGCATA
Found at i:58330908 original size:3 final size:3
Alignment explanation
Indices: 58330900--58330947 Score: 96
Period size: 3 Copynumber: 16.0 Consensus size: 3
58330890 AAATATTAGT
58330900 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
58330948 AGACAACTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:58341117 original size:21 final size:22
Alignment explanation
Indices: 58341088--58341134 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
58341078 CAGAAGGAGT
*
58341088 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
58341110 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
58341131 GAGT
1 GAGT
58341135 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:58343399 original size:17 final size:17
Alignment explanation
Indices: 58343379--58343438 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
58343369 GTCCATGTTG
58343379 ATATTTTTATTTTTATT
1 ATATTTTTATTTTTATT
* *
58343396 ATATTTATATTTATA-T
1 ATATTTTTATTTTTATT
*
58343412 AAATTTTTTATTTTT-TT
1 ATA-TTTTTATTTTTATT
58343429 AT-TTTTTATT
1 ATATTTTTATT
58343439 ACATAAGGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 8 0.23
16 3 0.09
17 24 0.69
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
ATATTTTTATTTTTATT
Found at i:58343676 original size:7 final size:7
Alignment explanation
Indices: 58343664--58343714 Score: 79
Period size: 7 Copynumber: 7.6 Consensus size: 7
58343654 CCTGTTTCTA
58343664 GGTTTAG
1 GGTTTAG
58343671 GGTTTA-
1 GGTTTAG
58343677 GGTTTA-
1 GGTTTAG
*
58343683 GGTTTAA
1 GGTTTAG
58343690 GGTTTAG
1 GGTTTAG
58343697 GGTTTAG
1 GGTTTAG
58343704 GGTTTAG
1 GGTTTAG
58343711 GGTT
1 GGTT
58343715 AAAATTTAAA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
6 12 0.29
7 30 0.71
ACGTcount: A:0.16, C:0.00, G:0.39, T:0.45
Consensus pattern (7 bp):
GGTTTAG
Found at i:58343680 original size:13 final size:13
Alignment explanation
Indices: 58343662--58343714 Score: 81
Period size: 13 Copynumber: 4.0 Consensus size: 13
58343652 TGCCTGTTTC
58343662 TAGGTTTAGGGTT
1 TAGGTTTAGGGTT
58343675 TAGGTTTA-GGTT
1 TAGGTTTAGGGTT
58343687 TAAGGTTTAGGGTT
1 T-AGGTTTAGGGTT
58343701 TAGGGTTTAGGGTT
1 TA-GGTTTAGGGTT
58343715 AAAATTTAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
12 5 0.14
13 16 0.43
14 16 0.43
ACGTcount: A:0.17, C:0.00, G:0.38, T:0.45
Consensus pattern (13 bp):
TAGGTTTAGGGTT
Found at i:58346601 original size:33 final size:32
Alignment explanation
Indices: 58346527--58346643 Score: 103
Period size: 33 Copynumber: 3.6 Consensus size: 32
58346517 TGTTTTTGTT
* **
58346527 ATAAGTGAGCCTATATGTATGCGAACCC-CCG
1 ATAAGCGAGCCTATATGTATGCGAACCCTAGG
*
58346558 ATACATGCGAGCCTATATGTATACGAACCCTAGG
1 ATA-A-GCGAGCCTATATGTATGCGAACCCTAGG
* * *
58346592 AATAAGCGAGTCAATATGTATGTGAACCCTAGG
1 -ATAAGCGAGCCTATATGTATGCGAACCCTAGG
*
58346625 -TACATGTGAGCCTATATGT
1 ATA-A-GCGAGCCTATATGT
58346644 TGTGTGAAAC
Statistics
Matches: 69, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
31 5 0.07
32 2 0.03
33 57 0.83
34 2 0.03
35 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (32 bp):
ATAAGCGAGCCTATATGTATGCGAACCCTAGG
Found at i:58346657 original size:34 final size:34
Alignment explanation
Indices: 58346612--58346678 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
58346602 TCAATATGTA
* **
58346612 TGTGAACCCTAGGTACATGTGAGCCTATATGTTG
1 TGTGAAACCTAGGTACATGCAAGCCTATATGTTG
* *
58346646 TGTGAAACCTAGGTGCATGCAAGCCTGTATGTT
1 TGTGAAACCTAGGTACATGCAAGCCTATATGTT
58346679 ATGCGAACCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (34 bp):
TGTGAAACCTAGGTACATGCAAGCCTATATGTTG
Found at i:58349953 original size:34 final size:34
Alignment explanation
Indices: 58349912--58349989 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
58349902 ATACAATATG
* *
58349912 ACATGCTTATAA-CGGATCAATATGGTAACAATAA
1 ACATGCTTA-AACCAGATCAATACGGTAACAATAA
* * *
58349946 ATATGCTTAAACCAGATTAATACGGTATCAATAA
1 ACATGCTTAAACCAGATCAATACGGTAACAATAA
58349980 ACATGCTTAA
1 ACATGCTTAA
58349990 CATGTATTTC
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
33 2 0.05
34 35 0.95
ACGTcount: A:0.44, C:0.15, G:0.13, T:0.28
Consensus pattern (34 bp):
ACATGCTTAAACCAGATCAATACGGTAACAATAA
Found at i:58350894 original size:11 final size:11
Alignment explanation
Indices: 58350880--58350905 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
58350870 TTTTTATATA
58350880 TTTTTAAGAAT
1 TTTTTAAGAAT
58350891 TTTTTAAGAAT
1 TTTTTAAGAAT
58350902 TTTT
1 TTTT
58350906 ATTTTTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (11 bp):
TTTTTAAGAAT
Found at i:58351729 original size:36 final size:36
Alignment explanation
Indices: 58351679--58351765 Score: 129
Period size: 36 Copynumber: 2.4 Consensus size: 36
58351669 ACTTATATGA
* * *
58351679 TATTATGTGCGAGCCATGTTACGCGAACCATGTGTT
1 TATTATATGTGAGCCATGTTACGCAAACCATGTGTT
*
58351715 TATTATATGTGAGCCATGTTATGCAAACCATGTGTT
1 TATTATATGTGAGCCATGTTACGCAAACCATGTGTT
*
58351751 TATTATAAGTGAGCC
1 TATTATATGTGAGCC
58351766 TATATGCATG
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.26, C:0.16, G:0.22, T:0.36
Consensus pattern (36 bp):
TATTATATGTGAGCCATGTTACGCAAACCATGTGTT
Found at i:58351814 original size:33 final size:33
Alignment explanation
Indices: 58351755--58351903 Score: 133
Period size: 33 Copynumber: 4.5 Consensus size: 33
58351745 TGTGTTTATT
* ** *
58351755 ATAAGTGAGCCTATATGCATGGGAACCCTATGA
1 ATAAGTGAGCCTATATGTATACGAACCCTAGGA
58351788 ATAAGTGAGCCTATATGTATACGAACCCCT--G-
1 ATAAGTGAGCCTATATGTATACGAA-CCCTAGGA
* *
58351819 ATACATGCGAGCCTATATGTATACAAACCCTAGGA
1 ATA-A-GTGAGCCTATATGTATACGAACCCTAGGA
* * * * *
58351854 ATAAGCGAGTCAATATGTATGCGAACCCTAGGT
1 ATAAGTGAGCCTATATGTATACGAACCCTAGGA
* *
58351887 ACATGTGAGCCTATATG
1 ATAAGTGAGCCTATATG
58351904 CTGTGTGAAA
Statistics
Matches: 95, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
31 3 0.03
32 6 0.06
33 77 0.81
34 6 0.06
35 3 0.03
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (33 bp):
ATAAGTGAGCCTATATGTATACGAACCCTAGGA
Found at i:58351848 original size:66 final size:66
Alignment explanation
Indices: 58351778--58351903 Score: 173
Period size: 66 Copynumber: 1.9 Consensus size: 66
58351768 TATGCATGGG
* * *
58351778 AACCCTATGAATAAGTGAGCCTATATGTATACGAACCCCT-GATACATGCGAGCCTATATGTATA
1 AACCCTAGGAATAAGCGAGCCAATATGTATACGAA-CCCTAGATACATGCGAGCCTATATGTATA
58351842 CA
65 CA
* * * *
58351844 AACCCTAGGAATAAGCGAGTCAATATGTATGCGAACCCTAGGTACATGTGAGCCTATATG
1 AACCCTAGGAATAAGCGAGCCAATATGTATACGAACCCTAGATACATGCGAGCCTATATG
58351904 CTGTGTGAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
65 4 0.08
66 48 0.92
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (66 bp):
AACCCTAGGAATAAGCGAGCCAATATGTATACGAACCCTAGATACATGCGAGCCTATATGTATAC
A
Found at i:58355436 original size:34 final size:34
Alignment explanation
Indices: 58355397--58355472 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 34
58355387 ATACAATATG
* *
58355397 ACATGCTTATAAC-GAATCAATATGGTAACAATAA
1 ACATGCTTAAAACAG-ATCAATACGGTAACAATAA
* *
58355431 ACATGCTTAAAACAGATTAATACGGTAGCAATAA
1 ACATGCTTAAAACAGATCAATACGGTAACAATAA
58355465 ACATGCTT
1 ACATGCTT
58355473 TACATGTATT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 36 0.97
35 1 0.03
