Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 198 of 199
Found at i:62697490 original size:99 final size:99
Alignment explanation
Indices: 62697075--62698312 Score: 1618
Period size: 99 Copynumber: 12.5 Consensus size: 99
62697065 GAAACCATAG
* * * * *
62697075 ATTGCAATTTAAAAGATTAAAGCCACAATGACGAATCTTACTTCTCAGGCGATGCAACGGAATAG
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTC-CAGGCGATGCAGCGGAACAG
* * * * *
62697140 ATTGAAGCAACGACGGTGAATCTCGCTTCCCTGAC
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
62697175 ATTGTAATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTCTCAGGCGATGCAGCGAAACAG
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTC-CAGGCGATGCAGCGGAACAG
* * * *
62697240 ATTGAAGCTACGACGGCGAATCTCGTTTCCCCAAC
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * **
62697275 ATTGCAATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTCCAGACGATGTAATGGAACAGA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGA
* *
62697340 TT-TAGCTACAACGACGAATCTTGCTTCCCCGAC
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * *
62697373 ATTGTAATTTAAAAGATTGAAGTCACAACGGCGAATCTTACTTCCAGGCAATGCAGCGGAACAAA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGA
*
62697438 TTGAAGCTACAACGGCGAATTTTGCTTCCCCGAC
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * *
62697472 ATTGCAATTTAAAAGATTGAAGCTATAACTGCGAATCTTACTTTCAGGCGATGCAGCGGAACAGA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGA
*
62697537 TTGAAGCTACAACGGCGAATCTTGCTTCCCCAAC
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* *
62697571 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGTGGAATAGA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGA
* * * * *
62697636 TTGAAGCTACGATGGCGAATTTTCCTTCCCTGAC
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
62697670 ACTGCAATTTAAAAGATTGAAGTCACAACGGCGAATCTTACTTCCAGGCGATGCAGCAGAACAGA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGA
* * *
62697735 TTGAAGCTACAATGGCGAATTTTCCTTCCCCGAC
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
62697769 ATTGCAATTTAAAAGATTGAAGTCACAACGGCGAATCTTACTTCCAGACGATGCAGCAGAACAGA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGA
* *
62697834 TTGAAGCTACAATGGCGAATTTTGCTTCCCCGAC
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * * * *
62697868 ATTACAATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTTCCCAAGCGGTGAAGTGGAACA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTAC-TT-CCAGGCGATGCAGCGGAACA
* ** * * *
62697933 AATTGAAGCTATGACGGCAAATCTTCCTTCCTCGAC
64 GATTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * *
62697969 ATTGCAATTAAAAAGATTGAAGCCACAACGGTGAATCTTACTTTCCAGGCGATGCAGCGAAACAA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTAC-TTCCAGGCGATGCAGCGGAACAG
*
62698034 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGAT
65 ATTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * *
62698069 ATTGCAATTTAAAAGATTGAGGCCACAACGGCGAATC-TACTTCCAGGCGATGCAGCAGAATAGA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGA
* *
62698133 TTAAAGCTACGACGGCGAATCTTGCTTCCCCGAC
66 TTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
* * * * *
62698167 ATTGCAATTTAAAATATTGAAGCCACAACGGCGAACCTTACTTTCCCAAGCGGTGCAGTGGAACA
1 ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTAC-TT-CCAGGCGATGCAGCGGAACA
* *
62698232 GATTGAAGCTACGACGGCGAATCTTACTTCCCCGAC
64 GATTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
** * *
62698268 ATTGC-GGTTAAATAGATTGAAGCTACAACAGCGAATCTTACTTCC
1 ATTGCAATTTAAA-AGATTGAAGCCACAACGGCGAATCTTACTTCC
62698313 CTGGCGGTGA
Statistics
Matches: 1006, Mismatches: 125, Indels: 15
0.88 0.11 0.01
Matches are distributed among these distances:
98 168 0.17
99 456 0.45
100 220 0.22
101 162 0.16
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (99 bp):
ATTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCAGGCGATGCAGCGGAACAGA
TTGAAGCTACAACGGCGAATCTTGCTTCCCCGAC
Found at i:62699485 original size:5 final size:5
Alignment explanation
Indices: 62699475--62699499 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
62699465 ACGTACTTAG
62699475 TTATT TTATT TTATT TTATT TTATT
1 TTATT TTATT TTATT TTATT TTATT
62699500 CTCTCCTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTATT
Found at i:62700919 original size:110 final size:108
Alignment explanation
Indices: 62700726--62701047 Score: 429
Period size: 110 Copynumber: 3.0 Consensus size: 108
62700716 TCAAAAAGGA
* * *
62700726 AAAATTTTCTAAATGAGGCAATATTTAGCGTTTGGAAA-TTCGAGGAAACGTGCCCTAATGTG-T
1 AAAATTTTC-AAATAAGGCAATGTTTTGCGTTTGGAAATTTCGA-GAAACGTGCCCTAATGTGCT
* * **
62700789 CGGGTTTCGATTTTTTCTCGTTCAACCAAATAGCTAAATATCCTTTT
64 -GGGTTTC-AATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTCC
* *
62700836 AAAATTTTCAAAATAAGGCAATGTTTTGCGTTTGAAAATTTCGAGAAAACATGCCCTAATGTGCT
1 AAAATTTTC-AAATAAGGCAATGTTTTGCGTTTGGAAATTTCGAG-AAACGTGCCCTAATGTGCT
62700901 GGGTTTCAATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTCC
64 GGGTTTCAATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTCC
* *
62700946 AAAAATTTCAAATAAGGCAATGTTTTGCGTTTGGAAATTT-GAGGAACGTGCCCTAATGTGCTGG
1 AAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGAAATTTCGAGAAACGTGCCCTAATGTGCTGG
* * *
62701010 GTTTCGA--TTTCTCGTTTAACCAAATTGCCAAATATCCT
66 GTTTCAATTTTTCTCGTTCAACCAAATAGCCAAATATCCT
62701048 CTTGAATTTC
Statistics
Matches: 192, Mismatches: 17, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
105 29 0.15
107 25 0.13
108 3 0.02
109 30 0.16
110 76 0.40
111 28 0.15
112 1 0.01
ACGTcount: A:0.30, C:0.17, G:0.17, T:0.35
Consensus pattern (108 bp):
AAAATTTTCAAATAAGGCAATGTTTTGCGTTTGGAAATTTCGAGAAACGTGCCCTAATGTGCTGG
GTTTCAATTTTTCTCGTTCAACCAAATAGCCAAATATCCTTCC
Found at i:62710859 original size:15 final size:15
Alignment explanation
Indices: 62710839--62710883 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
62710829 ACTATCTTTG
*
62710839 ATTAATAGTTAATTA
1 ATTAATACTTAATTA
62710854 ATTAAT-CTTAAATTA
1 ATTAATACTT-AATTA
62710869 ATTAA-ACTTAATTA
1 ATTAATACTTAATTA
62710883 A
1 A
62710884 CTCATCCTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 8 0.30
15 19 0.70
ACGTcount: A:0.49, C:0.04, G:0.02, T:0.44
Consensus pattern (15 bp):
ATTAATACTTAATTA
Found at i:62716078 original size:31 final size:29
Alignment explanation
Indices: 62716017--62716078 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
62716007 AAAATTAAAG
62716017 GATTAAATTTCTAAAAGTAAAAATACAAA
1 GATTAAATTTCTAAAAGTAAAAATACAAA
*
62716046 GATTAAATTTC-AAATGTACGAAAACTACAAA
1 GATTAAATTTCTAAAAGTA--AAAA-TACAAA
62716077 GA
1 GA
62716079 ATAGGGTGTA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
28 6 0.21
29 11 0.38
30 4 0.14
31 8 0.28
ACGTcount: A:0.55, C:0.10, G:0.10, T:0.26
Consensus pattern (29 bp):
GATTAAATTTCTAAAAGTAAAAATACAAA
Found at i:62721836 original size:21 final size:21
Alignment explanation
Indices: 62721810--62721849 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
62721800 AAAACAATTA
* *
62721810 AATTAAATTCGGATCGGATTG
1 AATTAAATTAGAATCGGATTG
62721831 AATTAAATTAGAATCGGAT
1 AATTAAATTAGAATCGGAT
62721850 GTCTTATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.07, G:0.20, T:0.33
Consensus pattern (21 bp):
AATTAAATTAGAATCGGATTG
Found at i:62725952 original size:31 final size:30
Alignment explanation
Indices: 62725882--62725954 Score: 101
Period size: 31 Copynumber: 2.4 Consensus size: 30
62725872 TATGATATGA
*
62725882 TAATTAAATTAAATTAAATATTATTTAATG
1 TAATTAAATTAAATTAAATATTATATAATG
* * *
62725912 TGATTAAATTAAATTAAAATGTTATATATTG
1 TAATTAAATTAAATT-AAATATTATATAATG
62725943 TAATTAAATTAA
1 TAATTAAATTAA
62725955 GGTAATAGTG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
30 14 0.38
31 23 0.62
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.45
Consensus pattern (30 bp):
TAATTAAATTAAATTAAATATTATATAATG
Found at i:62726079 original size:31 final size:31
Alignment explanation
Indices: 62726013--62726084 Score: 90
Period size: 31 Copynumber: 2.3 Consensus size: 31
62726003 TTTAGTAGTT
* *
62726013 AATAAGGATATTTTAGGTAACATAAAAAATT
1 AATAGGGATATTTTAGGTAACATAAAAAATC
** *
62726044 AATAGGGATATTTTAGGTAGTATTAAAAATC
1 AATAGGGATATTTTAGGTAACATAAAAAATC
*
62726075 AATAGAGATA
1 AATAGGGATA
62726085 AATTATTCCT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.49, C:0.03, G:0.17, T:0.32
Consensus pattern (31 bp):
AATAGGGATATTTTAGGTAACATAAAAAATC
Found at i:62726891 original size:10 final size:10
Alignment explanation
Indices: 62726876--62726901 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
62726866 TTCAAAGCTT
62726876 TTTAGAAAGA
1 TTTAGAAAGA
62726886 TTTAGAAAGA
1 TTTAGAAAGA
62726896 TTTAGA
1 TTTAGA
62726902 TAAAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (10 bp):
TTTAGAAAGA
Found at i:62728254 original size:19 final size:19
Alignment explanation
Indices: 62728227--62728269 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
62728217 TTTTATATAC
*
62728227 TTTTTAATAA-TTTTTAAT
1 TTTTTAATAACTTTATAAT
62728245 TTTTTAAATAACTTTATAAT
1 TTTTT-AATAACTTTATAAT
62728265 TTTTT
1 TTTTT
62728270 TAATTTTCCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 5 0.23
19 5 0.23
20 12 0.55
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTTTAATAACTTTATAAT
Found at i:62729170 original size:6 final size:6
Alignment explanation
Indices: 62729139--62729183 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
62729129 TTTTCATCAC
*
62729139 TTTATA ATT-TA TTTAT- TTGTAT- TTTATA TTTATA TTTATA TTTAT
1 TTTATA TTTATA TTTATA TT-TATA TTTATA TTTATA TTTATA TTTAT
62729184 TTATACTAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 9 0.26
6 25 0.74
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (6 bp):
TTTATA
Found at i:62729176 original size:23 final size:22
Alignment explanation
Indices: 62729139--62729185 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
62729129 TTTTCATCAC
62729139 TTTATAATTTATTTAT-TTGTAT
1 TTTATAATTTATTTATATT-TAT
*
62729161 TTTATATTTATATTTATATTTAT
1 TTTATAATT-TATTTATATTTAT
62729184 TT
1 TT
62729186 ATACTAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 8 0.36
23 12 0.55
24 2 0.09
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTATAATTTATTTATATTTAT
Found at i:62729178 original size:12 final size:12
Alignment explanation
Indices: 62729139--62729183 Score: 51
Period size: 11 Copynumber: 3.9 Consensus size: 12
62729129 TTTTCATCAC
*
62729139 TTTATAATT-TA
1 TTTATATTTATA
62729150 TTTAT-TTGTAT-
1 TTTATATT-TATA
62729161 TTTATATTTATA
1 TTTATATTTATA
62729173 TTTATATTTAT
1 TTTATATTTAT
62729184 TTATACTAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
10 1 0.03
11 14 0.48
12 14 0.48
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (12 bp):
TTTATATTTATA
Found at i:62732303 original size:182 final size:184
Alignment explanation
Indices: 62731978--62732321 Score: 469
Period size: 182 Copynumber: 1.9 Consensus size: 184
62731968 TTGAAGAATC
* * ** *
62731978 AAATTATGTCAAAATTAAAATATAGATATTTAAAGCTCACATTTGAGCGAAATATAGGGATCAAA
1 AAATTATATCAAAATTAAAATATAGAAAAATAAAGCTCAAATTTGAGCGAAATATAGGGATCAAA
* * * * *
62732043 ATTGAAATTTAACCACTTTTATATAATCTTAAAGAAAGTAGATGGATTAGACTTGAAATTGGCCA
