Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 35 of 199
Found at i:14113299 original size:17 final size:16
Alignment explanation
Indices: 14113277--14113323 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
14113267 ACTCAAATCA
14113277 TAATATATGATTATAAC
1 TAATATATGATT-TAAC
*
14113294 T-A-ATATGATTTAAT
1 TAATATATGATTTAAC
14113308 TAAATATATGATTTAA
1 T-AATATATGATTTAA
14113324 TAAAATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
14 4 0.15
15 8 0.31
16 2 0.08
17 12 0.46
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (16 bp):
TAATATATGATTTAAC
Found at i:14113324 original size:17 final size:17
Alignment explanation
Indices: 14113296--14113329 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
14113286 ATTATAACTA
*
14113296 ATATGATTTAATTAAAT
1 ATATGATTTAATAAAAT
14113313 ATATGATTTAATAAAAT
1 ATATGATTTAATAAAAT
14113330 TTAAAATTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (17 bp):
ATATGATTTAATAAAAT
Found at i:14131149 original size:29 final size:30
Alignment explanation
Indices: 14131090--14131147 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
14131080 TCCGAGCCTT
*
14131090 GGGGCAAAAATGTAATTATGCAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
*
14131120 GGGGC-AAAATCGTAATTTTGAAAAAGTT
1 GGGGCAAAAAT-GTAATTATGAAAAAGTT
14131148 AGAGTCAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.28
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:14131562 original size:50 final size:50
Alignment explanation
Indices: 14131486--14131776 Score: 402
Period size: 50 Copynumber: 5.8 Consensus size: 50
14131476 TTGGGTAAAA
* *
14131486 AGGTCCCATGTAAGACCATGCCTGGGACATGGCATTGGCACCGAGATGAG
1 AGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG
* * *
14131536 AGGTCCCATATAAGACCATGTTTGGGACATGACATTGGCACCGAGATGAT
1 AGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG
* *
14131586 AGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAG
1 AGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG
* *
14131636 AGGTCCCATATAAGACCATGTCTGGGACATAGCGTTGGCACCGAGATGAG
1 AGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG
*** * *
14131686 AGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGACATGAG
1 AGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG
** * * *
14131736 TACATCCCATGTAAGACCATGTCTGGGACATGACTTTGGCA
1 -AGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCA
14131777 AGTTATGATC
Statistics
Matches: 212, Mismatches: 28, Indels: 1
0.88 0.12 0.00
Matches are distributed among these distances:
50 179 0.84
51 33 0.16
ACGTcount: A:0.27, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGGTCCCATATAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAG
Found at i:14133481 original size:11 final size:11
Alignment explanation
Indices: 14133465--14133494 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
14133455 TTCAATTCAA
14133465 ATAATCAATAT
1 ATAATCAATAT
14133476 ATAATCAATAT
1 ATAATCAATAT
14133487 ATATATCA
1 ATA-ATCA
14133495 TTTCAATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.78
12 4 0.22
ACGTcount: A:0.53, C:0.10, G:0.00, T:0.37
Consensus pattern (11 bp):
ATAATCAATAT
Found at i:14136905 original size:7 final size:7
Alignment explanation
Indices: 14136893--14136923 Score: 55
Period size: 7 Copynumber: 4.6 Consensus size: 7
14136883 ATTAGTTTAA
14136893 ATTTAGT
1 ATTTAGT
14136900 ATTTAGT
1 ATTTAGT
14136907 ATTTAGT
1 ATTTAGT
14136914 ATTTA-T
1 ATTTAGT
14136920 ATTT
1 ATTT
14136924 TAATTTGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.29, C:0.00, G:0.10, T:0.61
Consensus pattern (7 bp):
ATTTAGT
Found at i:14136912 original size:14 final size:13
Alignment explanation
Indices: 14136888--14136923 Score: 54
Period size: 14 Copynumber: 2.7 Consensus size: 13
14136878 TTTTCATTAG
*
14136888 TTTAAATTTAGTA
1 TTTATATTTAGTA
14136901 TTTAGTATTTAGTA
1 TTTA-TATTTAGTA
14136915 TTTATATTT
1 TTTATATTT
14136924 TAATTTGACT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.43
14 12 0.57
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (13 bp):
TTTATATTTAGTA
Found at i:14141981 original size:45 final size:45
Alignment explanation
Indices: 14141927--14142060 Score: 213
Period size: 44 Copynumber: 3.0 Consensus size: 45
14141917 ATCCCGTCTT
*
14141927 TGTAA-CTTAACCATGA-TTACGTAACAACTAACGGAGCCCATTAC
1 TGTAATCTTAACCGT-ATTTACGTAACAACTAACGGAGCCCATTAC
14141971 TGTAATCTTAACCGTATTTACGT-ACAACTAACGGAGCCCATTAC
1 TGTAATCTTAACCGTATTTACGTAACAACTAACGGAGCCCATTAC
*
14142015 TGTAATCTCAACCGTATTTACGTAA-AACTAACGGAGCCCATTAC
1 TGTAATCTTAACCGTATTTACGTAACAACTAACGGAGCCCATTAC
14142059 TG
1 TG
14142061 ATTTTAACAG
Statistics
Matches: 85, Mismatches: 2, Indels: 6
0.91 0.02 0.06
Matches are distributed among these distances:
44 70 0.82
45 15 0.18
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.28
Consensus pattern (45 bp):
TGTAATCTTAACCGTATTTACGTAACAACTAACGGAGCCCATTAC
Found at i:14153984 original size:31 final size:31
Alignment explanation
Indices: 14153949--14154024 Score: 89
Period size: 31 Copynumber: 2.5 Consensus size: 31
14153939 AACAAAATTA
* ** *
14153949 AATAGTTGGATGATCAAAGTAGAAATTTACT
1 AATAGTTGGATGACCAAAAAAGAAACTTACT
* *
14153980 AATAGTTAGATAACCAAAAAAGAAACTTACT
1 AATAGTTGGATGACCAAAAAAGAAACTTACT
*
14154011 AATAATTGGATGAC
1 AATAGTTGGATGAC
14154025 TACTAATGCG
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.47, C:0.09, G:0.16, T:0.28
Consensus pattern (31 bp):
AATAGTTGGATGACCAAAAAAGAAACTTACT
Found at i:14158941 original size:19 final size:21
Alignment explanation
Indices: 14158917--14158959 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
14158907 GCACCTAGGA
14158917 TGATTGT-TTTGA-CATGTTT
1 TGATTGTATTTGATCATGTTT
*
14158936 TGATTGTATTTGATCGTGTTT
1 TGATTGTATTTGATCATGTTT
14158957 TGA
1 TGA
14158960 ACTGGTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 7 0.33
20 5 0.24
21 9 0.43
ACGTcount: A:0.16, C:0.05, G:0.23, T:0.56
Consensus pattern (21 bp):
TGATTGTATTTGATCATGTTT
Found at i:14160544 original size:11 final size:11
Alignment explanation
Indices: 14160509--14160640 Score: 112
Period size: 11 Copynumber: 12.9 Consensus size: 11
14160499 ACCAAAAATT
14160509 TATTTT-AAAA
1 TATTTTAAAAA
14160519 -ATTTTAAAAA
1 TATTTTAAAAA
14160529 TTATTTTAAAAA
1 -TATTTTAAAAA
14160541 TATTTT--AAA
1 TATTTTAAAAA
14160550 -A--TTAAAAA
1 TATTTTAAAAA
14160558 -A-TTTAAAAA
1 TATTTTAAAAA
14160567 TATTTTAAAAA
1 TATTTTAAAAA
14160578 TATTTTAAAAA
1 TATTTTAAAAA
14160589 TATTTT--AAA
1 TATTTTAAAAA
14160598 -A--TTAAAAA
1 TATTTTAAAAA
*
14160606 AATTTTAAAAAAA
1 TATTTT--AAAAA
*
14160619 GTATTTTAAAAG
1 -TATTTTAAAAA
14160631 TATTTTAAAA
1 TATTTTAAAA
14160641 TTAAAAAAAA
Statistics
Matches: 104, Mismatches: 2, Indels: 31
0.76 0.01 0.23
Matches are distributed among these distances:
6 4 0.04
8 9 0.09
9 19 0.18
10 5 0.05
11 43 0.41
12 14 0.13
13 5 0.05
14 5 0.05
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (11 bp):
TATTTTAAAAA
Found at i:14160580 original size:37 final size:38
Alignment explanation
Indices: 14160513--14160587 Score: 134
Period size: 37 Copynumber: 2.0 Consensus size: 38
14160503 AAAATTTATT
*
14160513 TTAAAAATTTTAAAAATTATTTTAAAAATATTTTAAAA
1 TTAAAAAATTTAAAAATTATTTTAAAAATATTTTAAAA
14160551 TTAAAAAATTTAAAAA-TATTTTAAAAATATTTTAAAA
1 TTAAAAAATTTAAAAATTATTTTAAAAATATTTTAAAA
14160588 ATATTTTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 21 0.58
38 15 0.42
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (38 bp):
TTAAAAAATTTAAAAATTATTTTAAAAATATTTTAAAA
Found at i:14160589 original size:48 final size:49
Alignment explanation
Indices: 14160510--14160640 Score: 185
Period size: 48 Copynumber: 2.6 Consensus size: 49
14160500 CCAAAAATTT
*
14160510 ATTTTAAAA-ATTTTAAAAATTATTTTAAAAATATTTTAAAATT-AAAAA
1 ATTTAAAAATATTTTAAAAA-TATTTTAAAAATATTTTAAAATTAAAAAA
14160558 ATTTAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAATTAAAAAA
1 ATTTAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAATTAAAAAA
*
14160607 ATTTTAAAAAAAGTATTTTAAAAGTATTTTAAAA
1 A-TTT--AAAAA-TATTTTAAAAATATTTTAAAA
14160641 TTAAAAAAAA
Statistics
Matches: 75, Mismatches: 2, Indels: 7
0.89 0.02 0.08
Matches are distributed among these distances:
48 31 0.41
49 16 0.21
50 3 0.04
52 5 0.07
53 20 0.27
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (49 bp):
ATTTAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAATTAAAAAA
Found at i:14160624 original size:42 final size:39
Alignment explanation
Indices: 14160522--14160649 Score: 145
Period size: 42 Copynumber: 3.2 Consensus size: 39
14160512 TTTAAAAATT
* **
14160522 TTAAAAATTATTTTAAAAATATTTT--AAA-ATTAAAAAA
1 TTAAAAA-AATTTTAAAAATATTTTAAAAATATTTTAAAA
*
14160559 TTTAAAAATATTTTAAAAATATTTTAAAAATATTTTAAAA
1 -TTAAAAAAATTTTAAAAATATTTTAAAAATATTTTAAAA
*
14160599 TTAAAAAAATTTTAAAAAAAGTATTTTAAAAGTATTTTAAAA
1 TTAAAAAAATTTT--AAAAA-TATTTTAAAAATATTTTAAAA
14160641 TTAAAAAAA
1 TTAAAAAAA
14160650 ATAAAAAAAA
Statistics
Matches: 80, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
37 17 0.21
38 7 0.09
39 15 0.19
40 7 0.09
41 5 0.06
42 29 0.36
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.40
Consensus pattern (39 bp):
TTAAAAAAATTTTAAAAATATTTTAAAAATATTTTAAAA
Found at i:14160658 original size:42 final size:41
Alignment explanation
Indices: 14160573--14160664 Score: 130
Period size: 42 Copynumber: 2.2 Consensus size: 41
14160563 AAAATATTTT
* *
14160573 AAAAATATTTTAAAAATATTTTAAAATTAAAAAAATTTTAAA
1 AAAAATATTTTAAAAATATTTTAAAATTAAAAAAA-ATAAAA
* *
14160615 AAAAGTATTTTAAAAGTATTTTAAAATTAAAAAAAATAAAA
1 AAAAATATTTTAAAAATATTTTAAAATTAAAAAAAATAAAA
*
14160656 AAAATTATT
1 AAAAATATT
14160665 ATATTTGGGC
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
41 12 0.27
42 33 0.73
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (41 bp):
AAAAATATTTTAAAAATATTTTAAAATTAAAAAAAATAAAA
Found at i:14165493 original size:29 final size:30
Alignment explanation
Indices: 14165440--14165498 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
14165430 TAGGTTGACA
*
14165440 TAATATAGAAACAAATAATTATA-TTATTT
1 TAATATAAAAACAAATAATTATATTTATTT
*
14165469 TAATATAAAAATAAATAAATT-TATTTATTT
1 TAATATAAAAACAAAT-AATTATATTTATTT
14165499 AAACATGTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
29 16 0.62
30 10 0.38
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (30 bp):
TAATATAAAAACAAATAATTATATTTATTT
Found at i:14176268 original size:26 final size:26
Alignment explanation
Indices: 14176232--14176306 Score: 89
Period size: 26 Copynumber: 2.9 Consensus size: 26
14176222 GAAGCTTCTG
*
14176232 AGAGCCATTAATTAGGAAGCTCACAA
1 AGAGCCATTAATCAGGAAGCTCACAA
* * *
14176258 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAGGAAGCTCACAA
*
14176284 AGAGCCATATAA-CAGGATGCTCA
1 AGAGCCAT-TAATCAGGAAGCTCA
14176307 TAAGAGCTGT
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 38 0.93
27 3 0.07
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AGAGCCATTAATCAGGAAGCTCACAA
Found at i:14186309 original size:13 final size:13
Alignment explanation
Indices: 14186276--14186302 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
14186266 CCAGTCAATC
14186276 ATTCAAAGCATAA
1 ATTCAAAGCATAA
14186289 ATTCAAAGCATAA
1 ATTCAAAGCATAA
14186302 A
1 A
14186303 GTTAAAGAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.56, C:0.15, G:0.07, T:0.22
Consensus pattern (13 bp):
ATTCAAAGCATAA
Found at i:14187073 original size:22 final size:22
Alignment explanation
Indices: 14187042--14187090 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
14187032 TTCTTAGTAG
14187042 TTGAAACAGCTGGTTCGA-CTAA
1 TTGAAACAGCTGGTTCGATC-AA
*
14187064 TTGAATCAGCTGGTTCGATCAA
1 TTGAAACAGCTGGTTCGATCAA
14187086 TTGAA
1 TTGAA
14187091 CCGGTTGAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (22 bp):
TTGAAACAGCTGGTTCGATCAA
Found at i:14193616 original size:23 final size:23
Alignment explanation
