Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 195 of 199
Found at i:61621498 original size:19 final size:19
Alignment explanation
Indices: 61621474--61621514 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
61621464 AAAAGTTTTA
* *
61621474 AAAAATTATAAAGAAAGTT
1 AAAAATTATAAAAAAAATT
*
61621493 AAAAATTTTAAAAAAAATT
1 AAAAATTATAAAAAAAATT
61621512 AAA
1 AAA
61621515 TAATAATTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (19 bp):
AAAAATTATAAAAAAAATT
Found at i:61624696 original size:18 final size:18
Alignment explanation
Indices: 61624652--61624698 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
61624642 ATAAAAATTT
*
61624652 AAAAATTAAAAAAGATGA
1 AAAAATGAAAAAAGATGA
61624670 AAAAGATGAAAAAA-ATGA
1 AAAA-ATGAAAAAAGATGA
*
61624688 CTAAAATGAAA
1 -AAAAATGAAA
61624699 CTTTTATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.70, C:0.02, G:0.13, T:0.15
Consensus pattern (18 bp):
AAAAATGAAAAAAGATGA
Found at i:61625012 original size:14 final size:16
Alignment explanation
Indices: 61624995--61625031 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
61624985 AAATAAAATT
61624995 ATATAAAATT-ATA-A
1 ATATAAAATTAATATA
*
61625009 ATATTAAATTAATATA
1 ATATAAAATTAATATA
61625025 ATATAAA
1 ATATAAA
61625032 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 9 0.47
15 3 0.16
16 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAATTAATATA
Found at i:61625035 original size:22 final size:24
Alignment explanation
Indices: 61624976--61625035 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 24
61624966 CTATGTAAAA
61624976 AAAATTAATAAATA--AAATTATAT
1 AAAATT-ATAAATATTAAATTATAT
61624999 AAAATTATAAATATTAAATTA-AT
1 AAAATTATAAATATTAAATTATAT
*
61625022 ATAA-TATAAATATT
1 AAAATTATAAATATT
61625036 TTTAAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
22 17 0.50
23 11 0.32
24 6 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAATTATAAATATTAAATTATAT
Found at i:61626116 original size:16 final size:17
Alignment explanation
Indices: 61626095--61626126 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
61626085 TTATAAACAA
61626095 AAGAAAGAAA-AGAAAT
1 AAGAAAGAAACAGAAAT
61626111 AAGAAAGAAACAGAAA
1 AAGAAAGAAACAGAAA
61626127 GCTTAAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (17 bp):
AAGAAAGAAACAGAAAT
Found at i:61626172 original size:18 final size:18
Alignment explanation
Indices: 61626149--61626183 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
61626139 ACAGTGAAGG
*
61626149 AAAGAAGGAAAGAAAAGA
1 AAAGAAAGAAAGAAAAGA
61626167 AAAGAAAGAAAGAAAAG
1 AAAGAAAGAAAGAAAAG
61626184 GGAAAATTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (18 bp):
AAAGAAAGAAAGAAAAGA
Found at i:61627578 original size:16 final size:17
Alignment explanation
Indices: 61627557--61627588 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
61627547 TTATAAACAA
61627557 AAGAAAGAAA-AGAAAT
1 AAGAAAGAAACAGAAAT
61627573 AAGAAAGAAACAGAAA
1 AAGAAAGAAACAGAAA
61627589 GCTTAAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (17 bp):
AAGAAAGAAACAGAAAT
Found at i:61629134 original size:14 final size:16
Alignment explanation
Indices: 61629117--61629153 Score: 51
Period size: 14 Copynumber: 2.4 Consensus size: 16
61629107 AAATAAAATT
61629117 ATATAAAATT-ATA-A
1 ATATAAAATTAATATA
*
61629131 ATATTAAATTAATATA
1 ATATAAAATTAATATA
61629147 ATATAAA
1 ATATAAA
61629154 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
14 9 0.47
15 3 0.16
16 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAAATTAATATA
Found at i:61629157 original size:22 final size:24
Alignment explanation
Indices: 61629098--61629157 Score: 74
Period size: 22 Copynumber: 2.6 Consensus size: 24
61629088 CTATGTAAAA
61629098 AAAATTAATAAATA--AAATTATAT
1 AAAATT-ATAAATATTAAATTATAT
61629121 AAAATTATAAATATTAAATTA-AT
1 AAAATTATAAATATTAAATTATAT
*
61629144 ATAA-TATAAATATT
1 AAAATTATAAATATT
61629158 TTTAAAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
22 17 0.50
23 11 0.32
24 6 0.18
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAATTATAAATATTAAATTATAT
Found at i:61642130 original size:20 final size:20
Alignment explanation
Indices: 61642107--61642180 Score: 96
Period size: 20 Copynumber: 3.7 Consensus size: 20
61642097 ACAAATTACA
61642107 AAAAATTCAAAATAATTTTC
1 AAAAATTCAAAATAATTTTC
*
61642127 AAAAATTCAAAATAACTTTC
1 AAAAATTCAAAATAATTTTC
*
61642147 AAATATTCCAAAATAATTTT-
1 AAAAATT-CAAAATAATTTTC
* *
61642167 TAAAACTCAAAATA
1 AAAAATTCAAAATA
61642181 TTTATAAAAT
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
19 7 0.15
20 29 0.62
21 11 0.23
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.32
Consensus pattern (20 bp):
AAAAATTCAAAATAATTTTC
Found at i:61642188 original size:18 final size:18
Alignment explanation
Indices: 61642155--61642203 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
61642145 TCAAATATTC
*
61642155 CAAAATAATTTTTAAAACT
1 CAAAAT-ATTTATAAAACT
*
61642174 CAAAATATTTATAAAATT
1 CAAAATATTTATAAAACT
*
61642192 CTAAA-ATTTATA
1 CAAAATATTTATA
61642204 TTTTTCAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
17 7 0.26
18 14 0.52
19 6 0.22
ACGTcount: A:0.53, C:0.08, G:0.00, T:0.39
Consensus pattern (18 bp):
CAAAATATTTATAAAACT
Found at i:61642197 original size:19 final size:19
Alignment explanation
Indices: 61642108--61642243 Score: 81
Period size: 20 Copynumber: 7.2 Consensus size: 19
61642098 CAAATTACAA
61642108 AAAATTCAAAATAATTT-T
1 AAAATTCAAAATAATTTAT
61642126 CAAAAATTCAAAATAACTTTCA-
1 --AAAATTCAAAATAA-TTT-AT
* *
61642148 AATATTCCAAAATAATTTTT
1 AAAATT-CAAAATAATTTAT
*
61642168 AAAACTCAAAAT-ATTTAT
1 AAAATTCAAAATAATTTAT
*
61642186 AAAATTC-TAA-AATTTAT
1 AAAATTCAAAATAATTTAT
***
61642203 ATTTTTCAAAA-AA-TTAT
1 AAAATTCAAAATAATTTAT
*
61642220 AAAAATTTCAAAA-AATTTCT
1 -AAAA-TTCAAAATAATTTAT
61642240 AAAA
1 AAAA
61642244 AATTTATAAA
Statistics
Matches: 91, Mismatches: 15, Indels: 21
0.72 0.12 0.17
Matches are distributed among these distances:
17 16 0.18
18 16 0.18
19 19 0.21
20 29 0.32
21 11 0.12
ACGTcount: A:0.54, C:0.10, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATTCAAAATAATTTAT
Found at i:61642234 original size:11 final size:10
Alignment explanation
Indices: 61642206--61642248 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
61642196 AATTTATATT
61642206 TTTCAAAAAA
1 TTTCAAAAAA
61642216 -TT-ATAAAAA
1 TTTCA-AAAAA
61642225 TTTCAAAAAA
1 TTTCAAAAAA
61642235 TTTCTAAAAAA
1 TTTC-AAAAAA
61642246 TTT
1 TTT
61642249 ATAAAGAAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
8 1 0.03
9 7 0.24
10 11 0.38
11 10 0.34
ACGTcount: A:0.56, C:0.07, G:0.00, T:0.37
Consensus pattern (10 bp):
TTTCAAAAAA
Found at i:61642276 original size:13 final size:13
Alignment explanation
Indices: 61642260--61642286 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
61642250 TAAAGAAAGT
61642260 TAATAATTTAAAA
1 TAATAATTTAAAA
61642273 TAATAATTTAAAA
1 TAATAATTTAAAA
61642286 T
1 T
61642287 TTAAAATAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TAATAATTTAAAA
Found at i:61643025 original size:23 final size:23
Alignment explanation
Indices: 61642999--61643070 Score: 67
Period size: 23 Copynumber: 3.1 Consensus size: 23
61642989 ATATTTTTTG
*
61642999 AAAATTTAGTCTGAACACGAATA
1 AAAATTTAGTCTGAACACGAAAA
* * *
61643022 AAAATGT-GTC-CACGACACAAAAA
1 AAAATTTAGTCTGA--ACACGAAAA
*
61643045 AAAATTTAGTCTGAACACGAACA
1 AAAATTTAGTCTGAACACGAAAA
61643068 AAA
1 AAA
61643071 TTGATCTATT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
21 1 0.03
22 3 0.08
23 29 0.78
24 3 0.08
25 1 0.03
ACGTcount: A:0.51, C:0.17, G:0.12, T:0.19
Consensus pattern (23 bp):
AAAATTTAGTCTGAACACGAAAA
Found at i:61643890 original size:12 final size:12
Alignment explanation
Indices: 61643858--61643900 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
61643848 CTAATCATCG
*
61643858 CTCAAATTTCCT
1 CTCAATTTTCCT
61643870 CTCAA-TTTCCT
1 CTCAATTTTCCT
*
61643881 CTAAATTTT-CT
1 CTCAATTTTCCT
61643892 CTCAATTTT
1 CTCAATTTT
61643901 GGTGTTGAGA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 20 0.71
12 8 0.29
ACGTcount: A:0.23, C:0.28, G:0.00, T:0.49
Consensus pattern (12 bp):
CTCAATTTTCCT
Found at i:61643900 original size:11 final size:11
Alignment explanation
Indices: 61643862--61643899 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
61643852 TCATCGCTCA
61643862 AATTTCCTCTC
1 AATTTCCTCTC
*
61643873 AATTTCCTCTA
1 AATTTCCTCTC
*
61643884 AATTTTCTCTC
1 AATTTCCTCTC
61643895 AATTT
1 AATTT
61643900 TGGTGTTGAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.00, T:0.50
Consensus pattern (11 bp):
AATTTCCTCTC
Found at i:61644832 original size:115 final size:115
Alignment explanation
Indices: 61644230--61644807 Score: 1113
Period size: 115 Copynumber: 5.0 Consensus size: 115
61644220 AGATATTAAT
61644230 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
61644295 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61644345 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
61644410 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61644460 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
61644525 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61644575 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
* *
61644640 GAATGGTAGTGTCGGCATTGTTTATTCATTGGTAGCTGAAAAGAAAATAA
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61644690 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
1 TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
* *
61644755 GAATGGTAGTGTCGGCATTGTTTATTCATTGGTAGCTGAAAAGAAAAT-A
66 GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
61644804 TAGT
1 TAGT
61644808 TGAGCTGCGG
Statistics
Matches: 461, Mismatches: 2, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
114 5 0.01
115 456 0.99
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (115 bp):
TAGTGAAGATGAGTACATGTGAACAATGACATTAAATGTATGTCCTGTGGGTGTGCAGGAAAGAT
GAATGGTAGTGTCGGCATTGTTTATTGATTGGTAGCTGATAAGAAAATAA
Found at i:61651722 original size:16 final size:16
Alignment explanation
Indices: 61651701--61651733 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
61651691 TTCGCTGTAT
61651701 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
61651717 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
61651733 T
1 T
61651734 AACAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:61652098 original size:120 final size:121
Alignment explanation
Indices: 61651950--61652242 Score: 484
Period size: 120 Copynumber: 2.4 Consensus size: 121
61651940 ATCATATTTA
* *
61651950 AACATAATTATTATTAAATATATTATAATTAAAACATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
61652015 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAA-ATT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATATT
*
61652070 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
61652135 TATTCTTATATGAATTTACTCAAATCATAATATATTATACTATAAAAGATAATTTT
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATATT
* *
61652191 AA-ATAATTAA-TATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAA-TAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
61652243 TAAAATAATT
Statistics
Matches: 163, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
120 156 0.96
121 7 0.04
ACGTcount: A:0.51, C:0.05, G:0.02, T:0.42
Consensus pattern (121 bp):
AACATAATAATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATATT
Found at i:61652180 original size:61 final size:61
Alignment explanation
Indices: 61651995--61652181 Score: 183
Period size: 61 Copynumber: 3.1 Consensus size: 61
61651985 ATATAATTTA
* *
61651995 ATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCATAATATATGATACT
1 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATTATACT
* * * * * * *
61652056 ATAAAA-TATAAATTAACATAATAATTATTAAAT-ATATTATAATTAAA--AT-ATATAATT-TA
1 ATAAAATTCTTAA-TAA-TTAAT-ATTCTTATATGA-ATT-TACTCAAATCATAATAT-ATTATA
61652115 --
60 CT
61652115 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATTATACT
1 ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATTATACT
61652176 ATAAAA
1 ATAAAA
61652182 GATAATTTTA
Statistics
Matches: 96, Mismatches: 16, Indels: 28
0.69 0.11 0.20
Matches are distributed among these distances:
56 6 0.06
57 11 0.11
58 10 0.10
59 15 0.16
60 8 0.08
61 21 0.22
62 8 0.08
63 11 0.11
64 6 0.06
ACGTcount: A:0.50, C:0.07, G:0.02, T:0.41
Consensus pattern (61 bp):
ATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATTATACT
Found at i:61652239 original size:59 final size:58
Alignment explanation
Indices: 61652043--61652240 Score: 133
Period size: 59 Copynumber: 3.3 Consensus size: 58
61652033 CTCAAATCAT
* *
61652043 AATATATGATACT-ATAAAATATAA-ATTAACATAA-TAATTATTAAATATATTATAATTAA
1 AATATATGAT-TTAATAAAA-ATAATATTAA-ATAATTAA-TATTAAATATATTTTAATTAA
* * ** * * *
61652102 AATATATAATTTAAT-AAAAT--TCTT-AATAATTAATATTCTTATATGAATTTACTCAA
1 AATATATGATTTAATAAAAATAATATTAAATAATTAATATT-AAATAT-ATTTTAATTAA
*
61652158 ATCATAATAT-ATTATACTATAAAAGATAATTTTAAATAATTAATATTAAATATATTTTAATTAA
1 A--AT-ATATGATT-TA--ATAAAA-ATAATATTAAATAATTAATATTAAATATATTTTAATTAA
61652222 AATATATGATTTAATAAAA
1 AATATATGATTTAATAAAA
61652241 TTTAAAATAA
Statistics
Matches: 107, Mismatches: 15, Indels: 34
0.69 0.10 0.22
Matches are distributed among these distances:
54 8 0.07
55 8 0.07
56 10 0.09
57 2 0.02
58 9 0.08
59 23 0.21
61 8 0.07
62 8 0.07
63 2 0.02
64 9 0.08
65 7 0.07
66 13 0.12
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (58 bp):
AATATATGATTTAATAAAAATAATATTAAATAATTAATATTAAATATATTTTAATTAA
Found at i:61652312 original size:26 final size:28
Alignment explanation
Indices: 61652283--61652343 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
61652273 TATGAATTTG
*
61652283 TATAATTTAA-AATAAT-TATTATTACA
1 TATAATTTAATAATAATATATAATTACA
*
61652309 TATAATTTAATAATAATATATAATTTCA
1 TATAATTTAATAATAATATATAATTACA
*
61652337 TAAAATT
1 TATAATT
61652344 CTTGATAATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.51, C:0.03, G:0.00, T:0.46
Consensus pattern (28 bp):
TATAATTTAATAATAATATATAATTACA
Found at i:61652352 original size:101 final size:93
Alignment explanation
Indices: 61652183--61652461 Score: 307
Period size: 91 Copynumber: 2.9 Consensus size: 93
61652173 ACTATAAAAG
* * * *
61652183 ATAATTTTAAATAATTAATATTAAATATATTTTAATTAA-AATATATGATTTAATAAAATT-TAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAA-TAATAATATATAATTTCATAAAATTCT--
* * *
61652246 AATAATTATAACTAATAAATTATCTTATATGAATTTGT
63 --T-A--ATAA-T-ATAAATTTTCTTATATGAACTTAT
* * *
61652284 ATAATTTAAAATAATTATTATTACATATAATTTAATAATAATATATAATTTCATAAAATTCTTGA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
61652349 T-A-ATAAATTTTCTTATATGAACTTAT
66 TAATATAAATTTTCTTATATGAACTTAT
* * *
61652375 ACAATTTAAAATAATTAATATTAAATTTAATTTAATAATGATATATAATTTCATAAAATTCTTAA
1 ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
*
61652440 TAATA-AAATGTTCTTATATGAA
66 TAATATAAATTTTCTTATATGAA
61652462 TTTACTAAAA
Statistics
Matches: 157, Mismatches: 17, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
91 81 0.52
92 17 0.11
93 1 0.01
94 1 0.01
95 2 0.01
98 1 0.01
100 3 0.02
101 50 0.32
102 1 0.01
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (93 bp):
ATAATTTAAAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTCTTAA
TAATATAAATTTTCTTATATGAACTTAT
Found at i:61652353 original size:91 final size:90
Alignment explanation
Indices: 61652258--61652465 Score: 308
Period size: 91 Copynumber: 2.3 Consensus size: 90
61652248 TAATTATAAC
* * * *
61652258 TAATAAATTATCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATAATTTAATAAT
1 TAATAAATT-TCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
61652323 AATATATAATTTCATAAAATTCTTGA
65 AATATATAATTTCATAAAATTCTTAA
* *
61652349 TAATAAATTTTCTTATATGAACTTATACAATTTAAAATAATTAATATTAAATTTAATTTAATAAT
1 TAATAAA-TTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
*
61652414 GATATATAATTTCATAAAATTCTTAA
65 AATATATAATTTCATAAAATTCTTAA
61652440 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAAT-TTCTTATATGAATTTA
61652466 CTAAAATCAA
Statistics
Matches: 105, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
91 85 0.81
92 20 0.19
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (90 bp):
TAATAAATTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAATA
ATATATAATTTCATAAAATTCTTAA
Found at i:61652425 original size:44 final size:44
Alignment explanation
Indices: 61652283--61652425 Score: 114
Period size: 44 Copynumber: 3.2 Consensus size: 44
61652273 TATGAATTTG
* * * *
61652283 TATAATTTAAAATAATTATTATTACATATAATTTAATAATAATA
1 TATAATTTAAAATAATTAATATTAAATTTAATTTAATAATGATA
** * *
61652327 TATAATTTCATAAAATTCTTGATAATAAATTT--TCTT-AT-ATGAACTTA
1 TATAA-TT--TAAAATAATTAATATTAAATTTAAT-TTAATAATG-A--TA
*
61652374 TACAATTTAAAATAATTAATATTAAATTTAATTTAATAATGATA
1 TATAATTTAAAATAATTAATATTAAATTTAATTTAATAATGATA
61652418 TATAATTT
1 TATAATTT
61652426 CATAAAATTC
Statistics
Matches: 74, Mismatches: 14, Indels: 22
0.67 0.13 0.20
Matches are distributed among these distances:
44 34 0.46
45 8 0.11
46 8 0.11
47 24 0.32
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (44 bp):
TATAATTTAAAATAATTAATATTAAATTTAATTTAATAATGATA
Found at i:61652441 original size:47 final size:47
Alignment explanation
Indices: 61652311--61652446 Score: 133
Period size: 44 Copynumber: 3.0 Consensus size: 47
61652301 TTATTACATA
* *
61652311 TAATTTAATAATAATATATAATTTCATAAAATTCTTGATAATAAATT
1 TAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAAATT
* ** *
61652358 T--TCTT-AT-ATGA-ACTTATACAATT--TAAAATAATTAATATTAAATT
1 TAAT-TTAATAATGATA--TATA-ATTTCATAAAATTCTTAATAATAAATT
61652402 TAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAAA
1 TAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAAA
61652447 ATGTTCTTAT
Statistics
Matches: 68, Mismatches: 10, Indels: 22
0.68 0.10 0.22
Matches are distributed among these distances:
43 1 0.01
44 21 0.31
45 12 0.18
46 12 0.18
47 21 0.31
48 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.44
Consensus pattern (47 bp):
TAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAAATT
Found at i:61656015 original size:43 final size:41
Alignment explanation
Indices: 61655968--61656073 Score: 142
Period size: 43 Copynumber: 2.5 Consensus size: 41
61655958 TTATATTTTG
*
61655968 GATTTAAATGTATAGTTTTATATT-AATATTATATAATCAAAAT
1 GATTTTAAT-TATA-TTTTA-ATTAAATATTATATAATCAAAAT
*
61656011 GATTTTAATTATATTTCAATTAAAAATATTATATAATCAAAAT
1 GATTTTAATTATATTTTAATT--AAATATTATATAATCAAAAT
61656054 GATTTTAATTATATTTTAAT
1 GATTTTAATTATATTTTAAT
61656074 ATACCTTAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
40 3 0.05
41 4 0.07
42 4 0.07
43 46 0.81
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (41 bp):
GATTTTAATTATATTTTAATTAAATATTATATAATCAAAAT
Found at i:61656022 original size:23 final size:23
Alignment explanation
Indices: 61655995--61656067 Score: 71
Period size: 23 Copynumber: 3.3 Consensus size: 23
61655985 TTATATTAAT
61655995 ATTATATAATCAAAATGATTTTA
1 ATTATATAATCAAAATGATTTTA
* * * ***
61656018 ATTATAT-TTC-AATTAAAAAT-
1 ATTATATAATCAAAATGATTTTA
61656038 ATTATATAATCAAAATGATTTTA
1 ATTATATAATCAAAATGATTTTA
61656061 ATTATAT
1 ATTATAT
61656068 TTTAATATAC
Statistics
Matches: 35, Mismatches: 12, Indels: 6
0.66 0.23 0.11
Matches are distributed among these distances:
20 7 0.20
21 7 0.20
22 7 0.20
23 14 0.40
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (23 bp):
ATTATATAATCAAAATGATTTTA
Found at i:61657670 original size:21 final size:22
Alignment explanation
Indices: 61657627--61657681 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
61657617 AAGCAGATGG
61657627 AGCCACTGCAAATAAATTATAT
1 AGCCACTGCAAATAAATTATAT
* *
61657649 AGCCACTGCAAA-CAATTGTAT
1 AGCCACTGCAAATAAATTATAT
61657670 AGCCACATGCAA
1 AGCCAC-TGCAA
61657682 TGGGGGGAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 13 0.43
22 17 0.57
ACGTcount: A:0.42, C:0.24, G:0.13, T:0.22
Consensus pattern (22 bp):
AGCCACTGCAAATAAATTATAT
Found at i:61658281 original size:46 final size:46
Alignment explanation
Indices: 61658224--61658317 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
61658214 AAGAGTATGA
61658224 GTAGTACCCTCTGTCTTCTTGAGGAGTTGTCTATCTATAAGTGTTC
1 GTAGTACCCTCTGTCTTCTTGAGGAGTTGTCTATCTATAAGTGTTC
61658270 GTAGTACCCTCTGTCTTCTTGAGGAGTTGTCTATCTATAAGTGTTC
1 GTAGTACCCTCTGTCTTCTTGAGGAGTTGTCTATCTATAAGTGTTC
61658316 GT
1 GT
61658318 CTCTAATGTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.17, C:0.19, G:0.22, T:0.41
Consensus pattern (46 bp):
GTAGTACCCTCTGTCTTCTTGAGGAGTTGTCTATCTATAAGTGTTC
Found at i:61664201 original size:14 final size:14
Alignment explanation
Indices: 61664184--61664234 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
61664174 TAAAAAATTA
61664184 ATAAATAAAAATAT
1 ATAAATAAAAATAT
*
61664198 ATAAAATTATAAATAT
1 AT-AAA-TAAAAATAT
*
61664214 -TAAATTAAAATAAT
1 ATAAATAAAAAT-AT
61664228 ATAAATA
1 ATAAATA
61664235 TTTTTAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
13 5 0.17
14 7 0.24
15 9 0.31
16 8 0.28
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (14 bp):
ATAAATAAAAATAT
Found at i:61664211 original size:16 final size:15
Alignment explanation
Indices: 61664186--61664232 Score: 53
Period size: 14 Copynumber: 3.1 Consensus size: 15
61664176 AAAAATTAAT
*
61664186 AAATAAAAATATATA
1 AAATTAAAATATATA
61664201 AAATTATAAATAT-T-
1 AAATTA-AAATATATA
61664215 AAATTAAAATAATATA
1 AAATTAAAAT-ATATA
61664231 AA
1 AA
61664233 TATTTTTAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
13 4 0.15
14 8 0.30
15 7 0.26
16 8 0.30
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATTAAAATATATA
Found at i:61665321 original size:46 final size:46
Alignment explanation
Indices: 61665211--61665448 Score: 383
Period size: 46 Copynumber: 5.2 Consensus size: 46
61665201 CGTATGATCT
* *
61665211 CTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCA
* *
61665254 CTTATCACTTTGTCTCTTGATCAGATAAGTGTAGCTAAAGCTATCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCA
*
61665300 CTTATCACTTTGTCACATGATCAGATAAGTGTAGCTAAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCA
* * *
61665346 CTTATCACTTTATCACTTGATTAGATAAGTGTAGTTAAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCA
61665392 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCA
1 CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCA
61665438 CTTATCACTTT
1 CTTATCACTTT
61665449 CCACTTGTCA
Statistics
Matches: 179, Mismatches: 13, Indels: 3
0.92 0.07 0.02
Matches are distributed among these distances:
43 8 0.04
44 5 0.03
45 20 0.11
46 146 0.82
ACGTcount: A:0.29, C:0.21, G:0.15, T:0.34
Consensus pattern (46 bp):
CTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTACCA
Found at i:61670649 original size:16 final size:17
Alignment explanation
Indices: 61670628--61670659 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
61670618 TTATAAACAA
61670628 AAGAAAGAAA-AGAAAT
1 AAGAAAGAAACAGAAAT
61670644 AAGAAAGAAACAGAAA
1 AAGAAAGAAACAGAAA
61670660 GCTTAAAACG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.75, C:0.03, G:0.19, T:0.03
Consensus pattern (17 bp):
AAGAAAGAAACAGAAAT
Found at i:61672193 original size:14 final size:14
Alignment explanation
Indices: 61672160--61672226 Score: 50
Period size: 14 Copynumber: 4.7 Consensus size: 14
61672150 TTAAGGTGTC
61672160 TATATAAA-AAAAA
1 TATATAAATAAAAA
61672173 T-TAATAAATAAAAA
1 TAT-ATAAATAAAAA
*
61672187 TATATAAAATTATAAA
1 TATAT-AAA-TAAAAA
* *
61672203 TAT-TAAATTAATA
1 TATATAAATAAAAA
61672216 TAATATAAATA
1 T-ATATAAATA
61672227 TTTTAAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 12
0.71 0.08 0.20
Matches are distributed among these distances:
12 1 0.02
13 10 0.24
14 13 0.31
15 10 0.24
16 8 0.19
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
TATATAAATAAAAA
Found at i:61673605 original size:16 final size:15
Alignment explanation
Indices: 61673575--61673604 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
61673565 GCAACACAAA
61673575 AAAAAATTATTTTTT
1 AAAAAATTATTTTTT
*
61673590 AAAACATTATTTTTT
1 AAAAAATTATTTTTT
61673605 TTCTAATGGC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
AAAAAATTATTTTTT
Found at i:61678648 original size:29 final size:30
Alignment explanation
Indices: 61678616--61678677 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
61678606 TTAGTAAGAA
* *
61678616 TTTAAAAAAT-TATTATAACTTGTT-AATAT
1 TTTAAAAAATGAATTATAAATT-TTAAATAT
*
61678645 TTTAATAAATGAATTATAAATTTTAAATAT
1 TTTAAAAAATGAATTATAAATTTTAAATAT
61678675 TTT
1 TTT
61678678 TAAGCAATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 11 0.39
30 17 0.61
ACGTcount: A:0.45, C:0.02, G:0.03, T:0.50
Consensus pattern (30 bp):
TTTAAAAAATGAATTATAAATTTTAAATAT
Found at i:61679217 original size:235 final size:235
Alignment explanation
