Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 57 of 199
Found at i:22154958 original size:27 final size:28
Alignment explanation
Indices: 22154888--22154958 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 28
22154878 TAAAACATAA
*
22154888 AACCCTAAACCTAAAACTTAAAAATCCCT
1 AACCCTAAACCT-AAACCTAAAAATCCCT
* *
22154917 AACCCTAACCCTAAACCTAAAAA-CCTT
1 AACCCTAAACCTAAACCTAAAAATCCCT
* *
22154944 AACCCTTAACTTAAA
1 AACCCTAAACCTAAA
22154959 AACCATAAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
27 15 0.42
28 10 0.28
29 11 0.31
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.21
Consensus pattern (28 bp):
AACCCTAAACCTAAACCTAAAAATCCCT
Found at i:22154968 original size:122 final size:122
Alignment explanation
Indices: 22154795--22155026 Score: 301
Period size: 122 Copynumber: 1.9 Consensus size: 122
22154785 TTAACTTAAA
* * * * * **
22154795 AACCCTAACCCTTAGCTTAAAAATGCTAACCCTTAACTTAAAAACCTTAAACTTTAAACCTAAAA
1 AACCCTAACCCTAAACCTAAAAATCCTAACCCTTAACTTAAAAACCATAAACCATAAACCTAAAA
22154860 ACTA-TAAACCCTAAAC-TTTAAAACATAAAACCCTAAACC-TAAAACTTAAAAATCCCT
66 AC-ACT-AACCCTAAACTTTTAAAACAT-AAACCCTAAACCATAAAACTTAAAAATCCCT
22154917 AACCCTAACCCTAAACCTAAAAA-CCTTAACCCTTAACTTAAAAACCATAAACCATAAACCTAAA
1 AACCCTAACCCTAAACCTAAAAATCC-TAACCCTTAACTTAAAAACCATAAACCATAAACCTAAA
* * * *
22154981 AACACTAACCTTTAACTTTTAAACCCTAAACCCTAAACCATAAAAC
65 AACACTAACCCTAAACTTTTAAAACATAAACCCTAAACCATAAAAC
22155027 ACAAAAACTT
Statistics
Matches: 95, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
121 22 0.23
122 73 0.77
ACGTcount: A:0.48, C:0.28, G:0.01, T:0.23
Consensus pattern (122 bp):
AACCCTAACCCTAAACCTAAAAATCCTAACCCTTAACTTAAAAACCATAAACCATAAACCTAAAA
ACACTAACCCTAAACTTTTAAAACATAAACCCTAAACCATAAAACTTAAAAATCCCT
Found at i:22154975 original size:43 final size:43
Alignment explanation
Indices: 22154923--22155025 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
22154913 CCCTAACCCT
22154923 AACCCTAAACCTAAAAAC-CTTAACCCTTAACTTAAAAACCATA
1 AACCCTAAACCTAAAAACAC-TAACCCTTAACTTAAAAACCATA
* * ** *
22154966 AACCATAAACCTAAAAACACTAACCTTTAACTTTTAAACCCTA
1 AACCCTAAACCTAAAAACACTAACCCTTAACTTAAAAACCATA
22155009 AACCCTAAACCATAAAA
1 AACCCTAAACC-TAAAA
22155026 CACAAAAACT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
43 46 0.88
44 6 0.12
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (43 bp):
AACCCTAAACCTAAAAACACTAACCCTTAACTTAAAAACCATA
Found at i:22155034 original size:23 final size:22
Alignment explanation
Indices: 22155008--22155071 Score: 65
Period size: 23 Copynumber: 2.8 Consensus size: 22
22154998 TTTAAACCCT
*
22155008 AAACCCTAAACCATAAAACACAA
1 AAACCTTAAACC-TAAAACACAA
* * **
22155031 AAACTTTAAACCTTAAACTTAA
1 AAACCTTAAACCTAAAACACAA
22155053 AAACCTTAAACCCTAAAAC
1 AAACCTTAAA-CCTAAAAC
22155072 CTTAACTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 2
0.79 0.17 0.05
Matches are distributed among these distances:
22 16 0.48
23 17 0.52
ACGTcount: A:0.55, C:0.27, G:0.00, T:0.19
Consensus pattern (22 bp):
AAACCTTAAACCTAAAACACAA
Found at i:22155056 original size:15 final size:14
Alignment explanation
Indices: 22155031--22155085 Score: 58
Period size: 15 Copynumber: 3.8 Consensus size: 14
22155021 TAAAACACAA
*
22155031 AAACTTTAAACCTT
1 AAACTTAAAACCTT
22155045 AAACTTAAAAACCTT
1 AAACTT-AAAACCTT
*
22155060 AAACCCTAAAACCTT
1 AAA-CTTAAAACCTT
22155075 -AACTTTAAAAC
1 AAAC-TTAAAAC
22155086 TCTAACCCTA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
13 1 0.03
14 14 0.40
15 18 0.51
16 2 0.06
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (14 bp):
AAACTTAAAACCTT
Found at i:22155159 original size:22 final size:21
Alignment explanation
Indices: 22155100--22155296 Score: 107
Period size: 21 Copynumber: 9.0 Consensus size: 21
22155090 ACCCTAATCT
22155100 TAACCCTTAACTT-AAAAACC
1 TAACCCTTAACTTAAAAAACC
*
22155120 ATAACCCTTAAATT-AAAAACAC
1 -TAACCCTTAACTTAAAAAAC-C
22155142 TAACCCTTAACTTAAAAAATCCC
1 TAACCCTTAACTTAAAAAA--CC
* * * *
22155165 AAACCCTAAACCTAAAAAATCT
1 TAACCCTTAACTTAAAAAA-CC
* * * *
22155187 TAAACTTTAAAC-TCAAAACCC
1 TAACCCTT-AACTTAAAAAACC
*
22155208 TAAACCTTAAACTT-AAAAACC
1 TAACCCTT-AACTTAAAAAACC
* *
22155229 TTAAACTCTAAACTTAAAAAACC
1 -T-AACCCTTAACTTAAAAAACC
* * *
22155252 CAAACCTTAAACTT-AAAAACAT
1 TAACCCTT-AACTTAAAAAAC-C
*
22155274 TAAACCCTAAACTTAAAAAACC
