Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 22 of 199
Found at i:8988158 original size:33 final size:33
Alignment explanation
Indices: 8988089--8988185 Score: 106
Period size: 33 Copynumber: 2.8 Consensus size: 33
8988079 CTATACCCAT
* * *
8988089 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
8988126 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
8988159 CTATGCCGAATGCA-ACATATATATATA
1 CTATGCCGAATGCATACACATAAATATA
8988186 CATATCTATC
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 11 0.20
33 22 0.40
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.23, G:0.10, T:0.30
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:8988444 original size:41 final size:41
Alignment explanation
Indices: 8988399--8988554 Score: 235
Period size: 41 Copynumber: 3.8 Consensus size: 41
8988389 ACCGGCTCTT
*
8988399 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8988440 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
8988481 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
8988522 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
8988555 TAACGATAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
39 2 0.02
40 2 0.02
41 98 0.92
42 2 0.02
43 3 0.03
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:8989063 original size:21 final size:23
Alignment explanation
Indices: 8989039--8989086 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 23
8989029 AATATATATA
8989039 TATTTC-AC-TCATACTTTTAAT
1 TATTTCAACATCATACTTTTAAT
*
8989060 TATTTCAACTATCATATTTTTAAT
1 TATTTCAAC-ATCATACTTTTAAT
8989084 TAT
1 TAT
8989087 ATTTCATCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
21 6 0.26
22 2 0.09
24 15 0.65
ACGTcount: A:0.31, C:0.15, G:0.00, T:0.54
Consensus pattern (23 bp):
TATTTCAACATCATACTTTTAAT
Found at i:8990868 original size:116 final size:116
Alignment explanation
Indices: 8990664--8990897 Score: 405
Period size: 116 Copynumber: 2.0 Consensus size: 116
8990654 CTAAATGTGT
8990664 ATAACACATTAAAACAACATTATCCATACTATCACTATTTTCCTCTATGTCAATTCAAACTGTCT
1 ATAACACATTAAAACAACATTATCCATACTATCACTATTTTCCTCTATGTCAATTCAAACTGTCT
*
8990729 GTCTGAGTCTGAGTCACTAATTTATTTATATCTCGAGCTACAGAGCTCCAA
66 GTCTGAGTCAGAGTCACTAATTTATTTATATCTCGAGCTACAGAGCTCCAA
* * * * **
8990780 ATAACACATTTAAACAACATTATCCATACTATCATTATTTTCTTGTATGTCAATTCAAGTTGTCT
1 ATAACACATTAAAACAACATTATCCATACTATCACTATTTTCCTCTATGTCAATTCAAACTGTCT
8990845 GTCTGAGTCAGAGTCACTAATTTATTTATATCTCGAGCTACAGAGCTCCAA
66 GTCTGAGTCAGAGTCACTAATTTATTTATATCTCGAGCTACAGAGCTCCAA
8990896 AT
1 AT
8990898 TAAGATCCGT
Statistics
Matches: 111, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
116 111 1.00
ACGTcount: A:0.32, C:0.21, G:0.10, T:0.36
Consensus pattern (116 bp):
ATAACACATTAAAACAACATTATCCATACTATCACTATTTTCCTCTATGTCAATTCAAACTGTCT
GTCTGAGTCAGAGTCACTAATTTATTTATATCTCGAGCTACAGAGCTCCAA
Found at i:8993148 original size:22 final size:22
Alignment explanation
Indices: 8993123--8993171 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
8993113 TTTTTAAAAT
*
8993123 TTTTAAATAT-ATATTTATATTA
1 TTTTAAATATAATATTTA-ATGA
* *
8993145 TTTTTAATTTAATATTTAATGA
1 TTTTAAATATAATATTTAATGA
8993167 TTTTA
1 TTTTA
8993172 TGTTTATTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
22 15 0.68
23 7 0.32
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (22 bp):
TTTTAAATATAATATTTAATGA
Found at i:9000954 original size:36 final size:36
Alignment explanation
Indices: 9000907--9000978 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
9000897 GAGTGAGACA
9000907 TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
1 TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
* *
9000943 TTGAATGTGATGGGATAGGTGTAGTGGAGGTAGGTG
1 TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
9000979 GCGTATTTGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.25, C:0.00, G:0.46, T:0.29
Consensus pattern (36 bp):
TTGAATGTGATGGAAAAGGTGTAGTGGAGGTAGGTG
Found at i:9004495 original size:29 final size:29
Alignment explanation
Indices: 9004462--9004517 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
9004452 CAAAAAAGCC
9004462 ATTTTTTCAAAATTTACCGAAATGGGTCG
1 ATTTTTTCAAAATTTACCGAAATGGGTCG
* **
9004491 ATTTTTTGATTATTTACCGAAATGGGT
1 ATTTTTTCAAAATTTACCGAAATGGGT
9004518 AATTTTCCGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.43
Consensus pattern (29 bp):
ATTTTTTCAAAATTTACCGAAATGGGTCG
Found at i:9005458 original size:27 final size:28
Alignment explanation
Indices: 9005408--9005461 Score: 74
Period size: 29 Copynumber: 1.9 Consensus size: 28
9005398 TTCGCGGAAA
*
9005408 TGGCCCATTCCGGTAAATAATTAAAAATG
1 TGGCCCATTCCGATAAAT-ATTAAAAATG
*
9005437 TGGCCCATTTCGATAAAT-TTAAAAA
1 TGGCCCATTCCGATAAATATTAAAAA
9005462 AAGACTTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 7 0.30
29 16 0.70
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (28 bp):
TGGCCCATTCCGATAAATATTAAAAATG
Found at i:9007147 original size:16 final size:16
Alignment explanation
Indices: 9007126--9007156 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9007116 TTAATGAAAG
9007126 ATTTAGATAGCTTAGA
1 ATTTAGATAGCTTAGA
*
9007142 ATTTAGATAGTTTAG
1 ATTTAGATAGCTTAG
9007157 GCAGAGCCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.03, G:0.19, T:0.42
Consensus pattern (16 bp):
ATTTAGATAGCTTAGA
Found at i:9013476 original size:5 final size:5
Alignment explanation
Indices: 9013466--9013494 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
9013456 ATCACTATAT
9013466 ATGTA ATGTA ATGTA ATGTA ATGT- ATGTA
1 ATGTA ATGTA ATGTA ATGTA ATGTA ATGTA
9013495 GGTATAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (5 bp):
ATGTA
Found at i:9025201 original size:20 final size:20
Alignment explanation
Indices: 9025176--9025225 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
9025166 ATTAATTATT
*
9025176 TATAAAATTTACTTAAAATA
1 TATAAAATATACTTAAAATA
* * *
9025196 TATAAACTATATTTTAAATA
1 TATAAAATATACTTAAAATA
9025216 TAT-AAATATA
1 TATAAAATATA
9025226 ACCATTAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.54, C:0.04, G:0.00, T:0.42
Consensus pattern (20 bp):
TATAAAATATACTTAAAATA
Found at i:9026023 original size:30 final size:32
Alignment explanation
Indices: 9025982--9026041 Score: 88
Period size: 30 Copynumber: 1.9 Consensus size: 32
9025972 TATATCATAA
*
9025982 ATTATAAAAAAAA-TTCTAACTA-TACATTTT
1 ATTAAAAAAAAAACTTCTAACTACTACATTTT
9026012 ATTAAAAAAAAAACTTTCTAACTACTACAT
1 ATTAAAAAAAAAAC-TTCTAACTACTACAT
9026042 ATAATCAATA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 12 0.46
32 9 0.35
33 5 0.19
ACGTcount: A:0.52, C:0.13, G:0.00, T:0.35
Consensus pattern (32 bp):
ATTAAAAAAAAAACTTCTAACTACTACATTTT
Found at i:9028019 original size:22 final size:20
Alignment explanation
Indices: 9027983--9028040 Score: 57
Period size: 20 Copynumber: 2.8 Consensus size: 20
9027973 GGTTCGGCCT
9027983 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
9028005 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
*
9028026 A-GTATTTTAAAAATA
1 ATTTATTTTAAAAATA
9028041 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 2 0.06
20 11 0.33
21 5 0.15
22 7 0.21
23 8 0.24
ACGTcount: A:0.53, C:0.03, G:0.02, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:9028042 original size:11 final size:11
Alignment explanation
Indices: 9028022--9028129 Score: 72
Period size: 11 Copynumber: 10.4 Consensus size: 11
9028012 TTAAAAATTA
9028022 AAAAAGTATTTT
1 AAAAA-TATTTT
9028034 AAAAATATTTT
1 AAAAATATTTT
*
9028045 --AAA-A-TTA
1 AAAAATATTTT
* *
9028052 AAAAATA-ATA
1 AAAAATATTTT
9028062 AAAAATTATTTT
1 AAAAA-TATTTT
9028074 AAAAATATTTT
1 AAAAATATTTT
*
9028085 --AAA-ATTTA
1 AAAAATATTTT
* *
9028093 AAAAATA-ATA
1 AAAAATATTTT
9028103 AAAAATTATTTT
1 AAAAA-TATTTT
9028115 AAAAATATTTT
1 AAAAATATTTT
9028126 AAAA
1 AAAA
9028130 TTTAAAAAAT
Statistics
Matches: 78, Mismatches: 8, Indels: 21
0.73 0.07 0.20
Matches are distributed among these distances:
7 2 0.03
8 5 0.06
9 9 0.12
10 18 0.23
11 27 0.35
12 17 0.22
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:9028063 original size:10 final size:10
Alignment explanation
Indices: 9028014--9028149 Score: 77
Period size: 9 Copynumber: 13.6 Consensus size: 10
9028004 AATTTATTTT
9028014 AAAA-ATTAA
1 AAAATATTAA
*
9028023 AAAAGTATTTTA
1 AAAA-TA-TTAA
*
9028035 AAAATATT-T
1 AAAATATTAA
*
9028044 TAAA-ATTAA
1 AAAATATTAA
*
9028053 AAAATAATAA
1 AAAATATTAA
*
9028063 AAAATTATTTTA
1 AAAA-TA-TTAA
**
9028075 AAAATATTTT
1 AAAATATTAA
9028085 AAAAT-TTAA
1 AAAATATTAA
*
9028094 AAAATAATAA
1 AAAATATTAA
*
9028104 AAAATTATTTTA
1 AAAA-TA-TTAA
**
9028116 AAAATATTTT
1 AAAATATTAA
9028126 AAAAT-TTAA
1 AAAATATTAA
9028135 AAAAT-TTAA
1 AAAATATTAA
9028144 AAAATA
1 AAAATA
9028150 AATATATTTA
Statistics
Matches: 99, Mismatches: 17, Indels: 21
0.72 0.12 0.15
Matches are distributed among these distances:
8 3 0.03
9 33 0.33
10 33 0.33
11 11 0.11
12 19 0.19
ACGTcount: A:0.62, C:0.00, G:0.01, T:0.37
Consensus pattern (10 bp):
AAAATATTAA
Found at i:9028066 original size:29 final size:30
Alignment explanation
Indices: 9028008--9028077 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 30
9027998 ACCAAAAATT
* **
9028008 TATTTTAAAAATTAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATTAAAAAAGTAATAAAAAAA
*
9028039 TATTTTAAAATTAAAAAA-TAATAAAAAAT
1 TATTTTAAAATTAAAAAAGTAATAAAAAAA
9028068 TATTTTAAAA
1 TATTTTAAAA
9028078 ATATTTTAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 17 0.49
30 12 0.34
31 6 0.17
ACGTcount: A:0.60, C:0.00, G:0.01, T:0.39
Consensus pattern (30 bp):
TATTTTAAAATTAAAAAAGTAATAAAAAAA
Found at i:9028079 original size:30 final size:32
Alignment explanation
Indices: 9028001--9028079 Score: 103
Period size: 30 Copynumber: 2.6 Consensus size: 32
9027991 AATAAATACC
* *
9028001 AAAAATTTATTTTAAAAATTAAAAAAGTATTT
1 AAAAAATTATTTTAAAAATTAAAAAAGTATAT
*
9028033 TAAAAA-TATTTT-AAAATTAAAAAA-TA-AT
1 AAAAAATTATTTTAAAAATTAAAAAAGTATAT
9028061 AAAAAATTATTTTAAAAAT
1 AAAAAATTATTTTAAAAAT
9028080 ATTTTAAAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
28 6 0.15
29 8 0.20
30 17 0.41
31 6 0.15
32 4 0.10
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (32 bp):
AAAAAATTATTTTAAAAATTAAAAAAGTATAT
Found at i:9028094 original size:41 final size:41
Alignment explanation
Indices: 9028020--9028148 Score: 226
Period size: 41 Copynumber: 3.2 Consensus size: 41
9028010 TTTTAAAAAT
*
9028020 TAAAAAAGTATTTTAAAAATATTTTAAAA-TTAAAAAATAA
1 TAAAAAATTATTTTAAAAATATTTTAAAATTTAAAAAATAA
9028060 TAAAAAATTATTTTAAAAATATTTTAAAATTTAAAAAATAA
1 TAAAAAATTATTTTAAAAATATTTTAAAATTTAAAAAATAA
*
9028101 TAAAAAATTATTTTAAAAATATTTTAAAATTTAAAAAAT-T
1 TAAAAAATTATTTTAAAAATATTTTAAAATTTAAAAAATAA