Indices: 61678801--61679242 Score: 767
Period size: 235 Copynumber: 1.9 Consensus size: 235
61678791 CTCATCTTGG
61678801 ATGGCAGATTCTTGTTTCAAAAGTTGAAGCGTTCTGAGGAGCATTTATCGACTTATTCAATGGTT
1 ATGGCAGATTCTTGTTTCAAAAGTTGAAGCGTTCTGAGGAGCATTTATCGACTTATTCAATGGTT
** *
61678866 TGGGTGAGTTATGTATAGTTTTAAATATAGTATTTATCCTCTTCTATACTTCAGCTAATGCAAGA
66 TGAATGAGTTATGTATAGTTCTAAATATAGTATTTATCCTCTTCTATACTTCAGCTAATGCAAGA
* * *
61678931 CGTAAAGCATCAATGAAGAGTTTTGTCTTTCTTTTGATTGTCACTATCCTTTCTTGTTCAGCTGA
131 CGTAAAGCATCAATGAAGAGTTTTGTCTTTCTTTTAATTGTCACAATCCTTTCTTGTTCAGCTAA
61678996 AATGAAAAAAAAAAAAACATCTTGAGGCTTATTTTAAAAT
196 AATGAAAAAAAAAAAAACATCTTGAGGCTTATTTTAAAAT
*
61679036 ATGGCAGATTCTTGTTTCAAAAGTTGAAGCGTTCTGAGGCGCATTTATCGACTTATTCAATGGTT
1 ATGGCAGATTCTTGTTTCAAAAGTTGAAGCGTTCTGAGGAGCATTTATCGACTTATTCAATGGTT
* * * *
61679101 TGAATGAGTTATGTATAGTTCTAAGTATTGTATTTATCCTCTTCTATACTTTAGCTAATGCGAGA
66 TGAATGAGTTATGTATAGTTCTAAATATAGTATTTATCCTCTTCTATACTTCAGCTAATGCAAGA
* *
61679166 CGTAAAGCATCAATGAAGATTTTTGTCTTTCTTTTAATTGTCACAATCCTTTTTTGTTCAGCTAA
131 CGTAAAGCATCAATGAAGAGTTTTGTCTTTCTTTTAATTGTCACAATCCTTTCTTGTTCAGCTAA
61679231 AATGAAAAAAAA
196 AATGAAAAAAAA
61679243 GAAGCTTAAA
Statistics
Matches: 194, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
235 194 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (235 bp):
ATGGCAGATTCTTGTTTCAAAAGTTGAAGCGTTCTGAGGAGCATTTATCGACTTATTCAATGGTT
TGAATGAGTTATGTATAGTTCTAAATATAGTATTTATCCTCTTCTATACTTCAGCTAATGCAAGA
CGTAAAGCATCAATGAAGAGTTTTGTCTTTCTTTTAATTGTCACAATCCTTTCTTGTTCAGCTAA
AATGAAAAAAAAAAAAACATCTTGAGGCTTATTTTAAAAT
Found at i:61680284 original size:16 final size:16
Alignment explanation
Indices: 61680260--61680297 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
61680250 TTTGGCTCGC
*
61680260 TGTATTGGAATAGAGG
1 TGTAATGGAATAGAGG
61680276 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
61680292 CGTAAT
1 TGTAAT
61680298 AGCAATTCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.03, G:0.34, T:0.29
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:61680340 original size:45 final size:44
Alignment explanation
Indices: 61680276--61680373 Score: 137
Period size: 44 Copynumber: 2.2 Consensus size: 44
61680266 GGAATAGAGG
61680276 TGTAATGGAATAGAGGCGTAATAGCA-ATTCAAT-TGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATA--ATATTC-ATGTGTTTGGTTGAA
*
61680321 TGTAATGGAATAGAGGCGTAATAATATTCTTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAATATTCATGTGTTTGGTTGAA
*
61680365 TGGAATGGA
1 TGTAATGGA
61680374 GGTGTAATAG
Statistics
Matches: 49, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
43 2 0.04
44 24 0.49
45 23 0.47
ACGTcount: A:0.32, C:0.05, G:0.29, T:0.35
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAATATTCATGTGTTTGGTTGAA
Found at i:61680578 original size:22 final size:18
Alignment explanation
Indices: 61680535--61680569 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
61680525 ATTATTATTA
61680535 AATATAATTTAATAAAAT
1 AATATAATTTAATAAAAT
61680553 -ATATAATTTAATAAAAT
1 AATATAATTTAATAAAAT
61680570 TCTTAATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AATATAATTTAATAAAAT
Found at i:61680634 original size:22 final size:23
Alignment explanation
Indices: 61680602--61680645 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
61680592 ATGAATTTAC
*
61680602 TAAAATCATAATATATAATAATA
1 TAAAATCATAATATAAAATAATA
61680625 TAAAAT-ATAATATAAAATAAT
1 TAAAATCATAATATAAAATAAT
61680646 TATTATTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 14 0.70
23 6 0.30
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (23 bp):
TAAAATCATAATATAAAATAATA
Found at i:61680709 original size:120 final size:120
Alignment explanation
Indices: 61680522--61680872 Score: 549
Period size: 120 Copynumber: 3.0 Consensus size: 120
61680512 ATATTTTAAC
61680522 ATAATTATTATTAAATATAATTTAAT-AAAATATATAATTTAATAAAATTCTTAATATTAAATAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
61680586 TCTTATATGAATTTACTAAAATCATAATATATAATAATATAAAATATAATATAAA
66 TCTTATATGAATTTACTAAAATCATAATATATAATAATATAAAATATAATATAAA
61680641 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
1 ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
* * * *
61680706 TCTTATATGAATTTACTAAAATCATAATATA-AATACTACAAAATATAGT-T-TA
66 TCTTATATGAATTTACTAAAATCATAATATATAATAATATAAAATATAATATAAA
* *
61680758 A-AATTATTATTAAATATAA-TTAGATACAAATATATAA-TTAATAAAATTATTAATATTAAATA
1 ATAATTATTATTAAATATAATTTA-ATAAAAATATATAATTTAATAAAATTCTTAATATTAAATA
* *
61680820 TTCTTATATAAATTTACTAAAATCATAATATATAAT-A-CTAAAATCATAATATA
65 TTCTTATATGAATTTACTAAAATCATAATATATAATAATATAAAAT-ATAATATA
61680873 TATAATTTAA
Statistics
Matches: 215, Mismatches: 11, Indels: 14
0.90 0.05 0.06
Matches are distributed among these distances:
114 5 0.02
115 62 0.29
116 35 0.16
117 2 0.01
118 1 0.00
119 41 0.19
120 69 0.32
ACGTcount: A:0.53, C:0.05, G:0.01, T:0.41
Consensus pattern (120 bp):
ATAATTATTATTAAATATAATTTAATAAAAATATATAATTTAATAAAATTCTTAATATTAAATAT
TCTTATATGAATTTACTAAAATCATAATATATAATAATATAAAATATAATATAAA
Found at i:61680878 original size:23 final size:21
Alignment explanation
Indices: 61680834--61680874 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
61680824 TATATAAATT
61680834 TACTAAAATCATAATATATAA
1 TACTAAAATCATAATATATAA
61680855 TACTAAAATCATAATATATA
1 TACTAAAATCATAATATATA
61680875 TAATTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.56, C:0.10, G:0.00, T:0.34
Consensus pattern (21 bp):
TACTAAAATCATAATATATAA
Found at i:61687464 original size:44 final size:43
Alignment explanation
Indices: 61687415--61687827 Score: 223
Period size: 44 Copynumber: 9.5 Consensus size: 43
61687405 ATCTACTCTG
* * * *
61687415 CTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTT-CTTCAATCTGCTCCA
* * ** * * *
61687459 CTGTAACTTCAGGGAGATAGGATAGTGTCTTCGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
* **
61687502 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCA
1 CTGTAACCTCAGGGAGATAAGATC-CTTTCTTCAATCTGCTCCA
* * ** *
61687546 CTGTAACCTCAGGAAGATAAGAT-CTGAAATTCTCCGGTCTACTCCA
1 CTGTAACCTCAGGGAGATAAGATCCT----TTCTTCAATCTGCTCCA
* * * * * *
61687592 CTGTAACCTCAGGGAAATAAGA-CCTGAT-GT-GATCTTCTCTA
1 CTGTAACCTCAGGGAGATAAGATCCT-TTCTTCAATCTGCTCCA
* * *
61687633 CTGTAACTTCAGAGAGATAAGATCC--T-TT-AATCCGCTCCA
1 CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
* * ** * * * ** *
61687672 TTGTAATCTCAAAGAGATAGGATTACTATCTTTGATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGA-TCCTTTCTTCAATCTGCTCCA
* ** *
61687716 CTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCG
1 CTGTAACCTCAGGGAGATAAGATC-CTTTCTTCAATCTGCTCCA
*** *
61687760 CTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTTGGTCTGTTCCA
1 CTGTAACCTCAGGGAGATAAGATCCT----TTCTTCAATCTGCTCCA
*
61687806 CTGTAATCTCAGGGAGATAAGA
1 CTGTAACCTCAGGGAGATAAGA
61687828 CCTGTATAAT
Statistics
Matches: 281, Mismatches: 71, Indels: 32
0.73 0.18 0.08
Matches are distributed among these distances:
39 26 0.09
40 2 0.01
41 27 0.10
42 7 0.02
43 34 0.12
44 121 0.43
46 64 0.23
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (43 bp):
CTGTAACCTCAGGGAGATAAGATCCTTTCTTCAATCTGCTCCA
Found at i:61687544 original size:87 final size:87
Alignment explanation
Indices: 61687404--61687564 Score: 207
Period size: 87 Copynumber: 1.9 Consensus size: 87
61687394 GACTTGATGT
* * * * *
61687404 GATCTACTCTGCTGTAACCTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTC
1 GATCTACTCCGCTGTAACCTCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTC
*
61687469 AGGGAGATAGGATAGTGTCTTC
66 AGGAAGATAGGATAGTGTCTTC
* * * * *
61687491 GATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTAACCT
1 GATCTACTCCGCTGTAACCTCAGAGAGATAAGATCCT-TGACTTCAATCCGCTCCACTGTAACCT
61687555 CAGGAAGATA
65 CAGGAAGATA
61687565 AGATCTGAAA
Statistics
Matches: 62, Mismatches: 11, Indels: 2
0.83 0.15 0.03
Matches are distributed among these distances:
86 2 0.03
87 60 0.97
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (87 bp):
GATCTACTCCGCTGTAACCTCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTC
AGGAAGATAGGATAGTGTCTTC
Found at i:61687766 original size:214 final size:214
Alignment explanation
Indices: 61687364--61687831 Score: 679
Period size: 214 Copynumber: 2.2 Consensus size: 214
61687354 GTTGTTTTCA
* * * * *
61687364 GTCTATTCCACTGCATCTTCAGGGAAATAAGACTTGATGTGATCTACTCTGCTGTAACCTCAGAG
1 GTCTATTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTACTCTACTGTAACCTCAGAG
** * *
61687429 AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATAGTGTCTTCGAT
66 AGATAAGATCC----TTTTAATCCGCTCCACTGTAACTTCAAAGAGATAGGATACTATCTTCGAT
61687494 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGG
127 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGG
61687559 AAGATAAGATCTGAAATTCTCCG
192 AAGATAAGATCTGAAATTCTCCG
* * *
61687582 GTCTACTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTTCTCTACTGTAACTTCAGAG
1 GTCTATTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTACTCTACTGTAACCTCAGAG
* *
61687647 AGATAAGATCC-TTTAATCCGCTCCATTGTAA-TCTCAAAGAGATAGGATTACTATCTTTGATCT
66 AGATAAGATCCTTTTAATCCGCTCCACTGTAACT-TCAAAGAGATAGGA-TACTATCTTCGATCT
* *
61687710 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCGCTGTAACCTCAGGGA
129 GCTCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGAA
**
61687775 GATAAGATCTGAAATTCTTTG
194 GATAAGATCTGAAATTCTCCG
* * *
61687796 GTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG
1 GTCTATTCCACTGTAACCTCAGGGAAATAAGACCTG
61687832 TATAATAAAC
Statistics
Matches: 226, Mismatches: 22, Indels: 8
0.88 0.09 0.03
Matches are distributed among these distances:
212 1 0.00
213 31 0.14
214 126 0.56
218 68 0.30
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (214 bp):
GTCTATTCCACTGTAACCTCAGGGAAATAAGACCTGATGTGATCTACTCTACTGTAACCTCAGAG
AGATAAGATCCTTTTAATCCGCTCCACTGTAACTTCAAAGAGATAGGATACTATCTTCGATCTGC
TCCGCTGTAATCTCAGGGAGATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGAAGA
TAAGATCTGAAATTCTCCG
Found at i:61700557 original size:33 final size:32
Alignment explanation
Indices: 61700520--61700592 Score: 78
Period size: 33 Copynumber: 2.2 Consensus size: 32
61700510 ACATACATAA
61700520 ATTATAAA-A-TAGATAATATAGTCATGTATATAT
1 ATTATAAATATTAGA-AATATA-T-ATGTATATAT
*
61700553 ATTATTAAATATTAGACATATATATGTATATAT
1 ATTA-TAAATATTAGAAATATATATGTATATAT
61700586 ATATATA
1 AT-TATA
61700593 GTAAGATTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
33 18 0.51
34 7 0.20
35 6 0.17
36 4 0.11
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.42
Consensus pattern (32 bp):
ATTATAAATATTAGAAATATATATGTATATAT
Found at i:61701944 original size:23 final size:23
Alignment explanation
Indices: 61701873--61701980 Score: 136
Period size: 23 Copynumber: 4.9 Consensus size: 23
61701863 CCTGATCAGT
61701873 ATACGACACAT-AAGTGCCTGA-
1 ATACGACACATAAAGTGCCTGAG
** *
61701894 A-ACGACACACGAGGTGCCT--G
1 ATACGACACATAAAGTGCCTGAG
61701914 ATACGACACATAAAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
* *
61701937 ATATGACACATATAGTGCCTGAG
1 ATACGACACATAAAGTGCCTGAG
61701960 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
61701981 GACGGCAAAG
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
20 9 0.12
21 23 0.32
23 41 0.56
ACGTcount: A:0.36, C:0.23, G:0.22, T:0.19
Consensus pattern (23 bp):
ATACGACACATAAAGTGCCTGAG
Found at i:61702153 original size:3 final size:3
Alignment explanation
Indices: 61702145--61702186 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
61702135 ATTCACACAT
61702145 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
61702187 CTTACCTCAC
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:61707388 original size:33 final size:32
Alignment explanation
Indices: 61707339--61707409 Score: 92
Period size: 32 Copynumber: 2.2 Consensus size: 32
61707329 CATGGATGTC
*
61707339 AAATTA-ATAATTAATTAATTTTTA-AAATTCAA
1 AAATTATATAATAAATT-ATTTTTATAAATT-AA
61707371 AAATTATATAATAAATTATTTTTATAAATTAA
1 AAATTATATAATAAATTATTTTTATAAATTAA
*
61707403 AATTTAT
1 AAATTAT
61707410 TAAACTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 21 0.60
33 14 0.40
ACGTcount: A:0.52, C:0.01, G:0.00, T:0.46
Consensus pattern (32 bp):
AAATTATATAATAAATTATTTTTATAAATTAA
Found at i:61712397 original size:21 final size:23
Alignment explanation
Indices: 61712373--61712419 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
61712363 ACAAAAATTA