1 T-AACCCTTAACTTAAAAAACC
22155296 T
1 T
22155297 CAAACCTCAA
Statistics
Matches: 135, Mismatches: 28, Indels: 25
0.72 0.15 0.13
Matches are distributed among these distances:
21 58 0.43
22 34 0.25
23 42 0.31
24 1 0.01
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (21 bp):
TAACCCTTAACTTAAAAAACC
Found at i:22155213 original size:44 final size:45
Alignment explanation
Indices: 22155150--22155310 Score: 186
Period size: 44 Copynumber: 3.6 Consensus size: 45
22155140 ACTAACCCTT
* * *
22155150 AACTTAAAAAATCCCAAACCCTAAACCTAAAAAATCTTAAACTTTA
1 AACTTAAAAAA-CCCAAACCTTAAACCTAAAAAACCTTAAACTCTA
* *
22155196 AAC-T-CAAAACCCTAAACCTTAAA-CTTAAAAACCTTAAACTCTA
1 AACTTAAAAAACCC-AAACCTTAAACCTAAAAAACCTTAAACTCTA
* * *
22155239 AACTTAAAAAACCCAAACCTTAAA-CTTAAAAACATTAAACCCTA
1 AACTTAAAAAACCCAAACCTTAAACCTAAAAAACCTTAAACTCTA
*
22155283 AACTTAAAAAACCTCAAACCTCAAACCT
1 AACTTAAAAAACC-CAAACCTTAAACCT
22155311 TAAACCTCAA
Statistics
Matches: 101, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
43 23 0.23
44 55 0.54
45 18 0.18
46 5 0.05
ACGTcount: A:0.52, C:0.27, G:0.00, T:0.22
Consensus pattern (45 bp):
AACTTAAAAAACCCAAACCTTAAACCTAAAAAACCTTAAACTCTA
Found at i:22155229 original size:15 final size:16
Alignment explanation
Indices: 22155209--22155240 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
22155199 TCAAAACCCT
22155209 AAACCTTAAACT-TAA
1 AAACCTTAAACTCTAA
22155224 AAACCTTAAACTCTAA
1 AAACCTTAAACTCTAA
22155240 A
1 A
22155241 CTTAAAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.53, C:0.22, G:0.00, T:0.25
Consensus pattern (16 bp):
AAACCTTAAACTCTAA
Found at i:22155301 original size:7 final size:7
Alignment explanation
Indices: 22155291--22155321 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
22155281 TAAACTTAAA
22155291 AAACCTC
1 AAACCTC
22155298 AAACCTC
1 AAACCTC
*
22155305 AAACCTT
1 AAACCTC
22155312 AAACCTC
1 AAACCTC
22155319 AAA
1 AAA
22155322 ACTCTAACTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.48, C:0.35, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCTC
Found at i:22155331 original size:44 final size:43
Alignment explanation
Indices: 22155150--22155328 Score: 132
Period size: 44 Copynumber: 4.0 Consensus size: 43
22155140 ACTAACCCTT
* * * *
22155150 AACTTAAAAAATCCCAAACC-CTAAACCTAAAAAATCTTAAACTTTA
1 AACTTAAAAAA-CCCAAACCTC-AAACTTAAAACA--TAAAACTCTA
* * * *
22155196 AAC-T-CAAAACCCTAAACCTTAAACTTAAAAACCTTAAACTCTA
1 AACTTAAAAAACCC-AAACCTCAAACTT-AAAACATAAAACTCTA
* * *
22155239 AACTTAAAAAACCCAAACCTTAAACTTAAAAACATTAAACCCTA
1 AACTTAAAAAACCCAAACCTCAAACTT-AAAACATAAAACTCTA
*
22155283 AACTTAAAAAACCTCAAACCTCAAACCTT-AAACCTCAAAACTCTA
1 AACTTAAAAAACC-CAAACCTCAAA-CTTAAAACAT-AAAACTCTA
22155328 A
1 A
22155329 CTTTTAATTT
Statistics
Matches: 112, Mismatches: 13, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
43 15 0.13
44 61 0.54
45 30 0.27
46 6 0.05
ACGTcount: A:0.51, C:0.27, G:0.00, T:0.22
Consensus pattern (43 bp):
AACTTAAAAAACCCAAACCTCAAACTTAAAACATAAAACTCTA
Found at i:22155379 original size:22 final size:21
Alignment explanation
Indices: 22155348--22155407 Score: 75
Period size: 22 Copynumber: 2.8 Consensus size: 21
22155338 TAAAAACCCC
* *
22155348 AAACTTAAACCTTGAACTTAA
1 AAACTTAAACCCTAAACTTAA
22155369 AAACTATAAACCCTAAACTTAA
1 AAACT-TAAACCCTAAACTTAA
*
22155391 AAACCCTAAACCCTAAA
1 AAA-CTTAAACCCTAAA
22155408 ACCTTAACTT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.15
22 28 0.82
23 1 0.03
ACGTcount: A:0.52, C:0.25, G:0.02, T:0.22
Consensus pattern (21 bp):
AAACTTAAACCCTAAACTTAA
Found at i:22155396 original size:15 final size:14
Alignment explanation
Indices: 22155376--22155428 Score: 54
Period size: 15 Copynumber: 3.6 Consensus size: 14
22155366 TAAAAACTAT
22155376 AAACCCTAAACTTAA
1 AAACCCTAAACTT-A
*
22155391 AAACCCTAAACCCTA
1 AAACCCTAAA-CTTA
*
22155406 AAA-CCTTAACTTTA
1 AAACCCTAAAC-TTA
22155420 AAACCCTAA
1 AAACCCTAA
22155429 CCCTTAAGTT
Statistics
Matches: 31, Mismatches: 4, Indels: 6
0.76 0.10 0.15
Matches are distributed among these distances:
13 1 0.03
14 10 0.32
15 18 0.58
16 2 0.06
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (14 bp):
AAACCCTAAACTTA
Found at i:22155401 original size:29 final size:29
Alignment explanation
Indices: 22155369--22155428 Score: 75
Period size: 29 Copynumber: 2.1 Consensus size: 29
