genome.fa.s18.2.7.7.80.10.50.1000.38.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Length:  63323194

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   

This is table  38  of  199  ( 23841 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15214297--15214330	17	2.0	17	94	0	59	44	50	0	5	1.26
15218927--15218960	17	2.0	17	94	0	59	44	50	0	5	1.26
15225289--15225436	37	4.0	37	94	0	251	27	20	13	38	1.90
15232385--15232437	27	2.0	25	82	13	63	16	3	1	77	1.01
15232795--15232833	7	5.4	7	81	6	51	43	43	0	12	1.42
15232798--15232850	22	2.3	24	90	6	83	37	47	0	15	1.45
15233109--15233340	114	2.0	114	92	1	385	26	26	21	25	1.99
15233240--15233778	73	7.4	73	89	2	730	25	25	21	27	2.00
15245966--15246070	24	4.5	24	89	2	151	44	5	27	21	1.75
15273036--15273490	47	9.6	47	91	1	676	32	8	29	29	1.86
15273036--15273490	96	4.8	96	92	2	688	32	8	29	29	1.86
15296700--15296740	19	2.1	20	90	4	66	58	2	7	31	1.38
15311058--15311120	26	2.4	26	89	2	81	65	0	20	14	1.27
15319633--15319677	23	2.0	23	82	8	56	71	0	8	20	1.12
15320593--15320656	21	3.0	22	68	9	60	17	17	26	39	1.91
15336767--15336813	23	2.0	23	91	0	76	51	12	8	27	1.69
15337969--15337995	3	9.0	3	100	0	54	33	0	0	66	0.92
15340325--15340373	19	2.6	18	81	9	53	59	0	0	40	0.98
15343178--15343219	14	2.8	15	80	19	52	26	2	2	69	1.13
15346877--15347153	32	8.7	32	78	7	210	44	12	8	33	1.73
15346892--15347107	64	3.4	64	88	0	297	42	12	9	35	1.75
15346887--15347109	96	2.3	97	84	2	288	43	12	9	35	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15347085--15347161	31	2.5	30	77	6	82	48	14	5	32	1.66
15349146--15349177	5	6.4	5	92	0	55	78	0	21	0	0.76
15355774--15355842	33	2.1	33	91	5	113	42	36	7	14	1.73
15355819--15355854	12	3.0	12	84	15	56	41	25	11	22	1.86
15359176--15359201	4	6.5	4	100	0	52	76	0	23	0	0.78
15370206--15370260	25	2.2	25	81	9	67	23	45	0	30	1.53
15370895--15370920	5	5.2	5	100	0	52	23	19	19	38	1.93
15382324--15382354	15	2.0	15	93	6	53	70	0	3	25	1.02
15401903--15401971	21	3.3	21	77	0	84	14	24	18	42	1.88
15401860--15401971	42	2.7	42	84	4	136	16	22	19	41	1.89
15404953--15405080	33	3.9	32	71	17	77	35	14	21	28	1.93
15404887--15405080	101	1.9	101	86	2	273	34	13	21	29	1.92
15416498--15416618	9	13.4	9	80	3	145	26	11	21	40	1.87
15420470--15420507	13	3.2	12	88	7	51	63	0	0	36	0.95
15420681--15420712	16	2.1	15	94	5	55	46	6	0	46	1.27
15421451--15421512	31	2.0	31	93	0	106	16	25	35	22	1.94
15426589--15426702	56	2.0	56	93	0	192	22	23	10	42	1.84
15426866--15427573	355	2.0	355	97	0	1335	41	18	17	22	1.91
15430134--15430178	23	1.9	24	95	4	83	57	33	0	8	1.30
15430501--15430783	147	1.9	147	84	5	376	37	8	9	44	1.67
15431484--15431547	31	2.0	31	82	8	76	32	7	0	59	1.26
15435642--15435675	16	2.1	16	88	0	50	50	14	17	17	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15438471--15438511	21	2.0	21	90	0	64	29	21	29	19	1.98
15440415--15440448	16	2.1	16	88	0	50	50	14	17	17	1.79
15452591--15452619	13	2.2	13	100	0	58	17	0	37	44	1.49
15455810--15455847	18	2.0	20	85	10	53	31	5	2	60	1.33
15457902--15458000	46	2.3	45	84	8	125	41	1	8	49	1.39
15461791--15461920	46	2.8	46	92	0	215	30	23	8	37	1.84
15464513--15464692	24	7.3	25	70	9	86	16	23	21	38	1.93
15465174--15465287	39	2.8	40	90	5	167	33	3	0	63	1.12
15465266--15465307	19	2.2	19	83	8	50	38	2	0	59	1.10
15465265--15465308	20	2.3	19	88	4	61	36	2	0	61	1.09
15465182--15465301	39	3.0	40	83	11	142	36	3	0	60	1.14
15466989--15467260	126	2.2	126	85	2	368	29	16	17	36	1.92
15467326--15467390	34	1.9	34	90	0	103	47	13	0	38	1.43
15467325--15467399	34	2.2	33	83	6	96	49	12	0	38	1.40
15467700--15467752	27	2.0	27	85	7	72	47	13	11	28	1.77