Indices: 14193581--14193626 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14193571 TTACTTTTTC
*
14193581 ATTTTTTAAATTGAGTTTTAATT
1 ATTTTTTAAATTGAGTTTCAATT
** *
14193604 ATTTTTTGGATTGCGTTTCAATT
1 ATTTTTTAAATTGAGTTTCAATT
14193627 CAGACACTCT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.24, C:0.04, G:0.13, T:0.59
Consensus pattern (23 bp):
ATTTTTTAAATTGAGTTTCAATT
Found at i:14202489 original size:2 final size:2
Alignment explanation
Indices: 14202476--14202507 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
14202466 CTCCCCACTT
*
14202476 TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
14202508 GCTGCGTGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (2 bp):
TC
Found at i:14218889 original size:2 final size:2
Alignment explanation
Indices: 14218882--14218911 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
14218872 ACTTTCTTTA
14218882 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
14218912 ATATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:14263021 original size:88 final size:89
Alignment explanation
Indices: 14262885--14263624 Score: 642
Period size: 88 Copynumber: 8.4 Consensus size: 89
14262875 ATATTGGTAG
* *
14262885 GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
14262949 GATCTTGTCTTCATGTATTGGCGT
66 GATCTTGTCTTCATGTATTGGCGT
* * * * * * *
14262973 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
*** * *
14263036 GATCTTGTCTTCCCATATTGGTGGC
66 GATCTTGTCTTCATGTATTGG-CGT
* * *** * * **
14263061 GAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGGTAGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
* * * * *
14263125 GATCCTATCTTCCTATATTGGTAG-
66 GATCTTGTCTTCATGTATTGG-CGT
* * * * *
14263149 GAAGTGGATCGAAGAT-GCAGATCTTGTCTTCCCGTATTAGTGGCGAAGTAGATCGCAGAAAGTA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
14263213 GATCTTGTCTTCATGTATTGGCGT
66 GATCTTGTCTTCATGTATTGGCGT
*
14263237 GAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
14263301 GATCTTGTCTTCATGTATTGGCGT
66 GATCTTGTCTTCATGTATTGGCGT
* * * * * * * * *
14263325 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAG-ATGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
*** * *
14263388 GATCTTGTCTTCCCATATTGGTGGC
66 GATCTTGTCTTCATGTATTGG-CGT
* * *** * * *
14263413 GAAGTAGATCGCAGAAAGCAG-TCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATAGCA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
* * * * * **
14263476 GGTCCTATCTTCCTATATTGATAG-
66 GATCTTGTCTTCATGTATTG-GCGT
* * * * * *
14263500 GAAGTGGATCCAAGAT-GCAGATCTTGTCTTCCCATACTAGTGGTGAAGTAGATCGAAAAAAAAA
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG----AAGAA
* * **
14263564 AGCAGATCTTGTATTCATATATTGGTTT
62 AGCAGATCTTGTCTTCATGTATTGGCGT
* *
14263592 GAAGTAGATCGAAGATTGCAGATCTTGCCTTCC
1 GAAGTAGATCGAAGATAGCAGATCTTGTCTTCC
14263625 TGTATTTGGC
Statistics
Matches: 527, Mismatches: 106, Indels: 33
0.79 0.16 0.05
Matches are distributed among these distances:
86 5 0.01
87 119 0.23
88 285 0.54
89 67 0.13
92 36 0.07
93 15 0.03
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (89 bp):
GAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
GATCTTGTCTTCATGTATTGGCGT
Found at i:14263100 original size:132 final size:132
Alignment explanation
Indices: 14262863--14263312 Score: 758
Period size: 132 Copynumber: 3.4 Consensus size: 132
14262853 CGTAAATAGG
*
14262863 TCCTATCTTCCTATATTGGTAGGAAGTGGATCAAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
*
14262928 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
14262993 GA
131 GA
14262995 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
14263060 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
14263125 GA
131 GA
* *
14263127 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCGTATTAGTGG
1 TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
* *
14263192 CGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCA
66 CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
14263256 GA
131 GA
* * * * * * *
14263258 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTC
1 TCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCAGATCTTGTCTTC
14263313 ATGTATTGGC
Statistics
Matches: 303, Mismatches: 13, Indels: 3
0.95 0.04 0.01
Matches are distributed among these distances:
131 23 0.08
132 264 0.87
133 16 0.05
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (132 bp):
TCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGG
CGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCA
GA
Found at i:14263317 original size:220 final size:219
Alignment explanation
Indices: 14262885--14263530 Score: 865
Period size: 220 Copynumber: 2.9 Consensus size: 219
14262875 ATATTGGTAG
* * * * * * * *
14262885 GAAGTGGATCAAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGAAAGCA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAG-GAAGTGGATCGAAG-ATGCA
** * * ** * * * *
14262949 GATCTTGTCTTCATGTATTG-GCGTGAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTG
64 GATCTTGTCTTCCCGTATTGTG-GCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTG
* *
14263013 GTAG-GAAGTGGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
128 G-CGTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAA
14263077 AGCAGATCTTGTCTTCATGTATTGGCGT
192 AGCAGATCTTGTCTTCATGTATTGGCGT
*
14263105 GAAGTAGATCGAAGGTAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
14263170 TCTTGTCTTCCCGTATTAGTGGCGAAGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCGTATT-GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
14263235 GTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGC
130 GTGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGC
14263300 AGATCTTGTCTTCATGTATTGGCGT
195 AGATCTTGTCTTCATGTATTGGCGT
* * *
14263325 GAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAGGAAGTGGATCCAAGATGCAGA
1 GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
*
14263390 TCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG-TCTTGTCTTCATGTATTGGC
66 TCTTGTCTTCCCGTATT-GTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGC
* * * * * * * *
14263454 GTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATC-CA-AGAT
130 GTGAAGTAGATCGAAGAT-GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGA-AA
14263516 GCAGATCTTGTCTTC
193 GCAGATCTTGTCTTC
14263531 CCATACTAGT
Statistics
Matches: 383, Mismatches: 37, Indels: 14
0.88 0.09 0.03
Matches are distributed among these distances:
217 1 0.00
218 18 0.05
219 69 0.18
220 271 0.71
221 24 0.06
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.30
Consensus pattern (219 bp):
GAAGTAGATCGAAGATAGCAGATCCTATCTTCCTATATTGGTAGGAAGTGGATCGAAGATGCAGA
TCTTGTCTTCCCGTATTGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCG
TGAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCA
GATCTTGTCTTCATGTATTGGCGT
Found at i:14263329 original size:132 final size:131
Alignment explanation
Indices: 14262868--14263654 Score: 733
Period size: 132 Copynumber: 5.9 Consensus size: 131
14262858 ATAGGTCCTA
* * * * * * *
14262868 TCTTCCTATATTGGTAGGAAGTGGATCAAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
1 TCTTCCCATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATTGG-CGCGAA
*
14262932 GTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATC
65 GTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCAGATC
* *
14262997 CTA
129 TTG
* * * * * *
14263000 TCTTCCTATATTGGTAGGAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCATATTGGTGGCGAA
1 TCTTCCCATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATTGG-CGCGAA
* *
14263064 GTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAGCAGATC
65 GTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGAT-GCAGATC
* *
14263129 CTA
129 TTG
* * * * * *
14263132 TCTTCCTATATTGGTAGGAAGTGGATCGAAG-ATGCAGATCTTGTCTTCCCGTATTAGTG-GCGA
1 TCTTCCCATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATT-G-GCGCGA
* *
14263195 AGTAGATCGCAGAAAGTAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATC
64 AGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATC
14263260 TTG
129 TTG
* ** *
14263263 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATTGGCGCGAA
* * * * * * ** * *
14263328 GTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGATGCAGATC
65 GTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG-GCGTGAAGTAGATCGAAGATGCAGATC
14263392 TTG
129 TTG
* ** *
14263395 TCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG-TCTTGTCTTCATGTATTGGCGTGAA
1 TCTTCCCATATTGGTGG-GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATTGGCGCGAA
* * * * * * ** * *
14263459 GTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGATAG-GAAGTGGATCCAAGATGCAGATC
65 GTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTG-GCGTGAAGTAGATCGAAGATGCAGATC
14263523 TTG
129 TTG
* * * * * **
14263526 TCTTCCCATACTAGTGGTGAAGTAGATCGAAAAAAAAAAGCAGATCTTGTATTCATATATTGGTT
1 TCTTCCCATATTGGTGG-GAAGTAGATCG----AAGAAAGCAGATCTTGTCTTCACATATTGGCG
* ** * * * * *
14263591 TGAAGTAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATG
61 CGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTA-TTGGC-GTGAAGTAGATCGAAGATG
14263655 GAGGATTTTA
Statistics
Matches: 594, Mismatches: 47, Indels: 22
0.90 0.07 0.03
Matches are distributed among these distances:
131 142 0.24
132 353 0.59
133 23 0.04
134 1 0.00
135 8 0.01
136 49 0.08
137 4 0.01
138 14 0.02
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (131 bp):
TCTTCCCATATTGGTGGGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCACATATTGGCGCGAAG
TAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATGCAGATCTT
G
Found at i:14263496 original size:131 final size:132
Alignment explanation
Indices: 14263237--14263612 Score: 601
Period size: 131 Copynumber: 2.8 Consensus size: 132
14263227 GTATTGGCGT
* *
14263237 GAAGTAGATCGAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
14263302 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGAT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGAT
14263367 AG
131 AG
14263369 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
14263434 -TCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGAT
66 ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGAT
14263498 AG
131 AG
* * * * *
14263500 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATACTAGTGGTGAAGTAGATCGAAAAAAAAAA
1 GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCG----CAGAAA
* * ** *
14263565 GCAGATCTTGTATTCATATATTGGTTTGAAGTAGATCGAAGATTGCAG
62 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAG
14263613 ATCTTGCCTT
Statistics
Matches: 227, Mismatches: 12, Indels: 6
0.93 0.05 0.02
Matches are distributed among these distances:
131 118 0.52
132 63 0.28
135 8 0.04
136 38 0.17
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (132 bp):
GAAGTGGATCCAAGATGCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGCAGAAAGCAG
ATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGGTCCTATCTTCCTATATTGAT
AG
Found at i:14263840 original size:134 final size:134
Alignment explanation
Indices: 14263596--14263848 Score: 402
Period size: 134 Copynumber: 1.9 Consensus size: 134
14263586 TGGTTTGAAG
*
14263596 TAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGGAGGAT
1 TAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGCAGGAT
*
14263661 TTTACCTCCCTGACTACAGTGGAGTACATTGAAGCCGATAATTCTA-TCTCCCTGTATTTGGCAG
66 TTTACCTCACTGACTACAGTGGAGTACATTGAAGCCGATAATTCTACT-TCCCTGTATTTGGCAG
14263725 TGGAA
130 TGGAA
* *
14263730 TAGATTGAAGATTGCAGATCTTGCCTTCTTGTATTTGGCAGCGAAGCAGATCAAAGATGTCA-GA
1 TAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATG-CAGGA
* * * *
14263794 TTTTACCTCACTGATTACAGTGGAGTACATTGAAGCTGTTAGTTCTACTTCCCTG
65 TTTTACCTCACTGACTACAGTGGAGTACATTGAAGCCGATAATTCTACTTCCCTG
14263849 GGAAACAGTG
Statistics
Matches: 109, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