22155359 TTGAACTTAA
* *
22155369 AAACTATAAACCCTAAACTTAAAAACCCT
1 AAACCATAAAACCTAAACTTAAAAACCCT
* * *
22155398 AAACCCTAAAACCTTAACTTTAAAACCCT
1 AAACCATAAAACCTAAACTTAAAAACCCT
22155427 AA
1 AA
22155429 CCCTTAAGTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (29 bp):
AAACCATAAAACCTAAACTTAAAAACCCT
Found at i:22157504 original size:13 final size:14
Alignment explanation
Indices: 22157486--22157514 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
22157476 TTTCTGCTTG
22157486 TTTTATTTTAT-TT
1 TTTTATTTTATCTT
22157499 TTTTATTTTATCTT
1 TTTTATTTTATCTT
22157513 TT
1 TT
22157515 ACATAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTATTTTATCTT
Found at i:22158308 original size:3 final size:3
Alignment explanation
Indices: 22158266--22158342 Score: 52
Period size: 3 Copynumber: 25.7 Consensus size: 3
22158256 TATTTCAGTC
* * * * *
22158266 TTA TTA CTA CTA TTA -TA TTA -TA TCA TTA ATA -TA GTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
22158311 TTA TTA TTGC TTA CCTTA TTA TTA TTA TTA TT
1 TTA TTA TT-A TTA --TTA TTA TTA TTA TTA TT
22158343 TACCTATTTA
Statistics
Matches: 60, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
2 6 0.10
3 49 0.82
4 2 0.03
5 3 0.05
ACGTcount: A:0.32, C:0.08, G:0.03, T:0.57
Consensus pattern (3 bp):
TTA
Found at i:22158353 original size:21 final size:21
Alignment explanation
Indices: 22158305--22158347 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22158295 TATAGTATTA
*
22158305 TTATTATTATTATTGCTTACC
1 TTATTATTATTATTACTTACC
*
22158326 TTATTATTATTATTATTTACC
1 TTATTATTATTATTACTTACC
22158347 T
1 T
22158348 ATTTATACCG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.12, G:0.02, T:0.60
Consensus pattern (21 bp):
TTATTATTATTATTACTTACC
Found at i:22158353 original size:24 final size:24
Alignment explanation
Indices: 22158302--22158348 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
22158292 TAATATAGTA
* *
22158302 TTATTATTATTATTATTGCTTACC
1 TTATTATTATTATTATTACCTACC
22158326 TTATTATTATTATTATTTACCTA
1 TTATTATTATTATTA-TTACCTA
22158349 TTTATACCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.28, C:0.11, G:0.02, T:0.60
Consensus pattern (24 bp):
TTATTATTATTATTATTACCTACC
Found at i:22158430 original size:25 final size:25
Alignment explanation
Indices: 22158402--22158462 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
22158392 TATTTTAAAC
*
22158402 TTTATAATTTATATATATACATATT
1 TTTATAATTTATATACATACATATT
* *
22158427 TTTATAATATATATACGTACATATT
1 TTTATAATTTATATACATACATATT
*
22158452 TTCATAATTTA
1 TTTATAATTTA
22158463 CTTGTATATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (25 bp):
TTTATAATTTATATACATACATATT
Found at i:22163861 original size:7 final size:7
Alignment explanation
Indices: 22163849--22163895 Score: 62
Period size: 7 Copynumber: 7.0 Consensus size: 7
22163839 CTGAGTCAAA
22163849 AAAAATG
1 AAAAATG
22163856 AAAAATG
1 AAAAATG
*
22163863 -AGAATG
1 AAAAATG
22163869 AAAAATG
1 AAAAATG
*
22163876 ATAAATG
1 AAAAATG
22163883 AAAAA-G
1 AAAAATG
22163889 AAAAATG
1 AAAAATG
22163896 GAGAGGCTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
6 11 0.32
7 23 0.68
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:22163874 original size:20 final size:20
Alignment explanation
Indices: 22163849--22163895 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
22163839 CTGAGTCAAA
* *
22163849 AAAAATGAAAAATGAGAATG
1 AAAAATGAAAAATGAAAAAG
*
22163869 AAAAATGATAAATGAAAAAG
1 AAAAATGAAAAATGAAAAAG
22163889 AAAAATG
1 AAAAATG
22163896 GAGAGGCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (20 bp):
AAAAATGAAAAATGAAAAAG
Found at i:22163894 original size:13 final size:14
Alignment explanation
Indices: 22163849--22163895 Score: 62
Period size: 13 Copynumber: 3.5 Consensus size: 14
22163839 CTGAGTCAAA
22163849 AAAAATGAAAAATG
1 AAAAATGAAAAATG
*
22163863 -AGAATGAAAAATG
1 AAAAATGAAAAATG
*
22163876 ATAAATGAAAAA-G
1 AAAAATGAAAAATG
22163889 AAAAATG
1 AAAAATG
22163896 GAGAGGCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
13 19 0.68
14 9 0.32
ACGTcount: A:0.68, C:0.00, G:0.17, T:0.15
Consensus pattern (14 bp):
AAAAATGAAAAATG
Found at i:22165203 original size:44 final size:43
Alignment explanation
Indices: 22165138--22166052 Score: 426
Period size: 44 Copynumber: 21.1 Consensus size: 43