61712373 CAAAAAATTC-AAAAT-AATTTT
1 CAAAAAATTCAAAAATAAATTTT
61712394 C-AAAAATTCAAAAATAAATTTT
1 CAAAAAATTCAAAAATAAATTTT
61712416 -AAAA
1 CAAAA
61712420 CTTAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
20 8 0.35
21 6 0.26
22 9 0.39
ACGTcount: A:0.62, C:0.09, G:0.00, T:0.30
Consensus pattern (23 bp):
CAAAAAATTCAAAAATAAATTTT
Found at i:61712398 original size:20 final size:20
Alignment explanation
Indices: 61712375--61712446 Score: 71
Period size: 21 Copynumber: 3.7 Consensus size: 20
61712365 AAAAATTACA
61712375 AAAAATTC-AAAATAATTTT
1 AAAAATTCAAAAATAATTTT
61712394 CAAAAATTCAAAAATAAATTTT
1 -AAAAATTCAAAAAT-AATTTT
* *
61712416 AAAACTT--AAAAT-ATTAT
1 AAAAATTCAAAAATAATTTT
*
61712433 AAAAATTCTAAAAT
1 AAAAATTCAAAAAT
61712447 TTAAATTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
17 10 0.22
19 10 0.22
20 8 0.18
21 11 0.24
22 6 0.13
ACGTcount: A:0.60, C:0.07, G:0.00, T:0.33
Consensus pattern (20 bp):
AAAAATTCAAAAATAATTTT
Found at i:61712469 original size:18 final size:18
Alignment explanation
Indices: 61712442--61712481 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
61712432 TAAAAATTCT
* *
61712442 AAAATTTAAATTTTTCAA
1 AAAATATAAAATTTTCAA
61712460 AAAATATAAAATTTTCAA
1 AAAATATAAAATTTTCAA
61712478 AAAA
1 AAAA
61712482 GTTTTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (18 bp):
AAAATATAAAATTTTCAA
Found at i:61712509 original size:19 final size:18
Alignment explanation
Indices: 61712485--61712527 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
61712475 CAAAAAAGTT
*
61712485 TTAAAA-ATTATAAAGAAAG
1 TTAAAACATT-TAAA-AAAA
61712504 TTAAAACATTTAAAAAAA
1 TTAAAACATTTAAAAAAA
61712522 TTAAAA
1 TTAAAA
61712528 TAATAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 9 0.41
19 10 0.45
20 3 0.14
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (18 bp):
TTAAAACATTTAAAAAAA
Found at i:61718767 original size:13 final size:13
Alignment explanation
Indices: 61718727--61718844 Score: 121
Period size: 13 Copynumber: 9.1 Consensus size: 13
61718717 ATGGAGTTGG
61718727 AAAGTGCTTTTGA
1 AAAGTGCTTTTGA
* * *
61718740 AAAGTACTATGGA
1 AAAGTGCTTTTGA
*
61718753 AAAGTGTTTTTGA
1 AAAGTGCTTTTGA
* * *
61718766 AAATTGCTGTGGA
1 AAAGTGCTTTTGA
61718779 AAAGTGCTTTTGA
1 AAAGTGCTTTTGA
*
61718792 GAAGTGCTTTTGA
1 AAAGTGCTTTTGA
*
61718805 GAAGTGCTTTTGA
1 AAAGTGCTTTTGA
*
61718818 GAAGTGCTTTT-A
1 AAAGTGCTTTTGA
*
61718830 AGAAGTACTTTTGA
1 A-AAGTGCTTTTGA
61718844 A
1 A
61718845 GTTTAAAATT
Statistics
Matches: 86, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
12 1 0.01
13 83 0.97
14 2 0.02
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (13 bp):
AAAGTGCTTTTGA
Found at i:61726559 original size:26 final size:26
Alignment explanation
Indices: 61726530--61726582 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
61726520 AAGGGAAAGA
*
61726530 AACCCAGGCTGCAACCAACTTCCTTG
1 AACCCAGGCTGCAACCAACTACCTTG
61726556 AACCCAGGCTGCAACCAACTACCTTG
1 AACCCAGGCTGCAACCAACTACCTTG
61726582 A
1 A
61726583 TGGATGGAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.38, G:0.15, T:0.17
Consensus pattern (26 bp):
AACCCAGGCTGCAACCAACTACCTTG
Found at i:61729677 original size:21 final size:21
Alignment explanation
Indices: 61729647--61729686 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
61729637 TTTTCATTTC
61729647 ATTTGAAAATATAAGTTACAA
1 ATTTGAAAATATAAGTTACAA
* * *
61729668 ATTTGGAAATGTCAGTTAC
1 ATTTGAAAATATAAGTTAC
61729687 CTAACTTTAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.42, C:0.07, G:0.15, T:0.35
Consensus pattern (21 bp):
ATTTGAAAATATAAGTTACAA
Found at i:61741072 original size:11 final size:11
Alignment explanation
Indices: 61741058--61741084 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
61741048 ATAATACTAA
61741058 AAATATTAATT
1 AAATATTAATT
61741069 AAATATTAATT
1 AAATATTAATT
61741080 AAATA
1 AAATA
61741085 ACATTTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAATATTAATT
Found at i:61741718 original size:20 final size:20
Alignment explanation
Indices: 61741695--61741746 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
61741685 AAAAATTACA
61741695 AAAAGTTCAAAATAATTTTC
1 AAAAGTTCAAAATAATTTTC
61741715 AAAAGTTCAAAATAATTTTC
1 AAAAGTTCAAAATAATTTTC
*
61741735 AAAAATTCAAAA
1 AAAAGTTCAAAA
61741747 ATAAAATTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.56, C:0.10, G:0.04, T:0.31
Consensus pattern (20 bp):
AAAAGTTCAAAATAATTTTC
Found at i:61741747 original size:21 final size:20
Alignment explanation
Indices: 61741693--61741823 Score: 94
Period size: 20 Copynumber: 6.4 Consensus size: 20
61741683 ACAAAAATTA
61741693 CAAAAAGTTCAAAATAATTTT
1 CAAAAA-TTCAAAATAATTTT
*
61741714 CAAAAGTTCAAAATAATTTT
1 CAAAAATTCAAAATAATTTT
*
61741734 CAAAAATTCAAAAATAAAATTT
1 CAAAAATTC-AAAAT-AATTTT
*
61741756 --AAAACTCAAAAT-ATTTAT
1 CAAAAATTCAAAATAATTT-T
61741774 -AAAAATTCTAAAATTTATATTTTT
1 CAAAAATTC-AAAA--TA-A-TTTT
* *
61741798 CAAAAAAT-ATAA-AATTTT
1 CAAAAATTCAAAATAATTTT
61741816 CAAAAATT
1 CAAAAATT
61741824 TTTTAAAAAA
Statistics
Matches: 90, Mismatches: 9, Indels: 25
0.73 0.07 0.20
Matches are distributed among these distances:
17 3 0.03
18 12 0.13
19 12 0.13
20 33 0.37
21 10 0.11
22 6 0.07
23 3 0.03
24 2 0.02
25 9 0.10
ACGTcount: A:0.55, C:0.08, G:0.02, T:0.35
Consensus pattern (20 bp):
CAAAAATTCAAAATAATTTT
Found at i:61741854 original size:20 final size:19
Alignment explanation
Indices: 61741829--61741871 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
61741819 AAATTTTTTA
*
61741829 AAAAAATTATAAAGAAAGTT
1 AAAAAATTATAAA-AAAATT
*
61741849 AAAAAATTTTAAAAAAATT
1 AAAAAATTATAAAAAAATT
61741868 AAAA
1 AAAA
61741872 TAATAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.26
Consensus pattern (19 bp):
AAAAAATTATAAAAAAATT
Found at i:61748268 original size:27 final size:27
Alignment explanation
Indices: 61748211--61748269 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 27
61748201 TTTTCTCCTA
*
61748211 TTTTT-CTATTTCACTCTCTTGTTTTT
1 TTTTTCCTATTTCAATCTCTTGTTTTT
61748237 TTTTTCCTATTTCAAT-T-TTGTTTCTT
1 TTTTTCCTATTTCAATCTCTTGTTT-TT
61748263 TCTTTTC
1 T-TTTTC
61748270 TTCCTATTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 6 0.21
26 9 0.31
27 14 0.48
ACGTcount: A:0.08, C:0.19, G:0.03, T:0.69
Consensus pattern (27 bp):
TTTTTCCTATTTCAATCTCTTGTTTTT
Found at i:61749940 original size:12 final size:12
Alignment explanation
Indices: 61749923--61749948 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
61749913 GAATATTATA
61749923 AGGAAGTTAGTC
1 AGGAAGTTAGTC
61749935 AGGAAGTTAGTC
1 AGGAAGTTAGTC
61749947 AG
1 AG
61749949 TTGTCAGTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.08, G:0.35, T:0.23
Consensus pattern (12 bp):
AGGAAGTTAGTC
Found at i:61751593 original size:21 final size:21
Alignment explanation
Indices: 61751569--61751610 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
61751559 CGTCGATCAC
61751569 CTTGCTCTTG-TGTCGTCACTG
1 CTTG-TCTTGATGTCGTCACTG
* *
61751590 CTTGTTTTGATGTTGTCACTG
1 CTTGTCTTGATGTCGTCACTG
61751611 ATCGGAGAAG
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.07, C:0.21, G:0.24, T:0.48
Consensus pattern (21 bp):
CTTGTCTTGATGTCGTCACTG
Found at i:61780982 original size:21 final size:21
Alignment explanation
Indices: 61780956--61780996 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
61780946 AGACGAGCAA
* *
61780956 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
61780977 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
61780997 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:61785767 original size:204 final size:204
Alignment explanation
Indices: 61785509--61785921 Score: 585
Period size: 204 Copynumber: 2.0 Consensus size: 204
61785499 TCCATTTACG
** * * * * * *
61785509 TTAACATAAACATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCATGTTGGCGCCATTGAGAAG
1 TTAACATAAACATCCAAGCTACCGGAGCCAACCTTAACGCAAATCACGTTGGCGCCAATGAGAAG
* * * *
61785574 ATATATCCTTTCATTCTCTTTCTCA-TCTACTATATCCGCCTCCTGCTGATTCATAGTAATAGTG
66 ATATATCCTTTCATTCTCTTTCTCAGT-TACAATATCCACCTCCTGCTGAGTCATAGTAATAGTA
* * *
61785638 ACCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGCCATCCGATTCCAC
130 ACCGAATCAGATTCGGATTTCACTTCCTGGTCCTCTTCGACAATGCAATTGCCACCCGATTCCAC
* **
61785703 TACTGCTCCA
195 AACAACTCCA
* *
61785713 TTAACATAAACATCTAAGCTACCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATGAGAAG
1 TTAACATAAACATCCAAGCTACCGGAGCCAACCTTAACGCAAATCACGTTGGCGCCAATGAGAAG
* * *
61785778 ATATCTCGTTTCATTCTCTTTCTCAGTTACAATATCCACCTCCTGCTGAGTCATAGTAATTGTAA
66 ATATATCCTTTCATTCTCTTTCTCAGTTACAATATCCACCTCCTGCTGAGTCATAGTAATAGTAA
* *
61785843 CCGAATCAGGTTCGGATTTCACTTCCTGGTCCTCTTCGACAATGCAATTGTCACCCGATTCCACA
131 CCGAATCAGATTCGGATTTCACTTCCTGGTCCTCTTCGACAATGCAATTGCCACCCGATTCCACA
61785908 ACAACTCCA
196 ACAACTCCA
61785917 TTAAC
1 TTAAC
61785922 GGAGTCGCTT
Statistics
Matches: 183, Mismatches: 25, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
204 182 0.99
205 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.15, T:0.31
Consensus pattern (204 bp):
TTAACATAAACATCCAAGCTACCGGAGCCAACCTTAACGCAAATCACGTTGGCGCCAATGAGAAG
ATATATCCTTTCATTCTCTTTCTCAGTTACAATATCCACCTCCTGCTGAGTCATAGTAATAGTAA
CCGAATCAGATTCGGATTTCACTTCCTGGTCCTCTTCGACAATGCAATTGCCACCCGATTCCACA
ACAACTCCA
Found at i:61786110 original size:228 final size:227
Alignment explanation
Indices: 61785713--61786939 Score: 1666
Period size: 228 Copynumber: 5.5 Consensus size: 227
61785703 TACTGCTCCA
** * * * * *
61785713 TTAACATAAACATCTAAGCTACCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATGAGAAG
1 TTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAG
* * *
61785778 ATATCTCGTTTCATTCTCTTTCTCAGTTACAATATCCACCTCCTGCTGAGTCATAGTAATTGTAA
66 ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATAGTAATAGTAA
* * * *
61785843 CCGAATCAGGTTCGGATTTCACTTCCTGGTCCTCTTCGACAATGCAATTGTCACCCGATTCCACA
131 CCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATTCCACT
* *
61785908 ACAACTCCATTAACGGAGTCGCTTCCATTTACG
196 ACAACTCCATTAACGGAGTCG-TTCCATCTAGG
* * * *
61785941 TTAACATAAATATCCGTGCTGCCGGTGCCAACCTTAACTCTACTCGTGTTGGCGCCATTGAGAAG
1 TTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAG
* * * * *
61786006 ATGTCTCGTTTCATTCTCTTTCTCATCTACTATATCCGCCTCCTGCTGATTCATAGTAATAGTGA
66 ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATAGTAATAGTAA
* * * *
61786071 CCGAATCAGATTCGGATTTCACTTCGTGGTTTTCTTCGACAATGCAATTGCCATCTGATTCCACT
131 CCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATTCCACT
* * *
61786136 ACAGCTCCATTAACAGAGTCGTT---TCCA--
196 ACAACTCCATTAACGGAGTCGTTCCATCTAGG
* * * * * * * *
61786163 TTAACATAGACATCTGAGCTGCCAGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATAAGAAG
1 TTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAG
* *
61786228 ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAATTGTAA
66 ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATAGTAATAGTAA
*
61786293 CCGAATCAGATTCGGATTTCACTTCGTGTTCTTCTTCGACAATGCAATTGTCACCCGATTCCACT
131 CCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATTCCACT
61786358 ACAACTCCATTAACGGAGTCGTTGCCATCTAGG
196 ACAACTCCATTAACGGAGTCGTT-CCATCTAGG
* * *** *
61786391 TTAGCATAAGCATCCGAGCCATCGGAGCCAACGTTAACGCTACTCGTGTTGGCGCCATTGAGAAG
1 TTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAG
*
61786456 ATATCTCGTTTCATTCTGTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATAGTAATAGTAA
66 ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATAGTAATAGTAA
* * * *
61786521 CCGAATCAGATTCGGATTGCACTTCATGGTCTTCTTCGACAATGCAATTGTCTCCCGGTTCCACT
131 CCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATTCCACT
61786586 ACAACTCCATTAACGGAGTCGTTCCCATCTAGG
196 ACAACTCCATTAACGGAGTCGTT-CCATCTAGG
* *
61786619 TTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTGCTCATGTTGGCGCCATTGAGAAG
1 TTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAG
61786684 ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATAGTAATAGTAA
66 ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATAGTAATAGTAA
* * * *
61786749 CCGAATCAGATTCGG-TTGGCACTTCGTGGTCTTCTTCGACAATGCAATTGCCATCCGATTCCAT
131 CCGAATCAGATTCGGATT-TCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATTCCAC
* *
61786813 TACAACTCCATTATCGGAGTCGTT---TCCA--
195 TACAACTCCATTAACGGAGTCGTTCCATCTAGG
* * *
61786841 TTAACATAAACATCCGAGCTCCCGGAACCAACCTTAACGCAACTC------GCG---TTGAGAAG