134 107 0.98
135 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.31
Consensus pattern (134 bp):
TAGATCGAAGATTGCAGATCTTGCCTTCCTGTATTTGGCAGCGAAGCAGATCAAAGATGCAGGAT
TTTACCTCACTGACTACAGTGGAGTACATTGAAGCCGATAATTCTACTTCCCTGTATTTGGCAGT
GGAA
Found at i:14263933 original size:40 final size:40
Alignment explanation
Indices: 14263879--14264030 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
14263869 AAGATTACAA
* *
14263879 TCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
** *
14263919 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAACCACAG
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GCATCA-AG
* * *
14263960 ATCTTATTTCCCTAAGCAATAGTGGAACAGATCGCATCAAG
1 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
*
14264001 TCTTATCTCCCTAAGTAGTAGTGGAGCAGA
1 TCTTATCTCCCTAAGCAGTAGTGGAGCAGA
14264031 CTAAAAACAC
Statistics
Matches: 93, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
39 1 0.01
40 57 0.61
41 4 0.04
42 30 0.32
43 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.26
Consensus pattern (40 bp):
TCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGCATCAAG
Found at i:14263972 original size:82 final size:83
Alignment explanation
Indices: 14263877--14264046 Score: 261
Period size: 82 Copynumber: 2.1 Consensus size: 83
14263867 CGAAGATTAC
* ** *
14263877 AATCTTATCTCCCTAAGCAGTAGTGGAGTAGATCGCATTAAGTCTTATCTCCCTAAGCAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGGAACAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
*
14263942 GAGCAGAC-AAAACCACA
66 GAGCAGACTAAAAACACA
* * *
14263959 GATCTTATTTCCCTAAGCAATAGTGGAACAGATCGCATCAAGTCTTATCTCCCTAAGTAGTAGTG
1 AATCTTATCTCCCTAAGCAATAGTGGAACAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
14264024 GAGCAGACTAAAAACACA
66 GAGCAGACTAAAAACACA
14264042 AATCT
1 AATCT
14264047 CATCCCCATG
Statistics
Matches: 78, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
82 66 0.85
83 12 0.15
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (83 bp):
AATCTTATCTCCCTAAGCAATAGTGGAACAGATCGCATCAAGTCTTATCTCCCTAAGCAGTAGTG
GAGCAGACTAAAAACACA
Found at i:14263983 original size:42 final size:42
Alignment explanation
Indices: 14263878--14264046 Score: 143
Period size: 40 Copynumber: 4.1 Consensus size: 42
14263868 GAAGATTACA
* ** **
14263878 ATCTTATCTCCCTAAGCAGTAGTGGAGTAGATC-GCATTA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAACACAG
*
14263919 -TCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAACCACAG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAACACAG
* * * ** *
14263960 ATCTTATTTCCCTAAGCAATAGTGGAACAGATC-GCATCA-AG
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGA-CAAAAACACAG
* *
14264001 -TCTTATCTCCCTAAGTAGTAGTGGAGCAGACTAAAAACACAA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGAC-AAAAACACAG
14264043 ATCT
1 ATCT
14264047 CATCCCCATG
Statistics
Matches: 101, Mismatches: 19, Indels: 14
0.75 0.14 0.10
Matches are distributed among these distances:
39 2 0.02
40 57 0.56
41 7 0.07
42 31 0.31
43 4 0.04
ACGTcount: A:0.34, C:0.22, G:0.18, T:0.25
Consensus pattern (42 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGACAAAAACACAG
Found at i:14265445 original size:3 final size:3
Alignment explanation
Indices: 14265417--14265476 Score: 57
Period size: 3 Copynumber: 19.3 Consensus size: 3
14265407 CTTGTCATTT
* * * *
14265417 TTA TTA GTA TTA TTA GTA TTA CTA TTA TTA TTA TTA TGTA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
*
14265463 TATA TTT TTA TTA T
1 T-TA TTA TTA TTA T
14265477 GTACGCGTAT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
3 39 0.87
4 6 0.13
ACGTcount: A:0.32, C:0.02, G:0.07, T:0.60
Consensus pattern (3 bp):
TTA
Found at i:14265473 original size:23 final size:22
Alignment explanation
Indices: 14265418--14265479 Score: 81
Period size: 23 Copynumber: 2.8 Consensus size: 22
14265408 TTGTCATTTT
*
14265418 TATTAGTATTATTA-GTATTAC
1 TATTATTATTATTATGTATTAC
*
14265439 TATTATTATTATTATGTATTAG
1 TATTATTATTATTATGTATTAC
*
14265461 TATATATTTTTATTATGTA
1 TAT-TATTATTATTATGTA
14265480 CGCGTATACA
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 13 0.36
22 9 0.25
23 14 0.39
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (22 bp):
TATTATTATTATTATGTATTAC
Found at i:14265486 original size:23 final size:23
Alignment explanation
Indices: 14265442--14265487 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
14265432 GTATTACTAT
**
14265442 TATTATTATTATGTATTAGTATA
1 TATTATTATTATGTACGAGTATA
* *
14265465 TATTTTTATTATGTACGCGTATA
1 TATTATTATTATGTACGAGTATA
14265488 CATATATATA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.04, G:0.11, T:0.54
Consensus pattern (23 bp):
TATTATTATTATGTACGAGTATA
Found at i:14265945 original size:28 final size:29
Alignment explanation
Indices: 14265897--14265959 Score: 74
Period size: 29 Copynumber: 2.1 Consensus size: 29
14265887 TTTACACTAT
* *
14265897 TATATACATTTTTTCTAATAT-TATATTG
1 TATATACATTGTTTATAATATATATATTG
14265925 TATATACTATTGTTTATATATATATATATGTG
1 TATATAC-ATTGTTTATA-ATATATATAT-TG
14265957 TAT
1 TAT
14265960 GTATTTATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
28 7 0.24
29 8 0.28
30 4 0.14
31 5 0.17
32 5 0.17
ACGTcount: A:0.33, C:0.05, G:0.06, T:0.56
Consensus pattern (29 bp):
TATATACATTGTTTATAATATATATATTG
Found at i:14266368 original size:38 final size:37
Alignment explanation
Indices: 14266284--14266378 Score: 97
Period size: 38 Copynumber: 2.5 Consensus size: 37
14266274 TATACGTACT
*
14266284 TATACATACTTAAATATATTTTTCATATTTCATAATTC
1 TATACATACTTAAATATATTTTGCATATTT-ATAATTC
* *
14266322 T-TATATACTTACATATATTTATGCATATTT-TACA-TC
1 TATACATACTTAAATATATTT-TGCATATTTATA-ATTC
*
14266358 ATATACATACTTATATATATT
1 -TATACATACTTAAATATATT
14266379 CTTTATATTC
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
36 4 0.08
37 19 0.40
38 25 0.52
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (37 bp):
TATACATACTTAAATATATTTTGCATATTTATAATTC
Found at i:14270069 original size:19 final size:19
Alignment explanation
Indices: 14270027--14270069 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
14270017 ATTTAAAAAT
**
14270027 AAAAAAATATAAACTATTT
1 AAAAAAATATAAACTATAA
* *
14270046 TAAAAAATATAAATTATAA
1 AAAAAAATATAAACTATAA
14270065 AAAAA
1 AAAAA
14270070 TATTTTTAAA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.28
Consensus pattern (19 bp):
AAAAAAATATAAACTATAA
Found at i:14273461 original size:21 final size:21
Alignment explanation
Indices: 14273435--14273604 Score: 85
Period size: 21 Copynumber: 8.2 Consensus size: 21
14273425 CGTGTTTACT
*
14273435 TTCTGTTTAGCTCTTATGAGC
1 TTCTGTTCAGCTCTTATGAGC
* * *
14273456 TTCTGTTCAACTCATATGAGT
1 TTCTGTTCAGCTCTTATGAGC
* * * *
14273477 TTCCGTTCAGCTATTTTGAGA
1 TTCTGTTCAGCTCTTATGAGC
* * * * * *
14273498 TTCTCTTTAACCCTCATGAGT
1 TTCTGTTCAGCTCTTATGAGC
* *
14273519 TTCCGTTCAGCTCTTACGAGC
1 TTCTGTTCAGCTCTTATGAGC
* * * *
14273540 TTCCGTTCAACCCTTATTG-GT
1 TTCTGTTCAGCTCTTA-TGAGC
* * **
14273561 TTCTGTTTAGCCCACATGAGC
1 TTCTGTTCAGCTCTTATGAGC
*
14273582 TTCTGTTCAGC-CTT-TGGGC
1 TTCTGTTCAGCTCTTATGAGC
14273601 TTCT
1 TTCT
14273605 AAAAATGATG
Statistics
Matches: 106, Mismatches: 41, Indels: 6
0.69 0.27 0.04
Matches are distributed among these distances:
19 8 0.08
20 3 0.03
21 94 0.89
22 1 0.01
ACGTcount: A:0.16, C:0.25, G:0.17, T:0.42
Consensus pattern (21 bp):
TTCTGTTCAGCTCTTATGAGC
Found at i:14273563 original size:42 final size:42
Alignment explanation
Indices: 14273434--14273556 Score: 131
Period size: 42 Copynumber: 2.9 Consensus size: 42
14273424 TCGTGTTTAC
* * * * *
14273434 TTTCTGTTTAGCTCTTATGAGCTTCTGTTCAACTCATATGAG
1 TTTCCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGAG
* * * * *
14273476 TTTCCGTTCAGCTATTTTGAGATTCTC-TTTAACCCTCATGAG
1 TTTCCGTTCAGCTCTTATGAGCTTC-CGTTCAACCCTTATGAG
*
14273518 TTTCCGTTCAGCTCTTACGAGCTTCCGTTCAACCCTTAT
1 TTTCCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTAT
14273557 TGGTTTCTGT
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
41 1 0.02
42 62 0.98
ACGTcount: A:0.18, C:0.25, G:0.15, T:0.42
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTTATGAGCTTCCGTTCAACCCTTATGAG
Found at i:14275360 original size:21 final size:21
Alignment explanation
Indices: 14275320--14275439 Score: 145
Period size: 21 Copynumber: 5.8 Consensus size: 21
14275310 TGAATACGCC
14275320 AACAGAAGCTC--AAAAGCTG
1 AACAGAAGCTCATAAAAGCTG
* *
14275339 AATAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAAAGCTG
* * *
14275360 AATAGAAGCTCGTAAAAGCTA
1 AACAGAAGCTCATAAAAGCTG
* *
14275381 AACAGAAGCTCATAAGAGTTG
1 AACAGAAGCTCATAAAAGCTG
*
14275402 AACAGAAGCTCGTAAAAGCTG
1 AACAGAAGCTCATAAAAGCTG
*
14275423 AACAGAAGCTCGTAAAA
1 AACAGAAGCTCATAAAA
14275440 CGTAAACAGA
Statistics
Matches: 86, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
19 10 0.12
21 76 0.88
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCATAAAAGCTG
Found at i:14275422 original size:63 final size:61
Alignment explanation
Indices: 14275320--14275450 Score: 183
Period size: 63 Copynumber: 2.1 Consensus size: 61
14275310 TGAATACGCC
* * *
14275320 AACAGAAGCTCAAAAGCTGAATAGAAGCTCATAAGAGCTGAATAGAAGCTCGTAAAA-GCTA
1 AACAGAAGCTCAAAAGCTGAACAGAAGCTCATAAAAGCTGAACAGAAGCTCGTAAAACG-TA
* *
14275381 AACAGAAGCTCATAAGAGTTGAACAGAAGCTCGTAAAAGCTGAACAGAAGCTCGTAAAACGTA
1 AACAGAAGCTCA-AA-AGCTGAACAGAAGCTCATAAAAGCTGAACAGAAGCTCGTAAAACGTA
14275444 AACAGAA
1 AACAGAA
14275451 AGTAAAACAC
Statistics
Matches: 62, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
61 12 0.19
62 2 0.03
63 47 0.76
64 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.21, T:0.15
Consensus pattern (61 bp):
AACAGAAGCTCAAAAGCTGAACAGAAGCTCATAAAAGCTGAACAGAAGCTCGTAAAACGTA
Found at i:14275450 original size:42 final size:42
Alignment explanation
Indices: 14275320--14275433 Score: 178
Period size: 42 Copynumber: 2.8 Consensus size: 42
14275310 TGAATACGCC
*
14275320 AACAGAAGCTC--AAAAGCTGAATAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCGTAAAAGCTGAACAGAAGCTCATAAGAGCTG
* * *
14275360 AATAGAAGCTCGTAAAAGCTAAACAGAAGCTCATAAGAGTTG
1 AACAGAAGCTCGTAAAAGCTGAACAGAAGCTCATAAGAGCTG
14275402 AACAGAAGCTCGTAAAAGCTGAACAGAAGCTC
1 AACAGAAGCTCGTAAAAGCTGAACAGAAGCTC
14275434 GTAAAACGTA
Statistics
Matches: 66, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 10 0.15
42 56 0.85
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCGTAAAAGCTGAACAGAAGCTCATAAGAGCTG
Found at i:14278543 original size:19 final size:19
Alignment explanation
Indices: 14278519--14278556 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
14278509 ACCCAGTTTA
14278519 CTTCTTTAACTAGAATTTC
1 CTTCTTTAACTAGAATTTC
14278538 CTTCTTTAACTAGAATTTC
1 CTTCTTTAACTAGAATTTC
14278557 GAACTAGACC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.21, G:0.05, T:0.47
Consensus pattern (19 bp):
CTTCTTTAACTAGAATTTC
Found at i:14280534 original size:12 final size:12
Alignment explanation
Indices: 14280489--14280601 Score: 56
Period size: 12 Copynumber: 9.4 Consensus size: 12
14280479 TGGTGGGTGT
14280489 GTTGGTGGCTTG
1 GTTGGTGGCTTG
*
14280501 GTCGG-GGAC-TG
1 GTTGGTGG-CTTG
*
14280512 AGTTGGAGGCTTG
1 -GTTGGTGGCTTG
*
14280525 GTTGGTGGCTTA
1 GTTGGTGGCTTG
*
14280537 GTTGGGGGC-TG
1 GTTGGTGGCTTG
*
14280548 AGTTGGTGGTTTAG
1 -GTTGGTGGCTT-G
* *
14280562 G-CGG-GGGTTG
1 GTTGGTGGCTTG
* *
14280572 AGTTGGAGGTTTG
1 -GTTGGTGGCTTG
*
14280585 GTTGGTGGCTTA
1 GTTGGTGGCTTG
14280597 GTTGG
1 GTTGG
14280602 AGGTTGAACT
Statistics
Matches: 76, Mismatches: 15, Indels: 20
0.68 0.14 0.18
Matches are distributed among these distances:
10 1 0.01
11 10 0.13
12 53 0.70
13 11 0.14
14 1 0.01
ACGTcount: A:0.08, C:0.07, G:0.50, T:0.35
Consensus pattern (12 bp):
GTTGGTGGCTTG
Found at i:14280539 original size:24 final size:24
Alignment explanation
Indices: 14280489--14280561 Score: 69