22165128 AGAATTTCAG
* * *
22165138 ATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAG-A
* **
22165182 ATCTTATCTCCCTGAGATTACAGTGGAGTGGATT-AAAATAAAGA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCT--AGA
* * * * *
22165226 ATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATC-AG-
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTAGA
* * *
22165267 GTCTTATCTCCCTGAGATTACAGCGGAGTGGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAG-A
** ** *
22165311 ATCTTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAAGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCT--AGA
* * * * * *
22165355 ATTTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATC-AG-
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTAGA
* * **
22165396 GTCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAG-A
* * ** ** *
22165440 ATCCTGTCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGA
* * * * *
22165482 TGATTTTATCTCTCTGA-AGTTACAGTAGAGTAGA-TCATATC-AG-
1 --ATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGA-AGCTAGA
* * *
22165525 GTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAG-A
* ** ** *
22165569 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGA
* ** * * *
22165611 TGATCTTATCTCTCTGA-AGTTACAGCAGAGTAGATCGCATC-AG-
1 --ATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTAGA
* *** **
22165654 GTCTTATCTCCCTGAGATTACAGTGGAGTAGACCAAAAAATTTCAG-
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAG---ATTGAAGCT-AGA
* * * *
22165700 ATATTATCTCCCTGAGGTTATAGTGGAGCAGATTGAAGCTAGA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGA
* ** **
22165743 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATCCAAGAC-ACT
1 -ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG-CTAGA
* ** ** *
22165787 ATCCTATCTCCCTGA-AGTTACAGTGGAGCGGATT-AAAATAAAGG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTGAAGCT--AGA
* * * * * * *
22165831 ATCTCATCAT-TCT-AAAGTTACAGTAGAGTAGATCGCATC-AG-
1 ATCTTATC-TCCCTGAGA-TTACAGTGGAGTAGATTGAAGCTAGA
* * ** *
22165872 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAG-
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAG---CT-AGA
* * *
22165918 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGA
* * * *
22165961 GATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTAAAGCCAGGG
1 -ATCTTATCTCCCTGA-GATTACAGTGGAGTAGATTGAAGCTA-GA
* **
22166006 ATCTTATCTCCCTGAGATTATAACGGAGTAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAG-A
22166050 ATC
1 ATC
22166053 CTAACTATCT
Statistics
Matches: 649, Mismatches: 163, Indels: 118
0.70 0.18 0.13
Matches are distributed among these distances:
40 1 0.00
41 132 0.20
42 28 0.04
43 53 0.08
44 358 0.55
45 13 0.02
46 64 0.10
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.29
Consensus pattern (43 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGTAGATTGAAGCTAGA
Found at i:22165284 original size:85 final size:83
Alignment explanation
Indices: 22165136--22166025 Score: 330
Period size: 85 Copynumber: 10.3 Consensus size: 83
22165126 GAAGAATTTC
* ** ** * *
22165136 AGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGTAGAGCAGATCAAATC-AG--GTCTTATCTCCCTGAGATT
22165201 ACAGTGGAGTGGATTAAAATAA
63 ACAGTGGAGTGGATTAAAAT-A
* * **
22165223 AGAATCTTATCTCTCTGA-AGTTACAGTAGAGTAGATCGTATCAGGTCTTATCTCCCTGAGATTA
1 AG-ATCTTATCTCCCTGAGA-TTACAGTAGAGCAGATCAAATCAGGTCTTATCTCCCTGAGATTA
* **
22165287 CAGCGGAGTGGATTGAAGCT-
64 CAGTGGAGTGGATT-AAAATA
* * * * * *
22165307 AGTAATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAGGATTTTATCTCTCTGA-A
1 AG--ATCTTATCTCCCTGAGATTACAGTAGAGCAGA-TCAAAT-CAGG-TCTTATCTCCCTGAGA
* * *** *
22165371 GTTACAGTAGAGTAGA-TCGTATC
61 -TTACAGTGGAGTGGATTAAAATA
* ** * ** * * * *
22165394 AGGTCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGCTAGTAATCCTGTCTCCCTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGTAGAGCAGATCAAATC-AG--GTCTTATCTCCCTGAGATT
*
22165459 ACAGTGGAGCGGATTAAAATAA
63 ACAGTGGAGTGGATTAAAAT-A
* * * *
22165481 ATGATTTTATCTCTCTGA-AGTTACAGTAGAGTAGATCATATCAGGTCTTATCTCCCTGAGATTA
1 A-GATCTTATCTCCCTGAGA-TTACAGTAGAGCAGATCAAATCAGGTCTTATCTCCCTGAGATTA
* ** **
22165545 CAGCGGAGCAGATTGAAGCT-
64 CAGTGGAGTGGATT-AAAATA
* * * * * * *
22165565 AGTAATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGA-A