ACGTcount: A:0.45, C:0.16, G:0.13, T:0.26
Consensus pattern (34 bp):
ACATGCTTAAAACAGATCAATACGGTAACAATAA
Found at i:58356306 original size:16 final size:16
Alignment explanation
Indices: 58356287--58356317 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
58356277 TATTTTACTG
58356287 CATATAAATTTGAAAC
1 CATATAAATTTGAAAC
*
58356303 CATATATATTTGAAA
1 CATATAAATTTGAAA
58356318 ACTTTTTCAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.35
Consensus pattern (16 bp):
CATATAAATTTGAAAC
Found at i:58361588 original size:44 final size:44
Alignment explanation
Indices: 58361525--58361618 Score: 179
Period size: 44 Copynumber: 2.1 Consensus size: 44
58361515 GTCTCGACTT
*
58361525 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCATATGATTATCAAATATAAGTATTGTATTAACCAAA
58361569 TCATTTTCATATGATTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCATATGATTATCAAATATAAGTATTGTATTAACCAAA
58361613 TCATTT
1 TCATTT
58361619 ATTGAATATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (44 bp):
TCATTTTCATATGATTATCAAATATAAGTATTGTATTAACCAAA
Found at i:58361612 original size:22 final size:22
Alignment explanation
Indices: 58361543--58361613 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 22
58361533 ATATGCTTAT
58361543 CAAATATAAGTATTGTATTAAC
1 CAAATATAAGTATTGTATTAAC
** *
58361565 CAAATCAT-TTTCATATG-ATT-AT
1 CAAAT-ATAAGT-AT-TGTATTAAC
58361587 CAAATATAAGTATTGTATTAAC
1 CAAATATAAGTATTGTATTAAC
58361609 CAAAT
1 CAAAT
58361614 CATTTATTGA
Statistics
Matches: 37, Mismatches: 6, Indels: 12
0.67 0.11 0.22
Matches are distributed among these distances:
20 2 0.05
21 7 0.19
22 19 0.51
23 7 0.19
24 2 0.05
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (22 bp):
CAAATATAAGTATTGTATTAAC
Found at i:58361630 original size:22 final size:21
Alignment explanation
Indices: 58361597--58361640 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
58361587 CAAATATAAG
*
58361597 TATTGTATTAACCAAATCATT
1 TATTGAATTAACCAAATCATT
58361618 TATTGAATATAACCAAATCATT
1 TATTGAAT-TAACCAAATCATT
58361640 T
1 T
58361641 TCATATGCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 7 0.33
22 14 0.67
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (21 bp):
TATTGAATTAACCAAATCATT
Found at i:58362251 original size:13 final size:13
Alignment explanation
Indices: 58362229--58362279 Score: 75
Period size: 13 Copynumber: 3.9 Consensus size: 13
58362219 ACACTCAAAT
58362229 TTCTCAAAAGCAC
1 TTCTCAAAAGCAC
*
58362242 TTCTCCAAAGCAC
1 TTCTCAAAAGCAC
* *
58362255 TTCTGAAAAGCAA
1 TTCTCAAAAGCAC
58362268 TTCTCAAAAGCA
1 TTCTCAAAAGCA
58362280 ATAAAGAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 33 1.00
ACGTcount: A:0.39, C:0.27, G:0.10, T:0.24
Consensus pattern (13 bp):
TTCTCAAAAGCAC
Found at i:58363562 original size:27 final size:24
Alignment explanation
Indices: 58363498--58363555 Score: 116
Period size: 24 Copynumber: 2.4 Consensus size: 24
58363488 ACTTATGCAA
58363498 ATCATCATCAAATGATCAAATTTC
1 ATCATCATCAAATGATCAAATTTC
58363522 ATCATCATCAAATGATCAAATTTC
1 ATCATCATCAAATGATCAAATTTC
58363546 ATCATCATCA
1 ATCATCATCA
58363556 TCAAATGCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.41, C:0.22, G:0.03, T:0.33
Consensus pattern (24 bp):
ATCATCATCAAATGATCAAATTTC
Found at i:58368213 original size:125 final size:125
Alignment explanation
Indices: 58367997--58368268 Score: 426
Period size: 125 Copynumber: 2.2 Consensus size: 125
58367987 TTATTTTGAG
* **
58367997 TTGACATTTCTG-GTCAAATAGTATAAAATCGCTTCTACCAGGATGCTATCAGAGAAGAAATTGT
1 TTGACGTTTCTGAG-CAAATAGTATAAAATCGCTGATACCAGGATGCTATCAGAGAAGAAATTGT
58368061 GAAATCGTGCCCTCGTGGACGCCATTTCGAC-ACAGTTGGTCATGTAAGAAATAATT-TTTT
65 GAAATCGTGCCCTCGTGGACGCCATTTCG-CTACAGTTGGTCATGTAAGAAATAATTATTTT
58368121 TTGACGTTTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTAT-ATGAGAAGAAATTG
1 TTGACG-TTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTATCA-GAGAAGAAATTG
* * *
58368185 TGAAATCGTGCCCTTGTGGACGCGATTTCGCTACAGTTGGTCATGTAGGAAATAATTATTTT
64 TGAAATCGTGCCCTCGTGGACGCCATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
58368247 TTGACGTTTCTGAGCAAATAGT
1 TTGACGTTTCTGAGCAAATAGT
58368269 GTCAAATTGT
Statistics
Matches: 137, Mismatches: 6, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
124 7 0.05
125 119 0.87
126 11 0.08
ACGTcount: A:0.30, C:0.16, G:0.22, T:0.32
Consensus pattern (125 bp):
TTGACGTTTCTGAGCAAATAGTATAAAATCGCTGATACCAGGATGCTATCAGAGAAGAAATTGTG
AAATCGTGCCCTCGTGGACGCCATTTCGCTACAGTTGGTCATGTAAGAAATAATTATTTT
Found at i:58371592 original size:29 final size:30
Alignment explanation
Indices: 58371559--58372284 Score: 823
Period size: 29 Copynumber: 24.3 Consensus size: 30
58371549 TTTTTAATTA
58371559 AATTAAATTAGGTTAGGGTTTAGGG-TTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
58371588 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
*
58371618 AATCAAATTAGGTTAGGG-TTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
58371647 AATTAAATTAGGTTAGGG-TTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
*
58371676 AATTAAATTAGGTTAGGGTTT----TTAATTA
1 AATTAAATTAGGTTAGGGTTTAGGGTT--TTT
*
58371704 AATTAAATTAGGTTAGGATTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
*
58371734 AATTAAATTAGGTTAGAG-TTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
*
58371763 AATTAAATTAGGTTAGGGTTT----TTAATTA
1 AATTAAATTAGGTTAGGGTTTAGGGTT--TTT
*
58371791 AATTAAATTAGGTTAGGGTTTAAGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
58371821 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
58371851 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
58371881 AATTAAATTAGGTTAGGG-TTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
* *
58371910 AATTAAATTAGGTTAGGATTT----TTAATTA
1 AATTAAATTAGGTTAGGGTTTAGGGTT--TTT
*
58371938 AATTAAATTAGGTTAGGGTTTAGTGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
58371968 AATTAAATTAGGTTAGGG-TTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
*
58371997 AATTAAATTAGGTTAGGGTTT----TTAATTA
1 AATTAAATTAGGTTAGGGTTTAGGGTT--TTT
58372025 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
* *
58372055 AATTAAATTAGTTTAGGGTTT----TTAATTA
1 AATTAAATTAGGTTAGGGTTTAGGGTT--TTT
58372083 AATTAAATTAGGTTAGGGTTTAGGGTTTTTAATT
1 AATTAAATTAGGTTAGGGTTTAGGG--TTT--TT
58372117 AAATTAAATTAGGTTAGGG-TTAGGGGTTTTAATT
1 -AATTAAATTAGGTTAGGGTTTA-GGG-TTT--TT
58372151 AAATTAAATTAGGTTAGGG-TTAGGGTTTTTAATT
1 -AATTAAATTAGGTTAGGGTTTAGGG--TTT--TT
58372185 AAATTAAATTAGGTTAGGG-TTAGGGTTTTTAATT
1 -AATTAAATTAGGTTAGGGTTTAGGG--TTT--TT
58372219 AAATTAAATTAGGTTAGGG-TTAGGGTTTTT
1 -AATTAAATTAGGTTAGGGTTTAGGGTTTTT
** *
58372249 AATTAAATTAAATTA-GG-TTAGGATTTTT
1 AATTAAATTAGGTTAGGGTTTAGGGTTTTT
58372277 AATTAAAT
1 AATTAAAT
58372285 CAAATAATAT
Statistics
Matches: 630, Mismatches: 25, Indels: 85
0.85 0.03 0.11
Matches are distributed among these distances:
26 10 0.02
28 132 0.21
29 179 0.28
30 170 0.27
32 12 0.02
33 3 0.00
34 103 0.16
35 21 0.03
ACGTcount: A:0.31, C:0.00, G:0.23, T:0.46
Consensus pattern (30 bp):
AATTAAATTAGGTTAGGGTTTAGGGTTTTT
Found at i:58371634 original size:23 final size:23
Alignment explanation
Indices: 58371634--58371708 Score: 96
Period size: 23 Copynumber: 3.0 Consensus size: 23
58371624 ATTAGGTTAG
58371634 GGTTAGGGTTTTTAATTAAATTAGGTTA