1 TTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAG
* * *
61786897 ATATTTCTTTTCATTCCCTTTCTCAGCTACAATATCCACCTCC
66 ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCC
61786940 GCGGCTACAT
Statistics
Matches: 887, Mismatches: 105, Indels: 29
0.87 0.10 0.03
Matches are distributed among these distances:
213 48 0.05
216 3 0.00
222 233 0.26
224 5 0.01
226 3 0.00
227 4 0.00
228 591 0.67
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (227 bp):
TTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAG
ATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATAGTAATAGTAA
CCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATTCCACT
ACAACTCCATTAACGGAGTCGTTCCATCTAGG
Found at i:61786558 original size:450 final size:450
Alignment explanation
Indices: 61785708--61786939 Score: 1726
Period size: 450 Copynumber: 2.8 Consensus size: 450
61785698 TCCACTACTG
* *
61785708 CTCCATTAACATAAACATCTAAGCTACCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATG
1 CTCCATTAACATAAACATCTGAGCTGCCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATG
*
61785773 AGAAGATATCTCGTTTCATTCTCTTTCTCAGTTACAATATCCACCTCCTGCTGAGTCATAGTAAT
66 AGAAGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAAT
* * *
61785838 TGTAACCGAATCAGGTTCGGATTTCACTTCCTGGTCCTCTTCGACAATGCAATTGTCACCCGATT
131 TGTAACCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATT
* * * * ** *
61785903 CCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAATATCCGTGCTGCCGGTG
196 CCACTACAACTCCATTAACGGAGTCG-TTCCATCTACGTTAACATAAACATCCGAGCCACCGGAG
* * *
61785968 CCAACCTTAACTCTACTCGTGTTGGCGCCATTGAGAAGATGTCTCGTTTCATTCTCTTTCTCATC
260 CCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTTTCATTCTCTTTCTCAGC
* * * * *
61786033 TACTATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGATTCGGATTTCACTTCGT
325 TACAATATCCACCTCCTGCTGATTCATAGTAATAGTAACCGAATCAGATTCGGATTGCACTTCAT
* * *
61786098 GGTTTTCTTCGACAATGCAATTGCCAT-CTGATTCCACTACAGCTCCATTAACAGAGTCGTT
390 GGTCTTCTTCGACAATGCAATTGCC-TCCCGATTCCACTACAACTCCATTAACAGAGTCGTT
* * *
61786159 -TCCATTAACATAGACATCTGAGCTGCCAGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATA
1 CTCCATTAACATAAACATCTGAGCTGCCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATG
61786223 AGAAGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAAT
66 AGAAGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAAT
*
61786288 TGTAACCGAATCAGATTCGGATTTCACTTCGTGTTCTTCTTCGACAATGCAATTGTCACCCGATT
131 TGTAACCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATT
* * * *
61786353 CCACTACAACTCCATTAACGGAGTCGTTGCCATCTAGGTTAGCATAAGCATCCGAGCCATCGGAG
196 CCACTACAACTCCATTAACGGAGTCGTT-CCATCTACGTTAACATAAACATCCGAGCCACCGGAG
* *
61786418 CCAACGTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTTTCATTCTGTTTCTCAGC
260 CCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTTTCATTCTCTTTCTCAGC
61786483 TACAATATCCACCTCCTGCTGATTCATAGTAATAGTAACCGAATCAGATTCGGATTGCACTTCAT
325 TACAATATCCACCTCCTGCTGATTCATAGTAATAGTAACCGAATCAGATTCGGATTGCACTTCAT
* * *
61786548 GGTCTTCTTCGACAATGCAATTGTCTCCCGGTTCCACTACAACTCCATTAACGGAGTCGTT
390 GGTCTTCTTCGACAATGCAATTGCCTCCCGATTCCACTACAACTCCATTAACAGAGTCGTT
* * *** **
61786609 CCCATCTAGGTTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCTGCTCATGTTGGCGC
1 --C-TCCA--TTAACATAAACATCTGAGCTGCCGGAGCCAACCTTAACGCAAATCGCGTTGGCGC
* *
61786674 CATTGAGAAGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGATTCATA
61 CAATGAGAAGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATA
* * * *
61786739 GTAATAGTAACCGAATCAGATTCGG-TTGGCACTTCGTGGTCTTCTTCGACAATGCAATTGCCAT
126 GTAATTGTAACCGAATCAGATTCGGATT-TCACTTCGTGGTCTTCTTCGACAATGCAATTGTCAC
* * *
61786803 CCGATTCCATTACAACTCCATTATCGGAGTCGTT---TC--CATTAACATAAACATCCGAGCTC-
190 CCGATTCCACTACAACTCCATTAACGGAGTCGTTCCATCTACGTTAACATAAACATCCGAGC-CA
* * * * *
61786862 CCGGAACCAACCTTAACGCAACTC------GCG---TTGAGAAGATATTTCTTTTCATTCCCTTT
254 CCGGAGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTTTCATTCTCTTT
61786918 CTCAGCTACAATATCCACCTCC
319 CTCAGCTACAATATCCACCTCC
61786940 GCGGCTACAT
Statistics
Matches: 703, Mismatches: 68, Indels: 30
0.88 0.08 0.04
Matches are distributed among these distances:
441 47 0.07
444 3 0.00
449 3 0.00
450 445 0.63
451 1 0.00
452 2 0.00
454 3 0.00
455 2 0.00
456 197 0.28
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.30
Consensus pattern (450 bp):
CTCCATTAACATAAACATCTGAGCTGCCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATG
AGAAGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAAT
TGTAACCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCACCCGATT
CCACTACAACTCCATTAACGGAGTCGTTCCATCTACGTTAACATAAACATCCGAGCCACCGGAGC
CAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTTTCATTCTCTTTCTCAGCT
ACAATATCCACCTCCTGCTGATTCATAGTAATAGTAACCGAATCAGATTCGGATTGCACTTCATG
GTCTTCTTCGACAATGCAATTGCCTCCCGATTCCACTACAACTCCATTAACAGAGTCGTT
Found at i:61787798 original size:176 final size:174
Alignment explanation
Indices: 61787469--61787821 Score: 431
Period size: 176 Copynumber: 2.0 Consensus size: 174
61787459 ATTCACTTTG
* * * *
61787469 GTTTCAATTCAGTCATTCAACTTTTAAAAAATAACAAAACAATCACTAATGTTATCAAAAAGTGA
1 GTTTCAATTCAGCCACTCAACTTTCAAAAAATAACAAAACAATCACTAACGTTATCAAAAAGTGA
* * ** * *
61787534 CAAAATAGTCACCCATTAACATTTTCTGTTACAGGCCTAACGGGACAGGTGATGTGGCCAGTTAA
66 CAAAATAGTCACCCATTAACATTTTCTGTTACAGACCTAACGAGACAGGTGACATGACCAGTAAA
* * * * *
61787599 CTAGCTGACGTAGCCAGTTAACTTGCCACGTTGGATGAGGCTAA
131 CTAGCTAACGTAGCCAATTAACTTGCCACGTTAGACGAGGCAAA
* *
61787643 GTTTCAATTCAGCCACTCAACTTTACAAAAAATTAACAAATCAGTCACTAACGTTATCAAAAAGT
1 GTTTCAATTCAGCCACTCAACTTT-CAAAAAA-TAACAAAACAATCACTAACGTTATCAAAAAGT
* * * *
61787708 GACAAATTAGTCACCCATTAACATTTT-TGGTTATAGACCTAACGAGACAGGTGGCATGACTAGT
64 GACAAAATAGTCACCCATTAACATTTTCT-GTTACAGACCTAACGAGACAGGTGACATGACCAGT
* * **
61787772 AAATTAGCTAATGT-GATTAATTAACTTGCCACGTTAGACGAGGCAAA
128 AAACTAGCTAACGTAG-CCAATTAACTTGCCACGTTAGACGAGGCAAA
61787819 GTT
1 GTT
61787822 GAGTGACTAT
Statistics
Matches: 150, Mismatches: 25, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
174 22 0.15
175 8 0.05
176 120 0.80
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28
Consensus pattern (174 bp):
GTTTCAATTCAGCCACTCAACTTTCAAAAAATAACAAAACAATCACTAACGTTATCAAAAAGTGA
CAAAATAGTCACCCATTAACATTTTCTGTTACAGACCTAACGAGACAGGTGACATGACCAGTAAA
CTAGCTAACGTAGCCAATTAACTTGCCACGTTAGACGAGGCAAA
Found at i:61787893 original size:29 final size:29
Alignment explanation
Indices: 61787855--61787911 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
61787845 TCCTTTTTCA
* *
61787855 TTTTTTCATAAATGTCCCAATATCTTTAC
1 TTTTTGCATAAATGGCCCAATATCTTTAC
*
61787884 TTTTTGCATAAATGGCCCAATATGTTTA
1 TTTTTGCATAAATGGCCCAATATCTTTA
61787912 TACTTCTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.28, C:0.18, G:0.09, T:0.46
Consensus pattern (29 bp):
TTTTTGCATAAATGGCCCAATATCTTTAC
Found at i:61799459 original size:23 final size:23
Alignment explanation
Indices: 61799429--61799474 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
61799419 CGCTTATCTT
*
61799429 CATGTTGAGCTGCTGCTAGTCTC
1 CATGTTGAACTGCTGCTAGTCTC
*
61799452 CATGTTGAACTGCTGCTGGTCTC
1 CATGTTGAACTGCTGCTAGTCTC
61799475 TTGTTGCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.13, C:0.26, G:0.26, T:0.35
Consensus pattern (23 bp):
CATGTTGAACTGCTGCTAGTCTC
Found at i:61815931 original size:27 final size:27
Alignment explanation
Indices: 61815901--61815968 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
61815891 AAGGGAACAC
61815901 TGTTGGCGGCACCAAACAAGGAAACCT
1 TGTTGGCGGCACCAAACAAGGAAACCT
**
61815928 TGTTGGCGGCACCAAACAAGGATTCCT
1 TGTTGGCGGCACCAAACAAGGAAACCT
61815955 TGTTGGCGGCACCA
1 TGTTGGCGGCACCA
61815969 CCTTAAATAT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.19
Consensus pattern (27 bp):
TGTTGGCGGCACCAAACAAGGAAACCT
Found at i:61816811 original size:28 final size:27
Alignment explanation
Indices: 61816780--61816846 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 27
61816770 ATAAAAAATT
*
61816780 ACCAAAATATTATAACTTTTTTTTATTG
1 ACCAAAATATTATAA-TTTTTATTATTG
* *
61816808 ACCAAAAAATATATAATTTTTATTATTT
1 ACCAAAATAT-TATAATTTTTATTATTG
61816836 ACCAAAATATT
1 ACCAAAATATT
61816847 TCAAAAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
27 1 0.03
28 28 0.82
29 5 0.15
ACGTcount: A:0.43, C:0.10, G:0.01, T:0.45
Consensus pattern (27 bp):
ACCAAAATATTATAATTTTTATTATTG
Found at i:61816870 original size:17 final size:17
Alignment explanation
Indices: 61816848--61816881 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
61816838 CAAAATATTT
61816848 CAAAAAA-AAGTAAAAAA
1 CAAAAAAGAA-TAAAAAA
61816865 CAAAAAAGAATAAAAAA
1 CAAAAAAGAATAAAAAA
61816882 AAGGAAAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 14 0.88
18 2 0.12
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (17 bp):
CAAAAAAGAATAAAAAA
Found at i:61819086 original size:18 final size:18
Alignment explanation
Indices: 61819060--61819097 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
61819050 ATCCCAATGA
*
61819060 TCGCCACCACCTTCTTCT
1 TCGCAACCACCTTCTTCT
61819078 TCGCAACCACCTTCTTCT
1 TCGCAACCACCTTCTTCT
61819096 TC
1 TC
61819098 ACCACCAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.13, C:0.47, G:0.05, T:0.34
Consensus pattern (18 bp):
TCGCAACCACCTTCTTCT
Found at i:61819104 original size:18 final size:18
Alignment explanation
Indices: 61819063--61819104 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
61819053 CCAATGATCG
*
61819063 CCACCACCTTCTTCTTCG
1 CCACCACCTTCTTCTTCA
*
61819081 CAACCACCTTCTTCTTCA
1 CCACCACCTTCTTCTTCA
61819099 CCACCA
1 CCACCA
61819105 ACCATATCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.50, G:0.02, T:0.29
Consensus pattern (18 bp):
CCACCACCTTCTTCTTCA
Found at i:61819830 original size:61 final size:62
Alignment explanation
Indices: 61819719--61819836 Score: 161
Period size: 61 Copynumber: 1.9 Consensus size: 62
61819709 CCACTAATCC
* *
61819719 TAATAACTAACACAATAATAATATTAATAATTTTATATACAAAATAATACTAACTAAAATTAT
1 TAATAACTAACACAAAAATAATACTAAT-ATTTTATATACAAAATAATACTAACTAAAATTAT
*
61819782 TAATAACTAACTACAAAAATAATACTAAT-TTTT-TACTA-ACAATAATACTAACTAA
1 TAATAACTAAC-ACAAAAATAATACTAATATTTTATA-TACAAAATAATACTAACTAA
61819837 CATCTTAATA
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
61 18 0.36
62 6 0.12
63 11 0.22
64 15 0.30
ACGTcount: A:0.54, C:0.12, G:0.00, T:0.34
Consensus pattern (62 bp):
TAATAACTAACACAAAAATAATACTAATATTTTATATACAAAATAATACTAACTAAAATTAT
Found at i:61819850 original size:3 final size:3
Alignment explanation
Indices: 61819842--61819867 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
61819832 ACTAACATCT
61819842 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
61819868 CTATAAAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:61820258 original size:27 final size:27
Alignment explanation
Indices: 61820156--61820249 Score: 152
Period size: 27 Copynumber: 3.5 Consensus size: 27
61820146 AACACGAGTA
61820156 GTGCCGCCAACAGGGAACCCTTGTTTG
1 GTGCCGCCAACAGGGAACCCTTGTTTG
61820183 GTGCCGCCAACAGGGAACCCTTGTTTG
1 GTGCCGCCAACAGGGAACCCTTGTTTG
* ** *
61820210 GTGCCGTCAACAGGGTTCCCTTCTTTG
1 GTGCCGCCAACAGGGAACCCTTGTTTG
61820237 GTGCCGCCAACAG
1 GTGCCGCCAACAG
61820250 TGTTCCCTTG
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.23
Consensus pattern (27 bp):
GTGCCGCCAACAGGGAACCCTTGTTTG
Found at i:61820362 original size:27 final size:29
Alignment explanation
Indices: 61820332--61820400 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 29
61820322 GGTTTTTTTG
61820332 ATATATTTTGGTAAAT-AAAAAAAT-TAT
1 ATATATTTTGGTAAATAAAAAAAATGTAT
*
61820359 ATATTTTTTGGTAAATAAAAAAAATGTAT
1 ATATATTTTGGTAAATAAAAAAAATGTAT
*
61820388 A-ACATTTTGGTAA
1 ATATATTTTGGTAA
61820401 TTTTTTTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 15 0.41
28 18 0.49
29 4 0.11
ACGTcount: A:0.48, C:0.01, G:0.10, T:0.41
Consensus pattern (29 bp):
ATATATTTTGGTAAATAAAAAAAATGTAT
Found at i:61829187 original size:33 final size:33
Alignment explanation
Indices: 61829147--61829221 Score: 141
Period size: 33 Copynumber: 2.3 Consensus size: 33
61829137 CTGAAGAAAG
*
61829147 AAAATGTTGCTTGATCAACAAGGAAACAACCGA
1 AAAATGTTGCTTGATCAACAAGGAAACAACCAA
61829180 AAAATGTTGCTTGATCAACAAGGAAACAACCAA
1 AAAATGTTGCTTGATCAACAAGGAAACAACCAA
61829213 AAAATGTTG
1 AAAATGTTG
61829222 ATACTTAAGG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.47, C:0.16, G:0.17, T:0.20