9028141 TAAAAAAT
1 TAAAAAAT
9028149 AAATATATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
40 36 0.42
41 50 0.58
ACGTcount: A:0.61, C:0.00, G:0.01, T:0.38
Consensus pattern (41 bp):
TAAAAAATTATTTTAAAAATATTTTAAAATTTAAAAAATAA
Found at i:9028472 original size:24 final size:23
Alignment explanation
Indices: 9028434--9028546 Score: 64
Period size: 24 Copynumber: 5.2 Consensus size: 23
9028424 TTAATATATG
* *
9028434 AAATATAAATTTTAAATATTTTT
1 AAATATAAATATTAAATATTTAT
*
9028457 AAATAATAAATATTAATTATTTAT
1 AAAT-ATAAATATTAAATATTTAT
**
9028481 AAA-ATTTA-ATTAGAATA--TAT
1 AAATATAAATATTA-AATATTTAT
*
9028501 AAACTAT--ATTTTAAATA-TT-T
1 AAA-TATAAATATTAAATATTTAT
**
9028521 AAATATAACCATTAAATATTTA-
1 AAATATAAATATTAAATATTTAT
9028543 AAAT
1 AAAT
9028547 TAGTATTTTA
Statistics
Matches: 70, Mismatches: 10, Indels: 21
0.69 0.10 0.21
Matches are distributed among these distances:
19 3 0.04
20 15 0.21
21 15 0.21
22 14 0.20
23 4 0.06
24 19 0.27
ACGTcount: A:0.52, C:0.03, G:0.01, T:0.44
Consensus pattern (23 bp):
AAATATAAATATTAAATATTTAT
Found at i:9031450 original size:26 final size:25
Alignment explanation
Indices: 9031419--9031491 Score: 105
Period size: 25 Copynumber: 3.0 Consensus size: 25
9031409 ACAATTAATT
9031419 AATTTTTTACAATTTAAAAAATTAA
1 AATTTTTTACAATTTAAAAAATTAA
9031444 AATTTTTTACAATTTAAAAAATTAA
1 AATTTTTTACAATTTAAAAAATTAA
* * *
9031469 AA-ATTTTA-ATTTTACAAAATTAA
1 AATTTTTTACAATTTAAAAAATTAA
9031492 TTAATTACTT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 13 0.29
24 5 0.11
25 27 0.60
ACGTcount: A:0.52, C:0.04, G:0.00, T:0.44
Consensus pattern (25 bp):
AATTTTTTACAATTTAAAAAATTAA
Found at i:9045940 original size:60 final size:60
Alignment explanation
Indices: 9045847--9045969 Score: 246
Period size: 60 Copynumber: 2.0 Consensus size: 60
9045837 CCGGCAGTCA
9045847 TGGGATTTAAAGGAGGCACAAAGTTCCGCACCTCCCACCGTGGAACTGCAGCATATCAAC
1 TGGGATTTAAAGGAGGCACAAAGTTCCGCACCTCCCACCGTGGAACTGCAGCATATCAAC
9045907 TGGGATTTAAAGGAGGCACAAAGTTCCGCACCTCCCACCGTGGAACTGCAGCATATCAAC
1 TGGGATTTAAAGGAGGCACAAAGTTCCGCACCTCCCACCGTGGAACTGCAGCATATCAAC
9045967 TGG
1 TGG
9045970 TGTGTTTTAG
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 63 1.00
ACGTcount: A:0.29, C:0.28, G:0.24, T:0.19
Consensus pattern (60 bp):
TGGGATTTAAAGGAGGCACAAAGTTCCGCACCTCCCACCGTGGAACTGCAGCATATCAAC
Found at i:9046161 original size:4 final size:4
Alignment explanation
Indices: 9046152--9046180 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
9046142 TGTGAGTATC
9046152 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
9046181 ATCCGAGTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:9056370 original size:24 final size:24
Alignment explanation
Indices: 9056341--9056396 Score: 71
Period size: 24 Copynumber: 2.4 Consensus size: 24
9056331 AGTGTCCAAA
*
9056341 TTTCTTTAACTT-GTTTACCGTCAG
1 TTTCTTTAA-TTCGTTTACCATCAG
*
9056365 TTTCTTCAATTCGTTTACCATCAG
1 TTTCTTTAATTCGTTTACCATCAG
9056389 TTT-TTTAA
1 TTTCTTTAA
9056397 GCACAAAAGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 6 0.21
24 22 0.79
ACGTcount: A:0.20, C:0.20, G:0.09, T:0.52
Consensus pattern (24 bp):
TTTCTTTAATTCGTTTACCATCAG
Found at i:9064099 original size:11 final size:10
Alignment explanation
Indices: 9064083--9064121 Score: 51
Period size: 11 Copynumber: 3.7 Consensus size: 10
9064073 TGACTTCTGA
9064083 ATTTTTTTTT
1 ATTTTTTTTT
9064093 CATTTTTTGTTT
1 -ATTTTTT-TTT
*
9064105 ATTTTTTCTT
1 ATTTTTTTTT
9064115 ATTTTTT
1 ATTTTTT
9064122 GTGATTTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.35
11 14 0.54
12 3 0.12
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (10 bp):
ATTTTTTTTT
Found at i:9070772 original size:32 final size:31
Alignment explanation
Indices: 9070727--9070822 Score: 174
Period size: 31 Copynumber: 3.1 Consensus size: 31
9070717 CTTAGATAAT
9070727 TTTAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
9070758 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
9070790 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
9070821 TT
1 TT
9070823 GTAATTTGCC
Statistics
Matches: 63, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
31 33 0.52
32 30 0.48
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:9071408 original size:9 final size:9
Alignment explanation
Indices: 9071396--9071449 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
9071386 CAACAGCAAA
9071396 AAAAAAAGC
1 AAAAAAAGC
9071405 AAAAAAAGC
1 AAAAAAAGC
*
9071414 GCAAAAAAGC
1 -AAAAAAAGC
**
9071424 GCAAAAAGC
1 AAAAAAAGC
*
9071433 AAAAAAGCGC
1 AAAAAA-AGC
9071443 AAAAAAA
1 AAAAAAA
9071450 AAGTTGCCTA
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
9 20 0.56
10 16 0.44
ACGTcount: A:0.70, C:0.15, G:0.15, T:0.00
Consensus pattern (9 bp):
AAAAAAAGC
Found at i:9071434 original size:17 final size:17
Alignment explanation
Indices: 9071414--9071447 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
9071404 CAAAAAAAGC
9071414 GCAAAAAAGCGCAAAAA
1 GCAAAAAAGCGCAAAAA
9071431 GCAAAAAAGCGCAAAAA
1 GCAAAAAAGCGCAAAAA
9071448 AAAAGTTGCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.65, C:0.18, G:0.18, T:0.00
Consensus pattern (17 bp):
GCAAAAAAGCGCAAAAA
Found at i:9074526 original size:32 final size:31
Alignment explanation
Indices: 9074481--9074576 Score: 156
Period size: 31 Copynumber: 3.1 Consensus size: 31
9074471 CTTAGATAAT
*
9074481 TTTAAAGAGTTTTATTAGGATTCAATTATTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
*
9074512 TTTAAAGAGTTTTTATTAGGATTCAATTACCC
1 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
*
9074544 TTGAAAGAGTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTATTAGGATTCAATTACTC
9074575 TT
1 TT
9074577 GTAATTTGCC
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
31 32 0.53
32 28 0.47
ACGTcount: A:0.31, C:0.09, G:0.14, T:0.46
Consensus pattern (31 bp):
TTTAAAGAGTTTTATTAGGATTCAATTACTC
Found at i:9076322 original size:3 final size:3
Alignment explanation
Indices: 9076314--9076339 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
9076304 GACTAACAAT
9076314 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
9076340 TTTTTTTTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:9085768 original size:17 final size:19
Alignment explanation
Indices: 9085725--9085768 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 19
9085715 TTGAAATTCC
9085725 TTAT-TAAAATTTAGAAAA
1 TTATATAAAATTTAGAAAA
*
9085743 TTCTA-AAAA-TTA-AAAA
1 TTATATAAAATTTAGAAAA
9085759 TTATATAAAA
1 TTATATAAAA
9085769 ATAGATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 5
0.76 0.07 0.17
Matches are distributed among these distances:
16 8 0.36
17 7 0.32
18 7 0.32
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.36
Consensus pattern (19 bp):
TTATATAAAATTTAGAAAA
Found at i:9090545 original size:27 final size:27
Alignment explanation
Indices: 9090515--9090595 Score: 64
Period size: 27 Copynumber: 3.2 Consensus size: 27
9090505 TAATTATTAT
9090515 TCAATATACATGTATTTAAGGATAAAA
1 TCAATATACATGTATTTAAGGATAAAA
* * ** * *
9090542 TCAATGT--AT-T-TATAATTAT-TAT
1 TCAATATACATGTATTTAAGGATAAAA
*
9090564 TCAATATACATGTATTCAAGGATAAAA
1 TCAATATACATGTATTTAAGGATAAAA
9090591 TCAAT
1 TCAAT
9090596 GTTGGAACCT
Statistics
Matches: 36, Mismatches: 13, Indels: 10
0.61 0.22 0.17
Matches are distributed among these distances:
22 7 0.19
23 6 0.17
24 3 0.08
25 3 0.08
26 5 0.14
27 12 0.33
ACGTcount: A:0.44, C:0.09, G:0.09, T:0.38
Consensus pattern (27 bp):
TCAATATACATGTATTTAAGGATAAAA
Found at i:9090573 original size:49 final size:49
Alignment explanation
Indices: 9090501--9090597 Score: 185
Period size: 49 Copynumber: 2.0 Consensus size: 49
9090491 ACTTCTTCTT
*
9090501 TTTATAATTATTATTCAATATACATGTATTTAAGGATAAAATCAATGTA
1 TTTATAATTATTATTCAATATACATGTATTCAAGGATAAAATCAATGTA
9090550 TTTATAATTATTATTCAATATACATGTATTCAAGGATAAAATCAATGT
1 TTTATAATTATTATTCAATATACATGTATTCAAGGATAAAATCAATGT
9090598 TGGAACCTTA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (49 bp):
TTTATAATTATTATTCAATATACATGTATTCAAGGATAAAATCAATGTA
Found at i:9091914 original size:5 final size:5
Alignment explanation
Indices: 9091895--9091956 Score: 87
Period size: 5 Copynumber: 13.0 Consensus size: 5
9091885 GTAAGTAATA
9091895 ATTAT ATT-T -TTAT ATTAT ATTATT ATTA- A-TAT ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT ATTAT ATTA-T ATTAT ATTAT ATTAT ATTAT ATTAT
9091942 ATTAT ATTAT ATTAT
1 ATTAT ATTAT ATTAT
9091957 TATATATATG
Statistics
Matches: 52, Mismatches: 0, Indels: 10
0.84 0.00 0.16
Matches are distributed among these distances:
3 4 0.08
4 4 0.08
5 39 0.75
6 5 0.10
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTAT
Found at i:9091918 original size:8 final size:8
Alignment explanation
Indices: 9091895--9091961 Score: 57
Period size: 8 Copynumber: 7.9 Consensus size: 8
9091885 GTAAGTAATA
9091895 ATTATATT
1 ATTATATT
*
9091903 TTTATATT
1 ATTATATT
9091911 A-TATTATT
1 ATTA-TATT
9091919 ATTA-ATAT
1 ATTATAT-T
9091927 ATTATATTAT
1 ATTATA-T-T
9091937 ATTATATTAT
1 ATTATA-T-T
9091947 ATTATATT
1 ATTATATT
9091955 ATTATAT
1 ATTATAT
9091962 ATATGACAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
7 4 0.08
8 25 0.48
9 4 0.08
10 19 0.37
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (8 bp):
ATTATATT
Found at i:9092031 original size:40 final size:40
Alignment explanation
Indices: 9091974--9092069 Score: 147
Period size: 40 Copynumber: 2.4 Consensus size: 40
9091964 ATGACAAAGA
9091974 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
* *
9092015 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
*
9092055 AAGGAAGGAAAGAAA
1 AA-GAAAGAAAGAAA
9092070 GAAAGAAAAG
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
40 33 0.66
41 17 0.34
ACGTcount: A:0.64, C:0.08, G:0.28, T:0.00
Consensus pattern (40 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAGAAGG
Found at i:9092295 original size:13 final size:13
Alignment explanation
Indices: 9092277--9092308 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9092267 TTTCCAGCAA
9092277 TTATGAATTTATT
1 TTATGAATTTATT
9092290 TTATGAATTTATT
1 TTATGAATTTATT
*
9092303 TGATGA
1 TTATGA
9092309 TGATCCGAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:9092516 original size:50 final size:50
Alignment explanation
Indices: 9092403--9092644 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
9092393 ATTTGGCTAA
* * *
9092403 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
9092459 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
9092509 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
9092559 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
9092609 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