Period size: 24 Copynumber: 3.0 Consensus size: 24
14280479 TGGTGGGTGT
* * *
14280489 GTTGGTGGCTTGGTCGG-GGACTGA
1 GTTGGAGGCTTGGTTGGTGG-CTTA
14280513 GTTGGAGGCTTGGTTGGTGGCTTA
1 GTTGGAGGCTTGGTTGGTGGCTTA
* *
14280537 GTTGGGGGC-TGAGTTGGTGGTTTA
1 GTTGGAGGCTTG-GTTGGTGGCTTA
14280561 G
1 G
14280562 GCGGGGGTTG
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.05
24 38 0.90
25 2 0.05
ACGTcount: A:0.08, C:0.08, G:0.49, T:0.34
Consensus pattern (24 bp):
GTTGGAGGCTTGGTTGGTGGCTTA
Found at i:14280567 original size:24 final size:24
Alignment explanation
Indices: 14280525--14280583 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
14280515 TGGAGGCTTG
* **
14280525 GTTGGTGGCTTAGTTGGGGGCTGA
1 GTTGGTGGTTTAGGCGGGGGCTGA
*
14280549 GTTGGTGGTTTAGGCGGGGGTTGA
1 GTTGGTGGTTTAGGCGGGGGCTGA
*
14280573 GTTGGAGGTTT
1 GTTGGTGGTTT
14280584 GGTTGGTGGC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.08, C:0.05, G:0.51, T:0.36
Consensus pattern (24 bp):
GTTGGTGGTTTAGGCGGGGGCTGA
Found at i:14280567 original size:60 final size:60
Alignment explanation
Indices: 14280489--14280652 Score: 181
Period size: 60 Copynumber: 2.7 Consensus size: 60
14280479 TGGTGGGTGT
14280489 GTTGGTGGCTTGGTCGGGGACTGAGTTGGAGGCTTGGTTGGTGGCTTAGTTGGGGGCTGA
1 GTTGGTGGCTTGGTCGGGGACTGAGTTGGAGGCTTGGTTGGTGGCTTAGTTGGGGGCTGA
* ** * * *
14280549 GTTGGTGGTTTAGG-CGGGGGTTGAGTTGGAGGTTTGGTTGGTGGCTTAGTTGGAGGTTGA
1 GTTGGTGGCTT-GGTCGGGGACTGAGTTGGAGGCTTGGTTGGTGGCTTAGTTGGGGGCTGA
** * * *
14280609 ACTGGTGGCTTGG--GTGGAGCAGAAGTTGGGGGCTTGGTTGGTGG
1 GTTGGTGGCTTGGTCGGGGA-CTG-AGTTGGAGGCTTGGTTGGTGG
14280653 TTGCACTGGC
Statistics
Matches: 86, Mismatches: 15, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
58 3 0.03
59 3 0.03
60 78 0.91
61 2 0.02
ACGTcount: A:0.10, C:0.07, G:0.51, T:0.32
Consensus pattern (60 bp):
GTTGGTGGCTTGGTCGGGGACTGAGTTGGAGGCTTGGTTGGTGGCTTAGTTGGGGGCTGA
Found at i:14280626 original size:24 final size:24
Alignment explanation
Indices: 14280587--14280685 Score: 65
Period size: 24 Copynumber: 4.1 Consensus size: 24
14280577 GAGGTTTGGT
* *
14280587 TGGTGGCTTAGTTGGAGGTTGAAC
1 TGGTGGCTTGGGTGGAGGTTGAAC
** *
14280611 TGGTGGCTTGGGTGGA-GCAGAAGT
1 TGGTGGCTTGGGTGGAGGTTGAA-C
* * * *
14280635 TGGGGGCTTGGTTGGTGGTTGCAC
1 TGGTGGCTTGGGTGGAGGTTGAAC
* * * *
14280659 TGGCGCCTTGGGTGGTGGATGAAC
1 TGGTGGCTTGGGTGGAGGTTGAAC
14280683 TGG
1 TGG
14280686 AGGAGGAGTG
Statistics
Matches: 56, Mismatches: 17, Indels: 4
0.73 0.22 0.05
Matches are distributed among these distances:
23 4 0.07
24 49 0.88
25 3 0.05
ACGTcount: A:0.12, C:0.11, G:0.47, T:0.29
Consensus pattern (24 bp):
TGGTGGCTTGGGTGGAGGTTGAAC
Found at i:14280731 original size:6 final size:6
Alignment explanation
Indices: 14280720--14280745 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
14280710 AGTGGGTGGA
14280720 TGAGGG TGAGGG TGAGGG TGAGGG TG
1 TGAGGG TGAGGG TGAGGG TGAGGG TG
14280746 GTGGTGATGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.65, T:0.19
Consensus pattern (6 bp):
TGAGGG
Found at i:14280751 original size:12 final size:12
Alignment explanation
Indices: 14280724--14280761 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
14280714 GGTGGATGAG
14280724 GGTGAGGGTGAG-
1 GGTGAGGGTG-GT
14280736 GGTGAGGGTGGT
1 GGTGAGGGTGGT
*
14280748 GGTGATGGTGGT
1 GGTGAGGGTGGT
14280760 GG
1 GG
14280762 GTTGGTGGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 1 0.04
12 23 0.96
ACGTcount: A:0.11, C:0.00, G:0.66, T:0.24
Consensus pattern (12 bp):
GGTGAGGGTGGT
Found at i:14287999 original size:21 final size:21
Alignment explanation
Indices: 14287974--14288024 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
14287964 AGCGGTGACA
*
14287974 GTGAGATTAGTTACTGTAGCG
1 GTGAGATTAGGTACTGTAGCG
*
14287995 GTGAGATTGGGTACTGTAGCG
1 GTGAGATTAGGTACTGTAGCG
14288016 GTGAGATTA
1 GTGAGATTA
14288025 AAAACAATGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.24, C:0.08, G:0.37, T:0.31
Consensus pattern (21 bp):
GTGAGATTAGGTACTGTAGCG
Found at i:14288339 original size:22 final size:22
Alignment explanation
Indices: 14288288--14288339 Score: 52
Period size: 22 Copynumber: 2.3 Consensus size: 22
14288278 TTTTATAGTT
*
14288288 ATAATTAAATATTTTTTATAACA
1 ATAA-TAAATATTATTTATAACA
* *
14288311 ATGATAAATATTATTT-TCACAA
1 ATAATAAATATTATTTATAAC-A
14288333 ATAATAA
1 ATAATAA
14288340 CATTATACTT
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.12
22 18 0.75
23 3 0.12
ACGTcount: A:0.50, C:0.06, G:0.02, T:0.42
Consensus pattern (22 bp):
ATAATAAATATTATTTATAACA
Found at i:14288978 original size:30 final size:30
Alignment explanation
Indices: 14288937--14289182 Score: 417
Period size: 30 Copynumber: 8.2 Consensus size: 30
14288927 GAATAAACCG
*
14288937 AATACAGTACATATATTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
14288967 AATACACTACATATA-TTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
14288996 AATACACTACATATATTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
14289026 AATACACTACATATATTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
*
14289056 AAAACACTACATATA-TTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
14289085 AATACACTACATATATATTTTTTTATTTTTAA
1 AATACACTAC--ATATATTTTTTTATTTTTAA
*
14289117 AATACACTACATATATTTCTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
*
14289147 AATACATTACATATA-TTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAA
14289176 AATACAC
1 AATACAC
14289183 AAATACAATG
Statistics
Matches: 205, Mismatches: 7, Indels: 9
0.93 0.03 0.04
Matches are distributed among these distances:
29 71 0.35
30 105 0.51
31 5 0.02
32 24 0.12
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (30 bp):
AATACACTACATATATTTTTTTATTTTTAA
Found at i:14289029 original size:59 final size:60
Alignment explanation
Indices: 14288937--14289182 Score: 417
Period size: 59 Copynumber: 4.1 Consensus size: 60
14288927 GAATAAACCG
*
14288937 AATACAGTACATATATTTTTTTATTTTTAAAATACACTACATATA-TTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTTATTTTTAA
14288996 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTTATTTTTAA
*
14289056 AAAACACTACATATA-TTTTTTATTTTTAAAATACACTACATATATATTTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTAC--ATATATTTTTTTATTTTTAA
* *
14289117 AATACACTACATATATTTCTTTATTTTTAAAATACATTACATATA-TTTTTTATTTTTAA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTTATTTTTAA
14289176 AATACAC
1 AATACAC
14289183 AAATACAATG
Statistics
Matches: 178, Mismatches: 5, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
59 89 0.50
60 33 0.19
61 34 0.19
62 22 0.12
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (60 bp):
AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTTATTTTTAA
Found at i:14289125 original size:91 final size:89
Alignment explanation
Indices: 14288937--14289182 Score: 438
Period size: 91 Copynumber: 2.7 Consensus size: 89
14288927 GAATAAACCG
*
14288937 AATACAGTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
14289002 CTACATATATTTTTTTATTTTTAA
66 CTACATATATTTTTTTATTTTTAA
*
14289026 AATACACTACATATATTTTTTTATTTTTAAAAAACACTACATATATTTTTTATTTTTAAAATACA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
14289091 CTACATATATATTTTTTTATTTTTAA
66 CTAC--ATATATTTTTTTATTTTTAA
* *
14289117 AATACACTACATATATTTCTTTATTTTTAAAATACATTACATATATTTTTTATTTTTAAAATACA
1 AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
14289182 C
66 C
14289183 AAATACAATG
Statistics
Matches: 150, Mismatches: 5, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
89 67 0.45
91 83 0.55
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.51
Consensus pattern (89 bp):
AATACACTACATATATTTTTTTATTTTTAAAATACACTACATATATTTTTTATTTTTAAAATACA
CTACATATATTTTTTTATTTTTAA
Found at i:14289275 original size:43 final size:43
Alignment explanation
Indices: 14289228--14289309 Score: 155
Period size: 43 Copynumber: 1.9 Consensus size: 43
14289218 TTTCCATTGA
*
14289228 TTCCCCTCTTCCACCGTGCCTTCCTCCCATTTCCCATTCTCAT
1 TTCCCCTCTTCCACCGTGCCCTCCTCCCATTTCCCATTCTCAT
14289271 TTCCCCTCTTCCACCGTGCCCTCCTCCCATTTCCCATTC
1 TTCCCCTCTTCCACCGTGCCCTCCTCCCATTTCCCATTC
14289310 CTATTCCCAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.09, C:0.51, G:0.05, T:0.35
Consensus pattern (43 bp):
TTCCCCTCTTCCACCGTGCCCTCCTCCCATTTCCCATTCTCAT
Found at i:14289302 original size:30 final size:30
Alignment explanation
Indices: 14289268--14289398 Score: 106
Period size: 30 Copynumber: 4.3 Consensus size: 30
14289258 TTCCCATTCT
14289268 CATTTCCCCTCTTCCACCGTGCCCTCCTCC
1 CATTTCCCCTCTTCCACCGTGCCCTCCTCC
* * * * *
14289298 CATTTCCCATTCCTATTC-CCATTCCCAT--TTC
1 CATTTCCC-CT-CT-TCCACCGTGCCC-TCCTCC
*
14289329 CATTTCCCCTCTTCCACCGTGCCCTCCTCT
1 CATTTCCCCTCTTCCACCGTGCCCTCCTCC
** *
14289359 CATTTCCCCTCTTCCGTCGATTCTCCTCCTCC
1 CATTTCCCCTCTTCCACCG-TGC-CCTCCTCC
14289391 CATTTCCC
1 CATTTCCC
14289399 ATTCCTATTT
Statistics
Matches: 77, Mismatches: 15, Indels: 16
0.71 0.14 0.15
Matches are distributed among these distances:
28 3 0.04
29 8 0.10
30 27 0.35
31 13 0.17
32 23 0.30
33 3 0.04
ACGTcount: A:0.09, C:0.50, G:0.05, T:0.36
Consensus pattern (30 bp):
CATTTCCCCTCTTCCACCGTGCCCTCCTCC
Found at i:14295836 original size:46 final size:46
Alignment explanation
Indices: 14295769--14295905 Score: 238
Period size: 46 Copynumber: 3.0 Consensus size: 46
14295759 ACATTGCTAT
*
14295769 AACTCAGTATGGTTTTCTTCACGGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
* *
14295815 AACTCGGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
*
14295861 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTTCA
1 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCA
14295906 TACTTTTCCA
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.28, C:0.26, G:0.11, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACTTTTCAC
Found at i:14297179 original size:16 final size:17
Alignment explanation
Indices: 14297133--14297180 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
14297123 AAATTCTTTT
14297133 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
*
14297150 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
14297167 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
14297181 TTATAAAATC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:14304319 original size:29 final size:29
Alignment explanation
Indices: 14304285--14304342 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
14304275 CGATATTCCC
*
14304285 TACTCACCATAGCTATATTATTATTCGAT
1 TACTCACCATAGCTATACTATTATTCGAT
14304314 TACTCACCATAGCTATACTATTATTCGAT
1 TACTCACCATAGCTATACTATTATTCGAT
14304343 AGGTGCGCTT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (29 bp):
TACTCACCATAGCTATACTATTATTCGAT
Found at i:14313836 original size:4 final size:4
Alignment explanation
Indices: 14313820--14313850 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
14313810 TCTGGGAGGG
*
14313820 TTCT TTCT CTCT TTCT TTCT TTCT TTCT TTC
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TTC
14313851 AAGTTCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.00, C:0.29, G:0.00, T:0.71
Consensus pattern (4 bp):
TTCT
Found at i:14323286 original size:31 final size:29
Alignment explanation
Indices: 14323251--14323310 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
14323241 GTGATCACTT
14323251 CGTAACACAATAATAACATAAGTGACTAAAA
1 CGTAACA-AATAA-AACATAAGTGACTAAAA
** *
14323282 CGTAACATTTCAAACATAAGTGACTAAAA
1 CGTAACAAATAAAACATAAGTGACTAAAA
14323311 TATAACCTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
29 17 0.65
30 2 0.08
31 7 0.27
ACGTcount: A:0.52, C:0.17, G:0.10, T:0.22
Consensus pattern (29 bp):
CGTAACAAATAAAACATAAGTGACTAAAA
Found at i:14326454 original size:41 final size:41
Alignment explanation
Indices: 14326397--14326547 Score: 198
Period size: 41 Copynumber: 3.7 Consensus size: 41
14326387 TTTTGTAAGT
*
14326397 TCAGGCTTTATGCCTAGCAGACTTTATGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
*