66 ATTGAAATTTAACCACTTTTACATAATCTTAAAGAAAGTAGAGGGATTAAAATTGAAATTAGCCA
*
62732108 TTATTTTCTCATGTCAAAAGAAAAAAAAAGAACAAAAAGTACGAATAGGTGTCT
131 CTATTTTCTCATGTCAAAAGAAAAAAAAAGAACAAAAAGTACGAATAGGTGTCT
* * * *
62732162 AAATTATATCAAAATTAAAGTATA-AAAAATAAATCTCAAATTTGAGTGTAATATA-GGATCAAA
1 AAATTATATCAAAATTAAAATATAGAAAAATAAAGCTCAAATTTGAGCGAAATATAGGGATCAAA
** * * *
62732225 ATTGAAATTTAATTATTTTTACATAATCTTAAA-AAGGTATAGGGATTAAAATTGAAATTAGCCA
66 ATTGAAATTTAACCACTTTTACATAATCTTAAAGAAAGTAGAGGGATTAAAATTGAAATTAGCCA
*
62732289 CTATTTTCCTCATGTCAAAAGAAAAGAAAAGAA
131 CTATTTT-CTCATGTCAAAAGAAAAAAAAAGAA
62732322 TGGACAGGTA
Statistics
Matches: 138, Mismatches: 21, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
181 31 0.22
182 61 0.44
183 24 0.17
184 22 0.16
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (184 bp):
AAATTATATCAAAATTAAAATATAGAAAAATAAAGCTCAAATTTGAGCGAAATATAGGGATCAAA
ATTGAAATTTAACCACTTTTACATAATCTTAAAGAAAGTAGAGGGATTAAAATTGAAATTAGCCA
CTATTTTCTCATGTCAAAAGAAAAAAAAAGAACAAAAAGTACGAATAGGTGTCT
Found at i:62734900 original size:44 final size:42
Alignment explanation
Indices: 62734831--62734921 Score: 110
Period size: 44 Copynumber: 2.1 Consensus size: 42
62734821 GATAAACCAT
* **
62734831 AAATTTGCAGATAAACTGCTGCTGGGCTATGGATACACAGCA
1 AAATTTGCAAATAAACTGCCACTGGGCTATGGATACACAGCA
* * *
62734873 AAATTTGCAAATGAGAACTGCCACTGGGTTGTGGATGCACAGCA
1 AAATTTGCAAAT-A-AACTGCCACTGGGCTATGGATACACAGCA
62734917 AAATT
1 AAATT
62734922 CACAGATAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 11 0.27
43 1 0.02
44 29 0.71
ACGTcount: A:0.34, C:0.18, G:0.24, T:0.24
Consensus pattern (42 bp):
AAATTTGCAAATAAACTGCCACTGGGCTATGGATACACAGCA
Found at i:62735824 original size:30 final size:31
Alignment explanation
Indices: 62735768--62735827 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
62735758 TTGGGATAGA
*
62735768 TGGGAGGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGGAGGGGAATAAAAATTTTAGGGGAAAAG
* *
62735799 TGGGA-GGGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGGGGAATAAAAATTTTAGGGGAAAA
62735828 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.38, C:0.00, G:0.42, T:0.20
Consensus pattern (31 bp):
TGGGAGGGGAATAAAAATTTTAGGGGAAAAG
Found at i:62736367 original size:38 final size:38
Alignment explanation
Indices: 62736311--62736464 Score: 191
Period size: 38 Copynumber: 4.1 Consensus size: 38
62736301 TGTAATAGAA
* * *
62736311 CAATTCAACACTAGCAATAGACATGTTTAACATGTACT
1 CAATTCATCATTAACAATAGACATGTTTAACATGTACT
*
62736349 CAATTCATCATTAACAATAGACATGTTTAACTTGTACT
1 CAATTCATCATTAACAATAGACATGTTTAACATGTACT
* * * *
62736387 CAATTCATTATTAACAGTAGACATGTTTAATACGTACT
1 CAATTCATCATTAACAATAGACATGTTTAACATGTACT
* * * * *
62736425 CAATTCATTATTAACAGTAGACATGCTTATCATGTTCT
1 CAATTCATCATTAACAATAGACATGTTTAACATGTACT
62736463 CA
1 CA
62736465 GTAGGGCGGT
Statistics
Matches: 102, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
38 102 1.00
ACGTcount: A:0.36, C:0.19, G:0.10, T:0.35
Consensus pattern (38 bp):
CAATTCATCATTAACAATAGACATGTTTAACATGTACT
Found at i:62757055 original size:17 final size:16
Alignment explanation
Indices: 62757035--62757070 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
62757025 AAAATCTTAG
62757035 AAATCTTAAAATCATCA
1 AAATCTTAAAATCA-CA
*
62757052 AAATTTTAAAATCACA
1 AAATCTTAAAATCACA
62757068 AAA
1 AAA
62757071 CCTAAACTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 5 0.28
17 13 0.72
ACGTcount: A:0.58, C:0.14, G:0.00, T:0.28
Consensus pattern (16 bp):
AAATCTTAAAATCACA
Found at i:62757055 original size:26 final size:25
Alignment explanation
Indices: 62757015--62757064 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
62757005 CATCAAAACC
62757015 TAAAATCTCAAAAATCTTAGAAATCT
1 TAAAATCTCAAAAATCTTA-AAATCT
*
62757041 TAAAATCATC-AAAATTTTAAAATC
1 TAAAATC-TCAAAAATCTTAAAATC
62757065 ACAAAACCTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 5 0.23
26 15 0.68
27 2 0.09
ACGTcount: A:0.52, C:0.14, G:0.02, T:0.32
Consensus pattern (25 bp):
TAAAATCTCAAAAATCTTAAAATCT
Found at i:62760793 original size:15 final size:14
Alignment explanation
Indices: 62760762--62760805 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 14
62760752 GATTGATTAG
62760762 ATTAAAAAATTATTAA
1 ATTAAAAAATTA--AA
62760778 ATTTTAAAAAATTAAA
1 A--TTAAAAAATTAAA
62760794 ATTAAAAAATTA
1 ATTAAAAAATTA
62760806 GTTTAATTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
14 11 0.42
16 4 0.15
18 11 0.42
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (14 bp):
ATTAAAAAATTAAA
Found at i:62763577 original size:15 final size:16
Alignment explanation
Indices: 62763542--62763581 Score: 55
Period size: 17 Copynumber: 2.5 Consensus size: 16
62763532 AAATTTCGTA
62763542 AAATATCAAATACATCC
1 AAATATCAAATACA-CC
*
62763559 AAATATTAAATAC-CC
1 AAATATCAAATACACC
62763574 AAATATCA
1 AAATATCA
62763582 TGCACGCGGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 9 0.43
17 12 0.57
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (16 bp):
AAATATCAAATACACC
Found at i:62763850 original size:51 final size:52
Alignment explanation
Indices: 62763770--62763884 Score: 137
Period size: 51 Copynumber: 2.2 Consensus size: 52
62763760 ATTGGCCTGA
* ** * * *
62763770 TAACAAATTTAG-TCTTCAAAGTTTCCATATTTTATCAGTTTGGTCTTGATT
1 TAACAAATTTAGTTCTGCAAAGTTTCCATATGCTATCAATCTGATCTTGATT
*
62763821 TAACAAATTTAGTTC-GCAACA-TTTTCATATGCTATCAATCTGATCTTGATT
1 TAACAAATTTAGTTCTGCAA-AGTTTCCATATGCTATCAATCTGATCTTGATT
62763872 TAACAAATTTAGT
1 TAACAAATTTAGT
62763885 CCGTAATATT
Statistics
Matches: 55, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
51 52 0.95
52 3 0.05
ACGTcount: A:0.31, C:0.15, G:0.10, T:0.43
Consensus pattern (52 bp):
TAACAAATTTAGTTCTGCAAAGTTTCCATATGCTATCAATCTGATCTTGATT
Found at i:62768293 original size:15 final size:17
Alignment explanation
Indices: 62768273--62768315 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
62768263 TAGAATTTTT
62768273 ATTTTTATAAAT-TTA-
1 ATTTTTATAAATCTTAG
62768288 ATTTTT-TAAATCTTAG
1 ATTTTTATAAATCTTAG
62768304 ATTTTTCATAAA
1 ATTTTT-ATAAA
62768316 ATTATATTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
14 5 0.21
15 9 0.38
16 6 0.25
18 4 0.17
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTTTTATAAATCTTAG
Found at i:62775569 original size:78 final size:78
Alignment explanation
Indices: 62775440--62775596 Score: 296
Period size: 78 Copynumber: 2.0 Consensus size: 78
62775430 TTGCCAAGTC
*
62775440 TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGATAGTTT
1 TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGAGAGTTT
62775505 TAAATTCTGAGTT
66 TAAATTCTGAGTT
62775518 TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGAGAGTTT
1 TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGAGAGTTT
*
62775583 TAAATTCTGGGTT
66 TAAATTCTGAGTT
62775596 T
1 T
62775597 TTCTTTTTTG
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.36, C:0.11, G:0.10, T:0.42
Consensus pattern (78 bp):
TCTCAAACTTCAAAAATTTCAACTATATAATAAAATCTAAATGTTAGGTCTTTTTTAGAGAGTTT
TAAATTCTGAGTT
Found at i:62785624 original size:24 final size:24
Alignment explanation
Indices: 62785592--62785639 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
62785582 ACCCTTTGAC
62785592 GAATTAAGAAATCTTAGAATTTCT
1 GAATTAAGAAATCTTAGAATTTCT
62785616 GAATTAAGAAATCTTAGAATTTCT
1 GAATTAAGAAATCTTAGAATTTCT
62785640 TTCTTTCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.08, G:0.12, T:0.38
Consensus pattern (24 bp):
GAATTAAGAAATCTTAGAATTTCT
Found at i:62792642 original size:78 final size:79
Alignment explanation
Indices: 62792499--62792647 Score: 169
Period size: 78 Copynumber: 1.9 Consensus size: 79
62792489 AAATAGGACC
* * * * *
62792499 ATTTTGCAAAATAAGGGAAATGTAAGAGTGGTTTTATAAGAAATTATCCTTATTTTCGAATTTAG
1 ATTTTGCAAAACAAGGGAAATGTAAGAGTGGCTTGATAAGAAATTATCCCTATTTTCGAAATTAG
62792564 G-AGGGAAATGAGT
66 GTAGGGAAATGAGT
* ** * *
62792577 ATTTTGTAAAACAAGGGAAATGTGGGAGTGGCTTGAT-AGCAATT-TCCCTACTTTTTGAAAATT
1 ATTTTGCAAAACAAGGGAAATGTAAGAGTGGCTTGATAAGAAATTATCCCTA-TTTTCG-AAATT
62792640 AGGTAGGG
64 AGGTAGGG
62792648 GTTTTCAATT
Statistics
Matches: 58, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
76 5 0.09
77 11 0.19
78 38 0.66
79 4 0.07
ACGTcount: A:0.34, C:0.07, G:0.25, T:0.34
Consensus pattern (79 bp):
ATTTTGCAAAACAAGGGAAATGTAAGAGTGGCTTGATAAGAAATTATCCCTATTTTCGAAATTAG
GTAGGGAAATGAGT
Found at i:62793426 original size:16 final size:16
Alignment explanation
Indices: 62793392--62793436 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
62793382 TTTAAAAATA
*
62793392 TTTTAAAATA-CTT-T
1 TTTTAAAATATTTTAT
*
62793406 TTTTAAAATTTTTTAT
1 TTTTAAAATATTTTAT
62793422 TTTTAAAATATTTTA
1 TTTTAAAATATTTTA
62793437 AAATACTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
14 9 0.35
15 2 0.08
16 15 0.58
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTTAAAATATTTTAT
Found at i:62793459 original size:40 final size:44
Alignment explanation
Indices: 62793369--62793459 Score: 147
Period size: 40 Copynumber: 2.2 Consensus size: 44
62793359 TTATTTTTTT
62793369 ATTTTTTTATATATTTAAAAATATTTTAAAATACTTTTTTTAAA
1 ATTTTTTTATATATTTAAAAATATTTTAAAATACTTTTTTTAAA
62793413 A-TTTTTTAT-T-TTT-AAAATATTTTAAAATAC-TTTTTTAAA
1 ATTTTTTTATATATTTAAAAATATTTTAAAATACTTTTTTTAAA
62793452 ATTTTTTT
1 ATTTTTTT
62793460 TGGTGTTTAT
Statistics
Matches: 46, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
39 10 0.22
40 23 0.50
41 3 0.07
42 1 0.02
43 8 0.17
44 1 0.02
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (44 bp):
ATTTTTTTATATATTTAAAAATATTTTAAAATACTTTTTTTAAA
Found at i:62805275 original size:25 final size:25
Alignment explanation
Indices: 62805239--62805309 Score: 81
Period size: 25 Copynumber: 2.9 Consensus size: 25
62805229 GCTCGTGGAT
* *
62805239 AAGGTTCGCATGAATGTTTGCATTA
1 AAGGTTCACATGAATGTTTGCAATA
* *
62805264 AAGGTTCACATGACTGTTCGCAATA
1 AAGGTTCACATGAATGTTTGCAATA
* *
62805289 AGGGTTCACAT-AAGGTTTGCA
1 AAGGTTCACATGAATGTTTGCA
62805310 GTACAATATA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
24 7 0.18
25 31 0.82
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (25 bp):
AAGGTTCACATGAATGTTTGCAATA
Found at i:62805351 original size:25 final size:25
Alignment explanation
Indices: 62805318--62805366 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
62805308 CAGTACAATA
*
62805318 TACATAAGGGTTCACATAACAGTTT
1 TACAAAAGGGTTCACATAACAGTTT
* *
62805343 TACAAAAGGGTTCACTTAATAGTT
1 TACAAAAGGGTTCACATAACAGTT
62805367 AAAAGGATCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.14, G:0.16, T:0.33
Consensus pattern (25 bp):
TACAAAAGGGTTCACATAACAGTTT
Found at i:62807238 original size:58 final size:58
Alignment explanation
Indices: 62807144--62807264 Score: 172
Period size: 58 Copynumber: 2.1 Consensus size: 58
62807134 ATTCCAAAAA
* * *
62807144 TAATAAATTTAATATTAAATTTAATTTAATACTTATCTTAAT-AGTATTTTATTAATT
1 TAATAAACTTAATATTAAATTTAATCTAATACTTATCTTAATGAGTATTATATTAATT
* * *
62807201 TAATAAGACTTAATATTAAATTTAATCTAATATTTATCTTGATGATTATTATATTAATT
1 TAATAA-ACTTAATATTAAATTTAATCTAATACTTATCTTAATGAGTATTATATTAATT
62807260 TAATA
1 TAATA
62807265 TTAAAGTGAT
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
57 6 0.11
58 32 0.57