1 AG--ATCTTATCTCCCTGAGATTACAGTAGAGCAGA-TCAAAT-CA-GGTCTTATCTCCCTGAGA
** * *** *
22165629 GTTACAGCAGAGTAGA-TCGCATC
61 -TTACAGTGGAGTGGATTAAAATA
* * * * * * *
22165652 AGGTCTTATCTCCCTGAGATTACAGTGGAGTAGACCAAAAAATTTCAGATATTATCTCCCTGAGG
1 AGATCTTATCTCCCTGAGATTACAGTAGAGCAGATC---AAA--TCAGGTCTTATCTCCCTGAGA
* ** **
22165717 TTATAGTGGAGCAGATTGAAGCTA
61 TTACAGTGGAGTGGATT-AAAATA
** * ** *
22165741 GAGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCCAAGA-CACTATCCTATCTCCCTGA-AG
1 -AGATCTTATCTCCCTGAGATTACAGTAGAGCAGAT-CAA-ATCA-GGTCTTATCTCCCTGAGA-
*
22165804 TTACAGTGGAGCGGATTAAAATAA
61 TTACAGTGGAGTGGATTAAAAT-A
* * * * ** *
22165828 AGGATCTCATCAT-TCT-AAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTT
1 A-GATCTTATC-TCCCTGAGA-TTACAGTAGAGCAGATCAAATCAGGTCTTATCTCCCTGAGATT
* ** *
22165891 ACAGTGGAGTAGACCGAAGAATTTC
63 ACAGTGGAGTGGA-TTAA-AA--TA
* * * **
22165916 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGATG-T
1 AGATCTTATCTCCCTGAGATTACAGTAGAGCAGA-TCAAATCAG-G-TCTTATCTCCCTGA-GAT
** **
22165980 TACAGTGGAGCAGATTAAAGCCA
62 TACAGTGGAGTGGATTAAA-ATA
*
22166003 GGGATCTTATCTCCCTGAGATTA
1 -AGATCTTATCTCCCTGAGATTA
22166026 TAACGGAGTA
Statistics
Matches: 596, Mismatches: 149, Indels: 115
0.69 0.17 0.13
Matches are distributed among these distances:
83 1 0.00
84 8 0.01
85 217 0.36
86 35 0.06
87 126 0.21
88 140 0.23
89 7 0.01
90 60 0.10
91 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.29
Consensus pattern (83 bp):
AGATCTTATCTCCCTGAGATTACAGTAGAGCAGATCAAATCAGGTCTTATCTCCCTGAGATTACA
GTGGAGTGGATTAAAATA
Found at i:22165369 original size:129 final size:129
Alignment explanation
Indices: 22165134--22165681 Score: 934
Period size: 129 Copynumber: 4.2 Consensus size: 129
22165124 CCGAAGAATT
* * *
22165134 TCAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATTGAAGCTAGTAATCTTATCTCCCTGAGA
1 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* *
22165199 TTACAGTGGAGTGGATTAAAATAAAGAATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTA
** *
22165263 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGTGGATTGAAGCTAGTAATCTTATCTCCCTGAGA
1 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
*
22165328 TTACAGTGGAGCGGATTAAAATAAAGGATTTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTA
* *
22165392 TCAGGTCTTATCTCCCTGAGATTACAGCGGAACAGATTGAAGCTAGTAATCCTGTCTCCCTGAGA
1 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * *
22165457 TTACAGTGGAGCGGATTAAAATAAATGATTTTATCTCTCTGAAGTTACAGTAGAGTAGATCATA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTA
22165521 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
1 TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
* * *
22165586 TTACAGTGGAGCGGATTAAAATAAATGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGCA
66 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTA
*
22165650 TCAGGTCTTATCTCCCTGAGATTACAGTGGAG
1 TCAGGTCTTATCTCCCTGAGATTACAGCGGAG
22165682 TAGACCAAAA
Statistics
Matches: 398, Mismatches: 21, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
129 398 1.00
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (129 bp):
TCAGGTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGA
TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGTA
Found at i:22165815 original size:218 final size:219
Alignment explanation
Indices: 22165526--22165994 Score: 732
Period size: 218 Copynumber: 2.1 Consensus size: 219
22165516 TCATATCAGG
** *
22165526 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGCTACTAATCCTATCTCCCTGAGATTACA
* * *
22165591 GTGGAGCGGATTAAAATAAATGATCTTATC-TCTCTGAAGTTACAGCAGAGTAGATCGCATCAGG
66 GTGGAGCGGATTAAAATAAAGGATCTCATCAT-TCTAAAGTTACAGCAGAGTAGATCGCATCAGG
22165655 TCTTATCTCCCTGAGATTACAGTGGAGTAGACCAAAAAATTTCAGATATTATCTCCCTGAGGTTA
130 TCTTATCTCCCTGAGATTACAGTGGAGTAGACCAAAAAATTTCAGATATTATCTCCCTGAGGTTA
* *
22165720 TAGTGGAGCAGATTGAAGCTAGAGA
195 CAGTGGAGCAGATTGAAGCCAGAGA
*
22165745 TCTTATCTCCCTGAGATTACAGCGGAGTAGATCCAAGAC-ACT-ATCCTATCTCCCTGA-AGTTA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATCCAAG-CTACTAATCCTATCTCCCTGAGA-TTA
*
22165807 CAGTGGAGCGGATTAAAATAAAGGATCTCATCATTCTAAAGTTACAGTAGAGTAGATCGCATCAG
64 CAGTGGAGCGGATTAAAATAAAGGATCTCATCATTCTAAAGTTACAGCAGAGTAGATCGCATCAG
* * * *
22165872 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTTATCTCCCTGAGGTT
129 GTCTTATCTCCCTGAGATTACAGTGGAGTAGACCAAAAAATTTCAGATATTATCTCCCTGAGGTT
22165937 ACAGTGGAGCAGATTGAAGCCAGAGA
194 ACAGTGGAGCAGATTGAAGCCAGAGA
*
22165963 TCTTATCTCCCTGATG-TTACAGTGGAGCAGAT
1 TCTTATCTCCCTGA-GATTACAGCGGAGCAGAT
22165995 TAAAGCCAGG
Statistics
Matches: 230, Mismatches: 16, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
217 1 0.00
218 190 0.83
219 38 0.17
220 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (219 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATCCAAGCTACTAATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAGGATCTCATCATTCTAAAGTTACAGCAGAGTAGATCGCATCAGGT
CTTATCTCCCTGAGATTACAGTGGAGTAGACCAAAAAATTTCAGATATTATCTCCCTGAGGTTAC
AGTGGAGCAGATTGAAGCCAGAGA
Found at i:22166084 original size:88 final size:88
Alignment explanation
Indices: 22165917--22166086 Score: 198
Period size: 88 Copynumber: 1.9 Consensus size: 88
22165907 AAGAATTTCA
* ** * * * *
22165917 GATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGATGTTA
1 GATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAGCCAGAGATCCTAACTACCTGAAGTTA
*
22165982 CAGTGGAGCAGATTAAAGCCAGG
66 CAGTAGAGCAGATTAAAGCCAGG
* * * *
22166005 GATCTTATCTCCCTGAGATTATAACGGAGTAGATTGAAGCTAGTA-ATCCTAACTATCTGAAGTT
1 GATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAGCCAG-AGATCCTAACTACCTGAAGTT
**
22166069 ACAGTAGAGTGGATTAAA
65 ACAGTAGAGCAGATTAAA
22166087 ATAAAGGATC
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
88 66 0.99
89 1 0.01
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.28
Consensus pattern (88 bp):
GATCTTATCTCCCTGAGATTACAACGGAGCAGATTGAAGCCAGAGATCCTAACTACCTGAAGTTA
CAGTAGAGCAGATTAAAGCCAGG
Found at i:22167043 original size:13 final size:14
Alignment explanation
Indices: 22167025--22167053 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
22167015 TTTCTACTTG
22167025 TTTTATTTTAT-TT
1 TTTTATTTTATCTT
22167038 TTTTATTTTATCTT
1 TTTTATTTTATCTT
22167052 TT
1 TT
22167054 ACATAAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.14, C:0.03, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTATTTTATCTT
Found at i:22167887 original size:21 final size:21
Alignment explanation
Indices: 22167847--22167889 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
22167837 TAATATAGTA
*
22167847 TTATTATTATTATTGCTTACC
1 TTATTATTATTATTACTTACC
* *
22167868 TTATTATTATTTTTATTTACC
1 TTATTATTATTATTACTTACC
22167889 T
1 T
22167890 ATTTATACCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.23, C:0.12, G:0.02, T:0.63
Consensus pattern (21 bp):
TTATTATTATTATTACTTACC
Found at i:22167974 original size:25 final size:25
Alignment explanation
Indices: 22167946--22168006 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
22167936 TATTTAAAAC
*
22167946 TTTATAATTTATATATATACATATT
1 TTTATAATTTATATACATACATATT
* *
22167971 TTTATAATATATATACGTACATATT
1 TTTATAATTTATATACATACATATT
*
22167996 TTCATAATTTA
1 TTTATAATTTA
22168007 CTTGTATATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (25 bp):
TTTATAATTTATATACATACATATT
Found at i:22170817 original size:125 final size:125
Alignment explanation
Indices: 22170573--22171256 Score: 975
Period size: 125 Copynumber: 5.5 Consensus size: 125
22170563 AACATGCTAT
22170573 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTAGC-AG
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT-GCTAG
22170637 AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACTAAC
65 AAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACTAAC
* * * * *
22170698 TATAGCAAAAGTGCGTCCACGAGGGCGCGATTTCAGAAATTCTTCTCA-AATAGCATCCTGCTTG
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCTAG
* * * *
22170762 AAGCGTTTTTTATACTATTTGCTCAGAAACATCAACTCGAAATAATTT-TTTCAGGACCT-AC
65 AAGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGA-CTAAC
* *
22170823 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCATGGTAGA
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTAGA
* *
22170888 AGCGATTTTATACTATTTGCTCAGAAACGTAAACTCGAAATTATTTCTTCCAGGACCAAC
66 AGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACTAAC
* * *
22170948 TGTAGCAAAAGCGCGTCCATGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCATGGTAGA
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTAGA
* * *
22171013 AGCGATTTTATACTATTTACTCAGAAACGTAAACTCGAAATTATTTCTTCCAGGACCAAC
66 AGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACTAAC
* * * * *
22171073 TGTAGCAAAAGCGCGTCCATGAGGGCGCGATTTCACAAATTCTTCGCATATAGCATCCTGCTTGA
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTAGA
* *
22171138 AGCGTTTTTTATACTATTTGCTCAAAAACGTCAACTCGAAATTATTT-TTCCAGGACCT-AC
66 AGCG-ATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGA-CTAAC
* * * * * * *
22171198 TGTAGCAAAAGCGCGTACAAGTGGGCGCGACTGCAAAAATTCTTCTGATAAATCATCCT
1 TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT
22171257 ACTTTGATTT
Statistics
Matches: 505, Mismatches: 45, Indels: 18
0.89 0.08 0.03
Matches are distributed among these distances:
124 43 0.09
125 380 0.75
126 82 0.16
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (125 bp):
TGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTAGA
AGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGACTAAC
Found at i:22176540 original size:50 final size:50
Alignment explanation
Indices: 22176461--22176557 Score: 149
Period size: 50 Copynumber: 1.9 Consensus size: 50
22176451 AGATAGTAGA
* *
22176461 TTCAATAGAGTGAAAACATTTTATGGGATGCTTGACAAAGTGGACCATAC
1 TTCAATAGAGTGAAAACATCTTATGGGATGATTGACAAAGTGGACCATAC
* * *
22176511 TTCAATAGGGTGAAAACATCTTATTGGATGATTGATAAAGTGGACCA
1 TTCAATAGAGTGAAAACATCTTATGGGATGATTGACAAAGTGGACCA
22176558 CTGCATATGA
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.36, C:0.12, G:0.23, T:0.29
Consensus pattern (50 bp):
TTCAATAGAGTGAAAACATCTTATGGGATGATTGACAAAGTGGACCATAC
Found at i:22177821 original size:5 final size:5
Alignment explanation
Indices: 22177811--22177836 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
22177801 GAGATGAAAT
22177811 TCGAA TCGAA TCGAA TCGAA TCGAA T
1 TCGAA TCGAA TCGAA TCGAA TCGAA T
22177837 ATATTTGTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.23
Consensus pattern (5 bp):
TCGAA
Found at i:22178006 original size:19 final size:19
Alignment explanation
Indices: 22177982--22178025 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22177972 TAAAAGCAAC
22177982 ACAACATCAACCCAAATAA
1 ACAACATCAACCCAAATAA
* **
22178001 ACAACATGATTCCAAATAA
1 ACAACATCAACCCAAATAA
22178020 ACAACA
1 ACAACA
22178026 AAAATAATAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.57, C:0.27, G:0.02, T:0.14
Consensus pattern (19 bp):
ACAACATCAACCCAAATAA
Found at i:22180752 original size:89 final size:90
Alignment explanation
Indices: 22180649--22180859 Score: 363
Period size: 90 Copynumber: 2.4 Consensus size: 90
22180639 ATTAAAAATT
* *
22180649 AATTAATATAATAGTACAACAGCATAAATTAAAC-AAAAAAAGTATGTTAAACTA-CATTTTAAA
1 AATTAATATAATAGTACAATAGCATAAATTAAACTAAAAAAAGTATGTTAAACTATC-GTTTAAA
22180712 CTTTAAAGTTAGTTAATTGAAGCCTA
65 CTTTAAAGTTAGTTAATTGAAGCCTA
* *
22180738 AATTAATATAATAGTACAATAGCATAAATTAAACTAAAAAAAGTCTGTTAAGCTATCGTTTAAAC
1 AATTAATATAATAGTACAATAGCATAAATTAAACTAAAAAAAGTATGTTAAACTATCGTTTAAAC
22180803 TTTAAAGTTAGTTAATTGAAGCCTA
66 TTTAAAGTTAGTTAATTGAAGCCTA
22180828 AATTAATATAATAGTACAATAGCATAAATTAA
1 AATTAATATAATAGTACAATAGCATAAATTAA
22180860 TTAATTGAAG
Statistics
Matches: 116, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
89 33 0.28
90 82 0.71
91 1 0.01
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.32
Consensus pattern (90 bp):
AATTAATATAATAGTACAATAGCATAAATTAAACTAAAAAAAGTATGTTAAACTATCGTTTAAAC
TTTAAAGTTAGTTAATTGAAGCCTA
Found at i:22181186 original size:17 final size:17
Alignment explanation
Indices: 22181164--22181215 Score: 77
Period size: 17 Copynumber: 3.1 Consensus size: 17
22181154 TTTTCTCTAT
*
22181164 TAATATTATGTTATTAC
1 TAATATTATATTATTAC
*
22181181 TAATATTATATTAATAC
1 TAATATTATATTATTAC
*
22181198 TAATATTACATTATTAC
1 TAATATTATATTATTAC
22181215 T
1 T
22181216 TTGGGAATTG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (17 bp):
TAATATTATATTATTAC
Found at i:22181636 original size:19 final size:18
Alignment explanation
Indices: 22181612--22181673 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 18
22181602 GGAGAAGGAA
22181612 AATAGAGCGAAAATCATTC
1 AATAGAGC-AAAATCATTC
*
22181631 AATAGAGCAAAA-CAGATGC
1 AATAGAGCAAAATC--ATTC
22181650 AAATAGAGCTAAAATCATTC
1 -AATAGAGC-AAAATCATTC
22181670 AATA
1 AATA
22181674 ATTCAAAAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
17 1 0.03
18 4 0.11
19 15 0.42
20 11 0.31
21 4 0.11
22 1 0.03
ACGTcount: A:0.52, C:0.15, G:0.15, T:0.19
Consensus pattern (18 bp):