14326438 TCAGGCTTTATGCCTAGCAGGC--TCTGCCGGTGAATTATA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
** * * * *
14326477 TCAAACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTA
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
* *
14326518 TCGGGCTTTGTGCCTAGCAGGCTTTATGCC
1 TCAGGCTTTATGCCTAGCAGGCTTTATGCC
14326548 AGTGTTTTAT
Statistics
Matches: 94, Mismatches: 14, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
39 35 0.37
41 59 0.63
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.33
Consensus pattern (41 bp):
TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
Found at i:14327347 original size:24 final size:24
Alignment explanation
Indices: 14327315--14327364 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 24
14327305 TTTAAGCCTA
*
14327315 TTTGATGTATATA-TACTGTTAAAT
1 TTTGATGTA-AAAGTACTGTTAAAT
* *
14327339 TTTGGTGTAAAAGTGCTGTTAAAT
1 TTTGATGTAAAAGTACTGTTAAAT
14327363 TT
1 TT
14327365 GGTATGTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 2 0.09
24 20 0.91
ACGTcount: A:0.30, C:0.04, G:0.18, T:0.48
Consensus pattern (24 bp):
TTTGATGTAAAAGTACTGTTAAAT
Found at i:14327396 original size:69 final size:68
Alignment explanation
Indices: 14327314--14327682 Score: 479
Period size: 69 Copynumber: 5.2 Consensus size: 68
14327304 ATTTAAGCCT
*
14327314 ATTTGATGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
1 ATTTGTTGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
14327379 GCTC
66 GC-C
* * * *
14327383 ATTTGTTGTATATATGCTGTATATATGCTGATAAATTTTGGTGTAAAAATGCTGCTCAATTTGGT
1 ATTTGTTG----TA-----TATATA--CTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGT
14327448 ATGTATATGCTGCCC
55 ATGTATATGCTG-CC
*
14327463 ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
1 ATTTGTTGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
14327528 GCC
66 GCC
* * *
14327531 TATTTGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGCATATGC
1 -ATTTGTTGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGC
14327596 TGCC
65 TGCC
** *
14327600 TATTTACTGTATATATACTGTTAAA-TTTGGTGTAAAAGTGCTATTAAATTTGGTATGTATATGC
1 -ATTTGTTGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGC
14327664 TGCCC
65 TG-CC
14327669 ATTTGTTGTATATA
1 ATTTGTTGTATATA
14327683 AGAGCTGTCT
Statistics
Matches: 268, Mismatches: 18, Indels: 29
0.85 0.06 0.09
Matches are distributed among these distances:
68 53 0.20
69 144 0.54
71 5 0.02
73 2 0.01
76 2 0.01
78 6 0.02
80 55 0.21
81 1 0.00
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (68 bp):
ATTTGTTGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
GCC
Found at i:14327434 original size:24 final size:23
Alignment explanation
Indices: 14327400--14327665 Score: 152
Period size: 23 Copynumber: 11.6 Consensus size: 23
14327390 GTATATATGC
*
14327400 TGTATATATGCTGATAAATTTTGG
1 TGTATATATGCTGTTAAA-TTTGG
* * * *
14327424 TGTAAAAATGCTGCTCAATTTGG
1 TGTATATATGCTGTTAAATTTGG
* * *** *
14327447 TATGTATATGCTG-CCCATTTGT
1 TGTATATATGCTGTTAAATTTGG
14327469 TGTATATATGCTGTTAAATTTTGG
1 TGTATATATGCTGTTAAA-TTTGG
*
14327493 TGTA-AAAGTGCTGTTAAATTTGG
1 TGTATATA-TGCTGTTAAATTTGG
* * * *
14327516 TATGTATATGCTGCCT--ATTTGC
1 TGTATATATGCTG-TTAAATTTGG
14327538 TGTATATATGCTGTTAAATTTTGG
1 TGTATATATGCTGTTAAA-TTTGG
*
14327562 TGTA-AAAGTGCTGTTAAATTTGG
1 TGTATATA-TGCTGTTAAATTTGG
* ** * **
14327585 TATGCATATGCTGCCT--ATTTAC
1 TGTATATATGCTG-TTAAATTTGG
*
14327607 TGTATATATACTGTTAAATTTGG
1 TGTATATATGCTGTTAAATTTGG
* *
14327630 TGTA-AAAGTGCTATTAAATTTGG
1 TGTATATA-TGCTGTTAAATTTGG
* *
14327653 TATGTATATGCTG
1 TGTATATATGCTG
14327666 CCCATTTGTT
Statistics
Matches: 179, Mismatches: 48, Indels: 31
0.69 0.19 0.12
Matches are distributed among these distances:
21 2 0.01
22 48 0.27
23 71 0.40
24 58 0.32
ACGTcount: A:0.27, C:0.09, G:0.21, T:0.44
Consensus pattern (23 bp):
TGTATATATGCTGTTAAATTTGG
Found at i:14327483 original size:149 final size:148
Alignment explanation
Indices: 14327314--14327682 Score: 546
Period size: 138 Copynumber: 2.6 Consensus size: 148
14327304 ATTTAAGCCT
14327314 ATTTGATGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
1 ATTTGATGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
*
14327379 GCTCATTTGTTGTATATATGCTGTATATATGCTGATAAATTTTGGTGTAAAAATGCTGCTCAATT
66 GC-CATTTGTTGTATATATGCTGTATATATGCTGATAAATTTTGGTGTAAAAATGCTGCTAAATT
*
14327444 TGGTATGTATATGCTGCCC
130 TGGTATGCATATGCTGCCC
* *
14327463 ATTTGTTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
1 ATTTGATGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
* * *
14327528 GCC--------TAT-T-TGCTGTATATATGCTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTT
66 GCCATTTGTTGTATATATGCTGTATATATGCTGATAAATTTTGGTGTAAAAATGCTGCTAAATTT
*
14327583 GGTATGCATATGCTGCCT
131 GGTATGCATATGCTGCCC
*
14327601 ATTT-ACTGTATATATACTGTTAAA-TTTGGTGTAAAAGTGCTATTAAATTTGGTATGTATATGC
1 ATTTGA-TGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGC
14327664 TGCCCATTTGTTGTATATA
65 TG-CCATTTGTTGTATATA
14327683 AGAGCTGTCT
Statistics
Matches: 197, Mismatches: 11, Indels: 25
0.85 0.05 0.11
Matches are distributed among these distances:
137 40 0.20
138 83 0.42
139 1 0.01
140 3 0.02
146 3 0.02
147 1 0.01
148 1 0.01
149 65 0.33
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (148 bp):
ATTTGATGTATATATACTGTTAAATTTTGGTGTAAAAGTGCTGTTAAATTTGGTATGTATATGCT
GCCATTTGTTGTATATATGCTGTATATATGCTGATAAATTTTGGTGTAAAAATGCTGCTAAATTT
GGTATGCATATGCTGCCC
Found at i:14330014 original size:46 final size:44
Alignment explanation
Indices: 14329997--14330219 Score: 192
Period size: 37 Copynumber: 5.3 Consensus size: 44
14329987 GACAAGTGGA
* * * * *
14329997 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAA
1 AAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGAGAC
* *
14330042 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGAGAC
14330087 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 -AAGTGATAAGTGATAGC-TTAGCTACACTTATCTGATCAAGAGAC
*
14330133 AAAGTGATAA--G-T-G----GCTACACTTATCTGATCAAGAAAC
1 -AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
*
14330170 AAAGTGAT-AG-G-T-G----GCTACACTTATCTGATC-AGGGAC
1 -AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
14330206 AAGTGATAAGTGAT
1 AAGTGATAAGTGAT
14330220 CATACGTAAG
Statistics
Matches: 164, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
35 7 0.04
36 7 0.04
37 52 0.32
38 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
45 42 0.26
46 50 0.30
47 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (44 bp):
AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
Found at i:14330015 original size:52 final size:47
Alignment explanation
Indices: 14329930--14330145 Score: 244
Period size: 46 Copynumber: 4.6 Consensus size: 47
14329920 TTTGAGTACT
* * * *
14329930 TCTGATCAAGTGA-TAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * * *
14329976 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGAGAC-A----AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * *
14330028 TCTGATCAAGTG--AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
14330073 TCTGATCAAGAGAC-AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
14330119 TCTGATCAAGAGAC-AAAGTGATAAGTG
1 TCTGATCAAGAGACAAAAGTGATAAGTG
14330146 GCTACACTTA
Statistics
Matches: 151, Mismatches: 11, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
45 42 0.28
46 69 0.46
49 1 0.01
52 39 0.26
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (47 bp):
TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
Found at i:14330038 original size:45 final size:46
Alignment explanation
Indices: 14329996--14330145 Score: 248
Period size: 46 Copynumber: 3.3 Consensus size: 46
14329986 TGACAAGTGG
* *
14329996 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA-
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
14330041 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
** *
14330087 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
14330133 AAAGTGATAAGTG
1 AAAGTGATAAGTG
14330146 GCTACACTTA
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 43 0.43
46 56 0.57
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
Found at i:14331534 original size:49 final size:49
Alignment explanation
Indices: 14331473--14331665 Score: 323
Period size: 49 Copynumber: 3.9 Consensus size: 49
14331463 ATGTGAACAT
14331473 GTGATTATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGA-TATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
14331523 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* *
14331572 GTGATATGTGATTTCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAT
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
* * * *
14331621 GTGATTTGTGATTACGTGTAAGACCATAGTTGGACTATGGCATCG
1 GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCG
14331666 AGAAAACGAA
Statistics
Matches: 137, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
49 133 0.97
50 4 0.03
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.31
Consensus pattern (49 bp):
GTGATATGTGATTCCGTGTAAGACCATAGCTGGGCTATGGCATCGGTAA
Found at i:14334874 original size:46 final size:44
Alignment explanation
Indices: 14334857--14335079 Score: 192
Period size: 37 Copynumber: 5.3 Consensus size: 44
14334847 GACAAGTGGA
* * * * *
14334857 AAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGAA
1 AAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGAGAC
* *
14334902 AAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAGTGATAAGTGATAGCTT-AGCTACACTTATCTGATCAAGAGAC
14334947 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 -AAGTGATAAGTGATAGC-TTAGCTACACTTATCTGATCAAGAGAC
*
14334993 AAAGTGATAA--G-T-G----GCTACACTTATCTGATCAAGAAAC
1 -AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
*
14335030 AAAGTGAT-AG-G-T-G----GCTACACTTATCTGATC-AGGGAC
1 -AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
14335066 AAGTGATAAGTGAT
1 AAGTGATAAGTGAT
14335080 CATACGTAAG
Statistics
Matches: 164, Mismatches: 8, Indels: 19
0.86 0.04 0.10
Matches are distributed among these distances:
35 7 0.04
36 7 0.04
37 52 0.32
38 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
45 42 0.26
46 50 0.30
47 2 0.01
ACGTcount: A:0.36, C:0.14, G:0.22, T:0.28
Consensus pattern (44 bp):
AAGTGATAAGTGATAGCTTAGCTACACTTATCTGATCAAGAGAC
Found at i:14334875 original size:52 final size:47
Alignment explanation
Indices: 14334790--14335005 Score: 244
Period size: 46 Copynumber: 4.6 Consensus size: 47
14334780 TTTGAGTACT
* * * *
14334790 TCTGATCAAGTGA-TAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * * *
14334836 TCTGATCAAGTGACAAGTGGAAAGTGATAAGTAATAGCTTCGGCTATACTTA
1 TCTGATCAAGAGAC-A----AAAGTGATAAGTGATAGCTTCAGCTACACTTA
* * *
14334888 TCTGATCAAGTG--AAAAGTGATAAGTGATAGCTTCGGCTATACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
*
14334933 TCTGATCAAGAGAC-AAAGTGATAAGTGATAGCTTTAGCTACACTTA
1 TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
14334979 TCTGATCAAGAGAC-AAAGTGATAAGTG
1 TCTGATCAAGAGACAAAAGTGATAAGTG
14335006 GCTACACTTA
Statistics
Matches: 151, Mismatches: 11, Indels: 16
0.85 0.06 0.09
Matches are distributed among these distances:
45 42 0.28
46 69 0.46
49 1 0.01
52 39 0.26
ACGTcount: A:0.35, C:0.13, G:0.22, T:0.29
Consensus pattern (47 bp):
TCTGATCAAGAGACAAAAGTGATAAGTGATAGCTTCAGCTACACTTA
Found at i:14334898 original size:45 final size:46
Alignment explanation
Indices: 14334856--14335005 Score: 248
Period size: 46 Copynumber: 3.3 Consensus size: 46
14334846 TGACAAGTGG
* *
14334856 AAAGTGATAAGTAATAGCTTCGGCTATACTTATCTGATCAAGTGA-
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
14334901 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
** *
14334947 AAAGTGATAAGTGATAGCTTTAGCTACACTTATCTGATCAAGAGAC
1 AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
14334993 AAAGTGATAAGTG
1 AAAGTGATAAGTG
14335006 GCTACACTTA
Statistics