1 GGTTAGGGTTTTTAATT-AA--A--TTA
58371662 GGGTTAGGGTTTTTAATTAAATTA
1 -GGTTAGGGTTTTTAATTAAATTA
58371686 GGTTAGGGTTTTTAATTAAATTA
1 GGTTAGGGTTTTTAATTAAATTA
58371709 AATTAGGTTA
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
23 23 0.50
24 3 0.07
26 1 0.02
28 2 0.04
29 17 0.37
ACGTcount: A:0.29, C:0.00, G:0.24, T:0.47
Consensus pattern (23 bp):
GGTTAGGGTTTTTAATTAAATTA
Found at i:58371714 original size:23 final size:23
Alignment explanation
Indices: 58371665--58371715 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
58371655 TAGGTTAGGG
**
58371665 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAAA
58371688 TTAGGGTTTTTAATTAAATTAAA
1 TTAGGGTTTTTAATTAAATTAAA
58371711 TTAGG
1 TTAGG
58371716 TTAGGATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (23 bp):
TTAGGGTTTTTAATTAAATTAAA
Found at i:58372035 original size:23 final size:23
Alignment explanation
Indices: 58371986--58372036 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
58371976 TAGGTTAGGG
**
58371986 TTAGGGTTTTTAATTAAATTAGG
1 TTAGGGTTTTTAATTAAATTAAA
58372009 TTAGGGTTTTTAATTAAATTAAA
1 TTAGGGTTTTTAATTAAATTAAA
58372032 TTAGG
1 TTAGG
58372037 TTAGGGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (23 bp):
TTAGGGTTTTTAATTAAATTAAA
Found at i:58372072 original size:23 final size:23
Alignment explanation
Indices: 58372042--58372087 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
58372032 TTAGGTTAGG
58372042 GTTTAGGGTTTTTAATTAAATTA
1 GTTTAGGGTTTTTAATTAAATTA
58372065 GTTTAGGGTTTTTAATTAAATTA
1 GTTTAGGGTTTTTAATTAAATTA
58372088 AATTAGGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (23 bp):
GTTTAGGGTTTTTAATTAAATTA
Found at i:58372093 original size:23 final size:23
Alignment explanation
Indices: 58372044--58372094 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
58372034 AGGTTAGGGT
**
58372044 TTAGGGTTTTTAATTAAATTAGT
1 TTAGGGTTTTTAATTAAATTAAA
58372067 TTAGGGTTTTTAATTAAATTAAA
1 TTAGGGTTTTTAATTAAATTAAA
58372090 TTAGG
1 TTAGG
58372095 TTAGGGTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.33, C:0.00, G:0.18, T:0.49
Consensus pattern (23 bp):
TTAGGGTTTTTAATTAAATTAAA
Found at i:58372187 original size:68 final size:68
Alignment explanation
Indices: 58372067--58372270 Score: 390
Period size: 68 Copynumber: 3.0 Consensus size: 68
58372057 TTAAATTAGT
58372067 TTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTTAGGGTTTTTAATTAAATTAAATTAGGTT
1 TTAGGGTTTTTAATTAAATTAAATTAGGTTAGGG-TTAGGGTTTTTAATTAAATTAAATTAGGTT
58372132 AGGG
65 AGGG
*
58372136 TTAGGGGTTTTAATTAAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGTTA
1 TTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGTTA
58372201 GGG
66 GGG
58372204 TTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGTTA
1 TTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGTTA
58372269 GG
66 GG
58372271 ATTTTTAATT
Statistics
Matches: 133, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
68 100 0.75
69 33 0.25
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (68 bp):
TTAGGGTTTTTAATTAAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTAGGTTA
GGG
Found at i:58374442 original size:14 final size:15
Alignment explanation
Indices: 58374425--58374458 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
58374415 AATATTTATT
58374425 TAAAAATA-CGTAAA
1 TAAAAATATCGTAAA
*
58374439 TAAAAATATCTTAAA
1 TAAAAATATCGTAAA
58374454 TAAAA
1 TAAAA
58374459 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.65, C:0.06, G:0.03, T:0.26
Consensus pattern (15 bp):
TAAAAATATCGTAAA
Found at i:58374599 original size:30 final size:29
Alignment explanation
Indices: 58374556--58374612 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 29
58374546 TTGAAAATAT
58374556 TAAAAATTTTAAAATTATT-TTAAAAAAAA
1 TAAAAATTTTAAAATT-TTCTTAAAAAAAA
58374585 TAAAAATATTTAAAATTTTCTTAAAAAA
1 TAAAAAT-TTTAAAATTTTCTTAAAAAA
58374613 TGAAATTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.39
Consensus pattern (29 bp):
TAAAAATTTTAAAATTTTCTTAAAAAAAA
Found at i:58374672 original size:22 final size:21
Alignment explanation
Indices: 58374647--58374697 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 21
58374637 TAATATGGAG
*
58374647 TTGAGAGATTTTTTGAAGGAAA
1 TTGAGAGA-TTTTGGAAGGAAA
*
58374669 TTGAGAGGATTTTGGAAGGAAT
1 TTGAGA-GATTTTGGAAGGAAA
58374691 TTGAGAG
1 TTGAGAG
58374698 TTTAAGAGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 1 0.04
22 23 0.88
23 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (21 bp):
TTGAGAGATTTTGGAAGGAAA
Found at i:58374725 original size:52 final size:52
Alignment explanation
Indices: 58374650--58374749 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
58374640 TATGGAGTTG
* * *
58374650 AGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAAGGAATTTGAGAGTTTA
1 AGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAATTTGAGAGTTTA
* *
58374702 AGAGAATTTTGGAAGGAATTTGAGAGAATTTTTGAAGGAATTTGAGAG
1 AGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAATTTGAGAG
58374750 AATTTTTGAA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 43 1.00
ACGTcount: A:0.36, C:0.00, G:0.31, T:0.33
Consensus pattern (52 bp):
AGAGAATTTTGGAAGGAAATTGAGAGAATTTTGGAAGGAATTTGAGAGTTTA
Found at i:58374727 original size:22 final size:22
Alignment explanation
Indices: 58374702--58374770 Score: 111
Period size: 22 Copynumber: 3.1 Consensus size: 22
58374692 TGAGAGTTTA
*
58374702 AGAGAATTTTGGAAGGAATTTG
1 AGAGAATTTTTGAAGGAATTTG
58374724 AGAGAATTTTTGAAGGAATTTG
1 AGAGAATTTTTGAAGGAATTTG
* *
58374746 AGAGAATTTTTGAATGAAATTG
1 AGAGAATTTTTGAAGGAATTTG
58374768 AGA
1 AGA
58374771 TAGGATTTGT
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.39, C:0.00, G:0.28, T:0.33
Consensus pattern (22 bp):
AGAGAATTTTTGAAGGAATTTG
Found at i:58375020 original size:28 final size:29
Alignment explanation
Indices: 58374969--58375023 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
58374959 CGGGGAAAAT
*
58374969 GGCCCATTCCGGTAAATAATTAAAAAACC
1 GGCCCATTCCGATAAATAATTAAAAAACC
* *
58374998 GGCCCATTTCGATAAAT-TTTAAAAAA
1 GGCCCATTCCGATAAATAATTAAAAAA
58375024 AGGGCTTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 8 0.35
29 15 0.65
ACGTcount: A:0.42, C:0.20, G:0.13, T:0.25
Consensus pattern (29 bp):
GGCCCATTCCGATAAATAATTAAAAAACC
Found at i:58375523 original size:30 final size:28
Alignment explanation
Indices: 58375486--58375566 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 28
58375476 TTTTAAAATT
58375486 AAATAAAAATAATTTTAAAAAATTATAA
1 AAATAAAAATAATTTTAAAAAATTATAA
* *
58375514 ATATATAAAAGT-ATTATT-AAAATTTATAA
1 A-A-ATAAAAATAATT-TTAAAAAATTATAA
**
58375543 AAATAATAAATAAAGTTAAAAAAT
1 AAATAA-AAATAATTTTAAAAAAT
58375567 ATTCAAAATT
Statistics
Matches: 41, Mismatches: 6, Indels: 11
0.71 0.10 0.19
Matches are distributed among these distances:
27 4 0.10
28 7 0.17
29 21 0.51
30 9 0.22
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
AAATAAAAATAATTTTAAAAAATTATAA
Found at i:58388184 original size:5 final size:5
Alignment explanation
Indices: 58388174--58388207 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
58388164 ATAACTTAAG
58388174 AATAT AATAT AATAT AATAT AATAT AAT-T AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT
58388208 TTTAATTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
AATAT
Found at i:58397029 original size:44 final size:44
Alignment explanation
Indices: 58396980--58397083 Score: 147
Period size: 44 Copynumber: 2.4 Consensus size: 44
58396970 TGGCTTTCTA
*
58396980 ATTCTCGAATCTGTGTTTCTCATCATTTCCTTTTTTGCTTCCAT
1 ATTCTCGAATCTGTGTTTCTCATCATTTCCTTTTTTGCTTACAT
* * **
58397024 ATTCTCAAATCTGTGTTTGTGGTCATTTCCTTTTTTGCTTACAT
1 ATTCTCGAATCTGTGTTTCTCATCATTTCCTTTTTTGCTTACAT
58397068 ATTCT-GAAATCTGTGT
1 ATTCTCG-AATCTGTGT
58397084 CTGTGATCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
44 53 1.00
ACGTcount: A:0.16, C:0.20, G:0.12, T:0.51
Consensus pattern (44 bp):
ATTCTCGAATCTGTGTTTCTCATCATTTCCTTTTTTGCTTACAT
Found at i:58397988 original size:51 final size:51
Alignment explanation
Indices: 58397924--58398027 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
58397914 TATTCGAGTC
*
58397924 AATTTGAGTTTATCCGAATAACTTAATTAACTCAAATAACTCGAACTAGTT
1 AATTCGAGTTTATCCGAATAACTTAATTAACTCAAATAACTCGAACTAGTT
*
58397975 AATTCGAGTTTATCCGAATAACTTAATTAACTCAAATAACTTGAACTAGTT
1 AATTCGAGTTTATCCGAATAACTTAATTAACTCAAATAACTCGAACTAGTT
58398026 AA
1 AA
58398028 ATCAAAATTT
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.40, C:0.15, G:0.10, T:0.35
Consensus pattern (51 bp):
AATTCGAGTTTATCCGAATAACTTAATTAACTCAAATAACTCGAACTAGTT
Found at i:58398276 original size:48 final size:45
Alignment explanation
Indices: 58398224--58398329 Score: 117
Period size: 44 Copynumber: 2.3 Consensus size: 45
58398214 TGGCTTTCTA
* *
58398224 ATTCTCAAATTAACCTGTGTTTCTCATCATTTCCTTTTTTGCTTCCAT
1 ATTCTCAAATT---CTGTGTCTCTCACCATTTCCTTTTTTGCTTCCAT
* **
58398272 ATTCTCAAA-TCTGTGTCTGTGGCCATTTCCTTTTTTGCTTCCAT
1 ATTCTCAAATTCTGTGTCTCTCACCATTTCCTTTTTTGCTTCCAT
*
58398316 ATTCTGAAA-TCTGT
1 ATTCTCAAATTCTGT
58398330 ATGTGATCAT
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
44 42 0.81
47 1 0.02
48 9 0.17
ACGTcount: A:0.18, C:0.24, G:0.10, T:0.48
Consensus pattern (45 bp):
ATTCTCAAATTCTGTGTCTCTCACCATTTCCTTTTTTGCTTCCAT
Found at i:58404354 original size:18 final size:18
Alignment explanation
Indices: 58404331--58404433 Score: 134
Period size: 18 Copynumber: 5.7 Consensus size: 18
58404321 ACTACTGTAC
*
58404331 ACGTGAACAGTACCGTAT
1 ACGTGAATAGTACCGTAT
** *
58404349 ACGTGAATAGTGTCATAT
1 ACGTGAATAGTACCGTAT
*
58404367 ACGTGAATAGTGCCGTAT
1 ACGTGAATAGTACCGTAT
*
58404385 ACGTGAATAGTACCATAT
1 ACGTGAATAGTACCGTAT
* *
58404403 ATGTGAATAGTGCCGTAT
1 ACGTGAATAGTACCGTAT
58404421 ACGTGAATAGTAC
1 ACGTGAATAGTAC
58404434 TGTAAACGGT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 72 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (18 bp):
ACGTGAATAGTACCGTAT
Found at i:58404383 original size:36 final size:36
Alignment explanation
Indices: 58404331--58404433 Score: 161
Period size: 36 Copynumber: 2.9 Consensus size: 36
58404321 ACTACTGTAC
* * **
58404331 ACGTGAACAGTACCGTATACGTGAATAGTGTCATAT
1 ACGTGAATAGTGCCGTATACGTGAATAGTACCATAT
58404367 ACGTGAATAGTGCCGTATACGTGAATAGTACCATAT
1 ACGTGAATAGTGCCGTATACGTGAATAGTACCATAT
*
58404403 ATGTGAATAGTGCCGTATACGTGAATAGTAC
1 ACGTGAATAGTGCCGTATACGTGAATAGTAC
58404434 TGTAAACGGT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 62 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (36 bp):
ACGTGAATAGTGCCGTATACGTGAATAGTACCATAT
Found at i:58407553 original size:26 final size:24
Alignment explanation
Indices: 58407541--58407587 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
58407531 TTTAGTTTTA
58407541 TAAATTTTTTATATTTTTTGAATT
1 TAAATTTTTTATATTTTTTGAATT
*
58407565 TCAATTTTTTATATTTTTTGAAT
1 TAAATTTTTTATATTTTTTGAAT
58407588 ACTTTTATAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (24 bp):
TAAATTTTTTATATTTTTTGAATT
Found at i:58412004 original size:21 final size:21
Alignment explanation
Indices: 58411978--58412018 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
58411968 AGACGAGCAA
* *
58411978 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
58411999 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
58412019 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:58421337 original size:43 final size:43
Alignment explanation
Indices: 58421236--58421476 Score: 259
Period size: 43 Copynumber: 5.6 Consensus size: 43
58421226 TTTTAGAAAT
* * * * *
58421236 AAACGCCGCTATAGAACAAGACCTTTAGCGACGC-TTTCCCAA
1 AAACGCCACTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCAC
* * * * *
58421278 AAACGTCGCTATAGAACATGAGCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCACTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCAC
* * * * *
58421321 AAACGCCGCTAAAGAACAAGACCTTTAGCAGCACCTTTTCTAC
1 AAACGCCACTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCAC
* *
58421364 TAACGCCACTAAAGAGCAAGACCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCACTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCAC
* * * ** *
58421407 AAACGCCACTATAGAACATGACCTTTTGCAACGCTTTTCCCAC
1 AAACGCCACTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCAC
*
58421450 AAACGCCACTAAAGAACATGACCTTTA
1 AAACGCCACTAAAGAACAAGACCTTTA
58421477 AAAAATATTT
Statistics
Matches: 167, Mismatches: 31, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
42 30 0.18
43 137 0.82
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (43 bp):
AAACGCCACTAAAGAACAAGACCTTTAGCGGCGCTTTTTCCAC
Found at i:58421413 original size:86 final size:86
Alignment explanation
Indices: 58421236--58421476 Score: 317
Period size: 86 Copynumber: 2.8 Consensus size: 86
58421226 TTTTAGAAAT
* * * * * *
58421236 AAACGCCGCTATAGAACAAGACCTTTAGC-GACGCTTTCCCAAAAACGTCGCTATAGAACATGAG
1 AAACGCCGCTATAGAACAAGACCTTTAGCAGACGCTTTTCCACAAACGCCACTAAAGAACATGAC
58421300 CTTTAGCGGCGCTTTTTCCAC
66 CTTTAGCGGCGCTTTTTCCAC
* * * * *
58421321 AAACGCCGCTAAAGAACAAGACCTTTAGCAGCAC-CTTTTCTACTAACGCCACTAAAGAGCAAGA
1 AAACGCCGCTATAGAACAAGACCTTTAGCAG-ACGCTTTTCCACAAACGCCACTAAAGAACATGA
58421385 CCTTTAGCGGCGCTTTTTCCAC
65 CCTTTAGCGGCGCTTTTTCCAC
* * *
58421407 AAACGCCACTATAGAACATGACCTTTTGCA-ACGCTTTTCCCACAAACGCCACTAAAGAACATGA
1 AAACGCCGCTATAGAACAAGACCTTTAGCAGACGCTTTT-CCACAAACGCCACTAAAGAACATGA
58421471 CCTTTA
65 CCTTTA
58421477 AAAAATATTT
Statistics
Matches: 133, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
84 2 0.02
85 33 0.25
86 96 0.72
87 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (86 bp):
AAACGCCGCTATAGAACAAGACCTTTAGCAGACGCTTTTCCACAAACGCCACTAAAGAACATGAC
CTTTAGCGGCGCTTTTTCCAC
Found at i:58421466 original size:129 final size:128
Alignment explanation
Indices: 58421237--58421476 Score: 336
Period size: 129 Copynumber: 1.9 Consensus size: 128
58421227 TTTAGAAATA
* * * * *
58421237 AACGCCGCTATAGAACAAGACCTTTAGCGACGCTTTCCCAAAAACGTCGCTATAGAACATGAGCT
1 AACGCCACTAAAGAACAAGACCTTTAGCGACGCTTTCCCAAAAACGCCACTATAGAACATGACCT
** * *
58421302 TTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGAACAAGACCTTTAGCAGCACCTTTTCTACT
66 TTAGCAACGCTTTTCCCACAAACGCCACTAAAGAACAAGACCTTTAGCAGCACCTTTTCTACT
* * * *
58421365 AACGCCACTAAAGAGCAAGACCTTTAGCGGCGCTTTTTCCACAAACGCCACTATAGAACATGACC
1 AACGCCACTAAAGAACAAGACCTTTAGCGACGC-TTTCCCAAAAACGCCACTATAGAACATGACC
* *
58421430 TTTTGCAACGCTTTTCCCACAAACGCCACTAAAGAACATGACCTTTA