Consensus pattern (33 bp):
AAAATGTTGCTTGATCAACAAGGAAACAACCAA
Found at i:61832006 original size:222 final size:223
Alignment explanation
Indices: 61831603--61832076 Score: 626
Period size: 222 Copynumber: 2.1 Consensus size: 223
61831593 AGTAACTTTG
* * * *
61831603 TGGTCTTCTTCGACAATACAATTGTCACCCAATTCCACTACAACTCCATTAACGGGGTCGCTTCT
1 TGGTCTTCTTCGACAATGCAATTGCCACCCAATTCCACTACAACTCCATTAACAGAGTCG----T
* * * * * * * *
61831668 ATTTACGTTAACATAAACATCCGTGCTGCCGGTGCCAACCTTAACTCTACTCGTGTTGGCGCCAT
62 -TTTACATTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAA
* * * * *
61831733 TGAGAAGATATCTCGTTTCATTCTCTTTCTCATCTACTATATCCGCCTCCTGGTGATTCATAGTA
126 TGAGAAGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTA
* *
61831798 ATAGTGACCGAATCAGATTCGGATTTCACTTCA
191 ATAGTAACCGAATCAGATTCAGATTTCACTTCA
* ** * *
61831831 TGGTCTTCTTCGACAATGCAATTGCCATCTGATTCCACTACAGCTCCATTAACAGAGTCG-TTTC
1 TGGTCTTCTTCGACAATGCAATTGCCACCCAATTCCACTACAACTCCATTAACAGAGTCGTTTTA
* * * *
61831895 CATTAACATAGACATCTGAGCTGCCGGAGCTAACCTTAACGCAAATGGCGTTGGCGCCAATGAGA
66 CATTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATGAGA
*
61831960 AGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAATTGT
131 AGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAATAGT
*
61832025 AACCGAATCAGATTCAGATTTCACTTCG
196 AACCGAATCAGATTCAGATTTCACTTCA
61832053 TGGTCTTCTTCGACAATGCAATTG
1 TGGTCTTCTTCGACAATGCAATTG
61832077 TTGGAACAAA
Statistics
Matches: 216, Mismatches: 30, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
222 164 0.76
228 52 0.24
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (223 bp):
TGGTCTTCTTCGACAATGCAATTGCCACCCAATTCCACTACAACTCCATTAACAGAGTCGTTTTA
CATTAACATAAACATCCGAGCTGCCGGAGCCAACCTTAACGCAAATCGCGTTGGCGCCAATGAGA
AGATATCTCGTTTCATTCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAATAGT
AACCGAATCAGATTCAGATTTCACTTCA
Found at i:61833713 original size:21 final size:21
Alignment explanation
Indices: 61833681--61833721 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
61833671 AGGCTCGAGG
61833681 GGCCTATTTTAGGCC-ATACAA
1 GGCCTATTTTA-GCCTATACAA
61833702 GGCCT-TTCTTAGCCTATACA
1 GGCCTATT-TTAGCCTATACA
61833722 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.32
Consensus pattern (21 bp):
GGCCTATTTTAGCCTATACAA
Found at i:61837754 original size:228 final size:228
Alignment explanation
Indices: 61837128--61838177 Score: 1613
Period size: 228 Copynumber: 4.7 Consensus size: 228
61837118 AAACTTAACA
61837128 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
1 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
61837193 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
66 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
61837258 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
131 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
61837323 TTCGGATTTCACTTCGTGGTCTTCTTCGACAAT
196 TTCGGATTTCACTTCGTGGTCTTCTTCGACAAT
* * * * *
61837356 GCAATTGCCATCCGATTCCACTACAACTCCATTAACAGAGTCGTTTCC----A--TTAACATAAA
1 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
* * * * * ** *
61837415 CATCTGAGCTGCCGGTGCCAAGCTTAACGCAAATCGCATTGGCGCCAATGAGAAGATATCTCGTT
66 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
* * * * * * *
61837480 TCATCCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTCATAGTAATTGTAACCGAATCAGA
131 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
*
61837545 TTCGGATTTCACTTCGTGGTCCTCTTCGACAAT
196 TTCGGATTTCACTTCGTGGTCTTCTTCGACAAT
61837578 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
1 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
61837643 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
66 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
* *
61837708 TCATTCTCATTCTCATCTACTATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
131 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
*
61837773 TTCAGATTTCACTTCGTGGTCTTCTTCGACAAT
196 TTCGGATTTCACTTCGTGGTCTTCTTCGACAAT
*
61837806 GCAATTGTCACCTGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
1 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
* *
61837871 CATCCGTACTGCTGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
66 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
61837936 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
131 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
61838001 TTCGGATTTCACTTCGTGGTCTTCTTCGACAAT
196 TTCGGATTTCACTTCGTGGTCTTCTTCGACAAT
* * * * * **
61838034 GCAATTGCCATCCGATTCCACTAGAACTCCATTAACGGAGTCGTTTCC----A--TTAACATCGA
1 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
* * * * * * *
61838093 CATCCGAGCTACCGGAGCCAACCTTAACGCAACTCACT-TTGGCGCTATTGAGAAGATATCTCTT
66 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTC-GTGTTGGCGCCATTGAGAAGATATCTCGT
* *
61838157 TTCATTGTCTTTCTCAGCTAC
130 TTCATTCTCTTTCTCATCTAC
61838178 AACATCCACG
Statistics
Matches: 746, Mismatches: 69, Indels: 20
0.89 0.08 0.02
Matches are distributed among these distances:
222 280 0.38
223 1 0.00
224 2 0.00
226 1 0.00
228 462 0.62
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (228 bp):
GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
TTCGGATTTCACTTCGTGGTCTTCTTCGACAAT
Found at i:61838089 original size:450 final size:446
Alignment explanation
Indices: 61837128--61838177 Score: 1561
Period size: 450 Copynumber: 2.3 Consensus size: 446
61837118 AAACTTAACA
61837128 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
1 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCC---TAC-TTAACATAAA
61837193 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
62 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
61837258 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
127 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
* *
61837323 TTCGGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGCCATCCGATTCCACTACAACTCCAT
192 TTCAGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGCCATCCGATTCCACAACAACTCCAT
* * *
61837388 TAACAGAGTCGTTTCCATTAACATAAACATCTGAGCTGCCGGTGCCAAGCTTAACGCAAATCGCA
257 TAACAGAGTCGCTTCCATTAACATAAACATCCGAGCTGCCGGTGCCAACCTTAACGCAAATCGCA
61837453 TTGGCGCCAATGAGAAGATATCTCGTTTCATCCTCTTTCTCAGCTACAATATCCACCTCCTGCTG
322 TTGGCGCCAATGAGAAGATATCTCGTTTCATCCTCTTTCTCAGCTACAATATCCACCTCCTGCTG
*
61837518 AGTCATAGTAATTGTAACCGAATCAGATTCGGATTTCACTTCGTGGTCCTCTTCGACAAT
387 AGTCATAGTAATAGTAACCGAATCAGATTCGGATTTCACTTCGTGGTCCTCTTCGACAAT
61837578 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCATTTACGTTAACATAAA
1 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCC---TAC-TTAACATAAA
61837643 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
62 CATCCGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTT
* *
61837708 TCATTCTCATTCTCATCTACTATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
127 TCATTCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGA
*
61837773 TTCAGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGTCA-CCTGATTCCACAACAACTCCA
192 TTCAGATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGCCATCC-GATTCCACAACAACTCCA
* *
61837837 TTAACGGAGTCGCTTCCATTTACGTTAACATAAACATCCGTA-CTGCTGGTGCCAACCTTAACGC
256 TTAACAGAGTCGCTTCC----A--TTAACATAAACATCCG-AGCTGCCGGTGCCAACCTTAACGC
* * ** * * * * *
61837901 TACTCGTGTTGGCGCCATTGAGAAGATATCTCGTTTCATTCTCTTTCTCATCTACCATATCCGCC
314 AAATCGCATTGGCGCCAATGAGAAGATATCTCGTTTCATCCTCTTTCTCAGCTACAATATCCACC
* * *
61837966 TCCTGCTGATTCATAGTAATAGTGACCGAATCAGATTCGGATTTCACTTCGTGGTCTTCTTCGAC
379 TCCTGCTGAGTCATAGTAATAGTAACCGAATCAGATTCGGATTTCACTTCGTGGTCCTCTTCGAC
61838031 AAT
444 AAT
* * * * * **
61838034 GCAATTGCCATCCGATTCCACTAGAACTCCATTAACGGAGTCGTTTCC-A-TTAACATCGACATC
1 GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCTACTTAACATAAACATC
* * * * * * *
61838097 CGAGCTACCGGAGCCAACCTTAACGCAACTCACT-TTGGCGCTATTGAGAAGATATCTCTTTTCA
66 CGTGCTGCCGGTGCCAACCTTAACGCTACTC-GTGTTGGCGCCATTGAGAAGATATCTCGTTTCA
* *
61838161 TTGTCTTTCTCAGCTAC
130 TTCTCTTTCTCATCTAC
61838178 AACATCCACG
Statistics
Matches: 551, Mismatches: 40, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
449 2 0.00
450 347 0.63
451 1 0.00
452 1 0.00
454 1 0.00
456 198 0.36
457 1 0.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (446 bp):
GCAATTGTCACCCGATTCCACAACAACTCCATTAACGGAGTCGCTTCCTACTTAACATAAACATC
CGTGCTGCCGGTGCCAACCTTAACGCTACTCGTGTTGGCGCCATTGAGAAGATATCTCGTTTCAT
TCTCTTTCTCATCTACCATATCCGCCTCCTGCTGATTCATAGTAATAGTGACCGAATCAGATTCA
GATTTCACTTCGTGGTCTTCTTCGACAATGCAATTGCCATCCGATTCCACAACAACTCCATTAAC
AGAGTCGCTTCCATTAACATAAACATCCGAGCTGCCGGTGCCAACCTTAACGCAAATCGCATTGG
CGCCAATGAGAAGATATCTCGTTTCATCCTCTTTCTCAGCTACAATATCCACCTCCTGCTGAGTC
ATAGTAATAGTAACCGAATCAGATTCGGATTTCACTTCGTGGTCCTCTTCGACAAT
Found at i:61838979 original size:20 final size:20
Alignment explanation
Indices: 61838954--61838999 Score: 60
Period size: 20 Copynumber: 2.3 Consensus size: 20
61838944 AAACCCTAAA
61838954 TTCAAGA-TTAGGATTC-GAGG
1 TTCAAGATTTAGG-TTCTG-GG
61838974 TTCAAGATTTAGGTTCTGGG
1 TTCAAGATTTAGGTTCTGGG
61838994 TTCAAG
1 TTCAAG
61839000 GTTCGAGGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.26, C:0.11, G:0.28, T:0.35
Consensus pattern (20 bp):
TTCAAGATTTAGGTTCTGGG
Found at i:61839036 original size:29 final size:29
Alignment explanation
Indices: 61838981--61839036 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
61838971 AGGTTCAAGA
*
61838981 TTTAGGTTCTGGGTTCAAGGTTCGAGGGG
1 TTTAGGTTCTGGGTTCAAGATTCGAGGGG
* * *
61839010 TTTAGGTTCTGTGTTCGAGATTTGAGG
1 TTTAGGTTCTGGGTTCAAGATTCGAGG
61839037 TTAAAGGTTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.14, C:0.09, G:0.38, T:0.39
Consensus pattern (29 bp):
TTTAGGTTCTGGGTTCAAGATTCGAGGGG
Found at i:61839073 original size:21 final size:21
Alignment explanation
Indices: 61839043--61839095 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
61839033 GAGGTTAAAG
*
61839043 GTTTAGGGTTCAGAATTTGAT
1 GTTTAAGGTTCAGAATTTGAT
* * *
61839064 GTTTATGGTTTAGGATTTGAT
1 GTTTAAGGTTCAGAATTTGAT
61839085 GTTTAAGGTTC
1 GTTTAAGGTTC
61839096 GGGGGTTCAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.04, G:0.28, T:0.47
Consensus pattern (21 bp):
GTTTAAGGTTCAGAATTTGAT
Found at i:61854165 original size:18 final size:18
Alignment explanation
Indices: 61854138--61854230 Score: 141
Period size: 18 Copynumber: 5.2 Consensus size: 18
61854128 TACGACCGTT
61854138 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* *
61854156 TACGGCACTATTTACGTA
1 TACGGTACTATTCACGTA
61854174 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
* * *
61854192 TATGGCACTATTCACGGA
1 TACGGTACTATTCACGTA
61854210 TACGGTACTATTCACGTA
1 TACGGTACTATTCACGTA
61854228 TAC
1 TAC
61854231 AGTAGTTGGG
Statistics
Matches: 65, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (18 bp):
TACGGTACTATTCACGTA
Found at i:61854185 original size:36 final size:36
Alignment explanation
Indices: 61854138--61854230 Score: 159
Period size: 36 Copynumber: 2.6 Consensus size: 36
61854128 TACGACCGTT
* *
61854138 TACGGTACTATTCACGTATACGGCACTATTTACGTA
1 TACGGTACTATTCACGTATACGGCACTATTCACGGA
*
61854174 TACGGTACTATTCACGTATATGGCACTATTCACGGA
1 TACGGTACTATTCACGTATACGGCACTATTCACGGA
61854210 TACGGTACTATTCACGTATAC
1 TACGGTACTATTCACGTATAC
61854231 AGTAGTTGGG
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (36 bp):
TACGGTACTATTCACGTATACGGCACTATTCACGGA
Found at i:61864298 original size:21 final size:21
Alignment explanation
Indices: 61864274--61864313 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
61864264 TAAACATTAA
**
61864274 ATTTTTTAAATTTATTTATGT
1 ATTTTTTAAAAATATTTATGT
61864295 ATTTTTTAAAAATATTTAT
1 ATTTTTTAAAAATATTTAT
61864314 TTAAATCCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
ATTTTTTAAAAATATTTATGT
Found at i:61864554 original size:3 final size:3
Alignment explanation
Indices: 61864546--61864585 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
61864536 AAAATAAAAT
61864546 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
61864586 AGAAAAGATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:61867518 original size:21 final size:21
Alignment explanation
Indices: 61867486--61867526 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
61867476 AGGCTCGAGG
61867486 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
61867507 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
61867527 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:61887622 original size:26 final size:24