9092645 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:9092592 original size:100 final size:103
Alignment explanation
Indices: 9092403--9092652 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
9092393 ATTTGGCTAA
9092403 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
9092468 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
9092509 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
9092571 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
9092609 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
9092653 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:9093994 original size:17 final size:16
Alignment explanation
Indices: 9093974--9094019 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
9093964 TATATATGTA
9093974 TAATAAATATATAAAAT
1 TAATAAATAT-TAAAAT
*
9093991 TAATAATTATTAAAAT
1 TAATAAATATTAAAAT
9094007 CT-ATAAA-ATTAAA
1 -TAATAAATATTAAA
9094020 CTTTAATAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 6 0.23
16 10 0.38
17 10 0.38
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
TAATAAATATTAAAAT
Found at i:9094006 original size:16 final size:17
Alignment explanation
Indices: 9093974--9094006 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
9093964 TATATATGTA
9093974 TAATAAATATATAAAAT
1 TAATAAATATATAAAAT
*
9093991 TAATAATTAT-TAAAAT
1 TAATAAATATATAAAAT
9094007 CTATAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATAAATATATAAAAT
Found at i:9096282 original size:17 final size:16
Alignment explanation
Indices: 9096253--9096287 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
9096243 CAGTATAATA
9096253 ATAATAAATATATATT
1 ATAATAAATATATATT
*
9096269 ATAATAATTAATATATT
1 ATAATAAAT-ATATATT
9096286 AT
1 AT
9096288 GTACTACTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
ATAATAAATATATATT
Found at i:9098778 original size:46 final size:46
Alignment explanation
Indices: 9098732--9098889 Score: 255
Period size: 46 Copynumber: 3.4 Consensus size: 46
9098722 CCATTAAAAT
* * * *
9098732 ACCATACCTACTTTTCATAACTCAGTATGGTTTTCTTTA-TCGAAAT
1 ACCATACCTACTTTTCACAACTCAGTATGATTTTCTTCACT-GAAAC
9098778 ACCATACCTACTTTTCACAACTCAGTATGATTTTCTTCACTGAAAC
1 ACCATACCTACTTTTCACAACTCAGTATGATTTTCTTCACTGAAAC
9098824 ACCATACCTACTTTTCACAACTCAGTATGATTTTCTTCACTGAAAC
1 ACCATACCTACTTTTCACAACTCAGTATGATTTTCTTCACTGAAAC
*
9098870 ACCATACCTTCTTTTCACAA
1 ACCATACCTACTTTTCACAA
9098890 TTTGCCATGG
Statistics
Matches: 106, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
46 105 0.99
47 1 0.01
ACGTcount: A:0.30, C:0.27, G:0.06, T:0.37
Consensus pattern (46 bp):
ACCATACCTACTTTTCACAACTCAGTATGATTTTCTTCACTGAAAC
Found at i:9099561 original size:12 final size:12
Alignment explanation
Indices: 9099544--9099577 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
9099534 GACACTCCAT
9099544 AAATATTTATAA
1 AAATATTTATAA
9099556 AAATATTTATAA
1 AAATATTTATAA
9099568 AAATATTTAT
1 AAATATTTAT
9099578 GGCTTGGCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
AAATATTTATAA
Found at i:9100304 original size:25 final size:27
Alignment explanation
Indices: 9100275--9100337 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
9100265 ACAACTCTTA
*
9100275 TGAGCGTCCCGTA-TAT-GGCTCTTTG
1 TGAGCTTCCCGTATTATAGGCTCTTTG
* *
9100300 TGAGCTTCCC-AATTATAGGCTTTTTG
1 TGAGCTTCCCGTATTATAGGCTCTTTG
9100326 TGAGCTTCCCGT
1 TGAGCTTCCCGT
9100338 TATTGTTCGC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
24 1 0.03
25 12 0.39
26 18 0.58
ACGTcount: A:0.14, C:0.24, G:0.24, T:0.38
Consensus pattern (27 bp):
TGAGCTTCCCGTATTATAGGCTCTTTG
Found at i:9102565 original size:22 final size:21
Alignment explanation
Indices: 9102526--9102566 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
9102516 AAAAAAATTA
**
9102526 TAAAATATAAAATGAATATGG
1 TAAAATATAAAAAAAATATGG
9102547 TAAAATATTAAAAAAAATAT
1 TAAAATA-TAAAAAAAATAT
9102567 TTAAAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.29
Consensus pattern (21 bp):
TAAAATATAAAAAAAATATGG
Found at i:9102571 original size:21 final size:21
Alignment explanation
Indices: 9102516--9102577 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
9102506 CTCTATAAGT
9102516 AAAAAAAT-TATAAAATA-TA
1 AAAAAAATATATAAAATATTA
** *
9102535 AAATGAATATGGTAAAATATTA
1 AAAAAAATAT-ATAAAATATTA
* *
9102557 AAAAAAATATTTAAAAAATTA
1 AAAAAAATATATAAAATATTA
9102578 CTAATAGTTG
Statistics
Matches: 33, Mismatches: 7, Indels: 4
0.75 0.16 0.09
Matches are distributed among these distances:
19 6 0.18
20 1 0.03
21 16 0.48
22 10 0.30
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (21 bp):
AAAAAAATATATAAAATATTA
Found at i:9110863 original size:368 final size:366
Alignment explanation
Indices: 9110009--9111274 Score: 1944
Period size: 366 Copynumber: 3.5 Consensus size: 366
9109999 TAACAAGCCT
* * * * *
9110009 AACTAGAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCATGCGTTTTGTGTGCAGAGAT
1 AACTAGAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGAC
* * * *
9110074 TATGGGAACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGAGTTGCATCAATGAG
66 TATGGAAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAATGAC
* * * *
9110139 TGATCACACCCACAAAAAGTTCGTAATTAATGAAATCCGCAAAAGGTTGTATTTATGCATGTTTT
131 TGATGACATCTACAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGTTGTATTTATGCATGTTTT
* * *
9110204 GCGTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCCAACTGTAACAACTTGCAT
196 GCTTTAGACTTTTATTATCTTTTGTTCGTACAGAATACACAAATTCCAACTGTAACAACTTGCAT
* * *
9110269 TATTGCTGGAACT-AAAAAAGATATATAAATTTAAGGAAGAAAAAAATTATTATTGACAAATGGC
261 TATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAG-AAAAAATGATTATCGACAAATGGC
* * *
9110333 ACCTCCTCTTACCAAAGAGGTTTTAATAATAGCGTAACGCCC
325 ACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTC
* *
9110375 AACTAGAATCACATAAGCTTTTTTATT-CAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGA
1 AACTAGAATCACGTAAGCTTTTTT-TTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGA
* * * * *
9110439 CTAT-GAGAACAAATAAATGATATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATTAGTG
65 CTATGGA-AACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAATG
**
9110503 ACTGATGACATCTACAAAAAGTTCGTAATTAATGAAATCTATAAAAGGTTGTATTTATGCATGTT
129 ACTGATGACATCTACAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGTTGTATTTATGCATGTT
* * * *
9110568 TTGCTTTAGACTTTTATTATCTTTTGTTCGTACAAAATACAAAAATTCCAACTGTAATAACATGC
194 TTGCTTTAGACTTTTATTATCTTTTGTTCGTACAGAATACACAAATTCCAACTGTAACAACTTGC
* *
9110633 ATTATTGTTGGAACTAAAAAAAAGATATATAAATTTAAGGAAGAAAAAATGATAATCAACAAATG
259 ATTATTGTTGGAACT-AAAAAAAGATATATAAATTTAAGGAAGAAAAAATGATTATCGACAAATG
9110698 GCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTC
323 GCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTC
*
9110742 AACTAGATTCACGTAAGCTTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGA
1 AACTAGAATCACGTAAGC-TTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGA
* * *
9110807 CTATGGAAACAAATAAGGGGCATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAATGG
65 CTATGGAAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAATGA
* * *
9110872 CTGATGACATATACAAAAAGTTCGTAATTAATTATATCCGTAAAAGGTTGTATTTATGCATGTTT
130 CTGATGACATCTACAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGTTGTATTTATGCATGTTT
9110937 TGCTTTAGACTTTTATTATCTTTTGTTCGTACAGAATACACAAATTCCAACTGTAACAACTTGCA
195 TGCTTTAGACTTTTATTATCTTTTGTTCGTACAGAATACACAAATTCCAACTGTAACAACTTGCA
*
9111002 TTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAGATGATTATCGACAAATGGC
260 TTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAATGATTATCGACAAATGGC
* * * *
9111067 ACCACATTTTCCCAAAGAGGTTTCAATAATAGCGTAACACTC
325 ACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTC
* * *
9111109 AACTAGAATCACGTAAACTTTTTTTGCCAACGTCAGAATATCTCACGTGCTTCGTGTGCAGAGAC
1 AACTAGAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGAC
* * * *
9111174 TATGAAAACAAATAAATGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTACATCAGTGAC
66 TATGGAAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAATGAC
* *
9111239 TGGTGACATCTACAAAAAGTTCGTAATTAATAAAAT
131 TGATGACATCTACAAAAAGTTCGTAATTAATGAAAT
9111275 TCACAAAATG
Statistics
Matches: 818, Mismatches: 75, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
365 1 0.00
366 377 0.46
367 181 0.22
368 257 0.31
369 2 0.00
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.31
Consensus pattern (366 bp):
AACTAGAATCACGTAAGCTTTTTTTTCCAACGTAAGAATATCTCACGTGCTTCGTGTGCAGAGAC
TATGGAAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAATGAC
TGATGACATCTACAAAAAGTTCGTAATTAATGAAATCCGTAAAAGGTTGTATTTATGCATGTTTT
GCTTTAGACTTTTATTATCTTTTGTTCGTACAGAATACACAAATTCCAACTGTAACAACTTGCAT
TATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAATGATTATCGACAAATGGCA
CCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCTC
Found at i:9112430 original size:71 final size:71
Alignment explanation
Indices: 9112310--9112588 Score: 397
Period size: 71 Copynumber: 4.0 Consensus size: 71
9112300 TAGACCAAAG
* * * *
9112310 CACAAGATTATTTTCACTCTTTTATTTAAGTTGCTGCCCACGTGCATATACTTTTTTTAAGTTGA
1 CACAAGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGA
9112375 TTCTCA
66 TTCTCA
* *
9112381 CACTAGATTATTTTCACTTTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGA
1 CACAAGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGA
9112446 TTCTCA
66 TTCTCA
* * * *
9112452 TACGAGATTATTTTCACTCTTTTATTTAAGTTGCTACCTACGTACATATACTTTCTTCAAATTGA
1 CACAAGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGA
9112517 TTCTCA
66 TTCTCA
* * * *
9112523 CACAAGATTATTTTTACTATTTTATTAAAGTTGCTACCCATGTAC----A-TTTCTTCAAGTTGA
1 CACAAGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGA
9112583 TTCTCA
66 TTCTCA
9112589 AACTTTAAAA
Statistics
Matches: 189, Mismatches: 19, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
66 19 0.10
67 1 0.01
71 169 0.89
ACGTcount: A:0.26, C:0.20, G:0.09, T:0.45
Consensus pattern (71 bp):
CACAAGATTATTTTCACTCTTTTATTTAAGTTGCTACCCACGTACATATACTTTCTTCAAGTTGA
TTCTCA
Found at i:9116182 original size:12 final size:12
Alignment explanation
Indices: 9116167--9116191 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9116157 AATCAAGGAG
9116167 AAAAAGAAAGAA
1 AAAAAGAAAGAA
9116179 AAAAAGAAAGAA
1 AAAAAGAAAGAA
9116191 A
1 A
9116192 TGTTTATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAGAA
Found at i:9117552 original size:365 final size:364
Alignment explanation
Indices: 9116880--9117962 Score: 1557
Period size: 365 Copynumber: 3.0 Consensus size: 364
9116870 GATCATTCTA
* * *
9116880 TGTATTTATGCATGTGTTGCTTTGGACTTTTACTATCTCTTATTCGTACAGAATACATAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTCC
* * *
9116945 AACTTTAACAACCTGCATTATTTTTGGAACTAAAAAAAGATATATAAATTTAAGAAAG-AAAAAT
66 AACTGTAACAACCTGCATTATTGTT-GAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
*
9117009 GATTATCGACAAATGACACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAATGCCCAAC-AA
130 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAATGCCCAACTAA
* * * *
9117073 GAATCACGTAAGCCTTTTTTTCAAACGTAAGAAAATCTCACGTGTTTTGTGTGCAGAGATTATGA
195 -AATCACGTAAG-CTTTTTTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGA
* *
9117138 GAACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATC
258 GAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTAGGTGTTGCATCAGTGACTGATC
*
9117203 ACACCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGT
323 ACATCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGT
* * *
9117245 TGTATTTATGCATGTTTTGATTTGGACTTTTATTATCTCTTGTTCGCACAGAATACACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTCC
*
9117310 AACTGTAACAACCTGCATTATTGTTGAA-GATAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGAACTA-AAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * *
9117374 GATTATCGACAAATGGCACCACTTATTACCAAAGAGGTTTCAATAATAACGTAATGCCCAACTAA
130 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAATGCCCAACTAA
* * * * * *
9117439 AATCACATAAGCATTTATTTCCAACCTAATAATATCTCACGTGCTTTGTGTGCAGAGACTATCAT
195 AATCACGTAAGC-TTTTTTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAG
* *
9117504 AACAAATAAAGGACATCTTACTTGATTCACCAAACTCCATTAGGTGTTGCATTAGTGACTGA-CG
259 AACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTAGGTGTTGCATCAGTGACTGATC-
*
9117568 ACATCTACAAAAAGTTTGTAATTAATGAAATCCGCAAAAGGT
323 ACATCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGT
* *
9117610 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATTTCTTATTCGTACAGAATACACAAATTCT
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTCC
* *
9117675 AACTGTAACAACCTGCATTATTGTTGGACCTAAAAAAAGATATATAAACTTAAGGAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTT-GAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * * * * * * **
9117740 GATTATCAACAAATGGGACCACCTCTTACGAAAGATGTTTCAATGATTGTGTAACGCTTAACTAA
130 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAATGCCCAACTAA
* *
9117805 AATCACGTAAGCTTTTTTTTCAACGTAAGAATATCTCACGTGCTTCGTGTG-AGAGACTATGAGA
195 AATCACGTAAGCTTTTTTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAGA
* *
9117869 ACAAATAAATGACATCTTACTAGAATATTCACCAATCTCCATTCA-GTGTTGCATCAGTGACTGA
260 ACAAATAAAGGACATCTTACTAG---ATTCACCAAACTCCATT-AGGTGTTGCATCAGTGACTGA
* * * *
9117933 TGACATCTACAAAAAGATCGTCATTAATGA
321 TCACATCTACAAAAAGTTTGTAATTAATGA
9117963 CATCCGGAAA
Statistics
Matches: 639, Mismatches: 67, Indels: 22
0.88 0.09 0.03
Matches are distributed among these distances:
363 1 0.00
364 62 0.10
365 416 0.65
366 99 0.15
367 60 0.09
368 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (364 bp):
TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGTACAGAATACACAAATTCC
AACTGTAACAACCTGCATTATTGTTGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAATG
ATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAATGCCCAACTAAA
ATCACGTAAGCTTTTTTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAGAA
CAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTAGGTGTTGCATCAGTGACTGATCACA
TCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGT
Found at i:9119834 original size:365 final size:365
Alignment explanation
Indices: 9119163--9120246 Score: 1586
Period size: 365 Copynumber: 3.0 Consensus size: 365
9119153 GATCATTCTA
* * * * *
9119163 TGTATTTATGCATGTGTCGCTTTGGACTTTTACTATCTCTTATTCGTACAGAATACATAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGCACAGAATACACAAATTCC
* *
9119228 AACTGTACCAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* *
9119293 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACACCCAACTAG
131 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAA
* * * * *
9119358 AATCACGTAAGCTTTTTTTTCAAACGTAAGAAAATCTCACGTGTTTTGTGTGCAGAGATTATGAG
196 AATCACGTAAGC-TTTTTTTCCAACATAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAG
* *
9119423 AACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGATCA
260 AACAAATAATGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGATCA
9119488 CACTTACAAAAAGTTTGTAATTAATGAAATCATG-AAAAGGG
325 CACTTACAAAAAGTTTGTAATTAATGAAATCA-GCAAAAGGG
*
9119529 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGCACAGAATACACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGCACAGAATACACAAATTCC
*
9119594 AACTGTAACAACCTGCATTATTGTT-GAA-GATAAAAAAGATATATAAATTTAAGGAAGAAAAAA
66 AACTGTAACAACCTGCATTATTGTTGGAACTA-AAAAAAGATATATAAATTTAAGGAAGAAAAAA
* *
9119657 TGATTATCGACAAATGGCACCACCTATTACCAAAGAGGTTTCAATAATAGCGTAATGCCCAACTA
130 TGATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTA
* * * *
9119722 AAATCACATAAGCATTTATTTCCAACCTAATAATATCTCACGTGCTTTGTGTGCAGAGACTATGA
195 AAATCACGTAAGC-TTTTTTTCCAACATAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGA
* *
9119787 TAACAAATAATGGACATCTTATTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGATC
259 GAACAAATAATGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGATC
* *
9119852 ACACCTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGT
324 ACACTTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGG
*
9119894 TGTATTTATGCATGTTTTGCTTTGGAGTTTTATTATCTCTTATTCGCACAGAATACACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGCACAGAATACACAAATTCC
* * *
9119959 AACTGTAACAACCTGTACTATTGTTGGAACTAAAAAAAGATATATAAACTTAAGGAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
* * * * * * *
9120024 GATTATCGACAAATGGGACCACCTCTTACGAAAGATGTTTCAATGATTGTGTAACGCTCAACTAA
131 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAA
* * * *
9120089 AATCACGTAAGCTTTTTTTTCAACATAAGAATATCTCACTTGCTTCGTGTG-AGTGACTATGAGA
196 AATCACGTAAGCTTTTTTTCCAACATAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAGA
* * **
9120153 ACAAATAAAT-GACATCTTACTAGAATATTCACCAATCTCCGTTCAGTGTTGCATCAGTGACTGA
261 ACAAAT-AATGGACATCTTACTAG---ATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGA
* * * *
9120217 TGACA-TCTACAAAAAGATCGTCATTAATGA
322 TCACACT-TACAAAAAGTTTGTAATTAATGA
9120247 CATCCGGAAA
Statistics
Matches: 647, Mismatches: 62, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
364 31 0.05
365 372 0.57
366 185 0.29
367 59 0.09
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.31
Consensus pattern (365 bp):
TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTATTCGCACAGAATACACAAATTCC
AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAA
AATCACGTAAGCTTTTTTTCCAACATAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAGA
ACAAATAATGGACATCTTACTAGATTCACCAAACTCCATTGGGTGTTGCATCAGTGACTGATCAC
ACTTACAAAAAGTTTGTAATTAATGAAATCAGCAAAAGGG
Found at i:9120764 original size:12 final size:12
Alignment explanation
Indices: 9120749--9120773 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9120739 AATCAAGGAG
9120749 AAAAAGAAAGAA
1 AAAAAGAAAGAA
9120761 AAAAAGAAAGAA
1 AAAAAGAAAGAA
9120773 A
1 A
9120774 TGTTTATCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAGAA
Found at i:9122431 original size:368 final size:365
Alignment explanation
Indices: 9121462--9122557 Score: 1680
Period size: 365 Copynumber: 3.0 Consensus size: 365
9121452 GATTATTCTA
* * * * *
9121462 TGTATTTATGAATGTGTTGCTTTGGACTTTTATTATCTCTTATTCGTACAAAATACATAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
*** *
9121527 AACTGTAATTGCCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGAAAGAAAAAAT
66 AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
9121592 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAG
131 GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAG
* * * * *
9121657 AATCACGTAAGCTTTTT-TTTCAAACGAAAGAATATCTCACATGTTTTGTGTGCAGAGATTATGA
196 AATCACGTAAG-TTTTTATTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGA
* * * *
9121721 GAACAAATAAAGGACATCTTACTAGATTCGCCAAACTCCATTGGGTGTTGCATCAGTGACTGGTC
260 GAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATT-GGTGTTGCATTAGTGACTGATG
* *
9121786 ACACCTACAAAAAGTT-TGTAATTAATGAAATCAGCAAAAGGT
324 ACATCTACAAAAAGTTCT-TAATTAATGAAATCCGCAAAAGGT
* *
9121828 TGTATTTATGCATGTTTTGATTTGGACTTTTATTATCTCTTGTTCGCACAGAATACACAAATTCC
1 TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
*
9121893 AACTGTAACAACCTGCATTATTGTT-GAA-GATAAAAAAGATATATAAATTTAAGGAAGAAAAAA
66 AACTGTAACAACCTGCATTATTGTTGGAACTA-AAAAAAGATATATAAATTTAAGGAAGAAAAAA
* *
9121956 TGATTATCGACAAATGGCACCACCTATTACCAAAGAGGTTTCAATAATAGCGTAATGCCCAACTA
130 TGATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTA
* * ** * *
9122021 AAATCACATAAGCATTTATTTCCAACCTAATAATATCTCACGTGCTTTGTGTGCAGAGACTATGA
195 GAATCACGTAAGTTTTTATTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGA
*
9122086 TAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTAGGTGTTGCATTAGTGACTGATG
260 GAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATT-GGTGTTGCATTAGTGACTGATG
*
9122151 ACATCTACAAAAAATTCTTAATTAATGAAATCCGCAAAAGGT
324 ACATCTACAAAAAGTTCTTAATTAATGAAATCCGCAAAAGGT
* *
9122193 TGTATTTATATGCTTGTTTTGCTTTGGACTTTTATTATCTCTTGCTCGTACAGAATACACAAATT
1 TGTA-TT-TATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATT
*
9122258 CTAACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAA
64 CCAACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAA
* *
9122323 ATGATTATTGACAAATGGCACCACCTCTT-CGCAAAGAGGTTTCAATAATAGCGTAACACCCAAC
129 ATGATTATCGACAAATGGCACCACCTCTTAC-CAAAGAGGTTTCAATAATAGCGTAACGCCCAAC
9122387 TAGAATCACGTAAGTTTTTATTTCCAACGTAAGAATATCTCACGTGCTTTTGTGTGCAGAGACTA
193 TAGAATCACGTAAGTTTTTATTTCCAACGTAAGAATATCTCACGTGC-TTTGTGTGCAGAGACTA
* * *
9122452 TGAGAACAAATAAAGAACATCTTACTAGATTCACCAAACTTCATTGGTGTTGCATTTGTGACTGA
257 TGAGAACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGTGTTGCATTAGTGACTGA
* * *
9122517 TGAGATCTACAAAAAGTTCGTAATTAATGAAATTCGCAAAA
322 TGACATCTACAAAAAGTTCTTAATTAATGAAATCCGCAAAA
9122558 TGTTATAAAA
Statistics
Matches: 663, Mismatches: 58, Indels: 16
0.90 0.08 0.02
Matches are distributed among these distances:
364 4 0.01
365 247 0.37
366 83 0.13
367 80 0.12
368 189 0.29
369 60 0.09
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.31
Consensus pattern (365 bp):
TGTATTTATGCATGTTTTGCTTTGGACTTTTATTATCTCTTGTTCGTACAGAATACACAAATTCC
AACTGTAACAACCTGCATTATTGTTGGAACTAAAAAAAGATATATAAATTTAAGGAAGAAAAAAT
GATTATCGACAAATGGCACCACCTCTTACCAAAGAGGTTTCAATAATAGCGTAACGCCCAACTAG
AATCACGTAAGTTTTTATTTCCAACGTAAGAATATCTCACGTGCTTTGTGTGCAGAGACTATGAG
AACAAATAAAGGACATCTTACTAGATTCACCAAACTCCATTGGTGTTGCATTAGTGACTGATGAC
ATCTACAAAAAGTTCTTAATTAATGAAATCCGCAAAAGGT
Found at i:9128024 original size:18 final size:18
Alignment explanation