65 TTTAGCAACGCTTTTCCCACAAACGCCACTAAAGAACAAGACCTTTA
58421477 AAAAATATTT
Statistics
Matches: 96, Mismatches: 15, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
128 29 0.30
129 67 0.70
ACGTcount: A:0.32, C:0.30, G:0.16, T:0.23
Consensus pattern (128 bp):
AACGCCACTAAAGAACAAGACCTTTAGCGACGCTTTCCCAAAAACGCCACTATAGAACATGACCT
TTAGCAACGCTTTTCCCACAAACGCCACTAAAGAACAAGACCTTTAGCAGCACCTTTTCTACT
Found at i:58424365 original size:57 final size:57
Alignment explanation
Indices: 58424252--58424365 Score: 158
Period size: 57 Copynumber: 2.0 Consensus size: 57
58424242 CTCCACTCCA
* * **
58424252 ACATTTACAGTTTCACCTCCATTTATTTGAATAGAAGCAGAGCTCTTATTGTGCTGC
1 ACATTTAAAGTTTCACCTCCATTTATTTGAACAGAAGCAGAGCTCTTATTCAGCTGC
* *
58424309 ACATTTAAAGTTTCACCTCCATTTATTTGAACAGAAGACAG-GCTTTTCTTCAGCTGC
1 ACATTTAAAGTTTCACCTCCATTTATTTGAACAGAAG-CAGAGCTCTTATTCAGCTGC
58424366 TCGTCAACGA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 47 0.94
58 3 0.06
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (57 bp):
ACATTTAAAGTTTCACCTCCATTTATTTGAACAGAAGCAGAGCTCTTATTCAGCTGC
Found at i:58425220 original size:149 final size:149
Alignment explanation
Indices: 58424863--58425821 Score: 1358
Period size: 149 Copynumber: 6.4 Consensus size: 149
58424853 CTGTCAATTA
* * * * *
58424863 TCATAAAAACGCCACAAAAAAATTTTCATTTTGAATAAAACTACGCCGTTTTGCTAAGCTATGCT
1 TCATAAAAACGCCGCAAAAAAA-TTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCT
* * *
58424928 AAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTGTAAAAACGCCGCTATTC
65 AAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCAATTG
58424993 CTTACCTTTAGCGGCGTTTT
130 CTTACCTTTAGCGGCGTTTT
**
58425013 T-ATGCAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCTA
1 TCATAAAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCTA
*
58425077 AAAGGGGGCTATTTTTTTAAAGTACAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCAATTGC
66 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCAATTGC
58425142 TTACCTTTAGCGGCGTTTT
131 TTACCTTTAGCGGCGTTTT
*
58425161 TCATAAAAACGTCGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCTA
1 TCATAAAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCTA
* * *
58425226 AAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTTC
66 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCAATTGC
58425291 TTACCTTTAGCGGCGTTTT
131 TTACCTTTAGCGGCGTTTT
*** * *
58425310 T-ACGCAAACGCCGC-AAAAAATTTTATTTTTAACAAAACTACGCCGTTTTGCTATGCCATTCTA
1 TCATAAAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCTA
58425373 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCAATTGC
66 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCAATTGC
*
58425438 TTACCTTTAGCGGCATTTT
131 TTACCTTTAGCGGCGTTTT
* *
58425457 TCATAAAAACGCTGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCTATGCTA
1 TCATAAAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCTA
*
58425522 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGC-ATTTTTATAAAAACGCCGCAATTGC
66 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCAATTGC
58425586 TTACCTTTAGCGGCGTTTT
131 TTACCTTTAGCGGCGTTTT
* * * *
58425605 T-ATGAAAAACACCGCAAAAAAAATTTCATTTTGAATAAAACTACGCCGTTTTGCTATGCTATGC
1 TCAT-AAAAACGCCGC-AAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGC
** * *
58425669 TAAAAGGGGGCTATTTTGTTTTTTA-TAAATTGATTTATTTTTTGCGGCCTTTTTT-TAGAAAAC
64 TAAAAGGGGGCTA-TTT-TTTTAAAGTAAA---A-TTA--TTTTGTGGCGTTTTTTATA-AAAAC
* * * * *
58425732 GCCGCTATTGCTTATCTTTTGCAGCATTTT
120 GCCGCAATTGCTTACCTTTAGCGGCGTTTT
* * * *
58425762 CCATTAAAACGCCGCAAAATATTATTTCATTTTGAACAAAA-TGACGCCGTTTTGCTATGC
1 TCATAAAAACGCCGCAAAA-A-AATTTCATTTTTAACAAAACT-ACGCCGTTTTGCTATGC
58425822 TAAAAAATTT
Statistics
Matches: 735, Mismatches: 55, Indels: 30
0.90 0.07 0.04
Matches are distributed among these distances:
147 130 0.18
148 190 0.26
149 302 0.41
150 8 0.01
151 5 0.01
153 1 0.00
154 3 0.00
156 14 0.02
157 46 0.06
158 36 0.05
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (149 bp):
TCATAAAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCTA
AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCAATTGC
TTACCTTTAGCGGCGTTTT
Found at i:58425459 original size:296 final size:297
Alignment explanation
Indices: 58424863--58425823 Score: 1437
Period size: 296 Copynumber: 3.2 Consensus size: 297
58424853 CTGTCAATTA
* * *
58424863 TCATAAAAACGCCACAAAAAAATTTTCATTTTGAATAAAACTACGCCGTTTTGCTAAGCTATGCT
1 TCATAAAAACGCCGCAAAAAAA-TTTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCT
*
58424928 AAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTGTAAAAACGCCGCTATTC
65 AAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTC
58424993 CTTACCTTTAGCGGCGTTTTTATGCAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCC
130 CTTACCTTTAGCGGCGTTTTTATGCAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCC
*
58425058 GTTTTGCTATGCCATGCTAAAAGGGGGCTATTTTTTTAAAGTACAATTATTTTGTGGCGTTTTTT
195 GTTTTGCTATGCCATGCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTT
*
58425123 ATAAAAACGCCGCAATTGCTTACCTTTAGCGGCGTTTT
260 ATAAAAACGCCGCAATTGCTTACCTTTAGCGGCATTTT
* * *
58425161 TCATAAAAACGTCGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCCATGCTA
1 TCATAAAAACGCCGCAAAAAAATTTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTA
* *
58425226 AAAGGGGGCTATTTTTTAAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTTC
66 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTCC
* *
58425291 TTACCTTTAGCGGCGTTTTTACGCAAACGCCGC-AAAAAATTTTATTTTTAACAAAACTACGCCG
131 TTACCTTTAGCGGCGTTTTTATGCAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCCG
*
58425355 TTTTGCTATGCCATTCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTA
196 TTTTGCTATGCCATGCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTA
58425420 TAAAAACGCCGCAATTGCTTACCTTTAGCGGCATTTT
261 TAAAAACGCCGCAATTGCTTACCTTTAGCGGCATTTT
* *
58425457 TCATAAAAACGCTGCAAAAAAATTTCATTTTTAACAAAACTACGCCGTTTTGCTATGCTATGCTA
1 TCATAAAAACGCCGCAAAAAAATTTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTA
* * *
58425522 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGC-ATTTTTATAAAAACGCCGCAATTGC
66 AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTCC
* * * *
58425586 TTACCTTTAGCGGCGTTTTTATGAAAAACACCGCAAAAAAAATTTCATTTTGAATAAAACTACGC
131 TTACCTTTAGCGGCGTTTTTATG-CAAACGCCGC-AAAAAAATTTCATTTTTAACAAAACTACGC
* ** *
58425651 CGTTTTGCTATGCTATGCTAAAAGGGGGCTATTTTGTTTTTTA-TAAATTGATTTATTTTTTGCG
194 CGTTTTGCTATGCCATGCTAAAAGGGGGCTA-TTT-TTTTAAAGTAAA---A-TTA--TTTTGTG
* * * * *
58425715 GCCTTTTTT-TAGAAAACGCCGCTATTGCTTATCTTTTGCAGCATTTT
251 GCGTTTTTTATA-AAAACGCCGCAATTGCTTACCTTTAGCGGCATTTT
* * *
58425762 CCATTAAAACGCCGCAAAATATTATTTCATTTTGAACAAAA-TGACGCCGTTTTGCTATGCTA
1 TCATAAAAACGCCGCAAAA-A-AATTTCATTTTGAACAAAACT-ACGCCGTTTTGCTATGCTA
58425824 AAAAATTTTT
Statistics
Matches: 606, Mismatches: 42, Indels: 21
0.91 0.06 0.03
Matches are distributed among these distances:
295 44 0.07
296 237 0.39
297 133 0.22
298 75 0.12
299 7 0.01
300 5 0.01
302 1 0.00
303 3 0.00
304 2 0.00
305 61 0.10
306 2 0.00
307 36 0.06
ACGTcount: A:0.30, C:0.17, G:0.16, T:0.37
Consensus pattern (297 bp):
TCATAAAAACGCCGCAAAAAAATTTCATTTTGAACAAAACTACGCCGTTTTGCTATGCTATGCTA
AAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTATAAAAACGCCGCTATTCC
TTACCTTTAGCGGCGTTTTTATGCAAACGCCGCAAAAAAATTTCATTTTTAACAAAACTACGCCG
TTTTGCTATGCCATGCTAAAAGGGGGCTATTTTTTTAAAGTAAAATTATTTTGTGGCGTTTTTTA
TAAAAACGCCGCAATTGCTTACCTTTAGCGGCATTTT
Found at i:58425856 original size:15 final size:15
Alignment explanation
Indices: 58425836--58425864 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
58425826 AAATTTTTAT
58425836 TTTATTTTTTATAAA
1 TTTATTTTTTATAAA
58425851 TTTATTTTTTATAA
1 TTTATTTTTTATAA
58425865 TAAAAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTATTTTTTATAAA
Found at i:58426446 original size:7 final size:7
Alignment explanation
Indices: 58426426--58426530 Score: 93
Period size: 7 Copynumber: 14.9 Consensus size: 7
58426416 AACCTTAAAT
58426426 CCCTAAC
1 CCCTAAC
* *
58426433 TCTTAAC
1 CCCTAAC
58426440 CCCTAAC
1 CCCTAAC
**
58426447 ATCTAAC
1 CCCTAAC
58426454 CCCTAAC
1 CCCTAAC
*
58426461 CCCTAAA
1 CCCTAAC
* *
58426468 CCTTAAAT
1 CCCT-AAC
*
58426476 CACTAAC
1 CCCTAAC
* *
58426483 TCTTAAC
1 CCCTAAC
58426490 CCCTAAC
1 CCCTAAC
**
58426497 ATCTAAC
1 CCCTAAC
58426504 CCCTAAC
1 CCCTAAC
58426511 CCCTAAC
1 CCCTAAC
58426518 CCCTAAC
1 CCCTAAC
58426525 CCCTAA
1 CCCTAA
58426531 ACCTTAAATC
Statistics
Matches: 74, Mismatches: 23, Indels: 2
0.75 0.23 0.02
Matches are distributed among these distances:
7 70 0.95
8 4 0.05
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.22
Consensus pattern (7 bp):
CCCTAAC
Found at i:58426466 original size:50 final size:50
Alignment explanation
Indices: 58426401--58426516 Score: 205
Period size: 50 Copynumber: 2.3 Consensus size: 50
58426391 CCTTAACTCG
* *
58426401 ACCCCTGAATCCCTAAACCTTAAATCCCTAACTCTTAACCCCTAACATCTA
1 ACCCCT-AACCCCTAAACCTTAAATCACTAACTCTTAACCCCTAACATCTA
58426452 ACCCCTAACCCCTAAACCTTAAATCACTAACTCTTAACCCCTAACATCTA
1 ACCCCTAACCCCTAAACCTTAAATCACTAACTCTTAACCCCTAACATCTA
58426502 ACCCCTAACCCCTAA
1 ACCCCTAACCCCTAA
58426517 CCCCTAACCC
Statistics
Matches: 63, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
50 57 0.90
51 6 0.10
ACGTcount: A:0.34, C:0.41, G:0.01, T:0.23
Consensus pattern (50 bp):
ACCCCTAACCCCTAAACCTTAAATCACTAACTCTTAACCCCTAACATCTA
Found at i:58426816 original size:7 final size:7
Alignment explanation
Indices: 58426796--58426864 Score: 59
Period size: 7 Copynumber: 9.6 Consensus size: 7
58426786 CCTAGCACAT
58426796 CTAACCC
1 CTAACCC
58426803 CTAAACCC
1 CT-AACCC
58426811 CTAACCC
1 CTAACCC
58426818 TCTAACCC
1 -CTAACCC
58426826 CTAACCC
1 CTAACCC
* *
58426833 TTAAATCC
1 CT-AACCC
58426841 C-AACCC
1 CTAACCC
*
58426847 CTAATCC
1 CTAACCC
* *
58426854 ATAATCC
1 CTAACCC
58426861 CTAA
1 CTAA
58426865 ACCCATACTC
Statistics
Matches: 51, Mismatches: 7, Indels: 8
0.77 0.11 0.12
Matches are distributed among these distances:
6 5 0.10
7 28 0.55
8 18 0.35
ACGTcount: A:0.33, C:0.46, G:0.00, T:0.20
Consensus pattern (7 bp):
CTAACCC
Found at i:58426816 original size:15 final size:15
Alignment explanation
Indices: 58426796--58426882 Score: 74
Period size: 15 Copynumber: 5.9 Consensus size: 15
58426786 CCTAGCACAT
58426796 CTAACCCCTAAACCC
1 CTAACCCCTAAACCC
58426811 CTAACCCTCT-AACCC
1 CTAACCC-CTAAACCC
* *
58426826 CTAACCCTTAAATCC
1 CTAACCCCTAAACCC
*
58426841 C-AACCCCT-AATCC
1 CTAACCCCTAAACCC
* *
58426854 ATAATCCCTAAACCC
1 CTAACCCCTAAACCC
*
58426869 AT-ACTCCCTAAACC
1 CTAAC-CCCTAAACC
58426883 GGCCTTAAAT
Statistics
Matches: 60, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
13 5 0.08
14 14 0.23
15 39 0.65
16 2 0.03
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (15 bp):
CTAACCCCTAAACCC
Found at i:58427183 original size:73 final size:73
Alignment explanation
Indices: 58427032--58427257 Score: 323
Period size: 73 Copynumber: 3.1 Consensus size: 73
58427022 TATTTTTTTT
* * *
58427032 GCCGCTAAATCCCCGAAAGCTCACAAAACAGCGTCATTTGGCTTA--TTTTTTTGCGGCACTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTGGCTTATGTTTTTTTGCGGCGCTTTC
*
58427095 TTAAAAAT
66 TTAAAAAC
* * *
58427103 GCCGCTAAATACCCAAAAGCTCACAAAACGGCGTGGTTTGGCTTATGTTTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTGGCTTATGTTTTTTTGCGGCGCTTTC
58427168 TTAAAAAC
66 TTAAAAAC
* * *
58427176 GCCGCTAAATCCCCGAAAGCCCACAAAACGACGTCGTTGGGCTTATGTTTTTTTGCGGCGC-TTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTGGCTTATGTTTTTTTGCGGCGCTTTC
*
58427240 TTCCAAAAC
66 TT-AAAAAC
58427249 GCCGCTAAA
1 GCCGCTAAA
58427258 GCCCTGACCA
Statistics
Matches: 138, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
71 40 0.29
72 5 0.04
73 93 0.67
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (73 bp):
GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTTGGCTTATGTTTTTTTGCGGCGCTTTC
TTAAAAAC
Found at i:58427410 original size:113 final size:113
Alignment explanation
Indices: 58427157--58427482 Score: 483
Period size: 113 Copynumber: 2.9 Consensus size: 113
58427147 ATGTTTTTTT
* *
58427157 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCCCACAAAACGACGTCGTTGGGCTTAT
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCCCACAAAACGGCGTCGTTGGGCTTAT
* *
58427222 GTTTTTTTGCGGCGCTTCTTCCAAAACGCCGCTAAAGCCCTGACCATTA
66 G-TTTTTTGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCTGACCATTA
* *
58427271 GCGGCGCTTTCTTAAAAACGCTGCTAAATCCCCAAAAGCCCACAAAACGGTGTCGTTGGGCTTAT
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCCCACAAAACGGCGTCGTTGGGCTTAT
*
58427336 GTTTTTTGCGGCGCTTCCTCAAAAATGCCGCTAAAGCCCTGACCATTA
66 GTTTTTTGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCTGACCATTA
* * *
58427384 GCGGCGC-TTCATTAAAAACGCCGCTAAATCCCCAAAAGCTCAAAAAATGGCGTCGTTGGGCTTA
1 GCGGCGCTTTC-TTAAAAACGCCGCTAAATCCCCAAAAGCCCACAAAACGGCGTCGTTGGGCTTA
* * * * **
58427448 GGTTGTTTGTGGCGCTTTTTGGAAAATGCCGCTAA
65 TGTTTTTTGCGGCGCTTCTTCAAAAATGCCGCTAA
58427483 TGCTTATTTT
Statistics
Matches: 192, Mismatches: 19, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
112 3 0.02
113 127 0.66
114 62 0.32
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (113 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAAAAGCCCACAAAACGGCGTCGTTGGGCTTAT
GTTTTTTGCGGCGCTTCTTCAAAAATGCCGCTAAAGCCCTGACCATTA
Found at i:58428541 original size:101 final size:101
Alignment explanation
Indices: 58428366--58428567 Score: 386
Period size: 101 Copynumber: 2.0 Consensus size: 101
58428356 TAACTAAGTG
*
58428366 TCAGTTGCTGACTCAGTCTCGAACAACTAATTTCTTATCCTATTTGATATCCAAGAGGCAACTCA
1 TCAGTTGCTGACTCAGTCTCGAACAACTAATTTCTTATCCTATTCGATATCCAAGAGGCAACTCA
58428431 TTTGAAATTACTTCTCTAACTGATAAATAATCTTGT
66 TTTGAAATTACTTCTCTAACTGATAAATAATCTTGT
*
58428467 TCAGTTGCTGACTCAGTCTCGAACAACTAATTTCTTATCCTATTCGATATCCAAGAGGCAGCTCA
1 TCAGTTGCTGACTCAGTCTCGAACAACTAATTTCTTATCCTATTCGATATCCAAGAGGCAACTCA
58428532 TTTGAAATTACTTCTCTAACTGATAAATAATCTTGT
66 TTTGAAATTACTTCTCTAACTGATAAATAATCTTGT
58428568 AACTCAACGC
Statistics
Matches: 99, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
101 99 1.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.36
Consensus pattern (101 bp):
TCAGTTGCTGACTCAGTCTCGAACAACTAATTTCTTATCCTATTCGATATCCAAGAGGCAACTCA
TTTGAAATTACTTCTCTAACTGATAAATAATCTTGT
Found at i:58429704 original size:35 final size:37
Alignment explanation
Indices: 58429632--58429704 Score: 87
Period size: 37 Copynumber: 2.0 Consensus size: 37