Alignment explanation
Indices: 61887591--61887667 Score: 75
Period size: 26 Copynumber: 3.1 Consensus size: 24
61887581 GAGAATAGGA
61887591 AGGAAAGAAATAAATAAAATTGAAAT
1 AGGAAAGAAATAAA-AAAA-TGAAAT
* * *
61887617 AGGAAAGAATTAAAAAAAGGAAAA
1 AGGAAAGAAATAAAAAAATGAAAT
*
61887641 AGG-AAGAAAAAAAAGAAAGTGAAAT
1 AGGAAAGAAATAAAA-AAA-TGAAAT
61887666 AG
1 AG
61887668 CAAAATGAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
23 9 0.21
24 10 0.24
25 10 0.24
26 13 0.31
ACGTcount: A:0.68, C:0.00, G:0.21, T:0.12
Consensus pattern (24 bp):
AGGAAAGAAATAAAAAAATGAAAT
Found at i:61888502 original size:3 final size:3
Alignment explanation
Indices: 61888494--61888541 Score: 78
Period size: 3 Copynumber: 16.0 Consensus size: 3
61888484 AAATGTGAGG
* *
61888494 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TTA TCA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
61888542 AAATGAGTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:61890534 original size:12 final size:12
Alignment explanation
Indices: 61890517--61890542 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
61890507 CAAAACAGGC
61890517 TTTTAGCGGCGT
1 TTTTAGCGGCGT
61890529 TTTTAGCGGCGT
1 TTTTAGCGGCGT
61890541 TT
1 TT
61890543 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:61890913 original size:114 final size:114
Alignment explanation
Indices: 61890611--61890977 Score: 535
Period size: 114 Copynumber: 3.2 Consensus size: 114
61890601 AAAATAAGCA
* * * *
61890611 TTAGCGGCGTTTTTGAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACG-TCGTTTCTCGAGCT
1 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCT-GTTTTTTGAGCT
* *
61890674 TTCGGGGATTTAGAGGCGTTTATAAGAAAGCGCCGCTAATGCTCAGGGCT
65 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
61890724 TTAGCGGCATTTTTGGG-AAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTT
1 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTGTTTTTTGAGCTT
* * *
61890788 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAGTGCTCGGGGTT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
*
61890837 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTGTTTTTTAAGCTT
1 TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTGTTTTTTGAGCTT
* * *
61890902 TCGGAGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGC-CTAGGACT
66 TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTC-AGGGCT
* *
61890951 TTAGCGGCGTTTTTGGTAAAGCGCCGC
1 TTAGCGGCATTTTTGGGAAAGCGCCGC
61890978 TAATGCCCAG
Statistics
Matches: 228, Mismatches: 22, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
112 9 0.04
113 109 0.48
114 110 0.48
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (114 bp):
TTAGCGGCATTTTTGGGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCTGTTTTTTGAGCTT
TCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:61890973 original size:41 final size:40
Alignment explanation
Indices: 61890909--61891018 Score: 150
Period size: 41 Copynumber: 2.7 Consensus size: 40
61890899 CTTTCGGAGA
*
61890909 TTTAGCGGCGTTTTTAAGG-AAGCGCCGCTAATGCCTAGGAC
1 TTTAGCGGCGTTTTT--GGAAAGCGCCGCTAATGCCCAGGAC
*
61890950 TTTAGCGGCGTTTTTGGTAAAGCGCCGCTAATGCCCAGGGC
1 TTTAGCGGCGTTTTTGG-AAAGCGCCGCTAATGCCCAGGAC
*
61890991 TTTAGCGGCATTTTTGGAAAAGCGCCGC
1 TTTAGCGGCGTTTTTGG-AAAGCGCCGC
61891019 AAAAAAACCT
Statistics
Matches: 63, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
39 2 0.03
41 61 0.97
ACGTcount: A:0.20, C:0.23, G:0.30, T:0.27
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTGGAAAGCGCCGCTAATGCCCAGGAC
Found at i:61891077 original size:155 final size:155
Alignment explanation
Indices: 61890795--61891094 Score: 435
Period size: 155 Copynumber: 1.9 Consensus size: 155
61890785 CTTTCGGGGA
* * * * *
61890795 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAGTGCTCGGGGTTTTAGCGGCATTTTTGGGAAAGCG
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGCG
* *
61890860 CCGCAAAAAAACCTAAGCCCAACGACGCTGTTTTTTAAGCTTTCGGAGATTTAGCGGCG-TTTTT
66 CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGAGATTTAGCGGCGTTTTTT
61890924 -AAGGAAGCGCCGCTAATGCCTAGGAC
131 GAA--AAGCGCCGCTAATGCCTAGGAC
*
61890950 TTTAGCGGCGTTTTT-GGTAAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGC
1 TTTAGCGGCGTTTTTAAG-AAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGC
** * * *
61891014 GCCGCAAAAAAACCTAAGTTCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTTGCGGCGTTTTT
65 GCCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGAGATTTAGCGGCGTTTTT
61891079 TGAAAAGCGCCGCTAA
130 TGAAAAGCGCCGCTAA
61891095 AATTTTTTTA
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
154 1 0.01
155 121 0.94
156 5 0.04
157 2 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (155 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCCCAGGGCTTTAGCGGCATTTTTGGAAAAGCG
CCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGAGATTTAGCGGCGTTTTTT
GAAAAGCGCCGCTAATGCCTAGGAC
Found at i:61891379 original size:14 final size:14
Alignment explanation
Indices: 61891338--61891379 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
61891328 AGTTCATATT
61891338 TTATGGTTTAGGGA
1 TTATGGTTTAGGGA
*
61891352 GTATGGGTTTAGGGA
1 TTAT-GGTTTAGGGA
*
61891367 TTATGGATTAGGG
1 TTATGGTTTAGGG
61891380 GTTAGAGGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 11 0.46
15 13 0.54
ACGTcount: A:0.21, C:0.00, G:0.40, T:0.38
Consensus pattern (14 bp):
TTATGGTTTAGGGA
Found at i:61891673 original size:36 final size:36
Alignment explanation
Indices: 61891632--61891722 Score: 94
Period size: 36 Copynumber: 2.5 Consensus size: 36
61891622 TAGGGATTAT
* * *
61891632 GGTTTAAGGGTTGAGATTTAAGGTTTAGGGTTTAGG
1 GGTTTAAGGGTTGAGATTTAAGGGTTAAGATTTAGG
* *
61891668 GGTTTAGGGGTT-AGATGTTAGGGGTTAAGATTTAGG
1 GGTTTAAGGGTTGAGAT-TTAAGGGTTAAGATTTAGG
* *
61891704 GATTTAAGGTTTAGAGATT
1 GGTTTAAGGGTT-GAGATT
61891723 CAGGGGTCGA
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
35 4 0.09
36 35 0.80
37 1 0.02
38 4 0.09
ACGTcount: A:0.24, C:0.00, G:0.37, T:0.38
Consensus pattern (36 bp):
GGTTTAAGGGTTGAGATTTAAGGGTTAAGATTTAGG
Found at i:61891698 original size:15 final size:13
Alignment explanation
Indices: 61891670--61891704 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 13
61891660 GGTTTAGGGG
61891670 TTTAGGGGTTAGA
1 TTTAGGGGTTAGA
61891683 TGTTAGGGGTTAAGA
1 T-TTAGGGGTT-AGA
61891698 TTTAGGG
1 TTTAGGG
61891705 ATTTAAGGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
13 1 0.05
14 15 0.75
15 4 0.20
ACGTcount: A:0.23, C:0.00, G:0.40, T:0.37
Consensus pattern (13 bp):
TTTAGGGGTTAGA
Found at i:61891710 original size:15 final size:14
Alignment explanation
Indices: 61891648--61891717 Score: 61
Period size: 15 Copynumber: 4.9 Consensus size: 14
61891638 AGGGTTGAGA
61891648 TTTAAGGTTTAGGG
1 TTTAAGGTTTAGGG
*
61891662 TTTAGGGGTTTAGGG
1 TTTA-AGGTTTAGGG
* *
61891677 GTT-AGATGTTAGGG
1 TTTAAGGT-TTAGGG
* *
61891691 GTTAAGATTTAGGG
1 TTTAAGGTTTAGGG
61891705 ATTTAAGGTTTAG
1 -TTTAAGGTTTAG
61891718 AGATTCAGGG
Statistics
Matches: 46, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
13 2 0.04
14 19 0.41
15 25 0.54
ACGTcount: A:0.23, C:0.00, G:0.37, T:0.40
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:61892485 original size:145 final size:145
Alignment explanation
Indices: 61892208--61893610 Score: 2290
Period size: 145 Copynumber: 9.7 Consensus size: 145
61892198 AAATAGCTTA
* * *
61892208 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAAAAATTTTATAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGC
* ** * *
61892273 GCCGTTTTGTTCAAAATGAAAAAAAATTACGGCGCATTATAAGAAGCGCCGCTAAAGGTAAGCAA
66 GTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
61892338 TAGCGGCGTTTTTAT
131 TAGCGGCGTTTTTAT
*
61892353 AGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTATAATAGCAAAACGG
1 A-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGG
61892418 CGTCGTTTTGTTCAAAATGAAAAAA-TTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
65 CGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
*
61892482 ATAGCGGCGTTTTTAC
130 ATAGCGGCGTTTTTAT
61892498 AGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAAATTTAGAATAGCAAAACG
1 A-AAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAAATAAAAAAAATTTAGAATAGCAAAACG
61892563 GCGTCGTTTTGTTCAAAATGAAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAG
64 GCGTCGTTTTGTTCAAAATG-AAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAG
61892628 CAATAGCGGCGTTTTCTAT
128 CAATAGCGGCGTTTT-TAT
*
61892647 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAA-TTATAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGC
*
61892711 GTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGC-TTAT-A-AAGCGCCGCTAAAGGTAAGCAA
66 GTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
61892773 TAGCGGCG--TTTAT
131 TAGCGGCGTTTTTAT
*
61892786 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA-ATAAAAAATTTAGAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGC
*
61892850 TTCGTTTTGTTCAAAAT-AAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
66 GTCGTTTTGTTCAAAATGAAAAAA-TTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCA
61892914 ATAGCGGCGTTTTTTAT
130 ATAGCGGCG-TTTTTAT
61892931 AGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAAATTTTAGAATAGCAAAAC
1 A-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAT-AAAAAAAA-TTTAGAATAGCAAAAC
61892996 GGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAG
63 GGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAG
61893061 CAATAGCGGCGTTTTCTAT
128 CAATAGCGGCGTTTT-TAT
*
61893080 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAA-TTATAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGC
*
61893144 GTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGC-TTAT-A-AAGCGCCGCTAAAGGTAAGCAA
66 GTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
61893206 TAGCGGCGTTTTTAT
131 TAGCGGCGTTTTTAT
*
61893221 AGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA-ATAAAAAATTTAGAATAGCAAAACGG
1 A-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGG
*
61893285 CGTCGTTTTGTTCAAAAT-AAAAAATTTTTACGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGC
65 CGTCGTTTTGTTCAAAATGAAAAAA-TTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGC
* *
61893349 AATAACGGCTTTTTCTAT
129 AATAGCGGCGTTTT-TAT
61893367 AAAAACGCCGCAAAAAATAAATCAATTTAT-----AA-AAAAAAAATTTAGAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGC
61893426 GTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
66 GTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
*
61893491 TAGCGGCTTTTTCTAT
131 TAGCGGCGTTTT-TAT
* *
61893507 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAAAAATTTAAAATAGTAAAAC
1 AAAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAAAT--AAAAAAAATTTAGAATAGCAAAAC
61893572 GGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
63 GGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
61893611 AATCAATAGC
Statistics
Matches: 1192, Mismatches: 30, Indels: 68
0.92 0.02 0.05
Matches are distributed among these distances:
138 13 0.01
139 83 0.07
140 136 0.11
141 24 0.02
142 173 0.15
143 6 0.01
144 9 0.01
145 217 0.18
146 214 0.18
147 30 0.03
148 129 0.11
149 152 0.13
150 6 0.01
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (145 bp):
AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGC
GTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAA
TAGCGGCGTTTTTAT
Found at i:61892696 original size:20 final size:20
Alignment explanation
Indices: 61892658--61892698 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
61892648 AAAACGCCGC
** *
61892658 AAAAAATAAATCAATTTATA
1 AAAAAATAAAAAAAATTATA
61892678 AAAAAATAAAAAAAATTATA
1 AAAAAATAAAAAAAATTATA
61892698 A
1 A
61892699 TAGCAAAACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAAATAAAAAAAATTATA
Found at i:61893058 original size:433 final size:433
Alignment explanation
Indices: 61892208--61893814 Score: 2577
Period size: 433 Copynumber: 3.7 Consensus size: 433
61892198 AAATAGCTTA
* *
61892208 AAAAACGCCGCAAAAAATAAATCAACTTATAAAAAAATAAAAAAATTTTATAATAGCAAAACGGC
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAA-ATTATAATAGCAAAACGGC
* * *
61892273 GCCGTTTTGTTCAAAATGAAAAAAAATTACGGCGCATTATAAGAAGCGCCGCTAAAGGTAAGCAA
65 GTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGC-TTAT-A-AAGCGCCGCTAAAGGTAAGCAA