Matches: 99, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
45 43 0.43
46 56 0.57
ACGTcount: A:0.37, C:0.13, G:0.21, T:0.29
Consensus pattern (46 bp):
AAAGTGATAAGTGATAGCTTCGGCTATACTTATCTGATCAAGAGAC
Found at i:14337270 original size:25 final size:25
Alignment explanation
Indices: 14337242--14337353 Score: 142
Period size: 25 Copynumber: 4.6 Consensus size: 25
14337232 CTTTAACGCT
*
14337242 CTCTCTGATTATTAGCACATCAGTG
1 CTCTCTGATTATTAGCACGTCAGTG
*
14337267 CTCTCTGATTATTAGCACGTTAGTG
1 CTCTCTGATTATTAGCACGTCAGTG
* *
14337292 CTCTCTGATTACTAGCACGTCTGTG
1 CTCTCTGATTATTAGCACGTCAGTG
*
14337317 CTCTCTG--TA-TAGCACTTCAGTG
1 CTCTCTGATTATTAGCACGTCAGTG
14337339 CTCTCTG-TTCATTAG
1 CTCTCTGATT-ATTAG
14337354 TGCATAACAA
Statistics
Matches: 77, Mismatches: 7, Indels: 6
0.86 0.08 0.07
Matches are distributed among these distances:
22 18 0.23
23 3 0.04
24 1 0.01
25 55 0.71
ACGTcount: A:0.19, C:0.25, G:0.18, T:0.38
Consensus pattern (25 bp):
CTCTCTGATTATTAGCACGTCAGTG
Found at i:14347032 original size:326 final size:326
Alignment explanation
Indices: 14346439--14347096 Score: 1156
Period size: 326 Copynumber: 2.0 Consensus size: 326
14346429 ATGTAGTAGT
*
14346439 CATACCCAATCATTTTAACAACCCATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCGCTAAG
1 CATACCCAATCATTTTAACAACCCATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCACTAAG
* * *
14346504 AAATTTAGGCTTTGGTGATCGGTCTTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
66 AAATTCAGGCTTTAGTGATCGGTCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
* *
14346569 CTTGACTGCTATGAGAATCGTGAACATTTCCTTATCGTAGATGAAAAGTGCCTCATGTTTCACTC
131 CTTGAATGCCATGAGAATCGTGAACATTTCCTTATCGTAGATGAAAAGTGCCTCATGTTTCACTC
* *
14346634 CTAGCCCTTTGCTGAAAAATGCCACGGGTCTTCTTTTCTGGTGTAACACAACCCCGACCCCTTGA
196 CTAGCCCTTTGCTGAAAAATGCCACGAGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTGA
14346699 CCACATGCATCAGTGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCTTG
261 CCACATGCATCAGTGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCTTG
14346764 G
326 G
*
14346765 CATACCCAATCATTTTAACAACCTATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCACTAAG
1 CATACCCAATCATTTTAACAACCCATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCACTAAG
* *
14346830 AACTTCAGGCTTTAGTGATCGGTCCTGATTTGAAACCTCTTTCCAACCAAGTACGTGTGCCATTT
66 AAATTCAGGCTTTAGTGATCGGTCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
* *
14346895 CTTGAATGCCATGAGAA-CTGTGAACATTTCCTTATCGTAGATGTAAAGTGCCTTATGTTTCACT
131 CTTGAATGCCATGAGAATC-GTGAACATTTCCTTATCGTAGATGAAAAGTGCCTCATGTTTCACT
14346959 CCTAGCCCTTTGCTGAAAAATGCCACGAGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTG
195 CCTAGCCCTTTGCTGAAAAATGCCACGAGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTG
* * *
14347024 ACCACATGCGTCAGTGTCGATGTAAAACTCTTTATTAAAATTGGGAAGACATAGTACCGGTGCTT
260 ACCACATGCATCAGTGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCTT
14347089 GG
325 GG
14347091 CATACC
1 CATACC
14347097 ACTTGCTTTA
Statistics
Matches: 315, Mismatches: 16, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
325 1 0.00
326 314 1.00
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (326 bp):
CATACCCAATCATTTTAACAACCCATTATTGTTGGAATGGGGTGATAGCTTGCCGATTCACTAAG
AAATTCAGGCTTTAGTGATCGGTCCTGATTTGAAACCTCTTCCCAACCAAGTACGTGTGCCATTT
CTTGAATGCCATGAGAATCGTGAACATTTCCTTATCGTAGATGAAAAGTGCCTCATGTTTCACTC
CTAGCCCTTTGCTGAAAAATGCCACGAGTCTTCCTTTCTGGTGTAACACAACCCCGACCCCTTGA
CCACATGCATCAGTGTCGATGCAAAACTCTTCATTAAAATTGGGAAGACATAGTACCGGTGCTTG
G
Found at i:14347825 original size:84 final size:84
Alignment explanation
Indices: 14347684--14347949 Score: 435
Period size: 84 Copynumber: 3.2 Consensus size: 84
14347674 GGAGAAAAAG
14347684 AGAGCTTGTCCCAGGTCATCCAACAATT-TTTCTATGATAGGTATGGGGAACCTATCTGTAACAC
1 AGAGCTTGTCCCAGGTCATCCAACAATTCTTT-TATGATAGGTATGGGGAACCTATCTGTAACAC
14347748 CCCTATCTCGTATTCGTCAC
65 CCCTATCTCGTATTCGTCAC
* * *
14347768 AGAGCTTGTCCCAGGTCATCCAACAATTCTTTTATAATAGGTATGGGGAATCTATCTGTAATACC
1 AGAGCTTGTCCCAGGTCATCCAACAATTCTTTTATGATAGGTATGGGGAACCTATCTGTAACACC
14347833 CCTATCTCGTATTCGTCAC
66 CCTATCTCGTATTCGTCAC
* * *
14347852 CGAGCTTGTCCCAGGTCATCCAACAATTCTTCTATGATAGGTATGGGGAACCTATCTGTAGCACC
1 AGAGCTTGTCCCAGGTCATCCAACAATTCTTTTATGATAGGTATGGGGAACCTATCTGTAACACC
* *
14347917 CTTATCTCGTATTCATCAC
66 CCTATCTCGTATTCGTCAC
*
14347936 CGAGCTTGTCCCAG
1 AGAGCTTGTCCCAG
14347950 AACATTACCG
Statistics
Matches: 170, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
84 167 0.98
85 3 0.02
ACGTcount: A:0.24, C:0.26, G:0.18, T:0.31
Consensus pattern (84 bp):
AGAGCTTGTCCCAGGTCATCCAACAATTCTTTTATGATAGGTATGGGGAACCTATCTGTAACACC
CCTATCTCGTATTCGTCAC
Found at i:14348930 original size:45 final size:45
Alignment explanation
Indices: 14348843--14348965 Score: 223
Period size: 44 Copynumber: 2.8 Consensus size: 45
14348833 AGAGTTAGAC
*
14348843 TTTAGTTTTATTTTTATTGGGTT-GGTAATTGGGTAGACTTTAGT
1 TTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTAGACTTTAGT
14348887 TTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTAGACTTTAGT
1 TTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTAGACTTTAGT
14348932 TTTAGTTTTAGTTTT-TTGGGTTGGGTAATTGGGT
1 TTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGT
14348966 TGGGTTGGAT
Statistics
Matches: 77, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
44 41 0.53
45 36 0.47
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.54
Consensus pattern (45 bp):
TTTAGTTTTAGTTTTATTGGGTTGGGTAATTGGGTAGACTTTAGT
Found at i:14348997 original size:17 final size:17
Alignment explanation
Indices: 14348975--14349009 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
14348965 TTGGGTTGGA
14348975 TAATTTTATTTATTAAT
1 TAATTTTATTTATTAAT
14348992 TAATTTTATTTATTAAT
1 TAATTTTATTTATTAAT
14349009 T
1 T
14349010 TTTTCGGTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TAATTTTATTTATTAAT
Found at i:14353179 original size:51 final size:51
Alignment explanation
Indices: 14353111--14353212 Score: 168
Period size: 51 Copynumber: 2.0 Consensus size: 51
14353101 ATCACATTTA
14353111 TCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTATCACTTG
* * * *
14353162 TCACTTGTCATTGATCAGATAAGTGTAGCTGAAGCTACTACTTATCACTTG
1 TCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTATCACTTG
14353213 CTACTGATCA
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (51 bp):
TCACTTGTCACTGATCAGATAAGAGTAGCTAAAGCTACCACTTATCACTTG
Found at i:14354803 original size:17 final size:17
Alignment explanation
Indices: 14354783--14354821 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
14354773 GCCATTTTTG
14354783 CATTTAAGCTATTTAAT
1 CATTTAAGCTATTTAAT
14354800 CATTTAAGCTATTTAAT
1 CATTTAAGCTATTTAAT
14354817 CATTT
1 CATTT
14354822 CCCATAATTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.33, C:0.13, G:0.05, T:0.49
Consensus pattern (17 bp):
CATTTAAGCTATTTAAT
Found at i:14356658 original size:103 final size:103
Alignment explanation
Indices: 14356481--14356743 Score: 379
Period size: 103 Copynumber: 2.6 Consensus size: 103
14356471 AACCGTTGTT
* * ** * ** *
14356481 GGTGGATTCCGCACTTAGC-ACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCTTGGGGG
1 GGTGGAATCAGCACTTAGCAACCACCAATGGGTCAGGGAATCAGCACTTAGCAACCCCTCGGGGG
* * *
14356545 AATCAGCACTTAGCAACCCCC-TTCACATTTCAGATGC
66 AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
14356582 GGTGGAATCAGCACTTAGCAACCACCAAATGGGTCAGGGAATCAGCACTTAGCAACCCCTCGGGG
1 GGTGGAATCAGCACTTAGCAACCACC-AATGGGTCAGGGAATCAGCACTTAGCAACCCCTCGGGG
14356647 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
65 GAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
*
14356686 GGTGGAATCAGCACTTAGCAACCACCAATAGGT-AGGGGAATCAGCACTTAGCAACCCC
1 GGTGGAATCAGCACTTAGCAACCACCAATGGGTCA-GGGAATCAGCACTTAGCAACCCC
14356744 CTTCCACATT
Statistics
Matches: 146, Mismatches: 12, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
101 17 0.12
102 7 0.05
103 83 0.57
104 39 0.27
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.18
Consensus pattern (103 bp):
GGTGGAATCAGCACTTAGCAACCACCAATGGGTCAGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACTTAGCAACCCCCTTTCACATTTAAAATAC
Found at i:14356707 original size:43 final size:42
Alignment explanation
Indices: 14356646--14356784 Score: 170
Period size: 43 Copynumber: 3.5 Consensus size: 42
14356636 ACCCCTCGGG
14356646 GGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCC-TTCACATTTAAAATACGGT
* **
14356689 GGAATCAGCACTTAGCAA-CCAC--CA-A--T-AGGTA-GG-
1 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGT
14356722 GGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCCTT-CACATTTAAAATACGGT
14356765 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
14356785 ACCAATGAAT
Statistics
Matches: 80, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
33 18 0.22
34 5 0.06
35 3 0.04
36 1 0.01
37 2 0.03
38 2 0.03
39 2 0.03
40 1 0.01
41 3 0.04
42 5 0.06
43 38 0.47
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (42 bp):
GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACGGT
Found at i:14356739 original size:76 final size:76
Alignment explanation
Indices: 14356644--14356808 Score: 296
Period size: 76 Copynumber: 2.2 Consensus size: 76
14356634 CAACCCCTCG
*
14356644 GGGGAATCAGCACTTAGCAACCCCCTTTCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
*
14356709 ACCAAT-AGGTA
66 ACCAATGA-ATA
14356720 GGGGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
14356785 ACCAATGAATA
66 ACCAATGAATA
14356796 GGGGAATCAGCAC
1 GGGGAATCAGCAC
14356809 ACAGCACCCC
Statistics
Matches: 86, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
76 85 0.99
77 1 0.01
ACGTcount: A:0.35, C:0.27, G:0.19, T:0.19
Consensus pattern (76 bp):
GGGGAATCAGCACTTAGCAACCCCCTTCCACATTTAAAATACGGTGGAATCAGCACTTAGCAACC
ACCAATGAATA
Found at i:14357180 original size:30 final size:29
Alignment explanation
Indices: 14357146--14357210 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
14357136 TAGTCCACCA
14357146 CCCAACTTTTTGAAAAATTACAATTTTGCC
1 CCCAAC-TTTTGAAAAATTACAATTTTGCC
* * * *
14357176 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGAAAAATTACAATTTTGCC
14357206 CCCAA
1 CCCAA
14357211 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 2 0.07
30 25 0.83
31 3 0.10
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (29 bp):
CCCAACTTTTGAAAAATTACAATTTTGCC
Found at i:14357184 original size:31 final size:30
Alignment explanation
Indices: 14357153--14357210 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14357143 CCACCCAACT
14357153 TTTTGAAAAATTACAATTTTGCCCCCAAAC
1 TTTTGAAAAATTACAATTTTGCCCCCAAAC
* * * *
14357183 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGAAAAATTACAATTTTGCCCCCAA
14357211 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (30 bp):
TTTTGAAAAATTACAATTTTGCCCCCAAAC
Found at i:14358368 original size:21 final size:21
Alignment explanation
Indices: 14358308--14358369 Score: 88
Period size: 21 Copynumber: 3.0 Consensus size: 21
14358298 GAGTTCTTGT
* * *
14358308 TGCATCACCCCCATATCATTC
1 TGCATGACTCCCATATCTTTC
*
14358329 TGCATGACTCCCATGTCTTTC
1 TGCATGACTCCCATATCTTTC
14358350 TGCATGACTCCCATATCTTT
1 TGCATGACTCCCATATCTTT
14358370 TTGTAATCTC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.19, C:0.35, G:0.10, T:0.35
Consensus pattern (21 bp):
TGCATGACTCCCATATCTTTC
Found at i:14360639 original size:21 final size:20
Alignment explanation
Indices: 14360599--14360649 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
14360589 AGCTTTCATA
*
14360599 AGCTTCAGTTAACTCATATG
1 AGCTTCAGTTAACCCATATG
*
14360619 AGCTTCAGATTAACCCTTATG
1 AGCTTCAG-TTAACCCATATG
* *
14360640 GGTTTCAGTT
1 AGCTTCAGTT
14360650 CAGCTCTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
20 10 0.38
21 16 0.62
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (20 bp):
AGCTTCAGTTAACCCATATG
Found at i:14360647 original size:41 final size:42