15485739--15485766	5	5.6	5	100	0	56	82	0	0	17	0.68
15498212--15498250	16	2.4	16	82	0	51	20	5	10	64	1.44
15499615--15499724	57	1.9	56	96	1	202	25	5	10	58	1.53
15500485--15500550	34	2.0	34	87	3	98	33	1	9	56	1.40
15503967--15504011	19	2.4	19	85	10	58	35	2	2	60	1.22
15504540--15504566	5	5.4	5	100	0	54	40	0	40	18	1.51
15511720--15511790	18	3.7	19	74	17	58	56	2	2	38	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15512810--15512879	35	2.0	35	97	0	131	32	15	25	25	1.95
15515841--15515996	74	2.1	74	82	0	195	48	7	17	26	1.74
15518118--15518903	114	6.9	115	86	3	1002	24	22	24	29	1.99
15519341--15519383	7	5.9	7	83	5	50	16	2	48	32	1.58
15519344--15519368	8	3.1	8	100	0	50	12	0	48	40	1.40
15519336--15519382	15	3.1	15	79	11	51	14	2	44	38	1.58
15519786--15520469	106	6.1	106	77	13	640	44	14	13	27	1.83
15524869--15524933	30	2.1	32	85	5	89	46	6	0	47	1.27
15524878--15524922	23	2.0	22	86	4	63	46	6	0	46	1.29
15524900--15524984	20	4.4	20	77	12	72	44	8	0	47	1.33
15524968--15525671	9	80.9	9	64	20	141	45	19	2	32	1.63
15524955--15525015	20	3.1	20	83	6	72	49	14	0	36	1.44
15524999--15525086	25	3.5	25	82	0	95	45	19	3	31	1.67
15524997--15525203	50	4.4	48	73	13	178	45	18	2	33	1.64
15525063--15525150	21	4.1	21	74	8	79	46	13	0	39	1.43
15525040--15525243	43	4.5	43	76	10	165	46	16	1	36	1.56
15525135--15525344	25	8.9	25	70	10	120	45	19	2	32	1.65
15525229--15525267	20	2.0	19	95	5	69	53	15	0	30	1.42
15525136--15525371	113	2.1	112	85	5	309	45	18	2	33	1.63
15525444--15525478	12	2.9	12	86	0	52	45	14	11	28	1.79
15525487--15525638	34	4.7	33	77	10	161	45	21	2	30	1.66
15525528--15525667	16	8.7	16	71	13	90	45	22	1	30	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15525577--15525673	25	3.9	24	73	16	90	45	20	0	34	1.52
15527412--15527461	21	2.4	21	86	0	64	36	18	42	4	1.69
15530163--15530289	37	3.2	37	78	18	146	27	20	18	33	1.96
15530209--15530324	46	2.5	46	92	1	189	29	22	12	35	1.91
15533174--15533212	21	1.9	19	90	10	60	53	5	5	35	1.45
15533166--15533215	19	2.5	19	83	6	64	54	4	4	38	1.38
15534680--15535101	46	9.7	46	82	11	498	28	21	14	35	1.93
15534861--15535015	36	4.0	36	78	15	166	28	20	14	37	1.91
15534815--15535061	82	3.0	82	93	0	413	28	20	14	36	1.91
15534768--15535101	128	2.6	125	82	11	396	29	21	13	35	1.92
15536838--15536862	10	2.5	10	100	0	50	84	0	0	16	0.63
15537249--15537286	5	7.8	5	85	5	51	84	0	2	13	0.73
15537254--15537280	14	1.9	14	100	0	54	81	0	3	14	0.82
15537248--15537285	19	2.0	19	94	0	67	81	0	5	13	0.85
15537791--15537878	44	2.0	44	86	0	122	14	17	30	37	1.90
15543119--15543186	35	1.9	35	87	0	100	29	2	2	64	1.22
15543114--15543195	35	2.5	31	73	16	85	34	2	2	60	1.23
15543135--15543195	17	3.4	18	68	11	54	36	3	0	60	1.13
15545481--15545552	29	2.4	29	75	8	74	44	2	9	43	1.51
15551092--15551126	15	2.3	15	85	0	52	62	5	31	0	1.18
15551097--15551146	18	2.8	17	75	19	57	58	6	34	2	1.34
15551669--15551878	69	3.0	69	98	0	402	34	14	20	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15552288--15552324	18	2.1	18	94	0	65	43	10	24	21	1.84
15555056--15555089	16	2.0	18	88	11	54	38	0	0	61	0.96
15556052--15556085	16	2.2	16	89	5	52	58	0	0	41	0.98
15559789--15559813	10	2.5	10	100	0	50	64	8	20	8	1.46
15564116--15564140	10	2.5	10	100	0	50	64	8	20	8	1.46
15582059--15582096	19	2.0	19	89	0	58	39	34	5	21	1.76
15583628--15583655	6	4.7	6	100	0	56	35	0	32	32	1.58
15594574--15594625	5	10.4	5	95	0	95	38	0	21	40	1.53
15597042--15597080	18	2.1	19	85	4	53	43	7	0	48	1.31
15598326--15598460	40	3.4	39	76	7	121	33	25	15	25	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199