61892338 TAGCGGCGTTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTT
127 TAGCGGCG-TTTTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTT
*
61892403 ATAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAA--TTTGCGGCGCTTTATAAGAAGCG
191 AGAATAGCAAAACGGCGTCGTTTTGTTCAAAAT-AAAAAATTTTTGCGGCGCTTTATAAGAAGCG
*
61892466 CCGCTAAAGGTAAGCAATAGCGGCG-TTTTTACAGAAAACGCCGCAAAAAATAAATCAATTTATA
255 CCGCTAAAGGTAAGCAATAGCGGCGTTTTTTATA-AAAACGCCGCAAAAAATAAATCAATTTATA
61892530 AAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTTG
319 AAAAAAA-AAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATG-AAAAAATTTTG
61892595 CGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTAT
382 CGGCGCTTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTAT
61892647 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTATAATAGCAAAACGGCG
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTATAATAGCAAAACGGCG
61892712 TCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTATAAAGCGCCGCTAAAGGTAAGCAATAGC
66 TCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTATAAAGCGCCGCTAAAGGTAAGCAATAGC
*
61892777 GGCG-TTTATA-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA-ATAAAAAATTTAGAAT
131 GGCGTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAAT
*
61892839 AGCAAAACGGCTTCGTTTTGTTCAAAATAAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCTA
196 AGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCTA
61892904 AAGGTAAGCAATAGCGGCGTTTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA
261 AAGGTAAGCAATAGCGGCGTTTTTTATA-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA
61892969 TAAAAAAAAATTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGC
325 -AAAAAAAAA-TTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGC
61893034 TTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTAT
388 TTTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTAT
61893080 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTATAATAGCAAAACGGCG
1 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTATAATAGCAAAACGGCG
61893145 TCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTATAAAGCGCCGCTAAAGGTAAGCAATAGC
66 TCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTATAAAGCGCCGCTAAAGGTAAGCAATAGC
*
61893210 GGCGTTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAA-ATAAAAAATTTAGAA
131 GGCG-TTTTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAA
*
61893274 TAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAATTTTTACGGCGCTTTATAAGAAGCGCCGCT
195 TAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCT
*
61893339 AAAGGTAAGCAATAACGGC-TTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTAT------
260 AAAGGTAAGCAATAGCGGCGTTTTT-TATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAA
61893397 AAAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
324 AAAAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCT
*
61893462 TTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCTTTTTCTAT
389 TTATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTAT
* *
61893507 AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAAAAATTTAAAATAGTAAAAC
1 AAAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAAAT--AAAAAAAA-TTATAATAGCAAAAC
*
61893572 GGCGTCGTTTTGTTCAAAATG-AAAAAA--T-------TT-T---GCGGCGCT-AA--T---CAA
62 GGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTATAAAGCGCCGCTAAAGGTAAGCAA
61893617 TAGCGGCGTTTTCTATA-AAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATT
127 TAGCGGCG-TTT-TATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATT
* * *
61893681 TAGAATAGCAAAACGGCGTCGTTTTGTTTAAAATAAAAAAATTTTGTGGCGCTTCT-TATA-AAG
190 TAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAATTTTTGCGGCGCTT-TATA-AGAAG
*
61893744 CGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTAT
253 CGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTTATAAAAACGCCGCAAAAAATAAATCAATTTAT
61893809 AAAAAA
318 AAAAAA
61893815 TTTCCCAAAA
Statistics
Matches: 1121, Mismatches: 23, Indels: 69
0.92 0.02 0.06
Matches are distributed among these distances:
411 51 0.05
412 126 0.11
413 6 0.01
414 1 0.00
416 2 0.00
417 7 0.01
420 1 0.00
421 2 0.00
427 129 0.12
428 18 0.02
429 1 0.00
430 20 0.02
431 75 0.07
432 84 0.07
433 255 0.23
434 38 0.03
435 70 0.06
436 137 0.12
437 4 0.00
438 50 0.04
439 44 0.04
ACGTcount: A:0.45, C:0.14, G:0.16, T:0.25
Consensus pattern (433 bp):
AAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTATAATAGCAAAACGGCG
TCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGCTTATAAAGCGCCGCTAAAGGTAAGCAATAGC
GGCGTTTTATAGAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAATAAAAAAAATTTAGAAT
AGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAATTTTTGCGGCGCTTTATAAGAAGCGCCGCTA
AAGGTAAGCAATAGCGGCGTTTTTTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAA
AAAAAAAATTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTTT
ATAAGAAGCGCCGCTAAAGGTAAGCAATAGCGGCGTTTTCTAT
Found at i:61893129 original size:20 final size:20
Alignment explanation
Indices: 61893091--61893131 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
61893081 AAAACGCCGC
** *
61893091 AAAAAATAAATCAATTTATA
1 AAAAAATAAAAAAAATTATA
61893111 AAAAAATAAAAAAAATTATA
1 AAAAAATAAAAAAAATTATA
61893131 A
1 A
61893132 TAGCAAAACG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.73, C:0.02, G:0.00, T:0.24
Consensus pattern (20 bp):
AAAAAATAAAAAAAATTATA
Found at i:61893732 original size:123 final size:125
Alignment explanation
Indices: 61893488--61893733 Score: 415
Period size: 123 Copynumber: 2.0 Consensus size: 125
61893478 TAAAGGTAAG
*
61893488 CAATAGCGGCTTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAA
1 CAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAAT-AAAAAA
* *
61893553 AAATTTAAAATAGTAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGCTAAT
65 AAATTTAAAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAAATTTTGCGGCGCTAAT
61893614 CAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTAT-AAAAAAAT-AAAAAA
1 CAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAA
* * *
61893677 AATTTAGAATAGCAAAACGGCGTCGTTTTGTTTAAAATAAAAAAATTTTGTGGCGCT
66 AATTTAAAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAAATTTTGCGGCGCT
61893734 TCTTATAAAG
Statistics
Matches: 114, Mismatches: 6, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
123 58 0.51
125 8 0.07
126 48 0.42
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.27
Consensus pattern (125 bp):
CAATAGCGGCGTTTTCTATAAAAACGCCGCAAAAAATAAATCAATTTATAAAAAAAATAAAAAAA
AATTTAAAATAGCAAAACGGCGTCGTTTTGTTCAAAATAAAAAAATTTTGCGGCGCTAAT
Found at i:61895931 original size:25 final size:26
Alignment explanation
Indices: 61895883--61895931 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
61895873 TTTCAGTTTG
*
61895883 ATTATTTTTAGTTTTATATTTTTAGT
1 ATTATTTTTAGTTTTATATATTTAGT
61895909 ATTA-TTTTAGTTTCTATA-ATTTA
1 ATTATTTTTAGTTT-TATATATTTA
61895932 ACATATGTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.27, C:0.02, G:0.06, T:0.65
Consensus pattern (26 bp):
ATTATTTTTAGTTTTATATATTTAGT
Found at i:61897722 original size:86 final size:86
Alignment explanation
Indices: 61897592--61897760 Score: 259
Period size: 86 Copynumber: 2.0 Consensus size: 86
61897582 GAATCGTACT
* * *
61897592 TTTAGTAGCGTTTGTGATAAAAGCGCCGTTAAAGATCATGTTCTTTAGCGGTGTTTGTGA-TGAA
1 TTTAGTAGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTATGAGT-AA
*
61897656 AGCGCCACTAAAGATCATGTTC
65 AGCGCCACTAAAGAACATGTTC
* *
61897678 TTTAGTGGCGTTTGTGATAAAAGCGCTGCTAAAGATCATGTTCTTTAGCGGCGTTTATGAGTAAA
1 TTTAGTAGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTATGAGTAAA
*
61897743 GCGCCGCTAAAGAACATG
66 GCGCCACTAAAGAACATG
61897761 ACCTTTAGCG
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
86 74 0.99
87 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.32
Consensus pattern (86 bp):
TTTAGTAGCGTTTGTGATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTATGAGTAAA
GCGCCACTAAAGAACATGTTC
Found at i:61897767 original size:43 final size:43
Alignment explanation
Indices: 61897599--61897778 Score: 227
Period size: 43 Copynumber: 4.2 Consensus size: 43
61897589 ACTTTTAGTA
* *
61897599 GCGTTTGTGATAAAAGCGCCGTTAAAGATCATGTTCTTTAGCG
1 GCGTTTATGATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCG
* * * * *
61897642 GTGTTTGTGATGAAAGCGCCACTAAAGATCATGTTCTTTAGTG
1 GCGTTTATGATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCG
* *
61897685 GCGTTTGTGATAAAAGCGCTGCTAAAGATCATGTTCTTTAGCG
1 GCGTTTATGATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCG
* **
61897728 GCGTTTATGAGT-AAAGCGCCGCTAAAGAACATGACCTTTAGCG
1 GCGTTTATGA-TAAAAGCGCCGCTAAAGATCATGTTCTTTAGCG
*
61897771 GCGCTTAT
1 GCGTTTAT
61897779 TTCTGTAAAC
Statistics
Matches: 120, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
43 119 0.99
44 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
GCGTTTATGATAAAAGCGCCGCTAAAGATCATGTTCTTTAGCG
Found at i:61908208 original size:13 final size:13
Alignment explanation
Indices: 61908175--61908216 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
61908165 TATTTTTCTA
61908175 AATATATTTATTTT
1 AATAT-TTTATTTT
*
61908189 -TTATTTTATTTT
1 AATATTTTATTTT
61908201 AATATTTTATATTT
1 AATATTTTAT-TTT
61908215 AA
1 AA
61908217 AAATTTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 8 0.33
13 11 0.46
14 5 0.21
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (13 bp):
AATATTTTATTTT
Found at i:61908318 original size:15 final size:15
Alignment explanation
Indices: 61908298--61908326 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
61908288 AAGTAGTATT
61908298 ATATATTTAGTATAG
1 ATATATTTAGTATAG
61908313 ATATATTTAGTATA
1 ATATATTTAGTATA
61908327 TCTCATGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.48
Consensus pattern (15 bp):
ATATATTTAGTATAG
Found at i:61913462 original size:15 final size:15
Alignment explanation
Indices: 61913444--61913493 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 15
61913434 CTACAAAACT
61913444 TTTATTATTAATATA
1 TTTATTATTAATATA
*
61913459 TTTATAATTGAATAAATA
1 TTTATTATT-AAT--ATA
*
61913477 TTTATTATTAAAATA
1 TTTATTATTAATATA
61913492 TT
1 TT
61913494 AGTATTGAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
15 13 0.45
16 3 0.10
17 2 0.07
18 11 0.38
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TTTATTATTAATATA
Found at i:61913551 original size:15 final size:16
Alignment explanation
Indices: 61913531--61913561 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
61913521 AAGAATACAA
61913531 TTTAAAA-TTATTATT
1 TTTAAAATTTATTATT
61913546 TTTAAAATTTATTATT
1 TTTAAAATTTATTATT
61913562 AAAATAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (16 bp):
TTTAAAATTTATTATT
Found at i:61918162 original size:16 final size:17
Alignment explanation
Indices: 61918124--61918166 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
61918114 ACAAACTTGA
61918124 TTATTATA-ATGAAATG
1 TTATTATAGATGAAATG
* *
61918140 TTGTTATAGATGATA-G
1 TTATTATAGATGAAATG
61918156 TTATTATAGAT
1 TTATTATAGAT
61918167 ATGGCTAACT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 18 0.78
17 5 0.22
ACGTcount: A:0.37, C:0.00, G:0.16, T:0.47
Consensus pattern (17 bp):
TTATTATAGATGAAATG
Found at i:61920902 original size:6 final size:6
Alignment explanation
Indices: 61920797--61920884 Score: 176
Period size: 6 Copynumber: 14.7 Consensus size: 6
61920787 GGGTAGGATC
61920797 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA
1 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA
61920845 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTA
1 TGTATA TGTATA TGTATA TGTATA TGTATA TGTATA TGTA
61920885 ATTGAATTTG
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 82 1.00
ACGTcount: A:0.33, C:0.00, G:0.17, T:0.50
Consensus pattern (6 bp):
TGTATA
Found at i:61923495 original size:29 final size:29
Alignment explanation
Indices: 61923453--61923517 Score: 96
Period size: 29 Copynumber: 2.2 Consensus size: 29
61923443 AAAAAAATGA
61923453 ATAGTTGGGTGACCATTTT-TAAACTTTTC
1 ATAGTTGGGTGACCATTTTGT-AACTTTTC
* *
61923482 ATAGTTGGGTGACCATTTTGTAATTTTTT
1 ATAGTTGGGTGACCATTTTGTAACTTTTC
61923511 ATAGTTG
1 ATAGTTG
61923518 AGTGGCAAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 32 0.97
30 1 0.03
ACGTcount: A:0.23, C:0.09, G:0.20, T:0.48
Consensus pattern (29 bp):
ATAGTTGGGTGACCATTTTGTAACTTTTC
Done.