59 18 0.32
ACGTcount: A:0.42, C:0.04, G:0.03, T:0.50
Consensus pattern (58 bp):
TAATAAACTTAATATTAAATTTAATCTAATACTTATCTTAATGAGTATTATATTAATT
Found at i:62807722 original size:23 final size:23
Alignment explanation
Indices: 62807696--62807836 Score: 147
Period size: 23 Copynumber: 6.1 Consensus size: 23
62807686 TTTTCCAATA
* *
62807696 GGGTTCGCATAAAATTTACTAAG
1 GGGTTCGCATAACATTCACTAAG
*
62807719 GGGTTCACATAACATTCACTAAG
1 GGGTTCGCATAACATTCACTAAG
** *
62807742 ATGTTCGCATAACATTCAATAAG
1 GGGTTCGCATAACATTCACTAAG
* * *
62807765 GGGTTCACACAACATTCACAAAG
1 GGGTTCGCATAACATTCACTAAG
* * * *
62807788 AGGTTTGCATAACGTTCATTAAG
1 GGGTTCGCATAACATTCACTAAG
* *
62807811 GGGTTTGCATAACATTCATTAAG
1 GGGTTCGCATAACATTCACTAAG
62807834 GGG
1 GGG
62807837 GTCATGCGGT
Statistics
Matches: 96, Mismatches: 22, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 96 1.00
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.28
Consensus pattern (23 bp):
GGGTTCGCATAACATTCACTAAG
Found at i:62807765 original size:46 final size:46
Alignment explanation
Indices: 62807697--62807833 Score: 166
Period size: 46 Copynumber: 3.0 Consensus size: 46
62807687 TTTCCAATAG
* * *
62807697 GGTTCGCATAAAATTTACTAAGGGGTTCACATAACATTCACTAAGA
1 GGTTCGCATAACATTCAATAAGGGGTTCACATAACATTCACTAAGA
* * *
62807743 TGTTCGCATAACATTCAATAAGGGGTTCACACAACATTCACAAAGA
1 GGTTCGCATAACATTCAATAAGGGGTTCACATAACATTCACTAAGA
* * * ** *
62807789 GGTTTGCATAACGTTCATTAAGGGGTTTGCATAACATTCATTAAG
1 GGTTCGCATAACATTCAATAAGGGGTTCACATAACATTCACTAAG
62807834 GGGGTCATGC
Statistics
Matches: 76, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 76 1.00
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Consensus pattern (46 bp):
GGTTCGCATAACATTCAATAAGGGGTTCACATAACATTCACTAAGA
Found at i:62808345 original size:35 final size:35
Alignment explanation
Indices: 62808269--62808346 Score: 86
Period size: 35 Copynumber: 2.2 Consensus size: 35
62808259 TTCTTCGGGA
* * *
62808269 CGACACCGTGACAACGATTTATAGGTTCCATAGAG
1 CGACACCGTGACAACGATCTACAGGCTCCATAGAG
* * *
62808304 CCACACCGTGACAACGGTCTACAGGCTCTAT-GAAG
1 CGACACCGTGACAACGATCTACAGGCTCCATAG-AG
62808339 CGACACCG
1 CGACACCG
62808347 CAATGGCGGT
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.18
Consensus pattern (35 bp):
CGACACCGTGACAACGATCTACAGGCTCCATAGAG
Found at i:62808470 original size:27 final size:27
Alignment explanation
Indices: 62808440--62808529 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
62808430 AGTCCACTGG
* *
62808440 GACAATAAAAATGGGGTAGTCTGCCGA
1 GACAATAAAAATAGGGTAGTCCGCCGA
** *
62808467 GACAATAAAAATAGGGTAGTCCATCGG
1 GACAATAAAAATAGGGTAGTCCGCCGA
* *
62808494 GACAATAAACACAGGGTAGTCCGCCGA
1 GACAATAAAAATAGGGTAGTCCGCCGA
*
62808521 GATAATAAA
1 GACAATAAA
62808530 CATGAAGTAG
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 52 1.00
ACGTcount: A:0.41, C:0.17, G:0.26, T:0.17
Consensus pattern (27 bp):
GACAATAAAAATAGGGTAGTCCGCCGA
Found at i:62810887 original size:20 final size:20
Alignment explanation
Indices: 62810859--62810898 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
62810849 AAAATACCCT
62810859 AAACCCTAACCTTAAAATAA
1 AAACCCTAACCTTAAAATAA
*
62810879 AAACTCTAACCTTAAAATAA
1 AAACCCTAACCTTAAAATAA
62810899 GCCCTAACCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.23, G:0.00, T:0.23
Consensus pattern (20 bp):
AAACCCTAACCTTAAAATAA
Found at i:62812244 original size:16 final size:17
Alignment explanation
Indices: 62812220--62812252 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
62812210 GCATTTGGGT
62812220 GGGGAGGGGTGG-GGGG
1 GGGGAGGGGTGGAGGGG
*
62812236 GGGGTGGGGTGGAGGGG
1 GGGGAGGGGTGGAGGGG
62812253 AGGTTGAATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.06, C:0.00, G:0.85, T:0.09
Consensus pattern (17 bp):
GGGGAGGGGTGGAGGGG
Found at i:62820844 original size:2 final size:2
Alignment explanation
Indices: 62820837--62820886 Score: 100
Period size: 2 Copynumber: 25.0 Consensus size: 2
62820827 TTCCTTAACC
62820837 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
62820879 AT AT AT AT
1 AT AT AT AT
62820887 TTTCTAAGTA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 48 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:62821176 original size:20 final size:19
Alignment explanation
Indices: 62821153--62821205 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
62821143 AATAGAAAAT
*
62821153 AATTCCAAATATTTTTCAAA
1 AATTCCAAATATTTAT-AAA
**
62821173 AATTTAAAATATTTATAAA
1 AATTCCAAATATTTATAAA
62821192 AATTCCAAA-ATTTA
1 AATTCCAAATATTTA
62821206 GAAATTTTTT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
18 5 0.18
19 10 0.36
20 13 0.46
ACGTcount: A:0.51, C:0.09, G:0.00, T:0.40
Consensus pattern (19 bp):
AATTCCAAATATTTATAAA
Found at i:62849218 original size:10 final size:10
Alignment explanation
Indices: 62849203--62849236 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
62849193 AGAAAACCAC
62849203 AAAAATATGG
1 AAAAATATGG
62849213 AAAAATATGG
1 AAAAATATGG
62849223 AAAAATATGG
1 AAAAATATGG
62849233 AAAA
1 AAAA
62849237 CCACAAAACA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.65, C:0.00, G:0.18, T:0.18
Consensus pattern (10 bp):
AAAAATATGG
Found at i:62850382 original size:32 final size:32
Alignment explanation
Indices: 62850338--62850400 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
62850328 GTAGACTCGC
*
62850338 GGTGGCTCGGAGACCAAGGGTCTGAAGCAAGT
1 GGTGGCTCGGAGACCAAAGGTCTGAAGCAAGT
62850370 GGTGGC-CAGGAGACCAAAGGTCTGAAGCAAG
1 GGTGGCTC-GGAGACCAAAGGTCTGAAGCAAG
62850401 GTGCGACATT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 1 0.03
32 28 0.97
ACGTcount: A:0.29, C:0.19, G:0.40, T:0.13
Consensus pattern (32 bp):
GGTGGCTCGGAGACCAAAGGTCTGAAGCAAGT
Found at i:62853162 original size:58 final size:58
Alignment explanation
Indices: 62853093--62853206 Score: 228
Period size: 58 Copynumber: 2.0 Consensus size: 58
62853083 AGTTATTTTT
62853093 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATA
62853151 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
62853207 AAATGTTACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.41
Consensus pattern (58 bp):
TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATA
Found at i:62859901 original size:32 final size:32
Alignment explanation
Indices: 62859857--62859919 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
62859847 GTAGACTCGC
*
62859857 GGTGGCTCGGAGACCAAGGGTCTGAAGCAAGT
1 GGTGGCTCGGAGACCAAAGGTCTGAAGCAAGT
62859889 GGTGGC-CAGGAGACCAAAGGTCTGAAGCAAG
1 GGTGGCTC-GGAGACCAAAGGTCTGAAGCAAG
62859920 GTGCGACGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 1 0.03
32 28 0.97
ACGTcount: A:0.29, C:0.19, G:0.40, T:0.13
Consensus pattern (32 bp):
GGTGGCTCGGAGACCAAAGGTCTGAAGCAAGT
Found at i:62862681 original size:58 final size:58
Alignment explanation
Indices: 62862612--62862725 Score: 228
Period size: 58 Copynumber: 2.0 Consensus size: 58
62862602 AGTTATTTTT
62862612 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATA
62862670 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
1 TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATA
62862726 AAATGTTACA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.45, C:0.11, G:0.04, T:0.41
Consensus pattern (58 bp):
TTTTCACATCCATATAAATTTAACAAAATATATTAAATGTTTTAGAACTATATATATA
Found at i:62869227 original size:153 final size:155
Alignment explanation
Indices: 62869020--62869328 Score: 487
Period size: 153 Copynumber: 2.0 Consensus size: 155
62869010 GTGATTCTTG
62869020 TCCTCATATGCACATTTTGCATATAAACATAGTACAAATCTTTTGAATATATAAAAAATAAACTT
1 TCCTCATATGCACATTTTGCATATAAACATAGTACAAATCTTTTGAATATATAAAAAATAAACTT
* * * *
62869085 TAAAAAGTTTAATAAACTCGAATTC-A-AATTCCATCCAATGGGATAACATAGATTAGTGTTTTG
66 TAAAAAGTTAAATAAACTCGAATTCAACAATTCAATCAAATGGGATAACATAGATTACTGTTTTG
62869148 GTACCTAAAACTGATATAAAACCAA
131 GTACCTAAAACTGATATAAAACCAA
* **
62869173 TCCTCATATGCACATTTTGCATATAAACATGGTACAAATCTTTTGAATATATAAAAAATAAGTTT
1 TCCTCATATGCACATTTTGCATATAAACATAGTACAAATCTTTTGAATATATAAAAAATAAACTT
* *
62869238 TAAAAAGTTAAATAAACTCGAATTCAGATCCAATTCAATCAAATGGGATAACATAGGTTACTTTT
66 TAAAAAGTTAAATAAACTCGAATTCA-A--CAATTCAATCAAATGGGATAACATAGATTACTGTT
*
62869303 TTGGTACCTAAAATTGATATAAAACC
128 TTGGTACCTAAAACTGATATAAAACC
62869329 GACGAAGAAA
Statistics
Matches: 141, Mismatches: 10, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
153 86 0.61
155 1 0.01
158 54 0.38
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.33
Consensus pattern (155 bp):
TCCTCATATGCACATTTTGCATATAAACATAGTACAAATCTTTTGAATATATAAAAAATAAACTT
TAAAAAGTTAAATAAACTCGAATTCAACAATTCAATCAAATGGGATAACATAGATTACTGTTTTG
GTACCTAAAACTGATATAAAACCAA
Found at i:62870366 original size:19 final size:20
Alignment explanation
Indices: 62870326--62870367 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
62870316 ATACGTCAAC
*
62870326 AAATAATTCAAAAATTATAA
1 AAATAATTCAAAAAATATAA
*
62870346 AAAT-ATTCAAACAA-ATAA
1 AAATAATTCAAAAAATATAA
62870364 AAAT
1 AAAT
62870368 TTTAAATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 8 0.40
20 4 0.20
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (20 bp):
AAATAATTCAAAAAATATAA
Found at i:62872689 original size:14 final size:14
Alignment explanation
Indices: 62872670--62872698 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
62872660 GATTTTGATC
62872670 TAAAATAATTCAAA
1 TAAAATAATTCAAA
62872684 TAAAATAATTCAAA
1 TAAAATAATTCAAA
62872698 T
1 T
62872699 TTAATCTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.62, C:0.07, G:0.00, T:0.31
Consensus pattern (14 bp):
TAAAATAATTCAAA
Found at i:62875266 original size:9 final size:9
Alignment explanation
Indices: 62875252--62875316 Score: 55
Period size: 9 Copynumber: 7.1 Consensus size: 9
62875242 TAACAATTAT
62875252 TTTTAAAAA
1 TTTTAAAAA
62875261 TTTT-AAAA
1 TTTTAAAAA
62875269 TTTTGAAAAA
1 TTTT-AAAAA
*
62875279 -TAT-AAAA
1 TTTTAAAAA
*
62875286 TCATTTACAAA
1 T--TTTAAAAA
62875297 TTTTAAAAA
1 TTTTAAAAA
62875306 TTATTAAAAA
1 TT-TTAAAAA
62875316 T
1 T
62875317 ATAAAAAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 13
0.73 0.06 0.21
Matches are distributed among these distances:
7 4 0.09
8 8 0.18
9 15 0.33
10 14 0.31
11 4 0.09
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.42
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:62875315 original size:37 final size:36
Alignment explanation
Indices: 62875253--62875322 Score: 106
Period size: 37 Copynumber: 1.9 Consensus size: 36
62875243 AACAATTATT
62875253 TTTAAAAATTTTAAAATTTTGAAAAATATAAAATCA
1 TTTAAAAATTTTAAAATTTTGAAAAATATAAAATCA
*
62875289 TTTACAAATTTTAAAAATTATT-AAAAATATAAAA
1 TTTAAAAATTTT-AAAATT-TTGAAAAATATAAAA
62875323 AATATTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
36 11 0.35
37 18 0.58
38 2 0.06
ACGTcount: A:0.57, C:0.03, G:0.01, T:0.39
Consensus pattern (36 bp):
TTTAAAAATTTTAAAATTTTGAAAAATATAAAATCA
Found at i:62878121 original size:30 final size:29
Alignment explanation
Indices: 62878076--62878137 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 29
62878066 TTGGAGTTAA
*
62878076 TAAGAGTACTCTTGATATTTCAACACATAT
1 TAAGAGTACTCTTGATATTCCAA-ACATAT
* * *
62878106 TAAGGGTATTCTTGATATTCCAAATATAT