Indices: 9128001--9128036 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
9127991 TATATTGCAT
9128001 GCAACTATGTATTAGGAA
1 GCAACTATGTATTAGGAA
*
9128019 GCAACTATGTTTTAGGAA
1 GCAACTATGTATTAGGAA
9128037 ACTACTAAGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.11, G:0.22, T:0.31
Consensus pattern (18 bp):
GCAACTATGTATTAGGAA
Found at i:9128043 original size:18 final size:18
Alignment explanation
Indices: 9128002--9128043 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
9127992 ATATTGCATG
*
9128002 CAACTATGTATTAGGAAG
1 CAACTATGTATTAGGAAA
*
9128020 CAACTATGTTTTAGGAAA
1 CAACTATGTATTAGGAAA
*
9128038 CTACTA
1 CAACTA
9128044 AGTTCAGGCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.14, G:0.17, T:0.31
Consensus pattern (18 bp):
CAACTATGTATTAGGAAA
Found at i:9128957 original size:47 final size:47
Alignment explanation
Indices: 9128888--9129007 Score: 170
Period size: 47 Copynumber: 2.6 Consensus size: 47
9128878 ATATTCTAAG
* *
9128888 AAAACCTTAAAATGTTTCAAGACAAACAAAGAGATAGTAAATTATTA
1 AAAACCTCAAAATGTTTCAAGACAAACAAAGAGATAATAAATTATTA
* * *
9128935 AAAACCTCAAAATGTTTCAAGACAGATAAAGAGATAATAAATTATTT
1 AAAACCTCAAAATGTTTCAAGACAAACAAAGAGATAATAAATTATTA
* *
9128982 AAAACCTGAAAATATTTCAAGA-AAAC
1 AAAACCTCAAAATGTTTCAAGACAAAC
9129008 CTTAAAATGT
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
46 2 0.03
47 62 0.97
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (47 bp):
AAAACCTCAAAATGTTTCAAGACAAACAAAGAGATAATAAATTATTA
Found at i:9128966 original size:115 final size:116
Alignment explanation
Indices: 9128810--9129241 Score: 505
Period size: 115 Copynumber: 3.7 Consensus size: 116
9128800 AACTTTAAAA
* * * * *
9128810 TAAATTATTAAAAACCTCATATTATTCCAAAACA-ACCAAAGAGATAATAAATTATTAAAAACCT
1 TAAATTATTAAAAACCTCAAAATGTTTCAAGACAGACCAAAGAGATAATAAATTATTAAAAACCT
*
9128874 CACAATA-TTCTAAGAAAACCTTAAAATGTTTCAAGACAAACAAAGAGATAG
66 CAAAATATTTC-AAGAAAACCTTAAAATGTTTCAAGACAAACAAAGAGATAG
* *
9128925 TAAATTATTAAAAACCTCAAAATGTTTCAAGACAGA-TAAAGAGATAATAAATTATTTAAAACCT
1 TAAATTATTAAAAACCTCAAAATGTTTCAAGACAGACCAAAGAGATAATAAATTATTAAAAACCT
* * *
9128989 GAAAATATTTCAAGAAAACCTTAAAATGTTTCAAGACAGACAAAGATATAG
66 CAAAATATTTCAAGAAAACCTTAAAATGTTTCAAGACAAACAAAGAGATAG
* * * *
9129040 TAAATTATTTAAAACCTCAAAATGTTTCAAGAGAGA-CAAAGACATAGTAAATTATTAAAAAAAA
1 TAAATTATTAAAAACCTCAAAATGTTTCAAGACAGACCAAAGAGATAATAAATTATT----AAAA
* *
9129104 ACCCTCAAAATATTTCAAGAAAACCTTAAAATGTTTCGAA-CCTAACAAAGAGATAG
62 A-CCTCAAAATATTTCAAGAAAACCTTAAAATGTTTC-AAGACAAACAAAGAGATAG
* * * * * * *
9129160 TAAATTATTTAAAATCTTAAAATGTTTCAAGACAAACAAATTAGAGAGAGTAAATTATTAAAAAC
1 TAAATTATTAAAAACCTCAAAATGTTTCAAGACAGACCAA--AGAGATAATAAATTATTAAAAAC
* * *
9129225 CTTAAAATGTCTCAAGA
64 CTCAAAATATTTCAAGA
9129242 CAATCAAAGA
Statistics
Matches: 274, Mismatches: 32, Indels: 19
0.84 0.10 0.06
Matches are distributed among these distances:
115 149 0.54
116 4 0.01
118 15 0.05
119 9 0.03
120 78 0.28
121 4 0.01
123 15 0.05
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.27
Consensus pattern (116 bp):
TAAATTATTAAAAACCTCAAAATGTTTCAAGACAGACCAAAGAGATAATAAATTATTAAAAACCT
CAAAATATTTCAAGAAAACCTTAAAATGTTTCAAGACAAACAAAGAGATAG
Found at i:9129006 original size:21 final size:21
Alignment explanation
Indices: 9128982--9129024 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
9128972 TAAATTATTT
9128982 AAAACCTGAAAATATTTCAAG
1 AAAACCTGAAAATATTTCAAG
* *
9129003 AAAACCTTAAAATGTTTCAAG
1 AAAACCTGAAAATATTTCAAG
9129024 A
1 A
9129025 CAGACAAAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.51, C:0.14, G:0.09, T:0.26
Consensus pattern (21 bp):
AAAACCTGAAAATATTTCAAG
Found at i:9129007 original size:68 final size:68
Alignment explanation
Indices: 9128935--9129071 Score: 220
Period size: 68 Copynumber: 2.0 Consensus size: 68
9128925 TAAATTATTA
* *
9128935 AAAACCTCAAAATGTTTCAAGACAGATAAAGAGATAATAAATTATTTAAAACCTGAAAATATTTC
1 AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATTATTTAAAACCTCAAAATATTTC
9129000 AAG
66 AAG
* * * *
9129003 AAAACCTTAAAATGTTTCAAGACAGACAAAGATATAGTAAATTATTTAAAACCTCAAAATGTTTC
1 AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATTATTTAAAACCTCAAAATATTTC
9129068 AAG
66 AAG
9129071 A
1 A
9129072 GAGACAAAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
68 63 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.27
Consensus pattern (68 bp):
AAAACCTCAAAATGTTTCAAGACAGACAAAGAGATAATAAATTATTTAAAACCTCAAAATATTTC
AAG
Found at i:9129067 original size:47 final size:47
Alignment explanation
Indices: 9129003--9129100 Score: 160
Period size: 47 Copynumber: 2.1 Consensus size: 47
9128993 ATATTTCAAG
* * *
9129003 AAAACCTTAAAATGTTTCAAGACAGACAAAGATATAGTAAATTATTT
1 AAAACCTCAAAATGTTTCAAGACAGACAAAGACATAGTAAATTATTA
*
9129050 AAAACCTCAAAATGTTTCAAGAGAGACAAAGACATAGTAAATTATTA
1 AAAACCTCAAAATGTTTCAAGACAGACAAAGACATAGTAAATTATTA
9129097 AAAA
1 AAAA
9129101 AAAACCCTCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.26
Consensus pattern (47 bp):
AAAACCTCAAAATGTTTCAAGACAGACAAAGACATAGTAAATTATTA
Found at i:9129229 original size:50 final size:49
Alignment explanation
Indices: 9129123--9129317 Score: 186
Period size: 50 Copynumber: 4.0 Consensus size: 49
9129113 ATATTTCAAG
* * *
9129123 AAAACCTTAAAATGTTTCGAA-CCTAAC-AA-AGAGATAGTAAATTATTT
1 AAAACCTTAAAATGTTTC-AAGACAAACAAATAGAGATAGTAAATTATTA
* *
9129170 AAAATCTTAAAATGTTTCAAGACAAACAAATTAGAGAGAGTAAATTATTA
1 AAAACCTTAAAATGTTTCAAGACAAACAAA-TAGAGATAGTAAATTATTA
* *
9129220 AAAACCTTAAAATGTCTCAAGACAATCAAAGAGATAGAGATAGTAAATTATTA
1 AAAACCTTAAAATGTTTCAAGACAA--ACA-A-ATAGAGATAGTAAATTATTA
* * * * *
9129273 AAAATCTTAGAATGTTTTAAGAC-AA-TAA-AGAGATAATAAATTATT
1 AAAACCTTAAAATGTTTCAAGACAAACAAATAGAGATAGTAAATTATT
9129318 CTTCAATAAC
Statistics
Matches: 125, Mismatches: 15, Indels: 17
0.80 0.10 0.11
Matches are distributed among these distances:
46 18 0.14
47 22 0.18
48 3 0.02
50 40 0.32
52 3 0.02
53 38 0.30
54 1 0.01
ACGTcount: A:0.50, C:0.09, G:0.12, T:0.29
Consensus pattern (49 bp):
AAAACCTTAAAATGTTTCAAGACAAACAAATAGAGATAGTAAATTATTA
Found at i:9129273 original size:53 final size:53
Alignment explanation
Indices: 9129152--9129307 Score: 212
Period size: 50 Copynumber: 3.0 Consensus size: 53
9129142 AACCTAACAA
* * *
9129152 AGAGATAGTAAATTATTTAAAATCTTAAAATGTTTCAAGACAAAC-AA-A-TT
1 AGAGATAGTAAATTATTAAAAATCTTAAAATGTTTCAAGACAATCAAAGAGAT
* * *
9129202 AGAGAGAGTAAATTATTAAAAACCTTAAAATGTCTCAAGACAATCAAAGAGAT
1 AGAGATAGTAAATTATTAAAAATCTTAAAATGTTTCAAGACAATCAAAGAGAT
* *
9129255 AGAGATAGTAAATTATTAAAAATCTTAGAATGTTTTAAGACAAT-AAAGAGAT
1 AGAGATAGTAAATTATTAAAAATCTTAAAATGTTTCAAGACAATCAAAGAGAT
9129307 A
1 A
9129308 ATAAATTATT
Statistics
Matches: 92, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
50 40 0.43
51 2 0.02
52 10 0.11
53 40 0.43
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (53 bp):
AGAGATAGTAAATTATTAAAAATCTTAAAATGTTTCAAGACAATCAAAGAGAT
Found at i:9129865 original size:9 final size:9
Alignment explanation
Indices: 9129829--9129897 Score: 52
Period size: 9 Copynumber: 7.4 Consensus size: 9
9129819 TTTTAATAGA
9129829 ATAATTTTT
1 ATAATTTTT
*
9129838 ATTACTTTTTT
1 A-TA-ATTTTT
*
9129849 AAATATTTTT
1 ATA-ATTTTT
9129859 ATAATTTTT
1 ATAATTTTT
9129868 GA-AATTTTT
1 -ATAATTTTT
*
9129877 AT-TTTTTT
1 ATAATTTTT
*
9129885 ATAAATTTT
1 ATAATTTTT
9129894 ATAA
1 ATAA
9129898 AATTATAAAA
Statistics
Matches: 47, Mismatches: 8, Indels: 10
0.72 0.12 0.15
Matches are distributed among these distances:
8 8 0.17
9 22 0.47
10 11 0.23
11 6 0.13
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (9 bp):
ATAATTTTT
Found at i:9129866 original size:20 final size:21
Alignment explanation
Indices: 9129832--9129876 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
9129822 TAATAGAATA
* *
9129832 ATTTTTATTACTTTTTTAAAT
1 ATTTTTATTAATTTTTGAAAT
9129853 ATTTTTA-TAATTTTTGAAAT
1 ATTTTTATTAATTTTTGAAAT
9129873 -TTTT
1 ATTTT
9129877 ATTTTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 4 0.18
20 11 0.50
21 7 0.32
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTTTTATTAATTTTTGAAAT
Found at i:9129965 original size:17 final size:17
Alignment explanation
Indices: 9129924--9129966 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
9129914 TTTTTATTAA
*
9129924 ATAATTTCTAGTATTTTT
1 ATAATTT-TAGTATATTT
* *
9129942 ATTATTTTATTATATTT
1 ATAATTTTAGTATATTT
9129959 ATAATTTT
1 ATAATTTT
9129967 TTTTAAAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 15 0.71
18 6 0.29
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (17 bp):
ATAATTTTAGTATATTT
Found at i:9141198 original size:131 final size:131
Alignment explanation
Indices: 9140964--9141229 Score: 523
Period size: 131 Copynumber: 2.0 Consensus size: 131
9140954 ATTATACAAC
9140964 TATAATTAAATAAAGCCCATCCTTTTAAGAGATTTTCAATATCCTTAAGTCATATTCTGCTGTAT
1 TATAATTAAATAAAGCCCATCCTTTTAAGAGATTTTCAATATCCTTAAGTCATATTCTGCTGTAT
9141029 GATATAAGCAAACCTTTGCAGGTTATGCTTATAATGGTTGATTGGGCATATTGGAAACTAATGTA
66 GATATAAGCAAACCTTTGCAGGTTATGCTTATAATGGTTGATTGGGCATATTGGAAACTAATGTA
9141094 A
131 A
*
9141095 TATAATTAAATAAAGTCCATCCTTTTAAGAGATTTTCAATATCCTTAAGTCATATTCTGCTGTAT
1 TATAATTAAATAAAGCCCATCCTTTTAAGAGATTTTCAATATCCTTAAGTCATATTCTGCTGTAT
9141160 GATATAAGCAAACCTTTGCAGGTTATGCTTATAATGGTTGATTGGGCATATTGGAAACTAATGTA
66 GATATAAGCAAACCTTTGCAGGTTATGCTTATAATGGTTGATTGGGCATATTGGAAACTAATGTA
9141225 A
131 A
9141226 TATA
1 TATA
9141230 CCTCTTTCTT
Statistics
Matches: 134, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
131 134 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (131 bp):
TATAATTAAATAAAGCCCATCCTTTTAAGAGATTTTCAATATCCTTAAGTCATATTCTGCTGTAT
GATATAAGCAAACCTTTGCAGGTTATGCTTATAATGGTTGATTGGGCATATTGGAAACTAATGTA
A
Found at i:9142205 original size:23 final size:23
Alignment explanation
Indices: 9142175--9142220 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
9142165 CAAGCTTGAG
9142175 TACAAAATGTAGACCTAACAAAA
1 TACAAAATGTAGACCTAACAAAA
9142198 TACAAAATGTAGACCTAACAAAA
1 TACAAAATGTAGACCTAACAAAA
9142221 CTTGAACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.57, C:0.17, G:0.09, T:0.17
Consensus pattern (23 bp):
TACAAAATGTAGACCTAACAAAA
Found at i:9157944 original size:34 final size:34
Alignment explanation
Indices: 9157906--9157975 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
9157896 ATATTAACGG
9157906 TTGGATTTGAATTTTAAATTTTGAAAAAGAGGAA
1 TTGGATTTGAATTTTAAATTTTGAAAAAGAGGAA
*
9157940 TTGGATTTGAATTTTTAATTTTGAAAAAGAGGAA
1 TTGGATTTGAATTTTAAATTTTGAAAAAGAGGAA
9157974 TT
1 TT
9157976 AAATTTTAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.39, C:0.00, G:0.20, T:0.41
Consensus pattern (34 bp):
TTGGATTTGAATTTTAAATTTTGAAAAAGAGGAA
Found at i:9157980 original size:28 final size:30