58429622 TAATTATATA
** **
58429632 TTTTTGAAAATTTTAATTAAACTCTCTTAAATTATTT
1 TTTTTGAAAATTTTAATTAAACTCTCACAAAAAATTT
*
58429669 TTTTTGAAAATTTTCATT-AA-TCTCACAAAAAATTT
1 TTTTTGAAAATTTTAATTAAACTCTCACAAAAAATTT
58429704 T
1 T
58429705 AAAATTTTAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
35 12 0.39
36 2 0.06
37 17 0.55
ACGTcount: A:0.37, C:0.10, G:0.03, T:0.51
Consensus pattern (37 bp):
TTTTTGAAAATTTTAATTAAACTCTCACAAAAAATTT
Found at i:58431965 original size:50 final size:50
Alignment explanation
Indices: 58431850--58432098 Score: 282
Period size: 50 Copynumber: 4.8 Consensus size: 50
58431840 GATAATAACA
* * ** * *
58431850 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGA-CCTCTCATCTCGG
* *
58431901 TGCCCATGCCATGTCCCAGACATGGTCTTATAGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * * *
58431951 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCGTCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
* * *
58432001 TGCCCATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTTATGATCTTAAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTC---TCATC-T-CGG
* *
58432056 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 -TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCT
58432099 TTACCCAAAT
Statistics
Matches: 168, Mismatches: 24, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
50 90 0.54
51 33 0.20
53 4 0.02
54 1 0.01
55 2 0.01
56 38 0.23
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGG
Found at i:58432036 original size:100 final size:104
Alignment explanation
Indices: 58431849--58432098 Score: 337
Period size: 100 Copynumber: 2.4 Consensus size: 104
58431839 TGATAATAAC
** * *
58431849 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATGTTGGTGCCCATGCCATG
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGGTGCCCATGCCATG
* *
58431914 TCCCAGACATGGTCTTATAGGGGACCTC-TCATC-T-CGG
65 TCCCAGACATGGTCTTACAGGGGACCTCTTCATCTTAAGG
* * *
58431951 -TGCCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCGTCTCGGTGCCCATGCCATGT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
*
58432015 CCCAGACATGGTCTTACAGGGGACCTCTTATGATCTTAAGG
66 CCCAGACATGGTCTTACAGGGGACCTC-T-TCATCTTAAGG
* *
58432056 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
58432099 TTACCCAAAT
Statistics
Matches: 129, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
100 48 0.37
101 35 0.27
103 4 0.03
104 1 0.01
105 2 0.02
106 39 0.30
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (104 bp):
ATGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTGCCCATGCCATGT
CCCAGACATGGTCTTACAGGGGACCTCTTCATCTTAAGG
Found at i:58432214 original size:13 final size:13
Alignment explanation
Indices: 58432193--58432223 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
58432183 GCTTAGATCA
*
58432193 TCATCAAATAAAT
1 TCATAAAATAAAT
58432206 TCATAAAATAAAT
1 TCATAAAATAAAT
58432219 TCATA
1 TCATA
58432224 GTTGCTGGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.13, G:0.00, T:0.32
Consensus pattern (13 bp):
TCATAAAATAAAT
Found at i:58432471 original size:30 final size:29
Alignment explanation
Indices: 58432436--58432492 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
58432426 CATCGACTCT
*
58432436 AACTTTTTCAAAATTACAATTTTACCCCTA
1 AACTTTTACAAAATTAC-ATTTTACCCCTA
* *
58432466 AACTTTTACATAATTACATTTTGCCCC
1 AACTTTTACAAAATTACATTTTACCCC
58432493 AAGGCTCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 9 0.38
30 15 0.62
ACGTcount: A:0.33, C:0.25, G:0.02, T:0.40
Consensus pattern (29 bp):
AACTTTTACAAAATTACATTTTACCCCTA
Found at i:58438478 original size:26 final size:27
Alignment explanation
Indices: 58438449--58438515 Score: 68
Period size: 26 Copynumber: 2.6 Consensus size: 27
58438439 CTAGTTTGGC
58438449 AATGCTTTTGAAAAGTAC-TTTTGAAA
1 AATGCTTTTGAAAAGTACTTTTTGAAA
* * * *
58438475 AATGC-TATGAAAAATGCTTTTTGAGA
1 AATGCTTTTGAAAAGTACTTTTTGAAA
*
58438501 AGTG-TTTTGAAAAGT
1 AATGCTTTTGAAAAGT
58438516 TTGGTTTAAA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
25 9 0.28
26 23 0.72
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.37
Consensus pattern (27 bp):
AATGCTTTTGAAAAGTACTTTTTGAAA
Found at i:58438738 original size:24 final size:24
Alignment explanation
Indices: 58438698--58438744 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
58438688 AATATATAGA
* *
58438698 AATATAATTTTAATATTTTTAAGC
1 AATATAATATTAATATTTATAAGC
58438722 AATA-AATATTAATTATTTATAAG
1 AATATAATATTAA-TATTTATAAG
58438745 ATTTAATTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (24 bp):
AATATAATATTAATATTTATAAGC
Found at i:58446359 original size:5 final size:5
Alignment explanation
Indices: 58446349--58446377 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
58446339 ATAACTTAAG
58446349 AATAT AATAT AATAT AATAT AAT-T AATAT
1 AATAT AATAT AATAT AATAT AATAT AATAT
58446378 TTTAATTAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
AATAT
Found at i:58449533 original size:17 final size:17
Alignment explanation
Indices: 58449511--58449544 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
58449501 ATCCACTAAT
*
58449511 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
58449528 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
58449545 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:58454160 original size:17 final size:17
Alignment explanation
Indices: 58454138--58454171 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
58454128 ATCCACTAAT
*
58454138 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
58454155 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
58454172 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:58460368 original size:41 final size:36
Alignment explanation
Indices: 58460323--58460413 Score: 92
Period size: 38 Copynumber: 2.3 Consensus size: 36
58460313 AGTGGCGTTT
58460323 TTAGCGGCGTTTGGACAAAAAACGCCACTAAAAATTAAGCA
1 TTAGCGGCGTTTGG---AAAAACGCCAC-AAAAA-TAAGCA
* * *
58460364 TTAGCGGCGCTTTTTGTAAAACGCCGCAAAAATAAGCA
1 TTAGCGGCG--TTTGGAAAAACGCCACAAAAATAAGCA
58460402 TTAGCGGCGTTT
1 TTAGCGGCGTTT
58460414 TCTGAAAAGC
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
36 3 0.07
38 15 0.33
39 5 0.11
40 9 0.20
41 9 0.20
43 4 0.09
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.24
Consensus pattern (36 bp):
TTAGCGGCGTTTGGAAAAACGCCACAAAAATAAGCA
Found at i:58460404 original size:38 final size:38
Alignment explanation
Indices: 58460341--58460433 Score: 127
Period size: 38 Copynumber: 2.4 Consensus size: 38
58460331 GTTTGGACAA
*
58460341 AAAACGCCACTAAAAATTAAGCATTAGCGGCGCTTTT-TG
1 AAAACGCCGC-AAAAATTAAGCATTAGCGGCG-TTTTCTG
58460380 TAAAACGCCGCAAAAA-TAAGCATTAGCGGCGTTTTCTG
1 -AAAACGCCGCAAAAATTAAGCATTAGCGGCGTTTTCTG
58460418 AAAAGCGCCGCAAAAA
1 AAAA-CGCCGCAAAAA
58460434 GCCTAAGCCC
Statistics
Matches: 50, Mismatches: 1, Indels: 6
0.88 0.02 0.11
Matches are distributed among these distances:
37 8 0.16
38 28 0.56
39 5 0.10
40 9 0.18
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.20
Consensus pattern (38 bp):
AAAACGCCGCAAAAATTAAGCATTAGCGGCGTTTTCTG
Found at i:58460531 original size:41 final size:41
Alignment explanation
Indices: 58460474--58460791 Score: 548
Period size: 41 Copynumber: 7.8 Consensus size: 41