1 TAAGAGTACTCTTGATATTCCAAACATAT
62878135 TAA
1 TAA
62878138 TTAAATTATG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 8 0.29
30 20 0.71
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39
Consensus pattern (29 bp):
TAAGAGTACTCTTGATATTCCAAACATAT
Found at i:62878283 original size:72 final size:71
Alignment explanation
Indices: 62878205--62878340 Score: 193
Period size: 72 Copynumber: 1.9 Consensus size: 71
62878195 ATTAATATTT
* * *
62878205 TTTTATTTTTAAGTAAATGATTTTCATTTATATGAAATTAATTGTTT-TTAATTCTTGAGAGTTA
1 TTTTATTATTAACTAAATGATTTTCATTTATATCAAATT-ATT-TTTATTAATTCTTGAGAGTTA
62878269 CATTTTTG
64 CATTTTTG
* * *
62878277 TTTTATTATTAACTAAATTATTTTTATTTATATCAAATTATTTTTATTAATTTTTGAGAGTTAC
1 TTTTATTATTAACTAAATGATTTTCATTTATATCAAATTATTTTTATTAATTCTTGAGAGTTAC
62878341 CTTCTAGAAA
Statistics
Matches: 57, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
70 3 0.05
71 20 0.35
72 34 0.60
ACGTcount: A:0.31, C:0.04, G:0.08, T:0.57
Consensus pattern (71 bp):
TTTTATTATTAACTAAATGATTTTCATTTATATCAAATTATTTTTATTAATTCTTGAGAGTTACA
TTTTTG
Found at i:62878302 original size:21 final size:21
Alignment explanation
Indices: 62878277--62878325 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
62878267 TACATTTTTG
62878277 TTTTATTAT-TAACTAAATTAT
1 TTTTATTATATAAC-AAATTAT
*
62878298 TTTTATT-TATATCAAATTAT
1 TTTTATTATATAACAAATTAT
62878318 TTTTATTA
1 TTTTATTA
62878326 ATTTTTGAGA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
20 15 0.60
21 10 0.40
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (21 bp):
TTTTATTATATAACAAATTAT
Found at i:62881283 original size:15 final size:15
Alignment explanation
Indices: 62881263--62881296 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
62881253 CAATTCTCGG
62881263 TTTACTAACCCAATT
1 TTTACTAACCCAATT
*
62881278 TTTACTAACTCAATT
1 TTTACTAACCCAATT
62881293 TTTA
1 TTTA
62881297 ATATGTAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.32, C:0.21, G:0.00, T:0.47
Consensus pattern (15 bp):
TTTACTAACCCAATT
Found at i:62923529 original size:50 final size:50
Alignment explanation
Indices: 62923450--62923548 Score: 157
Period size: 50 Copynumber: 2.0 Consensus size: 50
62923440 AGGACTAGGC
*
62923450 TGCACAAGTAGAATTCATATAGAACTACTCTT-TTTCTATTTGACATTGAT
1 TGCACAAGTAGAATTCATATAGAAATACTCTTCTTT-TATTTGACATTGAT
62923500 TGCACAAGTAGAA-TCAATATAGAAATACTCTTCTTTTATTTGACATTGA
1 TGCACAAGTAGAATTC-ATATAGAAATACTCTTCTTTTATTTGACATTGA
62923549 CTACAATAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
49 2 0.04
50 41 0.89
51 3 0.07
ACGTcount: A:0.34, C:0.15, G:0.12, T:0.38
Consensus pattern (50 bp):
TGCACAAGTAGAATTCATATAGAAATACTCTTCTTTTATTTGACATTGAT
Found at i:62930381 original size:30 final size:28
Alignment explanation
Indices: 62930347--62930404 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 28
62930337 TTCTTTTCGC
62930347 TAAATTTAACTC-TCAACCTTTCGTAAAAAT
1 TAAATTTAAC-CATCAACCTTT--TAAAAAT
*
62930377 TAAATTTGACCATCAACCTTTTAAAAAT
1 TAAATTTAACCATCAACCTTTTAAAAAT
62930405 AGTTAAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
28 7 0.27
29 1 0.04
30 18 0.69
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.36
Consensus pattern (28 bp):
TAAATTTAACCATCAACCTTTTAAAAAT
Found at i:62935998 original size:9 final size:9
Alignment explanation
Indices: 62935984--62936011 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
62935974 TATAGTTTGA
62935984 TATTCGAAT
1 TATTCGAAT
62935993 TATTCGAAT
1 TATTCGAAT
62936002 TATTCGAAT
1 TATTCGAAT
62936011 T
1 T
62936012 CGAAAACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:62940195 original size:23 final size:23
Alignment explanation
Indices: 62940164--62940211 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
62940154 ATCGCGTTTA
62940164 TTCTATTTTCATTTTTACTTT-TT
1 TTCTATTTTCATTTTTA-TTTGTT
* *
62940187 TTCTCTTTTCTTTTTTATTTGTT
1 TTCTATTTTCATTTTTATTTGTT
62940210 TT
1 TT
62940212 GTGAAATAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 3 0.14
23 19 0.86
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.77
Consensus pattern (23 bp):
TTCTATTTTCATTTTTATTTGTT
Found at i:62940816 original size:27 final size:27
Alignment explanation
Indices: 62940759--62940816 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
62940749 CACGCATTTT
* ***
62940759 CTTTATATAGTATATATATACATATTT
1 CTTTATATAATATATATATACATAAAC
* *
62940786 CTTTATATAATATATATATTCTTAAAC
1 CTTTATATAATATATATATACATAAAC
62940813 CTTT
1 CTTT
62940817 TTAAATACAT
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.36, C:0.10, G:0.02, T:0.52
Consensus pattern (27 bp):
CTTTATATAATATATATATACATAAAC
Found at i:62942599 original size:16 final size:16
Alignment explanation
Indices: 62942578--62942608 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
62942568 GTTTCACTTT
62942578 GACTGCATAGCATTTA
1 GACTGCATAGCATTTA
*
62942594 GACTGCATGGCATTT
1 GACTGCATAGCATTT
62942609 CATTATAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (16 bp):
GACTGCATAGCATTTA
Found at i:62944997 original size:19 final size:19
Alignment explanation
Indices: 62944962--62945003 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
62944952 GCAAATGTTC
* *
62944962 TTTCATTCTTTACGATTTT
1 TTTCATTCTTCACGATTCT
62944981 TTTCATTCATTCA-GATTCT
1 TTTCATTC-TTCACGATTCT
62945000 TTTC
1 TTTC
62945004 TTCCAAACCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 17 0.85
20 3 0.15
ACGTcount: A:0.17, C:0.19, G:0.05, T:0.60
Consensus pattern (19 bp):
TTTCATTCTTCACGATTCT
Found at i:62947417 original size:92 final size:90
Alignment explanation
Indices: 62947246--62947491 Score: 370
Period size: 92 Copynumber: 2.7 Consensus size: 90
62947236 CAGGTTGAAA
* * * * * *
62947246 AGATAGCAAATCTTGTCTTCCCATACTGGTGGTGAAGTAGATCAAAG-AAAGTAGATCTTATCTT
1 AGATAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAAGTAGATCTTGTCTT
62947310 CATGTACTGGCGTGAAGTAGATCAG
66 CATGTACTGGCGTGAAGTAGATCAG
62947335 AGATAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGGAAAAAGTAGATCTTGTC
1 AGATAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAA-G-AAAAGTAGATCTTGTC
62947400 TTCATGTACTGGCGTGAAGTAGATCAG
64 TTCATGTACTGGCGTGAAGTAGATCAG
* * * *
62947427 AAATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG-AAAGCAGATCTTGTCTT
1 AGATAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAAGTAGATCTTGTCTT
62947491 C
66 C
62947492 CCATACTGAT
Statistics
Matches: 144, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
89 58 0.40
90 1 0.01
91 1 0.01
92 84 0.58
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (90 bp):
AGATAACAGATCTTGCCTTCCCATACTGGTGGTGAAGCAGATCGAAGAAAAGTAGATCTTGTCTT
CATGTACTGGCGTGAAGTAGATCAG
Found at i:62947571 original size:89 final size:89
Alignment explanation
Indices: 62947478--62948523 Score: 1529
Period size: 89 Copynumber: 11.7 Consensus size: 89
62947468 TCGAAGAAAG
* * * *
62947478 CAGATCTTGTCTTCCCATACTGATGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
62947543 TGGCGTGAAGTAGATCAGAGATAC
66 TGGCGTGAAGTAGATCAGAGATAC
* * *
62947567 CAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATCAAAGAAAGTAGATCTTGTC-TCAATGTA
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTC-ATGTA
62947631 CTGGCGTGAAGTAGATCAGAGATAC
65 CTGGCGTGAAGTAGATCAGAGATAC
* *
62947656 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
* *
62947721 TGGTGTGAAGTAGATCAGAGATAA
66 TGGCGTGAAGTAGATCAGAGATAC
* *
62947745 CAGATCTTGCCTTCCTATACTGGTGGCGAAGCAGATCGAAGGAAAAAACAGATCTTGTCTTCATG
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-G--AAAGCAGATCTTGTCTTCATG
62947810 TACTGGCGTGAAGTAGATCAGAGATAC
63 TACTGGCGTGAAGTAGATCAGAGATAC
* *
62947837 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTTTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
* *
62947902 TAGCGTGAAGTAGATCAGAGATAA
66 TGGCGTGAAGTAGATCAGAGATAC
* * *
62947926 CAAATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAAAAAGTAGATCTTGTCTTCATA
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-G--AAAGCAGATCTTGTCTTCATG
62947991 TACTGGCGTGAAGTAGATCAGAGATAC
63 TACTGGCGTGAAGTAGATCAGAGATAC
*
62948018 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
* *
62948083 TAGCGTGAAGTAGATCAGAGATAA
66 TGGCGTGAAGTAGATCAGAGATAC
* * *
62948107 TAAATCTTGCCTTCCCATACTGGTGGCGAAGCAGATTGAAAGAAAAAGCAGATCTTGTCTTCATG
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCG-AAG--AAAGCAGATCTTGTCTTCATG
62948172 TACTGGCGTGAAGTAGATCAGAGATAC
63 TACTGGCGTGAAGTAGATCAGAGATAC
* * *
62948199 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATATAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
* *
62948264 TGGCGTGAAGTAGATCAAAGATAA
66 TGGCGTGAAGTAGATCAGAGATAC
* * *
62948288 CAGATCTTGTCTTCCCATACTGGTGGTGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
*
62948353 TGGCGTGAAGTAGATCAAAGATAC
66 TGGCGTGAAGTAGATCAGAGATAC
* *** * * * * * *
62948377 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
*
62948441 TGGCGTGAAGTAGATCAAAGATAC
66 TGGCGTGAAGTAGATCAGAGATAC
* ** * *
62948465 CCGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAAGCGGATCTTGTCTTC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTC
62948524 CCATACTGGT
Statistics
Matches: 870, Mismatches: 75, Indels: 24
0.90 0.08 0.02
Matches are distributed among these distances:
88 79 0.09
89 536 0.62
90 7 0.01
91 5 0.01
92 243 0.28
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (89 bp):
CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
TGGCGTGAAGTAGATCAGAGATAC
Found at i:62947799 original size:270 final size:267
Alignment explanation
Indices: 62947478--62948532 Score: 1574
Period size: 270 Copynumber: 3.9 Consensus size: 267
62947468 TCGAAGAAAG
* * * *
62947478 CAGATCTTGTCTTCCCATACTGATGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
*
62947543 TGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATCAAAG
66 TGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAG
*
62947608 AAAGTAGATCTTGTC-TCAATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCC
131 AAAGCAGATCTTGTCTTC-ATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCC
* *
62947672 ATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATGTACTGGTGTGAAGTAGATC
195 ATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATATACTGGCGTGAAGTAGATC
62947737 AGAGATAA
260 AGAGATAA
* *
62947745 CAGATCTTGCCTTCCTATACTGGTGGCGAAGCAGATCGAAGGAAAAAACAGATCTTGTCTTCATG
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAA-G--AAAGCAGATCTTGTCTTCATG
62947810 TACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCA
63 TACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCA
* * * *
62947875 AAGAAAGCAGATCTTGTTTTCATGTACTAGCGTGAAGTAGATCAGAGATAACAAATCTTGCCTTC
128 AAGAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTC
*
62947940 CCATACTGGTGGCGAAGCAGATCGAAGGAAAAAGTAGATCTTGTCTTCATATACTGGCGTGAAGT
193 CCATACTGGTGGCGAAGCAGATC-AA--AGAAAGTAGATCTTGTCTTCATATACTGGCGTGAAGT
*
62948005 AGATCAGAGATAC
255 AGATCAGAGATAA
*
62948018 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
* ** * *
62948083 TAGCGTGAAGTAGATCAGAGATAATAAATCTTGCCTTCCCATACTGGTGGCGAAGCAGATTGAAA
66 TGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGA-TCAAA
62948148 GAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTC
130 G--AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTC
62948213 CCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATATACTGGCGTGAAGTAGA
193 CCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATATACTGGCGTGAAGTAGA
*
62948278 TCAAAGATAA
258 TCAGAGATAA
* * *
62948288 CAGATCTTGTCTTCCCATACTGGTGGTGAAACAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
* * *** * * * * *
62948353 TGGCGTGAAGTAGATCAAAGATACCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAG
66 TGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAG
* * * * **
62948417 AAAACAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATACCCGATCTTATCTTCCCA
131 AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCA
* * ** **
62948482 TACTGGTGGCGAAGTAGATCGAAGAAAGCGGATCTTGTCTTCCCATACTGG
196 TACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATATACTGG
62948533 TGACGAAGCA
Statistics
Matches: 716, Mismatches: 62, Indels: 21
0.90 0.08 0.03
Matches are distributed among these distances:
266 104 0.15
267 35 0.05
268 5 0.01
269 8 0.01
270 387 0.54
271 9 0.01
272 3 0.00
273 165 0.23
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (267 bp):
CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
TGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAG
AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCA
TACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCA
GAGATAA
Found at i:62947878 original size:181 final size:181
Alignment explanation
Indices: 62947478--62948523 Score: 1574
Period size: 181 Copynumber: 5.8 Consensus size: 181
62947468 TCGAAGAAAG
* * * * *
62947478 CAGATCTTGTCTTCCCATACTGATGGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
* *
62947543 TGGCGTGAAGTAGATCAGAGATACCAGATCTTGCCTTCCCATACTGGTGGCAAAGCAGATC-AA-
66 TGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG
* *
62947606 -AGAAAGTAGATCTTGTC-TCAATGTACTGGCGTGAAGTAGATCAGAGATAC
131 GAAAAAGCAGATCTTGTCTTC-ATGTACTGGCGTGAAGTAGATCAGAGATAC
*
62947656 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
* *
62947721 TGGTGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCTATACTGGTGGCGAAGCAGATCGAAG
66 TGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG
*
62947786 GAAAAAACAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAC
131 GAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAC
*
62947837 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTTTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
* *
62947902 TAGCGTGAAGTAGATCAGAGATAACAAATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG
66 TGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG
* *
62947967 GAAAAAGTAGATCTTGTCTTCATATACTGGCGTGAAGTAGATCAGAGATAC
131 GAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAC
62948018 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
* * * * *
62948083 TAGCGTGAAGTAGATCAGAGATAATAAATCTTGCCTTCCCATACTGGTGGCGAAGCAGATTGAAA
66 TGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG
62948148 GAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAC
131 GAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAC
* *
62948199 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGTAGATCTTGTCTTCATATAC
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
* * * *
62948264 TGGCGTGAAGTAGATCAAAGATAACAGATCTTGTCTTCCCATACTGGTGGTGAAACAGATCGAA-
66 TGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG
*
62948328 G--AAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAAAGATAC
131 GAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAC
* *** * * * * * * *
62948377 CAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGAAAACAGATCTTGTCTTCATGTAT
1 CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
* * * ** *
62948441 TGGCGTGAAGTAGATCAAAGATACCCGATCTTATCTTCCCATACTGGTGGCGAAGTAGATCGAA-
66 TGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG
*
62948505 G--AAAGCGGATCTTGTCTTC
131 GAAAAAGCAGATCTTGTCTTC
62948524 CCATACTGGT
Statistics
Matches: 805, Mismatches: 59, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
177 109 0.14
178 181 0.22
179 2 0.00
180 1 0.00
181 510 0.63
182 2 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (181 bp):
CAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCAAAGAAAGCAGATCTTGTCTTCATGTAC
TGGCGTGAAGTAGATCAGAGATAACAGATCTTGCCTTCCCATACTGGTGGCGAAGCAGATCGAAG
GAAAAAGCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATCAGAGATAC
Found at i:62949861 original size:3 final size:3
Alignment explanation
Indices: 62949841--62949906 Score: 55
Period size: 3 Copynumber: 21.3 Consensus size: 3
62949831 GGGTCCCTTG
** *
62949841 TTA TTAA TTA TT- TTA TTA TTA AAA TTA TTTA TTT TTA TTA -TA TTA
1 TTA TT-A TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA
62949886 TTTA TTA TTA TTGA TTA TTA T
1 -TTA TTA TTA TT-A TTA TTA T
62949907 CATATTTTCT
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
2 4 0.08
3 35 0.69
4 12 0.24
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:62949894 original size:10 final size:10
Alignment explanation
Indices: 62949864--62949906 Score: 54
Period size: 10 Copynumber: 4.5 Consensus size: 10
62949854 TATTATTAAA
62949864 ATTATTTATT
1 ATTATTTATT
*
62949874 TTTA-TTA-T
1 ATTATTTATT
62949882 ATTATTTATT
1 ATTATTTATT
*
62949892 ATTATTGATT
1 ATTATTTATT
62949902 ATTAT
1 ATTAT
62949907 CATATTTTCT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
8 4 0.14
9 6 0.21
10 18 0.64
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (10 bp):
ATTATTTATT
Found at i:62949896 original size:15 final size:15
Alignment explanation
Indices: 62949841--62949896 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 15
62949831 GGGTCCCTTG
* *
62949841 TTATTAATTATTTTA
1 TTATTTATTATTATA
**
62949856 TTA-TTAAAATTAT-
1 TTATTTATTATTATA
62949869 TTATTT-TTATTATA
1 TTATTTATTATTATA
62949883 TTATTTATTATTAT
1 TTATTTATTATTAT
62949897 TGATTATTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
13 8 0.25
14 14 0.44
15 10 0.31
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATTTATTATTATA
Found at i:62949902 original size:22 final size:20
Alignment explanation
Indices: 62949842--62949903 Score: 65
Period size: 18 Copynumber: 3.0 Consensus size: 20
62949832 GGTCCCTTGT
*
62949842 TATTAATTATTTTATTATTAA
1 TATTATTTATTTTATTATT-A
*
62949863 AATTATTTA-TTT-TTATTA
1 TATTATTTATTTTATTATTA
62949881 TATTATTTATTATTATTGATTA
1 TATTATTTATT-TTATT-ATTA
62949903 T
1 T
62949904 TATCATATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
18 9 0.26
19 6 0.18
20 5 0.15
21 9 0.26
22 5 0.15
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (20 bp):
TATTATTTATTTTATTATTA
Found at i:62963725 original size:17 final size:17
Alignment explanation
Indices: 62963703--62963736 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
62963693 ATCCACTAAT
*
62963703 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
62963720 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
62963737 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:62968364 original size:17 final size:17
Alignment explanation
Indices: 62968342--62968375 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
62968332 ATCCACTAAT
*
62968342 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
62968359 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
62968376 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:62970960 original size:19 final size:18
Alignment explanation
Indices: 62970924--62970962 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
62970914 TTTTTAAATT
* *
62970924 ATTATTTAATTAATTATA
1 ATTAATTAATTAAGTATA
62970942 ATTAATTAACTTAAGTATA
1 ATTAATTAA-TTAAGTATA
62970961 AT
1 AT
62970963 GCGAGAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.46, C:0.03, G:0.03, T:0.49
Consensus pattern (18 bp):
ATTAATTAATTAAGTATA
Found at i:62971096 original size:17 final size:18
Alignment explanation
Indices: 62971069--62971103 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
62971059 TAATTGGGTT
62971069 GAAATATAATTTAATTAA
1 GAAATATAATTTAATTAA
62971087 GAAA-ATAATTTAATTAA
1 GAAATATAATTTAATTAA
62971104 TTTATATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (18 bp):
GAAATATAATTTAATTAA
Found at i:62972547 original size:20 final size:20
Alignment explanation
Indices: 62972522--62972571 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
62972512 TGGCTTAAAA
62972522 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
62972542 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
62972559 GTGGTAGTGGATT
1 TTGGTAGTGGATT
62972572 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:62977186 original size:20 final size:20
Alignment explanation
Indices: 62977161--62977210 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
62977151 TGGCTTAAAA
62977161 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
62977181 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
62977198 GTGGTAGTGGATT
1 TTGGTAGTGGATT
62977211 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:62980313 original size:109 final size:110
Alignment explanation
Indices: 62980119--62980328 Score: 278
Period size: 109 Copynumber: 1.9 Consensus size: 110
62980109 TTAAAGTTGC
* * * * * * *
62980119 ATAACAAGTGGTTAAAATCTAAACAATGAATCAAACCCCAAATTTGTGGTCTATTGATTGACTGC
1 ATAACAAATGATTAAAATCTAAACAATGAACCAAACCCCAAAGTTGTGATCCATTGATCGACTGC
*
62980184 CTATTTTCTATAAAAATAGCCTAAATTCGAGTCATCTATGCACCT
66 CTATTTTCTATAAAAATAGCCTAAATTCAAGTCATCTATGCACCT
* ** * *
62980229 ATAACAAATGATTAAAATCTAAATAATGAACCAAA-CCGTAAGTTGTGATCCATTGATCGAGTGT
1 ATAACAAATGATTAAAATCTAAACAATGAACCAAACCCCAAAGTTGTGATCCATTGATCGACTGC
* *
62980293 TTATTTTCTATAAAAATAGCCTAGATTCAAGTCATC
66 CTATTTTCTATAAAAATAGCCTAAATTCAAGTCATC
62980329 GATGTGCCTA
Statistics
Matches: 85, Mismatches: 15, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
109 54 0.64
110 31 0.36
ACGTcount: A:0.38, C:0.17, G:0.13, T:0.32
Consensus pattern (110 bp):
ATAACAAATGATTAAAATCTAAACAATGAACCAAACCCCAAAGTTGTGATCCATTGATCGACTGC
CTATTTTCTATAAAAATAGCCTAAATTCAAGTCATCTATGCACCT
Found at i:62985687 original size:15 final size:16
Alignment explanation
Indices: 62985654--62985687 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
62985644 TTTATGCAAG
*
62985654 TATGTATATACACGTT
1 TATGTATATACAAGTT
62985670 TATGTATATA-AAGTT
1 TATGTATATACAAGTT
62985685 TAT
1 TAT
62985688 AAAAAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (16 bp):
TATGTATATACAAGTT
Found at i:62986589 original size:6 final size:6
Alignment explanation
Indices: 62986578--62986617 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
62986568 TACTTCGAAA
* *
62986578 AAAAAT AAAAAT AAAAAT AAAAA- CAAAAC AAAAAT AAAAA
1 AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAA
62986618 GAAGAGTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.85, C:0.05, G:0.00, T:0.10
Consensus pattern (6 bp):
AAAAAT
Found at i:62986605 original size:17 final size:17
Alignment explanation
Indices: 62986585--62986617 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
62986575 AAAAAAAATA
*
62986585 AAAATAAAAATAAAAAC
1 AAAACAAAAATAAAAAC
62986602 AAAACAAAAATAAAAA
1 AAAACAAAAATAAAAA