Alignment explanation
Indices: 14360602--14360691 Score: 103
Period size: 42 Copynumber: 2.2 Consensus size: 42
14360592 TTTCATAAGC
* * *
14360602 TTCAGTT-AACTCATATGAGCTTCAGA-TTAACCCTTATGGGT
1 TTCAGTTCAACTCATATAAGCTTCA-ATTTAACCCTAATGGCT
* * *
14360643 TTCAGTTCAGCTCTTTTAAGCTTCAATTTAACCCTAATGGCT
1 TTCAGTTCAACTCATATAAGCTTCAATTTAACCCTAATGGCT
14360685 TTCAGTT
1 TTCAGTT
14360692 TAGCTCTTCT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
41 8 0.20
42 33 0.80
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.40
Consensus pattern (42 bp):
TTCAGTTCAACTCATATAAGCTTCAATTTAACCCTAATGGCT
Found at i:14360667 original size:42 final size:42
Alignment explanation
Indices: 14360619--14360699 Score: 119
Period size: 42 Copynumber: 1.9 Consensus size: 42
14360609 AACTCATATG
* *
14360619 AGCTTCAGA-TTAACCCTTATGGGTTTCAGTTCAGCTCTTTTA
1 AGCTTCA-ATTTAACCCTAATGGCTTTCAGTTCAGCTCTTTTA
*
14360661 AGCTTCAATTTAACCCTAATGGCTTTCAGTTTAGCTCTT
1 AGCTTCAATTTAACCCTAATGGCTTTCAGTTCAGCTCTT
14360700 CTGTATAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
41 1 0.03
42 34 0.97
ACGTcount: A:0.22, C:0.22, G:0.15, T:0.41
Consensus pattern (42 bp):
AGCTTCAATTTAACCCTAATGGCTTTCAGTTCAGCTCTTTTA
Found at i:14360775 original size:18 final size:19
Alignment explanation
Indices: 14360752--14360789 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
14360742 AGTGTCCTTG
*
14360752 ATAAAGTAA-AATAAGGAA
1 ATAAAGTAACAAAAAGGAA
14360770 ATAAAGTAACAAAAAGGAA
1 ATAAAGTAACAAAAAGGAA
14360789 A
1 A
14360790 ATTTTGAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.68, C:0.03, G:0.16, T:0.13
Consensus pattern (19 bp):
ATAAAGTAACAAAAAGGAA
Found at i:14361209 original size:11 final size:11
Alignment explanation
Indices: 14361195--14361240 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
14361185 AGATAAATAT
14361195 TATTTTATTAA
1 TATTTTATTAA
*
14361206 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
14361219 TATTTTATTAT
1 TATTTTATTAA
14361230 TATTTTATTAA
1 TATTTTATTAA
14361241 GTATAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
11 16 0.55
12 6 0.21
13 7 0.24
ACGTcount: A:0.35, C:0.00, G:0.04, T:0.61
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:14365425 original size:42 final size:42
Alignment explanation
Indices: 14365364--14365519 Score: 152
Period size: 42 Copynumber: 3.7 Consensus size: 42
14365354 TTAACTCATA
* * * *
14365364 TGAGTTTCCGTTTCACCCTAATGGGTTTCTGTTCAACTCTTT
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCTGTTCAGCTCTTT
**
14365406 TGAGCTTCAGTTTAACCCTAATGGGTTTCCATTCAGCTCTTT
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCTGTTCAGCTCTTT
* ** * *
14365448 TGAGCTTCAATTTAACTTTTATGGGTTT-TCGTTCAGCTCTTA
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCT-GTTCAGCTCTTT
* * * * *
14365490 CGAGCTTCCGTTCAACCCTTATAGGTTTCT
1 TGAGCTTCAGTTTAACCCTAATGGGTTTCT
14365520 ATTTAGCACT
Statistics
Matches: 92, Mismatches: 20, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
42 91 0.99
43 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (42 bp):
TGAGCTTCAGTTTAACCCTAATGGGTTTCTGTTCAGCTCTTT
Found at i:14366339 original size:12 final size:12
Alignment explanation
Indices: 14366322--14366346 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14366312 GGTGTGCATT
14366322 CGGTTAACCGAC
1 CGGTTAACCGAC
14366334 CGGTTAACCGAC
1 CGGTTAACCGAC
14366346 C
1 C
14366347 CGAAATAGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:14366574 original size:17 final size:17
Alignment explanation
Indices: 14366552--14366614 Score: 54
Period size: 17 Copynumber: 3.5 Consensus size: 17
14366542 ATTAAATCAC
14366552 TACATAATTAAAAACAT
1 TACATAATTAAAAACAT
** * *
14366569 TACATAAGTCTTTGAATCAC
1 TACATAA---TTAAAAACAT
*
14366589 TACATAATTAAAAATAT
1 TACATAATTAAAAACAT
14366606 TACATAATT
1 TACATAATT
14366615 CTTAAAATTA
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
17 21 0.62
20 13 0.38
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (17 bp):
TACATAATTAAAAACAT
Found at i:14366592 original size:37 final size:37
Alignment explanation
Indices: 14366546--14366617 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
14366536 ACCAGAATTA
14366546 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
1 AATCACTACATAATTAAAAACATTACATAAGTCTTTG
* *
14366583 AATCACTACATAATTAAAAATATTACATAATTCTT
1 AATCACTACATAATTAAAAACATTACATAAGTCTT
14366618 AAAATTAACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (37 bp):
AATCACTACATAATTAAAAACATTACATAAGTCTTTG
Found at i:14366829 original size:39 final size:38
Alignment explanation
Indices: 14366746--14366858 Score: 181
Period size: 39 Copynumber: 2.9 Consensus size: 38
14366736 TACTTAGAAT
* *
14366746 TAGACTTTAGTTTTATTTTTATTGGGTTGGTAATTGGG
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGGTAATTGGA
*
14366784 CAGACTTTAGTTTTAGTTTTATTGGGTTGAGTAATTGGA
1 TAGACTTTAGTTTTAGTTTTATTGGGTTG-GTAATTGGA
14366823 TAGACTTTAGTTTTAGTTTTATTGGGTTGGATAATT
1 TAGACTTTAGTTTTAGTTTTATTGGGTTGG-TAATT
14366859 TTATTTATTA
Statistics
Matches: 69, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
38 28 0.41
39 41 0.59
ACGTcount: A:0.21, C:0.04, G:0.25, T:0.50
Consensus pattern (38 bp):
TAGACTTTAGTTTTAGTTTTATTGGGTTGGTAATTGGA
Found at i:14367925 original size:21 final size:21
Alignment explanation
Indices: 14367899--14367953 Score: 74
Period size: 21 Copynumber: 2.6 Consensus size: 21
14367889 CAGATTAACC
* *
14367899 CTTATGGGTTTCCATTCATCT
1 CTTATGAGTTTCCATTCAACT
*
14367920 CTTATGAGTTTCCGTTCAACT
1 CTTATGAGTTTCCATTCAACT
*
14367941 CTTACGAGTTTCC
1 CTTATGAGTTTCC
14367954 GTTTAGCACT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.16, C:0.25, G:0.15, T:0.44
Consensus pattern (21 bp):
CTTATGAGTTTCCATTCAACT
Found at i:14367954 original size:21 final size:21
Alignment explanation
Indices: 14367906--14367956 Score: 75
Period size: 21 Copynumber: 2.4 Consensus size: 21
14367896 ACCCTTATGG
* * *
14367906 GTTTCCATTCATCTCTTATGA
1 GTTTCCGTTCAACTCTTACGA
14367927 GTTTCCGTTCAACTCTTACGA
1 GTTTCCGTTCAACTCTTACGA
14367948 GTTTCCGTT
1 GTTTCCGTT
14367957 TAGCACTTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.16, C:0.25, G:0.14, T:0.45
Consensus pattern (21 bp):
GTTTCCGTTCAACTCTTACGA
Found at i:14367965 original size:21 final size:21
Alignment explanation
Indices: 14367906--14367965 Score: 57
Period size: 21 Copynumber: 2.9 Consensus size: 21
14367896 ACCCTTATGG
* * * *
14367906 GTTTCCATTCATCTCTTATGA
1 GTTTCCGTTCAACACTTACGA
*
14367927 GTTTCCGTTCAACTCTTACGA
1 GTTTCCGTTCAACACTTACGA
* *
14367948 GTTTCCGTTTAGCACTTA
1 GTTTCCGTTCAACACTTA
14367966 TGTGCTTCTG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.18, C:0.25, G:0.13, T:0.43
Consensus pattern (21 bp):
GTTTCCGTTCAACACTTACGA
Found at i:14384172 original size:176 final size:175
Alignment explanation
Indices: 14383877--14384229 Score: 494
Period size: 176 Copynumber: 2.0 Consensus size: 175
14383867 ATCTTCCCCC
* * * * *
14383877 TACCATCTCCCCTCTTCTCTCCCTCGTCTCTGCAAATCAATTTTTTTTTTCTTCTCATCTCAGTT
1 TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAATTTTTATTCTCTTCTCATCTCAGTT
* * *
14383942 CTCGCCCACCGCCGTGTCCGCTGATTTTTTCCTGATCTGACCCGTATTCCGTGTCGGATCGTGTT
66 CTCGCCCACCGCC--GTCCGCTGATTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGTC
* *
14384007 GACACAGGTACTGCACCCCAAATTG-CCGAGTCAGGGTAACGAAGCT
129 GACACAAGTACTGCACCCCAAATTGCCCGAGCCAGGGTAACGAAGCT
** *
14384053 TACCATCGCCCCTCTTCTCTTTCTCGTATCTACAAATCAGGTTTCTTCATTCTCTTCTCATCTCA
1 TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCA-ATTT-TT-ATTCTCTTCTCATCTCA
*
14384118 GTTCTCGCCCACCGCC-TCCGCTGGTTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGT
63 GTTCTCGCCCACCGCCGTCCGCTGATTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGT
* *
14384182 CGACACAAGTACTGCATCCCAAATTGCTCCGAGCCCGGGTAACGAAGC
128 CGACACAAGTACTGCACCCCAAATTGC-CCGAGCCAGGGTAACGAAGC
14384230 CTATAATTAT
Statistics
Matches: 156, Mismatches: 16, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
176 102 0.65
177 3 0.02
178 20 0.13
179 31 0.20
ACGTcount: A:0.17, C:0.34, G:0.17, T:0.32
Consensus pattern (175 bp):
TACCATCGCCCCTCTTCTCTCCCTCGTATCTACAAATCAATTTTTATTCTCTTCTCATCTCAGTT
CTCGCCCACCGCCGTCCGCTGATTTTTTCCGGATCTGACCCGTATCCCGTGTCGGATCGTGTCGA
CACAAGTACTGCACCCCAAATTGCCCGAGCCAGGGTAACGAAGCT
Found at i:14384245 original size:12 final size:12
Alignment explanation
Indices: 14384228--14384252 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14384218 GGGTAACGAA
14384228 GCCTATAATTAT
1 GCCTATAATTAT
14384240 GCCTATAATTAT
1 GCCTATAATTAT
14384252 G
1 G
14384253 TTTCTCATAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.16, G:0.12, T:0.40
Consensus pattern (12 bp):
GCCTATAATTAT
Found at i:14389239 original size:38 final size:38
Alignment explanation
Indices: 14389197--14389344 Score: 179
Period size: 41 Copynumber: 3.7 Consensus size: 38
14389187 TACAATAATT
* *
14389197 TTTTTTATTTTTTAAATTTTAAAATACTTTTAAAATAC
1 TTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
14389235 TTTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAC
1 -TTTTTT--ATTTTTTTAATTTTAAAATATTTTTAAAATAC
** *
14389276 TTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATAAA
1 TTTTTTATTTTTTTAATTTTAAAATATTTTTAAAAT-AC
14389315 TTTTTTATTTTTGTTTTAATTTTTAAAATA
1 TTTTTTA--TTT-TTTTAA-TTTTAAAATA
14389345 AATTTTTTGA
Statistics
Matches: 95, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
38 30 0.32
39 12 0.13
40 4 0.04
41 33 0.35
42 6 0.06
43 10 0.11
ACGTcount: A:0.36, C:0.02, G:0.01, T:0.61
Consensus pattern (38 bp):
TTTTTTATTTTTTTAATTTTAAAATATTTTTAAAATAC
Found at i:14389315 original size:32 final size:33
Alignment explanation
Indices: 14389279--14389352 Score: 89
Period size: 32 Copynumber: 2.3 Consensus size: 33
14389269 AAAATACTTT
14389279 TAAATTTTTTTAATTTTAAAAT-ATTTTTAAAA
1 TAAATTTTTTTAATTTTAAAATAATTTTTAAAA
* ****
14389311 TAAA-TTTTTTATTTTTGTTTTAATTTTTAAAA
1 TAAATTTTTTTAATTTTAAAATAATTTTTAAAA
14389343 TAAATTTTTT
1 TAAATTTTTT
14389353 GATATTTATT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
31 12 0.34
32 18 0.51
33 5 0.14
ACGTcount: A:0.36, C:0.00, G:0.01, T:0.62
Consensus pattern (33 bp):
TAAATTTTTTTAATTTTAAAATAATTTTTAAAA
Found at i:14389319 original size:13 final size:11
Alignment explanation
Indices: 14389213--14389312 Score: 60
Period size: 11 Copynumber: 9.9 Consensus size: 11
14389203 ATTTTTTAAA
*
14389213 TTTTAAAATAC
1 TTTTAAAATAT
14389224 TTTTAAAATACTT
1 TTTTAAAATA--T
*
14389237 TTTTTAAAT-T
1 TTTTAAAATAT
*
14389247 TTTT----TAA
1 TTTTAAAATAT
14389254 TTTTAAAATAT
1 TTTTAAAATAT
*
14389265 TTTTAAAATAC
1 TTTTAAAATAT
14389276 TTTT-AAAT-T
1 TTTTAAAATAT
*
14389285 TTTT----TAA
1 TTTTAAAATAT
14389292 TTTTAAAATAT
1 TTTTAAAATAT
14389303 TTTTAAAATA
1 TTTTAAAATA
14389313 AATTTTTTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 24
0.68 0.08 0.24
Matches are distributed among these distances:
6 2 0.03
7 8 0.12
9 4 0.06
10 9 0.13
11 38 0.55
13 8 0.12
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14389365 original size:32 final size:32
Alignment explanation
Indices: 14389301--14389365 Score: 96
Period size: 32 Copynumber: 2.0 Consensus size: 32
14389291 ATTTTAAAAT
* *
14389301 ATTTTTAAAATAAATTTTTTATTTTTGTTTTA
1 ATTTTTAAAATAAATTTTTTATATTTGATTTA
14389333 ATTTTTAAAATAAATTTTTTGATATTT-ATTTA
1 ATTTTTAAAATAAATTTTTT-ATATTTGATTTA
14389365 A
1 A
14389366 AAAACGGGCC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 25 0.83
33 5 0.17
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (32 bp):
ATTTTTAAAATAAATTTTTTATATTTGATTTA
Found at i:14397674 original size:32 final size:32
Alignment explanation
Indices: 14397638--14397701 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
14397628 GAAGTTCAAC
*
14397638 GTGTCAAGTGTGGCTAAGGAGGACGAAGCTGG
1 GTGTCAAGTGTAGCTAAGGAGGACGAAGCTGG
14397670 GTGTCAAGTGTAGCTAAGGAGGACGAAGCTGG