Alignment explanation
Indices: 9157915--9157995 Score: 94
Period size: 34 Copynumber: 2.6 Consensus size: 30
9157905 GTTGGATTTG
9157915 AATTTTAAATTTTGAAAAAGAGGAATTGGATTT
1 AATTTTAAATTTTGAAAAAGAGGAATT-GA--T
*
9157948 GAATTTTTAATTTTGAAAAAGAGGAATT-A-
1 -AATTTTAAATTTTGAAAAAGAGGAATTGAT
9157977 AATTTTAAATTTTTGAAAA
1 AATTTTAAA-TTTTGAAAA
9157996 TACAAGCATT
Statistics
Matches: 44, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
28 8 0.18
29 9 0.20
32 1 0.02
34 26 0.59
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (30 bp):
AATTTTAAATTTTGAAAAAGAGGAATTGAT
Found at i:9168696 original size:13 final size:13
Alignment explanation
Indices: 9168678--9168703 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9168668 ATTATATGAA
9168678 ATTAATATTACTT
1 ATTAATATTACTT
9168691 ATTAATATTACTT
1 ATTAATATTACTT
9168704 TTTACTTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTAATATTACTT
Found at i:9179935 original size:20 final size:20
Alignment explanation
Indices: 9179910--9179959 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
9179900 TGGCTTAAAA
9179910 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
9179930 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
9179947 GTGGTAGTGGATT
1 TTGGTAGTGGATT
9179960 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:9184574 original size:20 final size:20
Alignment explanation
Indices: 9184549--9184598 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
9184539 TGGCTTAAAA
9184549 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
9184569 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
9184586 GTGGTAGTGGATT
1 TTGGTAGTGGATT
9184599 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:9197601 original size:16 final size:15
Alignment explanation
Indices: 9197568--9197612 Score: 56
Period size: 14 Copynumber: 2.9 Consensus size: 15
9197558 TATCATTACT
*
9197568 AATTTAAAATTTTATA
1 AATTTAAAAATTT-TA
9197584 AATTATAAAAATTTTA
1 AATT-TAAAAATTTTA
9197600 AA-TTAAAAATTTT
1 AATTTAAAAATTTT
9197613 CTATTTTAGG
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
14 10 0.37
15 1 0.04
16 8 0.30
17 8 0.30
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
AATTTAAAAATTTTA
Found at i:9359274 original size:16 final size:16
Alignment explanation
Indices: 9359241--9359274 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9359231 TAGTAATACT
*
9359241 AATAATTTGACTAAAA
1 AATAATTTGACCAAAA
9359257 AATAATTTGACCAGAAA
1 AATAATTTGACCA-AAA
9359274 A
1 A
9359275 GGGAAAACAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.56, C:0.09, G:0.09, T:0.26
Consensus pattern (16 bp):
AATAATTTGACCAAAA
Found at i:9361795 original size:45 final size:44
Alignment explanation
Indices: 9361743--9361834 Score: 139
Period size: 45 Copynumber: 2.1 Consensus size: 44
9361733 ACCAACAAGC
*
9361743 AAATAATAATATAATAAAAAGGAAAAGGACAAAAAAGGTAAAGAG
1 AAATAATAATATAATAAAAAGGAAAAAGA-AAAAAAGGTAAAGAG
* * *
9361788 AAATAATAATATAATAAGAAGGAAAAAGATAAAAATGTAAAGAG
1 AAATAATAATATAATAAAAAGGAAAAAGAAAAAAAGGTAAAGAG
9361832 AAA
1 AAA
9361835 AAAGTGGAGG
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 16 0.37
45 27 0.63
ACGTcount: A:0.67, C:0.01, G:0.16, T:0.15
Consensus pattern (44 bp):
AAATAATAATATAATAAAAAGGAAAAAGAAAAAAAGGTAAAGAG
Found at i:9362190 original size:27 final size:27
Alignment explanation
Indices: 9362130--9362190 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 27
9362120 ATAATAAATA
*
9362130 TTTTTATTTTTAAAATACTTTTTTTACT
1 TTTTTATTTTTAAAATAC-TTTTTTAAT
9362158 TTTTTATTTTTAAAATAC-TTTTTAAT
1 TTTTTATTTTTAAAATACTTTTTTAAT
9362184 TTGTTTA
1 TT-TTTA
9362191 AAAAAATTGT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
26 9 0.29
27 4 0.13
28 18 0.58
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (27 bp):
TTTTTATTTTTAAAATACTTTTTTAAT
Found at i:9363090 original size:17 final size:15
Alignment explanation
Indices: 9363058--9363091 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
9363048 AATGAATTTT
9363058 TAAAAATAAAAAATA
1 TAAAAATAAAAAATA
9363073 TAAAAACTAAACAAATA
1 TAAAAA-TAAA-AAATA
9363090 TA
1 TA
9363092 CTAATAGTAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.35
16 4 0.24
17 7 0.41
ACGTcount: A:0.74, C:0.06, G:0.00, T:0.21
Consensus pattern (15 bp):
TAAAAATAAAAAATA
Found at i:9369339 original size:79 final size:80
Alignment explanation
Indices: 9369239--9369391 Score: 218
Period size: 79 Copynumber: 1.9 Consensus size: 80
9369229 CCAATATTGA
* * * *
9369239 CCATAAATTCCCTCTAGTAGTGGTTCTATTGTTGATATTGAGTTATTCTAGAATATCTTTTTGCC
1 CCATAAATCCCCTCTAGTAGTGGTTCTATAGTTGATATCGAGTTATTCTAGAACATCTTTTTGCC
9369304 AAATATACTTATTCC
66 AAATATACTTATTCC
* * * *
9369319 CCAT-AATCCCCTCTATTAGTGGTTCTGTAGTTGATATCGAGTTATTGTAGAACATCTTTTTGGC
1 CCATAAATCCCCTCTAGTAGTGGTTCTATAGTTGATATCGAGTTATTCTAGAACATCTTTTTGCC
*
9369383 AAATTTACT
66 AAATATACT
9369392 CTCAGATATA
Statistics
Matches: 64, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
79 60 0.94
80 4 0.06
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.42
Consensus pattern (80 bp):
CCATAAATCCCCTCTAGTAGTGGTTCTATAGTTGATATCGAGTTATTCTAGAACATCTTTTTGCC
AAATATACTTATTCC
Found at i:9373389 original size:14 final size:15
Alignment explanation
Indices: 9373370--9373402 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
9373360 AGATCAAAGC
*
9373370 TAAAAATT-TTATAT
1 TAAAAATTCTTAAAT
9373384 TAAAAATTCTTAAAT
1 TAAAAATTCTTAAAT
9373399 TAAA
1 TAAA
9373403 TTATCAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
TAAAAATTCTTAAAT
Found at i:9373608 original size:22 final size:22
Alignment explanation
Indices: 9373583--9373624 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
9373573 GAAACTAAAC
9373583 TTAACAAAGAATTTTAACAATA
1 TTAACAAAGAATTTTAACAATA
* **
9373605 TTAATAAATTATTTTAACAA
1 TTAACAAAGAATTTTAACAA
9373625 CATATAAAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.52, C:0.07, G:0.02, T:0.38
Consensus pattern (22 bp):
TTAACAAAGAATTTTAACAATA
Found at i:9375287 original size:125 final size:125
Alignment explanation
Indices: 9375004--9375309 Score: 434
Period size: 126 Copynumber: 2.4 Consensus size: 125
9374994 GATAAAATCA
* * * **
9375004 AAGCAGGATGCTTTATCAGAAGAATTTCTGAAGTCGCGCCCACGTGTACGTGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAGT
*
9375069 AGGTCCTGCAAAAATAATTTCAAGTTGACATTTCTGAGCAAATAGTATAAAAAAACGCTTC
66 AGGTCCTGAAAAAATAATTTCAAGTTGACATTTCTGAGCAAATAGTAT-AAAAAACGCTTC
* * *
9375130 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCTCCCTCGTGGACACGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAGT
* * * *
9375195 ATGTCCTGGAAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTAT-AAAAATGCTTC
66 AGGTCCT-GAAAAAATAATTTCAAGTTGACATTTCTGAGCAAATAGTATAAAAAACGCTTC
** * *
9375255 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCATGCCCATGTGGACGCGCTT
1 AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTT
9375310 ATCAAGACGA
Statistics
Matches: 159, Mismatches: 20, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
125 58 0.36
126 63 0.40
127 38 0.24
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (125 bp):
AAGCAGGATGCTTTATCAGAAGAATTTGTGAAATCGCGCCCACGTGGACACGCTTTTGCTACAGT
AGGTCCTGAAAAAATAATTTCAAGTTGACATTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:9384895 original size:4 final size:4
Alignment explanation
Indices: 9384888--9384961 Score: 148
Period size: 4 Copynumber: 18.5 Consensus size: 4
9384878 TATCTATCTA
9384888 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
9384936 TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TA
9384962 CCTTGGATAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 70 1.00
ACGTcount: A:0.26, C:0.00, G:0.24, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:9388673 original size:20 final size:21
Alignment explanation
Indices: 9388648--9388691 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
9388638 AACTTATAAA
*
9388648 TAAATACTAA-TAAA-ATTATT
1 TAAATA-TAAGTAAATATTACT
9388668 TAAATATAAGTAAATATTACT
1 TAAATATAAGTAAATATTACT
9388689 TAA
1 TAA
9388692 TTAGAACTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 10 0.48
21 8 0.38
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (21 bp):
TAAATATAAGTAAATATTACT
Found at i:9389261 original size:3 final size:3
Alignment explanation
Indices: 9389253--9389291 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
9389243 TAAGGAGCCC
9389253 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9389292 ATACACTCGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9400361 original size:29 final size:31
Alignment explanation
Indices: 9400296--9400373 Score: 90
Period size: 32 Copynumber: 2.5 Consensus size: 31
9400286 ATTATTAGCT
9400296 TTTAAGTACTAAAATGGATAAAGAAAAAAAAG
1 TTTAAGTACTAAAAT-GATAAAGAAAAAAAAG
* *
9400328 TTTAAGTACTAAAAT-ATGATA-AAAAATAA-
1 TTTAAGTACTAAAATGAT-AAAGAAAAAAAAG
*
9400357 TTTAAGTACTCAAATGA
1 TTTAAGTACTAAAATGA
9400374 GAAAATAGGT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
29 14 0.34
30 10 0.24
31 2 0.05
32 15 0.37
ACGTcount: A:0.55, C:0.05, G:0.12, T:0.28
Consensus pattern (31 bp):
TTTAAGTACTAAAATGATAAAGAAAAAAAAG
Found at i:9400373 original size:27 final size:29
Alignment explanation
Indices: 9400296--9400378 Score: 82
Period size: 29 Copynumber: 2.8 Consensus size: 29
9400286 ATTATTAGCT
*
9400296 TTTAAGTACTAAAATGGATAAAGAAAAAAAAG
1 TTTAAGTACTAAAAT--AT-GAGAAAAAAAAG
*
9400328 TTTAAGTACTAAAATATGATAAAAAATAA-
1 TTTAAGTACTAAAATATGAGAAAAAA-AAG
*
9400357 TTTAAGTACT-CAA-ATGAGAAAA
1 TTTAAGTACTAAAATATGAGAAAA
9400379 TAGGTGTAGT
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
27 8 0.17
28 2 0.04
29 17 0.37
30 4 0.09
32 15 0.33
ACGTcount: A:0.57, C:0.05, G:0.12, T:0.27
Consensus pattern (29 bp):
TTTAAGTACTAAAATATGAGAAAAAAAAG
Found at i:9406528 original size:23 final size:23
Alignment explanation
Indices: 9406502--9406547 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
9406492 ATGAGAATTT
* * *
9406502 TTAAATATTTTAAAGTAACTTAA
1 TTAAAAATTTTAAAATAAATTAA
9406525 TTAAAAATTTTAAAATAAATTAA
1 TTAAAAATTTTAAAATAAATTAA
9406548 AAAAGTATAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.41
Consensus pattern (23 bp):
TTAAAAATTTTAAAATAAATTAA
Found at i:9406928 original size:30 final size:27
Alignment explanation
Indices: 9406888--9406944 Score: 69
Period size: 30 Copynumber: 2.0 Consensus size: 27
9406878 TTTTGAAAAT
9406888 GAGAAGATTAAATTATTCTAATATTTGGA
1 GAGAAGATTAAATTATTC-AA-ATTTGGA
* *
9406917 GAGAAGGATTAATTTGTTCAAATTTGGA
1 GAGAA-GATTAAATTATTCAAATTTGGA
9406945 AATGAGAGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 7 0.28
29 7 0.28
30 11 0.44
ACGTcount: A:0.39, C:0.04, G:0.21, T:0.37