62986618 GAAGAGTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.85, C:0.06, G:0.00, T:0.09
Consensus pattern (17 bp):
AAAACAAAAATAAAAAC
Found at i:62986923 original size:18 final size:20
Alignment explanation
Indices: 62986888--62986924 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
62986878 GGTGCGGCGC
62986888 CTAGGGTTCTTTTGTTTCTG
1 CTAGGGTTCTTTTGTTTCTG
62986908 CTAGGGTT-TTTT-TTTCT
1 CTAGGGTTCTTTTGTTTCT
62986925 TTTTTTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 5 0.29
19 4 0.24
20 8 0.47
ACGTcount: A:0.05, C:0.14, G:0.22, T:0.59
Consensus pattern (20 bp):
CTAGGGTTCTTTTGTTTCTG
Found at i:62987718 original size:132 final size:132
Alignment explanation
Indices: 62987479--62987904 Score: 699
Period size: 132 Copynumber: 3.2 Consensus size: 132
62987469 GAGACAGAAT
* * *
62987479 CCTACTCCACTACTGCTTAGGGAGATAGGACTGATGGCTTAAAACTGCTTCTCCACTATCTTGGG
1 CCTACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGG
*
62987544 AAGAGAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTC
66 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTC
62987609 AA
131 AA
* * *
62987611 CTTACTCCACTACTACTTAGGGAGATAGGACAAATGGCTTAAATCTGCTTCTCCACTATCTTAGG
1 CCTACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGG
* * * *
62987676 AAGATAAGATTCACCATCTTCGATCTACTCCACTACTGCTTAGGGAGACAGAATCTTCAATTTTT
66 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTC
62987741 AA
131 AA
* * *
62987743 CCTACTCCACTACTGCTTAGGGAGATAAGACTAATGGCTGAAATCTGCTTCTCCACTATCTTGGG
1 CCTACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGG
* * *
62987808 AAGATAAGATTCACCATCTTCGATCTGCTTCACTACTGCTTAGGGGGACAGAATCTGCAATCTTC
66 AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTC
62987873 AA
131 AA
62987875 CCTACTCCACTACTACTTAGGGAGATAGGA
1 CCTACTCCACTACTACTTAGGGAGATAGGA
62987905 TCTGCAACCT
Statistics
Matches: 269, Mismatches: 25, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
132 269 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (132 bp):
CCTACTCCACTACTACTTAGGGAGATAGGACTAATGGCTTAAATCTGCTTCTCCACTATCTTGGG
AAGATAAGATTCACCATCTTCGATCTGCTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTC
AA
Found at i:62987911 original size:44 final size:43
Alignment explanation
Indices: 62987571--62987907 Score: 183
Period size: 44 Copynumber: 7.7 Consensus size: 43
62987561 CTTCGATCTG
* * *
62987571 CTCCACTACTGCTTAGGGAGACAGAATCTACAATCTTCAACTTA
1 CTCCACTACTGCTTAGGGAGATAGGATCT-CAATCTTCAACCTA
* * * *
62987615 CTCCACTACTACTTAGGGAGATAGGA-C-AAATGGCTTAAATCTGCTT
1 CTCCACTACTGCTTAGGGAGATAGGATCTCAAT--CTTCAA-C--CTA
* * * *
62987661 CTCCACTA-T-CTTAGGAAGATAAGAT-TCACCATCTTCGATCTA
1 CTCCACTACTGCTTAGGGAGATAGGATCTCA--ATCTTCAACCTA
* * * *
62987703 CTCCACTACTGCTTAGGGAGACAGAATCTTCAATTTTTAACCTA
1 CTCCACTACTGCTTAGGGAGATAGGATC-TCAATCTTCAACCTA
* ** *
62987747 CTCCACTACTGCTTAGGGAGATAAGA-CT-AATGGCTGAAATCTGCTT
1 CTCCACTACTGCTTAGGGAGATAGGATCTCAAT--CTTCAA-C--CTA
* * * *
62987793 CTCCACTA-T-CTT-GGGAAGATAAGAT-TCACCATCTTCGATCTG
1 CTCCACTACTGCTTAGGG-AGATAGGATCTCA--ATCTTCAACCTA
* * * *
62987835 CTTCACTACTGCTTAGGGGGACAGAATCTGCAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAGGATCT-CAATCTTCAACCTA
*
62987879 CTCCACTACTACTTAGGGAGATAGGATCT
1 CTCCACTACTGCTTAGGGAGATAGGATCT
62987908 GCAACCTTTA
Statistics
Matches: 218, Mismatches: 47, Indels: 56
0.68 0.15 0.17
Matches are distributed among these distances:
41 6 0.03
42 20 0.09
43 15 0.07
44 134 0.61
45 15 0.07
46 24 0.11
47 4 0.02
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (43 bp):
CTCCACTACTGCTTAGGGAGATAGGATCTCAATCTTCAACCTA
Found at i:62987985 original size:62 final size:62
Alignment explanation
Indices: 62987918--62988041 Score: 160
Period size: 62 Copynumber: 2.0 Consensus size: 62
62987908 GCAACCTTTA
* *
62987918 ATCTGCTTTGCTGCAAACT-ATGATGTCTTCGATCTACTTCATTGTCAGTACAGGAAGGCAAG
1 ATCTGCTAT-CTGCAAACTGATGATGTCTTCGATCTACTTCATCGTCAGTACAGGAAGGCAAG
* ** * * *
62987980 ATCTGCTATCTTCAGTCTGATGGTGTCTTCGATCTACTTCGTCGTCAGTATAGGAAGGCAAG
1 ATCTGCTATCTGCAAACTGATGATGTCTTCGATCTACTTCATCGTCAGTACAGGAAGGCAAG
62988042 GCTGGTGTCT
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 6 0.11
62 47 0.89
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (62 bp):
ATCTGCTATCTGCAAACTGATGATGTCTTCGATCTACTTCATCGTCAGTACAGGAAGGCAAG
Found at i:62988156 original size:89 final size:89
Alignment explanation
Indices: 62988023--62989078 Score: 1264
Period size: 89 Copynumber: 11.9 Consensus size: 89
62988013 CTACTTCGTC
* *
62988023 GTCAGTATAGGAAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
62988088 CTGCTATCTTCAGTCTGCTCTGCT
66 CTGCTATCTTCAGTCTGCTCTGCT
* * * * *
62988112 GTCAGTATA-GAGAGGCAAGGCTGATGTCTTCGATCTACTTCGCCGTCAATACAGGAAGGCAAGA
1 GTCAGTACAGGA-AGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGA
62988176 TCTGCTATCTTCAGTCTGCT-TCGCT
65 TCTGCTATCTTCAGTCTGCTCT-GCT
* * * * * *
62988201 GTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATATGCTTTGCTGTCAGTATAGGAAGGCAAAAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
* * * * **
62988266 TTACTATTTTTAGTCTGCTCCACT
66 CTGCTATCTTCAGTCTGCTCTGCT
*
62988290 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCAGTCAGTACAGGAAGGCAAGAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
*
62988355 CTGCTATCTTCAGTCTGCTCCGCT
66 CTGCTATCTTCAGTCTGCTCTGCT
* * * * *
62988379 GTCAGTACAGGAAGGCAAGGCTGGTGTCTTCGATATGCTTCGCTGTCAGTACAGGAAGGTAAAAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
* * * *
62988444 CTACTATTTTAAGTCTGCTCCGCT
66 CTGCTATCTTCAGTCTGCTCTGCT
* * * *
62988468 GTCAGTACAGGAAGGCAAGGCGGGTTTCTTCGATCTGCTTCACCGTCAGTACAGGAAGGCAAGAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
* * *
62988533 CTGCTATATTTAGTCTGCTCCGCT
66 CTGCTATCTTCAGTCTGCTCTGCT
* ** * * * *
62988557 GTCAGTACAAGAAGGCAAGGTTGGTGTCTCCGATCTGCTTCGCTGCCAGTACAGGAAGGCATGAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
* *
62988622 CTGCTATCTTTAGTCTGCT-TCACT
66 CTGCTATCTTCAGTCTGCTCT-GCT
* * * * * *
62988646 GTTAGTACAGGAAGGCAAGACTGGTTTCTTCGATCTGTTTCGCCGTTAGTACAAGAAGGCATGAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
* *
62988711 CTGCTATCTTTAGTCTGCT-TCACT
66 CTGCTATCTTCAGTCTGCTCT-GCT
* * * *
62988735 GTCAGTACAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTCACCGTCAGTACAGGGAGGCATGAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
*
62988800 CTGCTATCCTT-ATTCTGCT-TCGCT
66 CTGCTAT-CTTCAGTCTGCTCT-GCT
* * * * * * *
62988824 GTCGGTACAGAAAAGCAAGACTGGCT-TCTTCGATCTACTTCACTGTCAGTACAGGAAGGCATGA
1 GTCAGTACAGGAAGGCAAGACTGG-TGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGA
* *
62988888 TCTACTATCTTTAGTCTGCT-TCGCT
65 TCTGCTATCTTCAGTCTGCTCT-GCT
* * *
62988913 GTCAGTACAGGAAGGCAAGACTGGTTTCTTCGATCTGCTTCGCCGTCAGTACAGGAATGCATGAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
*
62988978 CTGCTATCTTCAGTCTGCTCCGCT
66 CTGCTATCTTCAGTCTGCTCTGCT
* * * * * **
62989002 GTCAGTATAAGAATGCAAGACTGGTTTCTTCGATCTGCTTCGCCATCAGTACAGGGGGGCAAGAT
1 GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
*
62989067 CTGCAATCTTCA
66 CTGCTATCTTCA
62989079 TTGATCTGTG
Statistics
Matches: 852, Mismatches: 105, Indels: 20
0.87 0.11 0.02
Matches are distributed among these distances:
88 7 0.01
89 839 0.98
90 6 0.01
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (89 bp):
GTCAGTACAGGAAGGCAAGACTGGTGTCTTCGATCTGCTTCGCCGTCAGTACAGGAAGGCAAGAT
CTGCTATCTTCAGTCTGCTCTGCT
Found at i:62991305 original size:25 final size:24
Alignment explanation
Indices: 62991257--62991322 Score: 69
Period size: 25 Copynumber: 2.5 Consensus size: 24
62991247 GGAAGAAAGA
* *
62991257 ATGAAAGAATAATTATTCATAAATG
1 ATGAAAGAAT-ATTACTCAAAAATG
62991282 ATGAAAGAATATTAGCTCAAAAATG
1 ATGAAAGAATATTA-CTCAAAAATG
62991307 ATCGCAAAGATATATT
1 AT-G-AAAGA-ATATT
62991323 TCATTAAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
24 4 0.11
25 20 0.57
26 1 0.03
27 5 0.14
28 5 0.14
ACGTcount: A:0.50, C:0.08, G:0.14, T:0.29
Consensus pattern (24 bp):
ATGAAAGAATATTACTCAAAAATG
Found at i:62992745 original size:19 final size:19
Alignment explanation
Indices: 62992721--62992760 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
62992711 TTTAAAATAC
62992721 AAAACATGATGAAAACTAT
1 AAAACATGATGAAAACTAT
62992740 AAAACATGATGAAAACTAT
1 AAAACATGATGAAAACTAT
62992759 AA
1 AA
62992761 CTCAAAATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (19 bp):
AAAACATGATGAAAACTAT
Found at i:63002814 original size:41 final size:41
Alignment explanation
Indices: 63002769--63003038 Score: 329
Period size: 41 Copynumber: 6.6 Consensus size: 41
63002759 CGGACGTTAC
63002769 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTTTAA
63002810 GTCTAGCAGGCTTAATGCCGGTGAAGTA-A-TTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTG-A-TACATTTCAGACTTTAA
63002851 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* *
63002892 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* * *
63002933 GCCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATAT
1 GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
* * *
63002974 GTCTAGCAGGC-TAAGTGTCGGTG-TAC-TGAATCAGGCTTTAA
1 GTCTAGCAGGCTTAA-TGCCGGTGATACAT--TTCAGACTTTAA
* **
63003015 GCCTAGCAGGCAAAATGCCGGTGA
1 GTCTAGCAGGCTTAATGCCGGTGA
63003039 ATCTGTTTAA
Statistics
Matches: 210, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
39 3 0.01
40 8 0.04
41 197 0.94
42 2 0.01
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (41 bp):
GTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTTTAA
Found at i:63008679 original size:20 final size:20
Alignment explanation
Indices: 63008654--63008703 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
63008644 TGGCTTAAAA
63008654 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
63008674 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
63008691 GTGGTAGTGGATT
1 TTGGTAGTGGATT
63008704 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:63013318 original size:20 final size:20
Alignment explanation
Indices: 63013293--63013342 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
63013283 TGGCTTAAAA
63013293 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
63013313 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
63013330 GTGGTAGTGGATT
1 TTGGTAGTGGATT
63013343 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:63014791 original size:30 final size:30
Alignment explanation
Indices: 63014731--63014809 Score: 97
Period size: 30 Copynumber: 2.7 Consensus size: 30
63014721 ATGGATATTA
* *
63014731 GCATGCTTCAGCTGTGTT-CCTGGTTACTT
1 GCATGCTGCAGCTGTGTTGCATGGTTACTT
* *
63014760 GCATGCTGCAGCTCTGTTGCATGGTTTCTT
1 GCATGCTGCAGCTGTGTTGCATGGTTACTT
* *
63014790 GCATGTTGCTGCTGTGTTGC
1 GCATGCTGCAGCTGTGTTGC
63014810 CACCTTTGAA
Statistics
Matches: 42, Mismatches: 7, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
29 16 0.38
30 26 0.62
ACGTcount: A:0.09, C:0.23, G:0.28, T:0.41
Consensus pattern (30 bp):
GCATGCTGCAGCTGTGTTGCATGGTTACTT
Found at i:63022000 original size:14 final size:14
Alignment explanation
Indices: 63021981--63022029 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
63021971 CTAACACACT
63021981 AAAAATGATTTTTA
1 AAAAATGATTTTTA
63021995 AAAAATGATTTTTA