58460464 TTTTGGGGCA
*
58460474 TTTAGCAGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
58460515 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
*
58460556 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGATCTGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
* *
58460597 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCGGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
* *
58460638 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCGGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
* *
58460679 TTTAGCGGCGTTTTTAAAGAAGCGCCGCTAATGCTCTGACC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
58460720 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
*
58460761 TTTAGCGGCGTTTTTGAAAAAGCG-CGCTAAT
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAAT
58460792 AATAATAAAA
Statistics
Matches: 267, Mismatches: 10, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
40 7 0.03
41 260 0.97
ACGTcount: A:0.20, C:0.23, G:0.28, T:0.29
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGCC
Found at i:58462198 original size:75 final size:78
Alignment explanation
Indices: 58462107--58462275 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 78
58462097 CAGTTAGGGA
* * * *
58462107 TTTAGGGTTTATGGATTCGGTGTCAGGTTA-T-GG-TTTAGATTAATTAGTGTGTTTTAATTTAT
1 TTTAGGGGTTAGGGATTCGGGGTCAGGTTAGTAGGATTTAAATTAATTAGTGTGTTTTAATTTAT
*
58462169 ATA-ATAAATAATG
66 ATATA-AAATAAGG
* * *
58462182 TTTAGGGGTTAGGGATTTGGGGTCGGGTTAGGGTTTAGGATTTAAATTAATTAGTGTTTTTTAAT
1 TTTAGGGGTTAGGGATTCGGGGTCAGGTTA--G--TAGGATTTAAATTAATTAGTGTGTTTTAAT
58462247 TTATATATAAAATAAGG
62 TTATATATAAAATAAGG
58462264 TTTAGGGGTTAG
1 TTTAGGGGTTAG
58462276 AGGTTTAGGG
Statistics
Matches: 78, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
75 25 0.32
80 1 0.01
81 2 0.03
82 49 0.63
83 1 0.01
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (78 bp):
TTTAGGGGTTAGGGATTCGGGGTCAGGTTAGTAGGATTTAAATTAATTAGTGTGTTTTAATTTAT
ATATAAAATAAGG
Found at i:58462281 original size:15 final size:14
Alignment explanation
Indices: 58462259--58462304 Score: 67
Period size: 15 Copynumber: 3.3 Consensus size: 14
58462249 ATATATAAAA
58462259 TAAGGTTTAGGGGT
1 TAAGGTTTAGGGGT
*
58462273 TAGAGGTTTAGGGTT
1 TA-AGGTTTAGGGGT
58462288 TAAGGTTT-GGGGT
1 TAAGGTTTAGGGGT
58462301 TAAG
1 TAAG
58462305 AGTTAGTAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 8 0.28
14 8 0.28
15 13 0.45
ACGTcount: A:0.22, C:0.00, G:0.41, T:0.37
Consensus pattern (14 bp):
TAAGGTTTAGGGGT
Found at i:58462293 original size:14 final size:14
Alignment explanation
Indices: 58462259--58462301 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
58462249 ATATATAAAA
*
58462259 TAAGGTTTAGGGGT
1 TAAGGTTTAGGGTT
58462273 TAGAGGTTTAGGGTT
1 TA-AGGTTTAGGGTT
*
58462288 TAAGGTTTGGGGTT
1 TAAGGTTTAGGGTT
58462302 AAGAGTTAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 13 0.50
15 13 0.50
ACGTcount: A:0.19, C:0.00, G:0.42, T:0.40
Consensus pattern (14 bp):
TAAGGTTTAGGGTT
Found at i:58462315 original size:82 final size:81
Alignment explanation
Indices: 58462147--58462315 Score: 182
Period size: 82 Copynumber: 2.1 Consensus size: 81
58462137 TGGTTTAGAT
* **
58462147 TAATTAGTGTGTTTTAATTTATATAATAAATAATGTTTAGGGGTTAGGGATTTGGGGTCGGGTTA
1 TAATTAGTGTGTTTTAATTTATATAATAAATAAGGTTTAGGGGTTAGGGATTTGGGGTAAGGTTA
* * * *
58462212 GGGTTTAGGATTTAAAT
66 GGGGTTAAGAGTT-AAG
* *
58462229 TAATTAGTGTTTTTTAATTTATAT-ATAAAATAAGGTTTAGGGGTTAGAGG-TTTAGGGTTTAAG
1 TAATTAGTGTGTTTTAATTTATATAAT-AAATAAGGTTTAGGGGTTAG-GGATTT-GGG-GTAAG
*
58462292 GTTTGGGGTTAAGAGTT-AG
62 GTTAGGGGTTAAGAGTTAAG
58462311 TAATT
1 TAATT
58462316 TAGAGTTTAG
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
81 2 0.03
82 51 0.70
83 5 0.07
84 15 0.21
ACGTcount: A:0.29, C:0.01, G:0.27, T:0.43
Consensus pattern (81 bp):
TAATTAGTGTGTTTTAATTTATATAATAAATAAGGTTTAGGGGTTAGGGATTTGGGGTAAGGTTA
GGGGTTAAGAGTTAAG
Found at i:58467857 original size:43 final size:43
Alignment explanation
Indices: 58467810--58468149 Score: 351
Period size: 43 Copynumber: 7.9 Consensus size: 43
58467800 CATTTGTAAT
* ** * * *
58467810 AAAAGCGCCGCTAAAGGTTATAATTTTTAGTGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGG
* * * * **
58467853 AAAAGCGTCGTTAAAGCTCATGGTCTATAGCGGTGTTTGT-CA
1 AAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGG
*
58467895 ACAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGGCGTTTGTGGG
1 A-AAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGG
*
58467939 AAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGGCGTTTGTGGG
1 AAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGG
* * * * *
58467982 AGAAGCGCCGCTAAAAGTCGTGGTCTATAGCGGCGTTTGTAGA
1 AAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGG
* **
58468025 AAAAGCGCCGCTAAAGGTCGTGGTCTATAGCGGCGTTTGT-AA
1 AAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGG
* * * ***
58468067 AAAAGCGCCGCTAAAAGTCGTGGTTTATAGCGGCGTTTGTATTCT
1 AAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTG--TGGG
* * * *
58468112 ACAAGCGCCGCTAAAGGTCTTGGTCTTTAGTGGCGTTT
1 AAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTT
58468150 TTAGAAAAAA
Statistics
Matches: 256, Mismatches: 36, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
42 39 0.15
43 183 0.71
44 2 0.01
45 32 0.12
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGGTCATGGTCTATAGCGGCGTTTGTGGG
Found at i:58468032 original size:129 final size:128
Alignment explanation
Indices: 58467841--58468171 Score: 414
Period size: 129 Copynumber: 2.6 Consensus size: 128
58467831 AATTTTTAGT
* * * *
58467841 GGCGTTTGTGGGAAAAGCGTCG-TTAAAGCTCATGGTCTATAGCGGTGTTTGTCA-ACAAAGCGC
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAAG-TCATGGTCTATAGCGGCGTTTGT-AGAAAAAGCGC
** *
58467904 CGCTAAAGGTCGTGGTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTATAG
64 CGCTAAAGGTCGTGGTCTATAGCGGCGTTTGT-AAAAAAGCGCCGCTAAAAGTCGTGGTCTATAG
58467969 C
128 C
* *
58467970 GGCGTTTGTGGGAGAAGCGCCGCTAAAAGTCGTGGTCTATAGCGGCGTTTGTAGAAAAAGCGCCG
1 GGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGGTCTATAGCGGCGTTTGTAGAAAAAGCGCCG
*
58468035 CTAAAGGTCGTGGTCTATAGCGGCGTTTGTAAAAAAGCGCCGCTAAAAGTCGTGGTTTATAGC
66 CTAAAGGTCGTGGTCTATAGCGGCGTTTGTAAAAAAGCGCCGCTAAAAGTCGTGGTCTATAGC
*** * * * * * * *
58468098 GGCGTTTGTATTCTACAAGCGCCGCTAAAGGTCTTGGTCTTTAGTGGCGTTTTTAGAAAAAAACG
1 GGCGTTTG--TGGGAAAAGCGCCGCTAAAAGTCATGGTCTATAGCGGCGTTTGTAG-AAAAAGCG
58468163 CCGCTAAAG
63 CCGCTAAAG
58468172 TTAGCGACGC
Statistics
Matches: 177, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
128 38 0.21
129 81 0.46
130 42 0.24
131 16 0.09
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.26
Consensus pattern (128 bp):
GGCGTTTGTGGGAAAAGCGCCGCTAAAAGTCATGGTCTATAGCGGCGTTTGTAGAAAAAGCGCCG
CTAAAGGTCGTGGTCTATAGCGGCGTTTGTAAAAAAGCGCCGCTAAAAGTCGTGGTCTATAGC
Found at i:58476270 original size:6 final size:6
Alignment explanation
Indices: 58476261--58476288 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
58476251 ACAAAAGAAA
58476261 ATGGGC ATGGGC ATGGGC ATGGGC ATGG
1 ATGGGC ATGGGC ATGGGC ATGGGC ATGG
58476289 TAAATATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.14, G:0.50, T:0.18
Consensus pattern (6 bp):
ATGGGC
Done.