Consensus pattern (27 bp):
GAGAAGATTAAATTATTCAAATTTGGA
Found at i:9412107 original size:22 final size:22
Alignment explanation
Indices: 9412081--9412137 Score: 105
Period size: 22 Copynumber: 2.6 Consensus size: 22
9412071 TCATATTAAT
*
9412081 AAGGTTAAGGTTTTAAGATTTC
1 AAGGTTAATGTTTTAAGATTTC
9412103 AAGGTTAATGTTTTAAGATTTC
1 AAGGTTAATGTTTTAAGATTTC
9412125 AAGGTTAATGTTT
1 AAGGTTAATGTTT
9412138 CAAATTTTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 34 1.00
ACGTcount: A:0.32, C:0.04, G:0.21, T:0.44
Consensus pattern (22 bp):
AAGGTTAATGTTTTAAGATTTC
Found at i:9413136 original size:32 final size:32
Alignment explanation
Indices: 9413093--9413155 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
9413083 CTAAATAGTA
* *
9413093 TGTGATGAAATACGTTTTATGGATTGCTTGTC
1 TGTGATAAAATAAGTTTTATGGATTGCTTGTC
*
9413125 TGTGATAAAATAAGTTTTATGGGTTGCTTGT
1 TGTGATAAAATAAGTTTTATGGATTGCTTGT
9413156 TATGTTCTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.24, C:0.06, G:0.25, T:0.44
Consensus pattern (32 bp):
TGTGATAAAATAAGTTTTATGGATTGCTTGTC
Found at i:9413235 original size:96 final size:97
Alignment explanation
Indices: 9413065--9413257 Score: 361
Period size: 96 Copynumber: 2.0 Consensus size: 97
9413055 GGTGGATTGC
9413065 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTGTGA
1 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTGTGA
9413130 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
66 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
*
9413162 CTGCTTACATCTCTTAAGCT-AATAGTATGTGATGGAATACGTTTTATGGATTGCTTGTCTGTGA
1 CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTGTGA
*
9413226 TAAAGTAAGTTTTATGGGTTGCTTGTTATGTT
66 TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
9413258 TTGTTTATGG
Statistics
Matches: 94, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
96 74 0.79
97 20 0.21
ACGTcount: A:0.24, C:0.10, G:0.22, T:0.44
Consensus pattern (97 bp):
CTGCTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTGTGA
TAAAATAAGTTTTATGGGTTGCTTGTTATGTT
Found at i:9419125 original size:5 final size:5
Alignment explanation
Indices: 9419117--9419148 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
9419107 TTTAATGTAA
9419117 AATAT AATAT AATAT AATAT AATAT AATAT AA
1 AATAT AATAT AATAT AATAT AATAT AATAT AA
9419149 ATATTTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
AATAT
Found at i:9421617 original size:6 final size:6
Alignment explanation
Indices: 9421606--9421643 Score: 51
Period size: 6 Copynumber: 6.3 Consensus size: 6
9421596 ATAATAAAAG
*
9421606 AAGAAA AAGAAA AATAAA AAGAAA AA-AAA CAAGAAA AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA -AAGAAA AA
9421644 AATCAGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
5 3 0.11
6 22 0.79
7 3 0.11
ACGTcount: A:0.84, C:0.03, G:0.11, T:0.03
Consensus pattern (6 bp):
AAGAAA
Found at i:9421645 original size:21 final size:21
Alignment explanation
Indices: 9421601--9421645 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
9421591 CTGTGATAAT
* *
9421601 AAAAGAAGAAAAAGAAAAATA
1 AAAAGAAAAAAAACAAAAATA
*
9421622 AAAAGAAAAAAAACAAGAA-A
1 AAAAGAAAAAAAACAAAAATA
9421642 AAAA
1 AAAA
9421646 TCAGAAATAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.84, C:0.02, G:0.11, T:0.02
Consensus pattern (21 bp):
AAAAGAAAAAAAACAAAAATA
Found at i:9425119 original size:22 final size:22
Alignment explanation
Indices: 9425094--9425150 Score: 87
Period size: 22 Copynumber: 2.6 Consensus size: 22
9425084 TCATATTAAT
*
9425094 AAGGTTAAGGTTTGAAGATTTC
1 AAGGTTAATGTTTGAAGATTTC
* *
9425116 AAGGGTAATGTTTTAAGATTTC
1 AAGGTTAATGTTTGAAGATTTC
9425138 AAGGTTAATGTTT
1 AAGGTTAATGTTT
9425151 CAATTTTTGT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.32, C:0.04, G:0.25, T:0.40
Consensus pattern (22 bp):
AAGGTTAATGTTTGAAGATTTC
Found at i:9426130 original size:32 final size:32
Alignment explanation
Indices: 9426087--9426149 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 32
9426077 CTAAATAGTA
* *
9426087 TGTGATGAAATACGTTTTATGGATTGCTTGTC
1 TGTGATAAAATAAGTTTTATGGATTGCTTGTC
*
9426119 TGTGATAAAATAAGTTTTATGGGTTGCTTGT
1 TGTGATAAAATAAGTTTTATGGATTGCTTGT
9426150 TATGTTCTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.24, C:0.06, G:0.25, T:0.44
Consensus pattern (32 bp):
TGTGATAAAATAAGTTTTATGGATTGCTTGTC
Found at i:9426229 original size:96 final size:97
Alignment explanation
Indices: 9426062--9426251 Score: 346
Period size: 96 Copynumber: 2.0 Consensus size: 97
9426052 GGATTGCCAT
*
9426062 CTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTGTGATAA
1 CTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTATGATAA
9426127 AATAAGTTTTATGGGTTGCTTGTTATGTTCTG
66 AATAAGTTTTATGGGTTGCTTGTTATGTTCTG
*
9426159 CTTACATCTCTTAAGGT-AATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTATGATAA
1 CTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTATGATAA
*
9426223 AGTAAGTTTTATGGGTTGCTTGTTATGTT
66 AATAAGTTTTATGGGTTGCTTGTTATGTT
9426252 TTGTTTATGG
Statistics
Matches: 90, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
96 74 0.82
97 16 0.18
ACGTcount: A:0.26, C:0.09, G:0.21, T:0.44
Consensus pattern (97 bp):
CTTACATCTCTTAAGCTAAATAGTATGTGATGAAATACGTTTTATGGATTGCTTGTCTATGATAA
AATAAGTTTTATGGGTTGCTTGTTATGTTCTG
Found at i:9445290 original size:11 final size:11
Alignment explanation
Indices: 9445263--9445302 Score: 59
Period size: 11 Copynumber: 3.9 Consensus size: 11
9445253 ACCCAAAATT
9445263 TATTTT-AAAA
1 TATTTTAAAAA
9445273 -A-TTTAAAAA
1 TATTTTAAAAA
9445282 TATTTTAAAAA
1 TATTTTAAAAA
9445293 TATTTTAAAA
1 TATTTTAAAA
9445303 TTAAAAAAAG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
8 3 0.11
9 5 0.19
10 1 0.04
11 18 0.67
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:9445337 original size:21 final size:22
Alignment explanation
Indices: 9445308--9445349 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
9445298 TAAAATTAAA
*
9445308 AAAAGTTAAAAAAAAGTATTTT
1 AAAAGTTAAAAAAAAATATTTT
9445330 AAAA-TTAAAAAAAAATATTT
1 AAAAGTTAAAAAAAAATATTT
9445350 ATTATATTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31
Consensus pattern (22 bp):
AAAAGTTAAAAAAAAATATTTT
Found at i:9445984 original size:17 final size:16
Alignment explanation
Indices: 9445951--9445985 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
9445941 TAACTAATTT
9445951 TTAAAAAATTTAAAAA
1 TTAAAAAATTTAAAAA
*
9445967 TTAAAAAATATTATAAA
1 TTAAAAAAT-TTAAAAA
9445984 TT
1 TT
9445986 TTTTAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (16 bp):
TTAAAAAATTTAAAAA
Found at i:9452199 original size:84 final size:84
Alignment explanation
Indices: 9452076--9452786 Score: 879
Period size: 84 Copynumber: 8.5 Consensus size: 84
9452066 TAGTTGCTTC
* * * * ***
9452076 TGCTTTAGCGATCTCAAAATCGGCACATTTTCTTGCTTCAACAGCCTTCTTCTTGGTTTCTTCTG
1 TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
* *
9452141 CAATCTTCCTTTGCGCCTC
66 CAATCTTCCTTTGCTCCTG
* * ** ** *
9452160 CGCTTCAGCCATCTGTAAATCAGCATGTTTTCTTTCTTCAACTGCCTTCTTCTT-AATCTCTTCT
1 TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAAT-TCTTCT
9452224 GCAATCTT-CTTCTGCTCCTG
65 GCAATCTTCCTT-TGCTCCTG
* * * *
9452244 TGCTTTAGCCATCTCCAAAGC--CACATGTTTTCTTTCTTCAACAACCTTCTTCTTCGACTCTTC
1 TGCTTTAGCCATCTCCAAATCAGCACA--TTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTC
*
9452307 TGCAATCTTCCTCTGCTCCTG
64 TGCAATCTTCCTTTGCTCCTG
* **
9452328 TGCTTTAGCCATCTCCAAAGCAGCATGTTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
1 TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
*
9452393 CAGTCTTCCTCTT-CTCCTG
66 CAATCTTCCT-TTGCTCCTG
*
9452412 TGCTTTAGCAATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
1 TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
*
9452477 CAGTCTTCCTCTT-CTCCTG
66 CAATCTTCCT-TTGCTCCTG
*
9452496 TGCTTTAGCAATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
1 TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
*
9452561 CAGTCTTCCTTTGCTCCTG
66 CAATCTTCCTTTGCTCCTG
* *
9452580 TGCTTTAGCAATCTCCAAATCAGCACATTTTCTTTCTTCAACGGCCTTCTTCTTC-ATCTCTTCT
1 TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAAT-TCTTCT
* * *
9452644 GCAACCTTCCTCTCCTCCTG
65 GCAATCTTCCTTTGCTCCTG
* * *
9452664 TGCTTTAGCCATCTCCAGATCAGCACATTTTCTATCTTCAACAG-C-T-TTCTT-AGATTTTTC-
1 TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCA-ATTCTTCT
* * *
9452724 GACAAACTTCCTCTGCTCCTT
65 G-CAATCTTCCTTTGCTCCTG
* *
9452745 TGCTTTAGCCATCTCCGAATCAGCACCTTTTCTTTCTTCAAC
1 TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAAC
9452787 CACCTTCCTT
Statistics
Matches: 559, Mismatches: 54, Indels: 31
0.87 0.08 0.05
Matches are distributed among these distances:
80 1 0.00
81 63 0.11
82 5 0.01
83 9 0.02
84 475 0.85
85 4 0.01
86 2 0.00
ACGTcount: A:0.17, C:0.32, G:0.10, T:0.41
Consensus pattern (84 bp):
TGCTTTAGCCATCTCCAAATCAGCACATTTTCTTTCTTCAACAGCCTTCTTCTTCAATTCTTCTG
CAATCTTCCTTTGCTCCTG
Found at i:9454650 original size:18 final size:18
Alignment explanation
Indices: 9454616--9454653 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 18
9454606 CAAAAAAATC
9454616 ATAAAAATAAACTTTTTTA
1 ATAAAAATAAAC-TTTTTA
9454635 ATAAAAATATAA-TTTTTA
1 ATAAAAATA-AACTTTTTA
9454653 A
1 A
9454654 ACTATTAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.39
19 9 0.50
20 2 0.11
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
ATAAAAATAAACTTTTTA
Found at i:9455201 original size:20 final size:21
Alignment explanation
Indices: 9455172--9455215 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
9455162 TCACATCAAC
9455172 AAATAATTTAAAAAT-TATTA
1 AAATAATTTAAAAATATATTA
* *
9455192 AAATATTTTAAATATATATTA
1 AAATAATTTAAAAATATATTA
9455213 AAA
1 AAA
9455216 GTAGGATGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AAATAATTTAAAAATATATTA
Found at i:9462107 original size:23 final size:22
Alignment explanation
Indices: 9462081--9462173 Score: 68
Period size: 23 Copynumber: 4.3 Consensus size: 22
9462071 GGTTGATGAT
9462081 TTTAGTGTTTTTAAG-GTTTAGGG
1 TTTA-TGTTTTT-AGTGTTTAGGG
*
9462104 TTTATGGTTTTTAGTTTTTAGGG
1 TTTAT-GTTTTTAGTGTTTAGGG
* * *
9462127 TTTATG--TTTAGGGTTTATGA
1 TTTATGTTTTTAGTGTTTAGGG
* * *
9462147 TTT-TATATTTAGTGTTTAGTG
1 TTTATGTTTTTAGTGTTTAGGG
9462168 TTTATG
1 TTTATG
9462174 GTTTAAGGGT
Statistics
Matches: 54, Mismatches: 11, Indels: 11
0.71 0.14 0.14
Matches are distributed among these distances:
19 1 0.02
20 13 0.24
21 13 0.24
22 5 0.09
23 22 0.41
ACGTcount: A:0.17, C:0.00, G:0.25, T:0.58
Consensus pattern (22 bp):
TTTATGTTTTTAGTGTTTAGGG
Found at i:9462112 original size:14 final size:14
Alignment explanation
Indices: 9462090--9462227 Score: 59
Period size: 14 Copynumber: 9.7 Consensus size: 14