1 AAAAATGATTTTTA
* * * *
63022009 GAAAGTAATTTTTG
1 AAAAATGATTTTTA
63022023 AAAAATG
1 AAAAATG
63022030 GTTAGAAGAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (14 bp):
AAAAATGATTTTTA
Found at i:63022181 original size:21 final size:20
Alignment explanation
Indices: 63022139--63022198 Score: 59
Period size: 21 Copynumber: 3.0 Consensus size: 20
63022129 CTTATGTATA
* **
63022139 TATTTTAATTAATCATGTTT
1 TATTTTAATTAATCTTAATT
63022159 TAGTTTTAATTAATCTTAATT
1 TA-TTTTAATTAATCTTAATT
* *
63022180 TA-CTTAATTAAGCTTAATT
1 TATTTTAATTAATCTTAATT
63022199 GTTAACTTCG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 15 0.44
20 2 0.06
21 17 0.50
ACGTcount: A:0.33, C:0.07, G:0.05, T:0.55
Consensus pattern (20 bp):
TATTTTAATTAATCTTAATT
Found at i:63023153 original size:36 final size:36
Alignment explanation
Indices: 63023082--63023164 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 36
63023072 CCGTTATAAA
* * *
63023082 CACTGTCATATGGCATGAATAACATACTCATATATT
1 CACTGTCACATGGCATGAAAAACACACTCATATATT
* *
63023118 TACTGTCACATGGCATGAAAAACACAC-CCTCATATT
1 CACTGTCACATGGCATGAAAAACACACTCAT-ATATT
*
63023154 CACTTTCACAT
1 CACTGTCACAT
63023165 TAGTCATCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
35 2 0.05
36 37 0.95
ACGTcount: A:0.35, C:0.25, G:0.10, T:0.30
Consensus pattern (36 bp):
CACTGTCACATGGCATGAAAAACACACTCATATATT
Found at i:63030951 original size:18 final size:19
Alignment explanation
Indices: 63030928--63030965 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
63030918 GGAAGCAAGC
*
63030928 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
63030946 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
63030965 A
1 A
63030966 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:63033504 original size:72 final size:72
Alignment explanation
Indices: 63033445--63033737 Score: 437
Period size: 72 Copynumber: 4.1 Consensus size: 72
63033435 GAATTGACAA
* **
63033445 TGGAATTTGTCCACTCAATTTGTTCCATCC-CAAGTCTAAAACAGTGAGTTGCAAGAGGTTCCCC
1 TGGAATTTGTCCACTCAATTGGTT-CATCCACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCC
63033509 AATGATCT
65 AATGATCT
* * *
63033517 TGGAATCTGTCCACTCAATTGGTTCAGCCACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCTA
1 TGGAATTTGTCCACTCAATTGGTTCATCCACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
63033582 ATGATCT
66 ATGATCT
* *
63033589 TGGAATTTGTCCACTCAATTGGTTCTTCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCATCCACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
**
63033654 ATTTTCT
66 ATGATCT
* *
63033661 TGGAATTTGTCCACTCAATTGGTTC-TCCGACAAGTCTAAATGAGTGAGTTTCAAGAGATTCCCC
1 TGGAATTTGTCCACTCAATTGGTTCATCC-ACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCC
*
63033725 AGTGATCT
65 AATGATCT
63033733 TGGAA
1 TGGAA
63033738 CCAGTCCTGA
Statistics
Matches: 200, Mismatches: 19, Indels: 4
0.90 0.09 0.02
Matches are distributed among these distances:
71 6 0.03
72 194 0.97
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (72 bp):
TGGAATTTGTCCACTCAATTGGTTCATCCACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
ATGATCT
Found at i:63035685 original size:56 final size:57
Alignment explanation
Indices: 63035573--63035703 Score: 228
Period size: 56 Copynumber: 2.3 Consensus size: 57
63035563 TACAGGTTTA
* *
63035573 ACTATCAATTGTCTATTGACTATACTTTTAACTCCACTAAAAAAGACCAAGACTAAG
1 ACTATCAATTGTCTATTGACTACACTTTTAACTCCACAAAAAAAGACCAAGACTAAG
*
63035630 ACTATCAATTGTCTATTGACTACAC-TTTAACTCGACAAAAAAAGACCAAGACTAAG
1 ACTATCAATTGTCTATTGACTACACTTTTAACTCCACAAAAAAAGACCAAGACTAAG
63035686 ACTATCAATTGTCTATTG
1 ACTATCAATTGTCTATTG
63035704 GCTTCACACT
Statistics
Matches: 71, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
56 47 0.66
57 24 0.34
ACGTcount: A:0.40, C:0.21, G:0.10, T:0.30
Consensus pattern (57 bp):
ACTATCAATTGTCTATTGACTACACTTTTAACTCCACAAAAAAAGACCAAGACTAAG
Found at i:63044955 original size:72 final size:72
Alignment explanation
Indices: 63044854--63045074 Score: 327
Period size: 72 Copynumber: 3.1 Consensus size: 72
63044844 GAATTGACAA
* *
63044854 TGGAATTTGTCCATTCAATTGGTTCTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTTTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
63044919 ATGATCT
66 ATGATCT
63044926 TGGAATTTGTCCACTCAATTGGTTTTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTTTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
63044991 ATGATCT
66 ATGATCT
* ** * * * *
63044998 TGGAATTTGTCCACTCAACTGG-TTCCCCGATAAGTCTAAATGAGTGAGTTGCAAGAGATTCCCC
1 TGGAATTTGTCCACTCAATTGGTTTTGCC-ACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCC
* *
63045062 AGTGATTT
65 AATGATCT
63045070 TGGAA
1 TGGAA
63045075 CCGGTCCTGA
Statistics
Matches: 137, Mismatches: 11, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
71 4 0.03
72 133 0.97
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (72 bp):
TGGAATTTGTCCACTCAATTGGTTTTGCCACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCA
ATGATCT
Found at i:63047387 original size:81 final size:81
Alignment explanation
Indices: 63047252--63047418 Score: 325
Period size: 81 Copynumber: 2.1 Consensus size: 81
63047242 GGAGACTGCT
63047252 ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTAAGACTATCAATTGTCTATTGACTACA
1 ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTAAGACTATCAATTGTCTATTGACTACA
63047317 CTTTAACTCGACAAAA
66 CTTTAACTCGACAAAA
*
63047333 ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTAAGACTATCAATTGTCTATTGACTTCA
1 ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTAAGACTATCAATTGTCTATTGACTACA
63047398 CTTTAACTCGACAAAA
66 CTTTAACTCGACAAAA
63047414 ACAGA
1 ACAGA
63047419 CTAATAAGAC
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 85 1.00
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (81 bp):
ACAGATTGACTATACTTTTAACTCCACAAACAAAGACTAAGACTATCAATTGTCTATTGACTACA
CTTTAACTCGACAAAA
Found at i:63047549 original size:23 final size:23
Alignment explanation
Indices: 63047519--63047564 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
63047509 ACACTTGCTG
63047519 TTGCTTCCTCCTATCTCTATCAC
1 TTGCTTCCTCCTATCTCTATCAC
63047542 TTGCTTCCTCCTATCTCTATCAC
1 TTGCTTCCTCCTATCTCTATCAC
63047565 CCAAACTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.13, C:0.39, G:0.04, T:0.43
Consensus pattern (23 bp):
TTGCTTCCTCCTATCTCTATCAC
Found at i:63049058 original size:50 final size:50
Alignment explanation
Indices: 63048996--63049115 Score: 190
Period size: 50 Copynumber: 2.4 Consensus size: 50
63048986 ACTTTTAACA
63048996 ATCAATTGTCTATTGACTATACTTTGAACTCCAC-AAAAAAGACTAAGACCT
1 ATCAATTGTCTATTGACTATACTTT-AACTCCACAAAAAAAGACTAAGA-CT
* *
63049047 -TCAATTGTCTATTGACTACACTTTAACTCGACAAAAAAAGACTAAGACT
1 ATCAATTGTCTATTGACTATACTTTAACTCCACAAAAAAAGACTAAGACT
63049096 ATCAATTGTCTATTGACTAT
1 ATCAATTGTCTATTGACTAT
63049116 CAATTGGTTC
Statistics
Matches: 64, Mismatches: 3, Indels: 5
0.89 0.04 0.07
Matches are distributed among these distances:
49 9 0.14
50 55 0.86
ACGTcount: A:0.38, C:0.20, G:0.10, T:0.32
Consensus pattern (50 bp):
ATCAATTGTCTATTGACTATACTTTAACTCCACAAAAAAAGACTAAGACT
Found at i:63052264 original size:23 final size:23
Alignment explanation
Indices: 63052147--63052266 Score: 68
Period size: 23 Copynumber: 5.3 Consensus size: 23
63052137 AAAGTGTTGC
* ** *
63052147 AAATTGAAGTGTTTTAAGTAATGC
1 AAATTGAAGTGTTTT-ATTGCTGG
*
63052171 AAATTGAATTG-TTTAGTTGCTGG
1 AAATTGAAGTGTTTTA-TTGCTGG
* *
63052194 AAATTG-AGATGTTTTATGGC-CG
1 AAATTGAAG-TGTTTTATTGCTGG
* * * * * *
63052216 TAATTG-AGTGTATAAATGTTGT
1 AAATTGAAGTGTTTTATTGCTGG
63052238 AAATTGAAGTGTTTTATTGCTGG
1 AAATTGAAGTGTTTTATTGCTGG
63052261 AAATTG
1 AAATTG
63052267 GATGCATGGT
Statistics
Matches: 69, Mismatches: 22, Indels: 11
0.68 0.22 0.11
Matches are distributed among these distances:
21 6 0.09
22 15 0.22
23 34 0.49
24 14 0.20
ACGTcount: A:0.31, C:0.04, G:0.24, T:0.41
Consensus pattern (23 bp):
AAATTGAAGTGTTTTATTGCTGG
Found at i:63052579 original size:21 final size:20
Alignment explanation
Indices: 63052533--63052580 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
63052523 AAAATAATAA
*
63052533 TTTAG-ATTATATATTATTT
1 TTTAGTATTATATATTATAT
63052552 TTATAGTATTATATATTATGAT
1 TT-TAGTATTATATATTAT-AT
63052574 TTTAGTA
1 TTTAGTA
63052581 AATTCATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
19 2 0.08
20 3 0.12
21 17 0.68
22 3 0.12
ACGTcount: A:0.33, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TTTAGTATTATATATTATAT
Found at i:63052631 original size:38 final size:37
Alignment explanation
Indices: 63052545--63052644 Score: 98
Period size: 37 Copynumber: 2.7 Consensus size: 37
63052535 TAGATTATAT
* * *
63052545 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAA
1 ATTATATTTAATAGTAAT-TATATTAAGATTTTAGTAA
*
63052582 ATTCATA--TAATAGTAATTATATTAAGAATTTTATTAA
1 ATT-ATATTTAATAGTAATTATATTAAG-ATTTTAGTAA
* *
63052619 ATTATATTTAATAATAATTATGTTAA
1 ATTATATTTAATAGTAATTATATTAA
63052645 AATATGGTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 9
0.78 0.09 0.13
Matches are distributed among these distances:
36 11 0.21
37 23 0.44
38 18 0.35
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (37 bp):
ATTATATTTAATAGTAATTATATTAAGATTTTAGTAA
Found at i:63055481 original size:23 final size:23
Alignment explanation
Indices: 63055455--63055548 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
63055445 AAGTTAGAAG
63055455 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
63055478 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
63055501 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
63055524 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
63055547 AG
1 AG
63055549 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:63059985 original size:23 final size:23
Alignment explanation
Indices: 63059959--63060052 Score: 134
Period size: 23 Copynumber: 4.1 Consensus size: 23
63059949 AAGTTAGAAG
63059959 AGTGAAGAGACTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* * *
63059982 AGTGAAAAAACTTGAATATGAAT
1 AGTGAAGAGACTTGAATATGAAA
*
63060005 AGTGAAGAGACTTGAAGATGAAA
1 AGTGAAGAGACTTGAATATGAAA
* *
63060028 AGTTAAGAGGCTTGAATATGAAA
1 AGTGAAGAGACTTGAATATGAAA
63060051 AG
1 AG
63060053 ATACACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 61 1.00
ACGTcount: A:0.48, C:0.04, G:0.26, T:0.22
Consensus pattern (23 bp):
AGTGAAGAGACTTGAATATGAAA
Found at i:63063410 original size:49 final size:50
Alignment explanation
Indices: 63063349--63063454 Score: 160
Period size: 49 Copynumber: 2.1 Consensus size: 50
63063339 CCACAAAAAA
* *
63063349 AAGACCATCAATTGTCGATTGACTATACTTTAACTCCA-AAAAAAAGACT
1 AAGACTATCAATTGTCGATTGACTACACTTTAACTCCACAAAAAAAGACT
* * *
63063398 AAGACTATCAATTGTCTATTGACTACACTTTAACTCGACAAAAAAGGACT
1 AAGACTATCAATTGTCGATTGACTACACTTTAACTCCACAAAAAAAGACT
63063448 AAGACTA
1 AAGACTA
63063455 AGACTTTCAA
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
49 34 0.67
50 17 0.33
ACGTcount: A:0.42, C:0.20, G:0.11, T:0.26
Consensus pattern (50 bp):
AAGACTATCAATTGTCGATTGACTACACTTTAACTCCACAAAAAAAGACT
Found at i:63086846 original size:28 final size:28
Alignment explanation
Indices: 63086786--63086850 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 28