1 GTGTCAAGTGTAGCTAAGGAGGACGAAGCTGG
14397702 ATGCGGTAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.12, G:0.42, T:0.19
Consensus pattern (32 bp):
GTGTCAAGTGTAGCTAAGGAGGACGAAGCTGG
Found at i:14406472 original size:9 final size:9
Alignment explanation
Indices: 14406455--14406491 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
14406445 TGAGTTTTCG
14406455 AATTCGAAT
1 AATTCGAAT
*
14406464 AACTCGAAT
1 AATTCGAAT
14406473 AATTCGAAT
1 AATTCGAAT
14406482 AATTCGAAT
1 AATTCGAAT
14406491 A
1 A
14406492 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:14407517 original size:5 final size:5
Alignment explanation
Indices: 14407507--14407532 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
14407497 CTCGAAAATT
14407507 TTCGA TTCGA TTCGA TTCGA TTCGA T
1 TTCGA TTCGA TTCGA TTCGA TTCGA T
14407533 AGAATGCTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.42
Consensus pattern (5 bp):
TTCGA
Found at i:14409345 original size:52 final size:52
Alignment explanation
Indices: 14409283--14409388 Score: 212
Period size: 52 Copynumber: 2.0 Consensus size: 52
14409273 GAACCTTTAC
14409283 CTGCACCAATGAACCCTCATTTTTATTTAAAAGTAATTATCTGATACATTGA
1 CTGCACCAATGAACCCTCATTTTTATTTAAAAGTAATTATCTGATACATTGA
14409335 CTGCACCAATGAACCCTCATTTTTATTTAAAAGTAATTATCTGATACATTGA
1 CTGCACCAATGAACCCTCATTTTTATTTAAAAGTAATTATCTGATACATTGA
14409387 CT
1 CT
14409389 CCATAAGTAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 54 1.00
ACGTcount: A:0.34, C:0.20, G:0.09, T:0.37
Consensus pattern (52 bp):
CTGCACCAATGAACCCTCATTTTTATTTAAAAGTAATTATCTGATACATTGA
Found at i:14419352 original size:18 final size:18
Alignment explanation
Indices: 14419325--14419360 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
14419315 AATTCTAATA
*
14419325 CCTTTTCCTTTTACAAAC
1 CCTTTACCTTTTACAAAC
14419343 CCTTTACCTTTTACAAAC
1 CCTTTACCTTTTACAAAC
14419361 TCGTATTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.33, G:0.00, T:0.42
Consensus pattern (18 bp):
CCTTTACCTTTTACAAAC
Found at i:14429862 original size:3 final size:3
Alignment explanation
Indices: 14429854--14429898 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
14429844 TACTATTTAC
14429854 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14429899 ACCTATACAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14434974 original size:47 final size:46
Alignment explanation
Indices: 14434916--14435006 Score: 130
Period size: 47 Copynumber: 2.0 Consensus size: 46
14434906 AAAAAGGTGG
* *
14434916 GACCAAGGTGAAAGCCTACAAA-GGACGCTTTGAGTCAAAAAAAAAGA
1 GACCAAGGTGAAACCCTACAAAGGGA-GCCTTGAGT-AAAAAAAAAGA
*
14434963 GACCAGGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAA
1 GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAA
14435007 TGGAGAGGCT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
46 9 0.22
47 28 0.70
48 3 0.08
ACGTcount: A:0.46, C:0.18, G:0.24, T:0.12
Consensus pattern (46 bp):
GACCAAGGTGAAACCCTACAAAGGGAGCCTTGAGTAAAAAAAAAGA
Found at i:14436411 original size:48 final size:48
Alignment explanation
Indices: 14436359--14436607 Score: 214
Period size: 48 Copynumber: 5.4 Consensus size: 48
14436349 CACCTTTCCA
*
14436359 TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
1 TACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
* * * * * * ***
14436407 TACTGG-CGTGAAGTAGATC-AA--ATATA-CAGATCTCGCCTTCCCA
1 TACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
*
14436450 TACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAAATCTTGTCTTCATG
1 TACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
* * * * * * ***
14436498 TACTGG-CGTGAAGTAGATC-AA--AGATA-CAGATCTCGCCTTCCCA
1 TACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
*
14436541 TACTGGTGGCGAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
1 TACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
* *
14436589 TACTGG-CGTGAAGTAGATC
1 TACTGGTGGCGAAGTAGATC
14436608 AAAGATAACA
Statistics
Matches: 148, Mismatches: 43, Indels: 21
0.70 0.20 0.10
Matches are distributed among these distances:
43 35 0.24
44 27 0.18
45 4 0.03
46 4 0.03
47 37 0.25
48 41 0.28
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (48 bp):
TACTGGTGGCGAAGTAGATCGAAGGAAAAAGCAGATCTTGTCTTCATG
Found at i:14436638 original size:44 final size:44
Alignment explanation
Indices: 14436325--14436970 Score: 229
Period size: 44 Copynumber: 14.4 Consensus size: 44
14436315 TATTGGTAGC
* * * * *
14436325 GAAGTAGATCAAATAT-ACAGATCTCACCTTTCCATACTGGTGGC
1 GAAGTAGATCAAAGATAACAGATCTCGCCTTCCCATACTGG-CGT
* * * * * ***
14436369 GAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATGTACTGGCGT
1 GAAGTAGATC-AAAG-ATAA-CAGATCTCGCCTTCCCATACTGGCGT
* * *
14436416 GAAGTAGATCAAATAT-ACAGATCTCGCCTTCCCATACTGGTGGC
1 GAAGTAGATCAAAGATAACAGATCTCGCCTTCCCATACTGG-CGT
* * * * * ***
14436460 GAAGTAGATCGAAGGAAAAAGCAAATCTTGTCTTCATGTACTGGCGT
1 GAAGTAGATC-AAAG-ATAA-CAGATCTCGCCTTCCCATACTGGCGT
* *
14436507 GAAGTAGATCAAAGAT-ACAGATCTCGCCTTCCCATACTGGTGGC
1 GAAGTAGATCAAAGATAACAGATCTCGCCTTCCCATACTGG-CGT
* * * * * ***
14436551 GAAGCAGATCGAAGGAAAAAGCAGATCTTGTCTTCATGTACTGGCGT
1 GAAGTAGATC-AAAG-ATAA-CAGATCTCGCCTTCCCATACTGGCGT
* * *
14436598 GAAGTAGATCAAAGATAACAAATCTCGCCTTCCCATACTGGTGGC
1 GAAGTAGATCAAAGATAACAGATCTCGCCTTCCCATACTGG-CGT
* * * * * *** *
14436643 GAAGCAGATCGAAAGA-AATTAGATATGGTCTTCATGTA-TCAGCGT
1 GAAGTAGATC-AAAGATAA-CAGATCTCGCCTTCCCATACT-GGCGT
* * * *
14436688 GAAGTAGATCAAAG-TCAACAGATCTTGTCTCCCCATACTGGTGGT
1 GAAGTAGATCAAAGAT-AACAGATCTCGCCTTCCCATACTGG-CGT
* * ** ***
14436733 GGAGTAGATCAAAGA-AATCAGATATTACCTTCATGTA-TCGGCGT
1 GAAGTAGATCAAAGATAA-CAGATCTCGCCTTCCCATACT-GGCGT
* * * *
14436777 GAAGTAGATCAAAG-TCAACAGATCTTGTCTCCCCATACTGGTGGT
1 GAAGTAGATCAAAGAT-AACAGATCTCGCCTTCCCATACTGG-CGT
* ** * ***
14436822 GGAGTAGATCAAAGA-AAGCAGATCTTACATTCATGTA-TCGGCGT
1 GAAGTAGATCAAAGATAA-CAGATCTCGCCTTCCCATACT-GGCGT
* * * * * *
14436866 GAAGTAGATCAAAG-GAACATATCTTGTCTCCCCATACTGGTGGT
1 GAAGTAGATCAAAGATAACAGATCTCGCCTTCCCATACTGG-CGT
* * * * * ***
14436910 GGAGTAGGTCGAAGAAAACAGATCGT-GTCTTCATGTACTGGCGT
1 GAAGTAGATCAAAGATAACAGATC-TCGCCTTCCCATACTGGCGT
14436954 GAAGTAGATCAAAGATA
1 GAAGTAGATCAAAGATA
14436971 GTAGGTCCTG
Statistics
Matches: 426, Mismatches: 139, Indels: 74
0.67 0.22 0.12
Matches are distributed among these distances:
43 48 0.11
44 147 0.35
45 117 0.27
46 29 0.07
47 34 0.08
48 51 0.12
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (44 bp):
GAAGTAGATCAAAGATAACAGATCTCGCCTTCCCATACTGGCGT
Found at i:14436741 original size:45 final size:44
Alignment explanation
Indices: 14436690--14436939 Score: 186
Period size: 45 Copynumber: 5.6 Consensus size: 44
14436680 ATCAGCGTGA
*
14436690 AGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGG
1 AGTAGATCAAAG-AAACAGATCTTGTCTCCCCATACTGGTGGTGG
* ** * *** * *
14436735 AGTAGATCAAAGAAATCAGATATTACCTTCATGTA-TCGG-CGTGA
1 AGTAGATCAAAGAAA-CAGATCTTGTCTCCCCATACT-GGTGGTGG
*
14436779 AGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGG
1 AGTAGATCAAAG-AAACAGATCTTGTCTCCCCATACTGGTGGTGG
* * *** * *
14436824 AGTAGATCAAAGAAAGCAGATCTT-ACATTCATGTA-TCGG-CGTGA
1 AGTAGATCAAAGAAA-CAGATCTTGTC-TCCCCATACT-GGTGGTGG
* *
14436868 AGTAGATCAAAGGAACATATCTTGTCTCCCCATACTGGTGGTGG
1 AGTAGATCAAAGAAACAGATCTTGTCTCCCCATACTGGTGGTGG
* * *
14436912 AGTAGGTCGAAGAAAACAGATCGTGTCT
1 AGTAGATCAAAG-AAACAGATCTTGTCT
14436940 TCATGTACTG
Statistics
Matches: 151, Mismatches: 42, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
43 13 0.09
44 68 0.45
45 70 0.46
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (44 bp):
AGTAGATCAAAGAAACAGATCTTGTCTCCCCATACTGGTGGTGG
Found at i:14436783 original size:89 final size:89
Alignment explanation
Indices: 14436325--14436967 Score: 703
Period size: 91 Copynumber: 7.2 Consensus size: 89
14436315 TATTGGTAGC
* ** * *
14436325 GAAGTAGATCAAA-TATACAGATCTCACCTTTCCATACTGGTGGCGAAGCAGATCGAAGGAAAAA
1 GAAGTAGATCAAAGTA-ACAGATCTCGCCTCCCCATACTGGTGGCGAAGTAGATCGAA--AGAAA
14436389 GCAGATCTTGTCTTCATGTACTGGCGT
63 GCAGATCTTGTCTTCATGTACTGGCGT
* *
14436416 GAAGTAGATCAAA-TATACAGATCTCGCCTTCCCATACTGGTGGCGAAGTAGATCGAAGGAAAAA
1 GAAGTAGATCAAAGTA-ACAGATCTCGCCTCCCCATACTGGTGGCGAAGTAGATCGAA--AGAAA
*
14436480 GCAAATCTTGTCTTCATGTACTGGCGT
63 GCAGATCTTGTCTTCATGTACTGGCGT
* * *
14436507 GAAGTAGATCAAAG-ATACAGATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAGGAAAAA
1 GAAGTAGATCAAAGTA-ACAGATCTCGCCTCCCCATACTGGTGGCGAAGTAGATCGAA--AGAAA
14436571 GCAGATCTTGTCTTCATGTACTGGCGT
63 GCAGATCTTGTCTTCATGTACTGGCGT
* * * **
14436598 GAAGTAGATCAAAGATAACAAATCTCGCCTTCCCATACTGGTGGCGAAGCAGATCGAAAGAAATT
1 GAAGTAGATCAAAG-TAACAGATCTCGCCTCCCCATACTGGTGGCGAAGTAGATCGAAAGAAAGC
* * *
14436663 AGATATGGTCTTCATGTA-TCAGCGT
65 AGATCTTGTCTTCATGTACT-GGCGT
* * * * *
14436688 GAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATC-AAAGAAATC
1 GAAGTAGATCAAAGT-AACAGATCTCGCCTCCCCATACTGGTGGCGAAGTAGATCGAAAGAAAGC
* **
14436752 AGATATTACCTTCATGTA-TCGGCGT
65 AGATCTTGTCTTCATGTACT-GGCGT
* * * *
14436777 GAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATC-AAAGAAAGC
1 GAAGTAGATCAAAGT-AACAGATCTCGCCTCCCCATACTGGTGGCGAAGTAGATCGAAAGAAAGC
*
14436841 AGATCTT-ACATTCATGTA-TCGGCGT
65 AGATCTTGTC-TTCATGTACT-GGCGT
* * * * * * * *
14436866 GAAGTAGATCAAAGGAACATATCTTGTCTCCCCATACTGGTGGTGGAGTAGGTCG-AAGAAAACA
1 GAAGTAGATCAAAGTAACAGATCTCGCCTCCCCATACTGGTGGCGAAGTAGATCGAAAGAAAGCA
*
14436930 GATCGTGTCTTCATGTACTGGCGT
66 GATCTTGTCTTCATGTACTGGCGT
14436954 GAAGTAGATCAAAG
1 GAAGTAGATCAAAG
14436968 ATAGTAGGTC
Statistics
Matches: 509, Mismatches: 34, Indels: 21
0.90 0.06 0.04
Matches are distributed among these distances:
88 78 0.15
89 131 0.26
90 70 0.14
91 189 0.37
92 40 0.08
93 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.24, T:0.25
Consensus pattern (89 bp):
GAAGTAGATCAAAGTAACAGATCTCGCCTCCCCATACTGGTGGCGAAGTAGATCGAAAGAAAGCA
GATCTTGTCTTCATGTACTGGCGT
Found at i:14438756 original size:3 final size:3
Alignment explanation
Indices: 14438748--14438780 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
14438738 TTCTATTTAC
14438748 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
14438781 ACCTATACAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:14449696 original size:33 final size:32
Alignment explanation
Indices: 14449624--14449700 Score: 82
Period size: 33 Copynumber: 2.3 Consensus size: 32
14449614 TAGATACATG
* * * **
14449624 TGTAAGACCATAGCTGGGCTATGGCATTCTGA
1 TGTAAGACCATAACTGAGCTATGGCATACAAA
*
14449656 TGATAAGACCATAACTGAGTTATGGCACTACAAA
1 TG-TAAGACCATAACTGAGCTATGGCA-TACAAA
14449690 TGTAAGACCAT
1 TGTAAGACCAT
14449701 GGCAGGGTCA
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
32 2 0.05
33 30 0.81
34 5 0.14
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (32 bp):
TGTAAGACCATAACTGAGCTATGGCATACAAA
Found at i:14449713 original size:105 final size:99
Alignment explanation
Indices: 14449519--14449748 Score: 291
Period size: 105 Copynumber: 2.3 Consensus size: 99
14449509 AATGTTTAAA
* **
14449519 TGTAAGACCATAGCTGGGCTATGGCATTTTAATGAAAAGACCATAACTGAGTTATGGCACCTTGA
1 TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAGTTATGGCACCTACA
**
14449584 AAGTAAGACCATGGTTGGACCATGGCAGTATAGATACATG
66 AAGTAAGACCATGGCAGGACCATGGCA--AT-G---CATG
* *
14449624 TGTAAGACCATAGCTGGGCTATGGCATTCTGATGATAAGACCATAACTGAGTTATGGCA-CTACA
1 TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAGTTATGGCACCTACA
**
14449688 AATGTAAGACCATGGCAGGGTCATGGCAATGCATG
66 AA-GTAAGACCATGGCAGGACCATGGCAATGCATG
* *
14449723 TGTAAGACCATAGTTGGACTATGGCA
1 TGTAAGACCATAGCTGGGCTATGGCA
14449749 CAAAAAGAAC
Statistics
Matches: 113, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
99 28 0.25
102 1 0.01
103 2 0.02
104 5 0.04
105 77 0.68
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (99 bp):
TGTAAGACCATAGCTGGGCTATGGCATTCTAATGAAAAGACCATAACTGAGTTATGGCACCTACA
AAGTAAGACCATGGCAGGACCATGGCAATGCATG
Done.