9462080 TTTTAGTGTT
* *
9462090 TTTAAGGTTTAGGG
1 TTTAGGGTTTATGG
* * *
9462104 TTTATGGTTTTTAGT
1 TTTAGGGTTTAT-GG
9462119 TTTTAGGGTTTAT-G
1 TT-TAGGGTTTATGG
*
9462133 TTTAGGGTTTATGAT
1 TTTAGGGTTTATG-G
**
9462148 TTTA-TATTTA-GTG
1 TTTAGGGTTTATG-G
*
9462161 TTTAGTGTTTATGG
1 TTTAGGGTTTATGG
*
9462175 TTTAAGGGTTTAT-T
1 TTT-AGGGTTTATGG
* *
9462189 TTTAGGGTTTAAGT
1 TTTAGGGTTTATGG
* *
9462203 TTTAGGTTTTTAGGG
1 TTTAGG-GTTTATGG
*
9462218 TTTATGGTTT
1 TTTAGGGTTT
9462228 TAGAGTTTTT
Statistics
Matches: 94, Mismatches: 21, Indels: 18
0.71 0.16 0.14
Matches are distributed among these distances:
13 23 0.24
14 37 0.39
15 26 0.28
16 8 0.09
ACGTcount: A:0.17, C:0.00, G:0.26, T:0.57
Consensus pattern (14 bp):
TTTAGGGTTTATGG
Found at i:9462138 original size:13 final size:13
Alignment explanation
Indices: 9462120--9462204 Score: 73
Period size: 13 Copynumber: 6.2 Consensus size: 13
9462110 GTTTTTAGTT
9462120 TTTAGGGTTTATG
1 TTTAGGGTTTATG
9462133 TTTAGGGTTTATG
1 TTTAGGGTTTATG
**
9462146 ATTTTA-TATTTAGTG
1 --TTTAGGGTTTA-TG
*
9462161 TTTAGTGTTTATGG
1 TTTAGGGTTTAT-G
*
9462175 TTTAAGGGTTTATT
1 TTT-AGGGTTTATG
*
9462189 TTTAGGGTTTAAG
1 TTTAGGGTTTATG
9462202 TTT
1 TTT
9462205 TAGGTTTTTA
Statistics
Matches: 59, Mismatches: 7, Indels: 12
0.76 0.09 0.15
Matches are distributed among these distances:
13 29 0.49
14 16 0.27
15 14 0.24
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (13 bp):
TTTAGGGTTTATG
Found at i:9462187 original size:35 final size:34
Alignment explanation
Indices: 9462120--9462222 Score: 102
Period size: 35 Copynumber: 3.0 Consensus size: 34
9462110 GTTTTTAGTT
* **
9462120 TTTAGGGTTTA-TGTTTAGGGTTTATGATTTTATA
1 TTTAGGGTTTAGTGTTTA-GGTTTAAGGGTTTATA
* *
9462154 TTTAGTGTTTAGTGTTTATGGTTTAAGGGTTTATT
1 TTTAGGGTTTAGTGTTTA-GGTTTAAGGGTTTATA
*
9462189 TTTAGGGTTTAAGT-TTTAGGTTTTTAGGGTTTAT
1 TTTAGGGTTT-AGTGTTTAGG-TTTAAGGGTTTAT
9462223 GGTTTTAGAG
Statistics
Matches: 58, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
34 12 0.21
35 43 0.74
36 3 0.05
ACGTcount: A:0.18, C:0.00, G:0.25, T:0.56
Consensus pattern (34 bp):
TTTAGGGTTTAGTGTTTAGGTTTAAGGGTTTATA
Found at i:9462206 original size:28 final size:28
Alignment explanation
Indices: 9462089--9462206 Score: 82
Period size: 28 Copynumber: 4.2 Consensus size: 28
9462079 ATTTTAGTGT
* * *
9462089 TTTTAA-GGTTTAGGGTTTATGGTTTTTAG
1 TTTTAAGGGTTTA-TGTTTA-GGGTTTAAG
* *
9462118 TTTTTAGGGTTTATGTTTAGGGTTTATG
1 TTTTAAGGGTTTATGTTTAGGGTTTAAG
* *
9462146 ATTTTATA---TTTAGTGTTTAGTGTTTATG
1 -TTTTA-AGGGTTTA-TGTTTAGGGTTTAAG
* *
9462174 GTTTAAGGGTTTATTTTTAGGGTTTAAG
1 TTTTAAGGGTTTATGTTTAGGGTTTAAG
9462202 TTTTA
1 TTTTA
9462207 GGTTTTTAGG
Statistics
Matches: 70, Mismatches: 12, Indels: 15
0.72 0.12 0.15
Matches are distributed among these distances:
26 1 0.01
27 8 0.11
28 36 0.51
29 18 0.26
30 7 0.10
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.57
Consensus pattern (28 bp):
TTTTAAGGGTTTATGTTTAGGGTTTAAG
Found at i:9462277 original size:22 final size:22
Alignment explanation
Indices: 9462187--9462280 Score: 61
Period size: 22 Copynumber: 4.2 Consensus size: 22
9462177 TAAGGGTTTA
* *
9462187 TTTTTAGGGTTTAAGT-TTTAGG
1 TTTTTAGGGTTT-AGTGTTAATG
*
9462209 TTTTTAGGGTTTATGGTTTTAGA-G
1 TTTTTAGGGTTTA--GTGTTA-ATG
* **
9462233 TTTTT--GGTTTTGTGTTTTGTG
1 TTTTTAGGGTTTAGTG-TTAATG
9462254 TTTTTAGGGTTTAGTGTTAATG
1 TTTTTAGGGTTTAGTGTTAATG
9462276 TTTTT
1 TTTTT
9462281 TTATTTTAGG
Statistics
Matches: 56, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
20 2 0.04
21 9 0.16
22 26 0.46
23 10 0.18
24 8 0.14
25 1 0.02
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.61
Consensus pattern (22 bp):
TTTTTAGGGTTTAGTGTTAATG
Found at i:9462295 original size:13 final size:14
Alignment explanation
Indices: 9462279--9462309 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
9462269 GTTAATGTTT
9462279 TTTTAT-TTTAGGG
1 TTTTATGTTTAGGG
9462292 TTTTATGTTTAGGG
1 TTTTATGTTTAGGG
9462306 TTTT
1 TTTT
9462310 TTATTTATGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.13, C:0.00, G:0.23, T:0.65
Consensus pattern (14 bp):
TTTTATGTTTAGGG
Found at i:9462309 original size:29 final size:29
Alignment explanation
Indices: 9462255--9462315 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 29
9462245 TGTTTTGTGT
* *
9462255 TTTTAGGGTTTAGTGTTAATGTTTTTTTA
1 TTTTAGGGTTTAGTGTTAAGGGTTTTTTA
*
9462284 TTTTAGGGTTTTA-TGTTTAGGGTTTTTTA
1 TTTTAGGG-TTTAGTGTTAAGGGTTTTTTA
9462313 TTT
1 TTT
9462316 ATGTTTAGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 24 0.86
30 4 0.14
ACGTcount: A:0.15, C:0.00, G:0.21, T:0.64
Consensus pattern (29 bp):
TTTTAGGGTTTAGTGTTAAGGGTTTTTTA
Found at i:9462316 original size:14 final size:14
Alignment explanation
Indices: 9462277--9462316 Score: 53
Period size: 14 Copynumber: 2.8 Consensus size: 14
9462267 GTGTTAATGT
9462277 TTTTTTATTTTAGGG
1 TTTTTTA-TTTAGGG
* *
9462292 TTTTATGTTTAGGG
1 TTTTTTATTTAGGG
9462306 TTTTTTATTTA
1 TTTTTTATTTA
9462317 TGTTTAGGGT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 16 0.76
15 5 0.24
ACGTcount: A:0.15, C:0.00, G:0.17, T:0.68
Consensus pattern (14 bp):
TTTTTTATTTAGGG
Found at i:9462334 original size:20 final size:20
Alignment explanation
Indices: 9462293--9462335 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
9462283 ATTTTAGGGT
**
9462293 TTTATGTTTAGGGTTTTTTA
1 TTTATGTTTAGGGTTTAGTA
9462313 TTTATGTTTAGGGTTTAGTA
1 TTTATGTTTAGGGTTTAGTA
9462333 TTT
1 TTT
9462336 TTAGGATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.21, T:0.63
Consensus pattern (20 bp):
TTTATGTTTAGGGTTTAGTA
Found at i:9462424 original size:21 final size:22
Alignment explanation
Indices: 9462380--9462426 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
9462370 AGTTTTATGA
*
9462380 TTTATGGTTTTATTGCTTATGG
1 TTTATGGTTTTATTGCTTAGGG
* *
9462402 TTTATGTTTTTA-TGTTTAGGG
1 TTTATGGTTTTATTGCTTAGGG
9462423 TTTA
1 TTTA
9462427 GGGGTTAGAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 11 0.50
22 11 0.50
ACGTcount: A:0.15, C:0.02, G:0.21, T:0.62
Consensus pattern (22 bp):
TTTATGGTTTTATTGCTTAGGG
Found at i:9462508 original size:22 final size:22
Alignment explanation
Indices: 9462467--9462551 Score: 95
Period size: 22 Copynumber: 3.9 Consensus size: 22
9462457 TGTTTGTGGT
9462467 TTTATGATTTTA--TTTCTTAGTG
1 TTTAT-ATTTTAGGTTT-TTAGTG
*
9462489 TTTATATTTTAGGTTTTTAGGG
1 TTTATATTTTAGGTTTTTAGTG
*
9462511 TTTATATTTTAGG-TTTTATTG
1 TTTATATTTTAGGTTTTTAGTG
* *
9462532 TTTATGTTTTAGGGTTTTAG
1 TTTATATTTTAGGTTTTTAG
9462552 GATACATGGT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
21 24 0.44
22 28 0.51
23 3 0.05
ACGTcount: A:0.18, C:0.01, G:0.19, T:0.62
Consensus pattern (22 bp):
TTTATATTTTAGGTTTTTAGTG
Found at i:9462578 original size:15 final size:15
Alignment explanation
Indices: 9462503--9462581 Score: 54
Period size: 15 Copynumber: 5.4 Consensus size: 15
9462493 TATTTTAGGT
*
9462503 TTTTAGGGTTTATA-
1 TTTTAGGATTTATAG
* *
9462517 TTTTAGGTTTTATTG
1 TTTTAGGATTTATAG
* * **
9462532 -TTTATGTTTTAGGG
1 TTTTAGGATTTATAG
** *
9462546 TTTTAGGATACATGG
1 TTTTAGGATTTATAG
9462561 TTTTAGGATTTATAG
1 TTTTAGGATTTATAG
9462576 TTTTAG
1 TTTTAG
9462582 TGTTTTTAGG
Statistics
Matches: 50, Mismatches: 13, Indels: 3
0.76 0.20 0.05
Matches are distributed among these distances:
14 23 0.46
15 27 0.54
ACGTcount: A:0.20, C:0.01, G:0.23, T:0.56
Consensus pattern (15 bp):
TTTTAGGATTTATAG
Found at i:9462613 original size:46 final size:43
Alignment explanation
Indices: 9462560--9462717 Score: 134
Period size: 46 Copynumber: 3.7 Consensus size: 43
9462550 AGGATACATG
* *
9462560 GTTTTAGGATTTATA-GTTTTAGTGTTTTTAGGGTTCATTGCTTGT
1 GTTTTAGGTTTTA-AGGTTTTA-TGTTTTTAAGGTT-ATTGCTTGT
* * *
9462605 GTTGTTAGGTTTTAAGGTTTTAAGGTTTTAAGGTT-TAG---G-
1 GTT-TTAGGTTTTAAGGTTTTATGTTTTTAAGGTTATTGCTTGT
9462644 G-TTTAGGTTTTATA-GTTTTATAGTTTTTAAGGTTTATTGCTTGT
1 GTTTTAGGTTTTA-AGGTTTTAT-GTTTTTAAGG-TTATTGCTTGT
*
9462688 GTTATTAGGTTTTAATGTTTTATGTTTTTA
1 GTT-TTAGGTTTTAAGGTTTTATGTTTTTA
9462718 TGTTTAGGGT
Statistics
Matches: 92, Mismatches: 8, Indels: 26
0.73 0.06 0.21
Matches are distributed among these distances:
37 16 0.17
38 11 0.12
39 3 0.03
40 3 0.03
43 3 0.03
44 1 0.01
45 23 0.25
46 32 0.35
ACGTcount: A:0.18, C:0.02, G:0.23, T:0.56
Consensus pattern (43 bp):
GTTTTAGGTTTTAAGGTTTTATGTTTTTAAGGTTATTGCTTGT
Found at i:9462624 original size:8 final size:8
Alignment explanation
Indices: 9462611--9462678 Score: 72
Period size: 8 Copynumber: 8.8 Consensus size: 8
9462601 TTGTGTTGTT
9462611 AGGTTTTA
1 AGGTTTTA
9462619 AGGTTTTA
1 AGGTTTTA
9462627 AGGTTTTA
1 AGGTTTTA
9462635 AGG-TTT-
1 AGGTTTTA
*
9462641 AGGGTTT-
1 AGGTTTTA
9462648 AGGTTTTA
1 AGGTTTTA
9462656 TA-GTTTTA
1 -AGGTTTTA
*
9462664 TAGTTTTTA
1 -AGGTTTTA
9462673 AGGTTT
1 AGGTTT
9462679 ATTGCTTGTG
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
6 3 0.06
7 12 0.23
8 32 0.60
9 6 0.11
ACGTcount: A:0.22, C:0.00, G:0.25, T:0.53
Consensus pattern (8 bp):
AGGTTTTA
Found at i:9462663 original size:83 final size:82
Alignment explanation
Indices: 9462562--9462737 Score: 246
Period size: 83 Copynumber: 2.1 Consensus size: 82
9462552 GATACATGGT
* *
9462562 TTTAGGATTTATAGTTTTAGT-GTTTTTAGGGTTCATTGCTTGTGTTGTTAGGTTTTAAGGTTTT
1 TTTAGGATTTATAGTTTTA-TAGTTTTTAAGGTTCATTGCTTGTGTTATTAGGTTTTAAGGTTTT
9462626 AAGGTTTTAAGGTTTAGGG
65 -AGGTTTTAAGGTTTAGGG
* * *
9462645 TTTAGGTTTTATAGTTTTATAGTTTTTAAGGTTTATTGCTTGTGTTATTAGGTTTTAATGTTTTA
1 TTTAGGATTTATAGTTTTATAGTTTTTAAGGTTCATTGCTTGTGTTATTAGGTTTTAAGGTTTTA
* * *
9462710 TGTTTTTATGTTTAGGG
66 GGTTTTAAGGTTTAGGG
9462727 TTTAAGGATTT
1 TTT-AGGATTT
9462738 CTTATGTATG
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
82 19 0.23
83 63 0.77
ACGTcount: A:0.19, C:0.02, G:0.24, T:0.56
Consensus pattern (82 bp):
TTTAGGATTTATAGTTTTATAGTTTTTAAGGTTCATTGCTTGTGTTATTAGGTTTTAAGGTTTTA
GGTTTTAAGGTTTAGGG
Found at i:9462802 original size:14 final size:14
Alignment explanation
Indices: 9462744--9462863 Score: 55
Period size: 14 Copynumber: 8.3 Consensus size: 14
9462734 ATTTCTTATG
*
9462744 TATGCTTTAGGGTT
1 TATGTTTTAGGGTT
* *
9462758 TGTGGTTTTAGGATTT
1 TAT-GTTTTAGG-GTT
**
9462774 TAT-TTCTTATTGTT
1 TATGTT-TTAGGGTT
9462788 TATGTTTTAGGGTT
1 TATGTTTTAGGGTT
***
9462802 TA-GTATTTATATTT
1 TATGT-TTTAGGGTT
*
9462816 TAGGTTTTAGGGTT
1 TATGTTTTAGGGTT
* *
9462830 TATGATTTATGGTTT
1 TATGTTTTA-GGGTT
* *
9462845 TGTGTTTTTAGCGTT
1 TATG-TTTTAGGGTT
9462860 TATG
1 TATG
9462864 GTTAATGGTT
Statistics
Matches: 75, Mismatches: 23, Indels: 15
0.66 0.20 0.13
Matches are distributed among these distances:
13 2 0.03
14 38 0.51
15 27 0.36
16 8 0.11
ACGTcount: A:0.16, C:0.03, G:0.23, T:0.58
Consensus pattern (14 bp):
TATGTTTTAGGGTT
Done.