63086776 AGTTTTTTTA
* ** *
63086786 AAAATATTTTCAATTTTTTTTTAATTTT
1 AAAATATTTTCAATCTTTTTAAAATTAT
63086814 AAAATATTTTCAATCTTTTTAAAACTTAT
1 AAAATATTTTCAATCTTTTTAAAA-TTAT
63086843 -AAATATTT
1 AAAATATTT
63086851 AAACATAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 29 0.91
29 3 0.09
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.55
Consensus pattern (28 bp):
AAAATATTTTCAATCTTTTTAAAATTAT
Found at i:63090521 original size:72 final size:72
Alignment explanation
Indices: 63090445--63090948 Score: 839
Period size: 72 Copynumber: 7.0 Consensus size: 72
63090435 GAATTGACAA
* * *
63090445 TGGAATTTGTCCACTCAATTGGTTCTGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATCAGTGAGTTGCAAGAGGTTCCCCA
*
63090510 ATGATAT
66 ATGATCT
**
63090517 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGTTTAAATCAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATCAGTGAGTTGCAAGAGGTTCCCCA
63090582 ATGATCT
66 ATGATCT
* *
63090589 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGTCTAAATCAGTGAGTTGCAAGAGGTTGCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATCAGTGAGTTGCAAGAGGTTCCCCA
63090654 ATGATCT
66 ATGATCT
*
63090661 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATTAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATCAGTGAGTTGCAAGAGGTTCCCCA
63090726 ATGATCT
66 ATGATCT
* * * *
63090733 TGGAATTTTTTCACTCAATTGGTTCTGCCACAAGCCTAAATGAGTGACTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATCAGTGAGTTGCAAGAGGTTCCCCA
63090798 ATGATCT
66 ATGATCT
* * *
63090805 TGGAATTTTTCCACTCAATTGGTTCTGCCACAAACCTAAATCAGTGAGTTGCAAGAGATTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATCAGTGAGTTGCAAGAGGTTCCCCA
63090870 ATGATCT
66 ATGATCT
*
63090877 TGGAATATT-TCCACTCAATTGGTTCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGGTTCCCC
1 TGGAAT-TTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATCAGTGAGTTGCAAGAGGTTCCCC
63090941 AATGATCT
65 AATGATCT
63090949 GCCACAAGCC
Statistics
Matches: 410, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
72 408 1.00
73 2 0.00
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (72 bp):
TGGAATTTGTCCACTCAATTGGTTCTGCCACAAGCCTAAATCAGTGAGTTGCAAGAGGTTCCCCA
ATGATCT
Found at i:63090953 original size:46 final size:46
Alignment explanation
Indices: 63090900--63090994 Score: 181
Period size: 46 Copynumber: 2.1 Consensus size: 46
63090890 CTCAATTGGT
63090900 TCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGA
1 TCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGA
*
63090946 TCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGTTTCCCCAATGA
1 TCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGA
63090992 TCT
1 TCT
63090995 TGGAATTTGT
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.24
Consensus pattern (46 bp):
TCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGA
Found at i:63091008 original size:118 final size:118
Alignment explanation
Indices: 63090828--63091066 Score: 392
Period size: 118 Copynumber: 2.0 Consensus size: 118
63090818 CTCAATTGGT
63090828 TCTGCCACAAACCTAAATCAGTGAGTTGCAAGAGATTCCCCAATGATCTTGGAATATTTCCACTC
1 TCTGCCACAAACCTAAATCAGTGAGTTGCAAGAGATTCCCCAATGATCTTGGAATATTTCCACTC
*
63090893 AATTGGTTCTGC-CACAAGCCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGA
66 AATTGGTTCT-CACACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCAATGA
* * *
63090946 TCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGTTTCCCCAATGATCTTGGAAT-TTGTCCACT
1 TCTGCCACAAACCTAAATCAGTGAGTTGCAAGAGATTCCCCAATGATCTTGGAATATT-TCCACT
* *
63091010 CAATTGGTTCTCACACAAGTCTAAATAAGTGAGTTGCAAGAGGTTCTCCAATGA
65 CAATTGGTTCTCACACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCAATGA
63091064 TCT
1 TCT
63091067 TGGAATTTGT
Statistics
Matches: 113, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
117 3 0.03
118 110 0.97
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (118 bp):
TCTGCCACAAACCTAAATCAGTGAGTTGCAAGAGATTCCCCAATGATCTTGGAATATTTCCACTC
AATTGGTTCTCACACAAGCCTAAATAAGTGAGTTGCAAGAGGTTCCCCAATGA
Found at i:63091044 original size:72 final size:72
Alignment explanation
Indices: 63090951--63091142 Score: 294
Period size: 72 Copynumber: 2.7 Consensus size: 72
63090941 AATGATCTGC
* * * *
63090951 CACAAGCCTAAATGAGTGAGTTGCAAGAGTTTCCCCAATGATCTTGGAATTTGTCCACTCAATTG
1 CACAAGTCTAAATAAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTCAATAG
63091016 GTTCTCA
66 GTTCTCA
*
63091023 CACAAGTCTAAATAAGTGAGTTGCAAGAGGTTCTCCAATGATCTTGGAATTTGTCCACTCAATAG
1 CACAAGTCTAAATAAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTCAATAG
**
63091088 GTTCTGT
66 GTTCTCA
* * *
63091095 GACAAGTCTAAATAAGCGAGTTGCAAGAGGTTCCCCAGTGATCTTGGA
1 CACAAGTCTAAATAAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGA
63091143 CCCGGTCCTG
Statistics
Matches: 109, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 109 1.00
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (72 bp):
CACAAGTCTAAATAAGTGAGTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTCAATAG
GTTCTCA
Found at i:63091082 original size:190 final size:190
Alignment explanation
Indices: 63090756--63091138 Score: 599
Period size: 190 Copynumber: 2.0 Consensus size: 190
63090746 CTCAATTGGT
*
63090756 TCTGCCACAAGCCTAAATGAGTGACTTGCAAGAGGTTCCCCAATGATCTTGGAATTTTTCCACTC
1 TCTGCCACAAGCCTAAATGAGTGACTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTC
*
63090821 AATTGGTTCTGCCACAAACCTAAATCAGTGAGTTGCAAGAGATTCCCCAATGATCTTGGAATATT
66 AATTGGTTCTGCCACAAACCTAAATAAGTGAGTTGCAAGAGATTCCCCAATGATCTTGGAATATT
* * *
63090886 TCCACTCAATTGGTTCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGGTTCCCCAATGA
131 TCCACTCAATAGGTTCTGCCACAAGCCTAAATAAGCGAGTTGCAAGAGGTTCCCCAATGA
* *
63090946 TCTGCCACAAGCCTAAATGAGTGAGTTGCAAGAGTTTCCCCAATGATCTTGGAATTTGTCCACTC
1 TCTGCCACAAGCCTAAATGAGTGACTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTC
** * *
63091011 AATTGGTTCT-CACACAAGTCTAAATAAGTGAGTTGCAAGAGGTTCTCCAATGATCTTGGAAT-T
66 AATTGGTTCTGC-CACAAACCTAAATAAGTGAGTTGCAAGAGATTCCCCAATGATCTTGGAATAT
** * *
63091074 TGTCCACTCAATAGGTTCTGTGACAAGTCTAAATAAGCGAGTTGCAAGAGGTTCCCCAGTGA
130 T-TCCACTCAATAGGTTCTGCCACAAGCCTAAATAAGCGAGTTGCAAGAGGTTCCCCAATGA
63091136 TCT
1 TCT
63091139 TGGACCCGGT
Statistics
Matches: 176, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
189 3 0.02
190 173 0.98
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (190 bp):
TCTGCCACAAGCCTAAATGAGTGACTTGCAAGAGGTTCCCCAATGATCTTGGAATTTGTCCACTC
AATTGGTTCTGCCACAAACCTAAATAAGTGAGTTGCAAGAGATTCCCCAATGATCTTGGAATATT
TCCACTCAATAGGTTCTGCCACAAGCCTAAATAAGCGAGTTGCAAGAGGTTCCCCAATGA
Found at i:63092722 original size:29 final size:29
Alignment explanation
Indices: 63092690--63092745 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
63092680 TCATCTTCTT
*
63092690 TAACCCTTAAACTTATATTGTTTATCAAA
1 TAACCCTTAAACTTACATTGTTTATCAAA
*
63092719 TAACCCTTAAACTTGCATTGTTTATCA
1 TAACCCTTAAACTTACATTGTTTATCA
63092746 GATGAAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.34, C:0.20, G:0.05, T:0.41
Consensus pattern (29 bp):
TAACCCTTAAACTTACATTGTTTATCAAA
Found at i:63094010 original size:3 final size:3
Alignment explanation
Indices: 63094002--63094030 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63093992 ATTGTTAATC
63094002 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
63094031 GCACCACTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:63098286 original size:16 final size:16
Alignment explanation
Indices: 63098253--63098286 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
63098243 TCATGATGTT
* *
63098253 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
63098269 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
63098285 AA
1 AA
63098287 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:63103579 original size:13 final size:13
Alignment explanation
Indices: 63103561--63103590 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
63103551 ATAATATTAC
63103561 ATAACTAAACTAA
1 ATAACTAAACTAA
*
63103574 ATAACTAAATTAA
1 ATAACTAAACTAA
63103587 ATAA
1 ATAA
63103591 TATTATAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (13 bp):
ATAACTAAACTAA
Found at i:63111497 original size:3 final size:3
Alignment explanation
Indices: 63111489--63111517 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
63111479 ATTGTTAATC
63111489 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
63111518 GTTAACACCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:63113031 original size:21 final size:22
Alignment explanation
Indices: 63113005--63113051 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
63112995 CTCTGCTCAA
*
63113005 ACTCCACCTGCTGCGGAGTAC-
1 ACTCCACCTGCTGCGAAGTACT
63113026 ACTCCACCTGCTGCGAAGTACT
1 ACTCCACCTGCTGCGAAGTACT
63113048 ACTC
1 ACTC
63113052 ACTCCTTCTG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.38, G:0.19, T:0.21
Consensus pattern (22 bp):
ACTCCACCTGCTGCGAAGTACT
Found at i:63123873 original size:20 final size:20
Alignment explanation
Indices: 63123845--63123884 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
63123835 TATATTACTC
*
63123845 TTTTATTGTTATTTTTATTT
1 TTTTATTGTTACTTTTATTT
*
63123865 TTTTCTTGTTACTTTTATTT
1 TTTTATTGTTACTTTTATTT
63123885 GTTATTATTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.78
Consensus pattern (20 bp):
TTTTATTGTTACTTTTATTT
Found at i:63134998 original size:72 final size:72
Alignment explanation
Indices: 63134891--63135182 Score: 498
Period size: 72 Copynumber: 4.1 Consensus size: 72
63134881 GAATTGACAA
* *
63134891 TGGAATTTGTCCACTCAATTGGTTCTGCGAGAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTATGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
63134956 ATGATCT
66 ATGATCT
*
63134963 TGGAATTTGTCCACTCAATTGGTTCCAT-C-CCAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCC
1 TGGAATTTGTCCACTCAATTGGTT--ATGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCC
63135026 CAATGATCT
64 CAATGATCT
* * *
63135035 TGGAATTTGTCCACTCAATTGGTTATGCGACAAGTCTAAATGAGTGAGTTGGAACAGGTTCCCGA
1 TGGAATTTGTCCACTCAATTGGTTATGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
63135100 ATGATCT
66 ATGATCT
63135107 TGGAATTTGTCCACTCAATTGGTTATGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
1 TGGAATTTGTCCACTCAATTGGTTATGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
63135172 ATGATCT
66 ATGATCT
63135179 TGGA
1 TGGA
63135183 GCCGGTCCTG
Statistics
Matches: 206, Mismatches: 10, Indels: 8
0.92 0.04 0.04
Matches are distributed among these distances:
70 2 0.01
71 1 0.00
72 201 0.98
73 1 0.00
74 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30
Consensus pattern (72 bp):
TGGAATTTGTCCACTCAATTGGTTATGCGACAAGTCTAAATGAGTGAGTTGCAAGAGGTTCCCCA
ATGATCT
Found at i:63136758 original size:19 final size:19
Alignment explanation
Indices: 63136734--63136775 Score: 75
Period size: 19 Copynumber: 2.2 Consensus size: 19
63136724 TTCTCTCATC
63136734 GCTGCTTCTTTGATCCTCT
1 GCTGCTTCTTTGATCCTCT
*
63136753 GCTGCTTCTTTGATCCTTT
1 GCTGCTTCTTTGATCCTCT
63136772 GCTG
1 GCTG
63136776 GTGCTGGTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.05, C:0.29, G:0.19, T:0.48
Consensus pattern (19 bp):
GCTGCTTCTTTGATCCTCT
Done.