AATAGAGCAAAATCATTC
Found at i:22182220 original size:11 final size:10
Alignment explanation
Indices: 22182203--22182233 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
22182193 CTAAATTCAA
22182203 ATTTTTTTCG
1 ATTTTTTTCG
22182213 ATTTTTTTCG
1 ATTTTTTTCG
22182223 ATTTTTTTCG
1 ATTTTTTTCG
22182233 A
1 A
22182234 ATTGAATCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.13, C:0.10, G:0.10, T:0.68
Consensus pattern (10 bp):
ATTTTTTTCG
Found at i:22203645 original size:16 final size:16
Alignment explanation
Indices: 22203624--22203654 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22203614 AAGAGACGAT
*
22203624 AAATATGTATATATAA
1 AAATATGTACATATAA
22203640 AAATATGTACATATA
1 AAATATGTACATATA
22203655 TATGGGTGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.06, T:0.35
Consensus pattern (16 bp):
AAATATGTACATATAA
Found at i:22204231 original size:3 final size:3
Alignment explanation
Indices: 22204191--22204219 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
22204181 AACAAATAGG
22204191 TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22204220 ACAAAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:22206021 original size:46 final size:45
Alignment explanation
Indices: 22205898--22206195 Score: 230
Period size: 44 Copynumber: 6.8 Consensus size: 45
22205888 TAGGATAGTG
* * *
22205898 TCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT--CT
1 TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAT
* ** *
22205941 GGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
1 -TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTG-AAT
* * * *
22205988 TCTTTGGTCTGTTCCACTATAATCTCAGGGAGATAAGACCTG-A-
1 TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAT
* * * *
22206031 --TGTGATCTTCTCTACTGTAA-CTTCAGAGAGATAAGATC-----
1 TCTTTGATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTGAAT
* * * * * *
22206069 -CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-T-ACT
1 TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAT
*
22206111 ATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
1 -TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTG-AAT
* *
22206158 TCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGA
22206196 CCTGTATTAT
Statistics
Matches: 199, Mismatches: 40, Indels: 28
0.75 0.15 0.10
Matches are distributed among these distances:
39 26 0.13
40 2 0.01
41 28 0.14
44 70 0.35
45 1 0.01
46 69 0.35
47 3 0.02
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.32
Consensus pattern (45 bp):
TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAT
Found at i:22218990 original size:3 final size:3
Alignment explanation
Indices: 22218950--22218978 Score: 51
Period size: 3 Copynumber: 10.0 Consensus size: 3
22218940 AACAAATAGG
22218950 TAA TAA TAA TAA TAA TAA TAA TAA -AA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
22218979 ACAAAATAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 23 0.92
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:22230687 original size:3 final size:3
Alignment explanation
Indices: 22230679--22230728 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
22230669 CAGTTGGGGC
22230679 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
22230727 AT
1 AT
22230729 GTTAGAGAAG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:22244975 original size:18 final size:19
Alignment explanation
Indices: 22244948--22244984 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
22244938 GATTAATTAC
*
22244948 TTATTTAAAAT-ATTATTT
1 TTATTAAAAATAATTATTT
22244966 TTATTAAAAATAATTATTT
1 TTATTAAAAATAATTATTT
22244985 GTTTAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATTAAAAATAATTATTT
Found at i:22244990 original size:18 final size:18
Alignment explanation
Indices: 22244941--22244991 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 18
22244931 CGTTAAAGAT
*
22244941 TAATTACTTATTT-AAAA
1 TAATTATTTATTTAAAAA
*
22244958 T-ATTATTTTTATTAAAAA
1 TAATTATTTAT-TTAAAAA
*
22244976 TAATTATTTGTTTAAA
1 TAATTATTTATTTAAA
22244992 TAAAAACAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
16 7 0.25
17 3 0.11
18 10 0.36
19 8 0.29
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (18 bp):
TAATTATTTATTTAAAAA
Found at i:22251327 original size:48 final size:48
Alignment explanation
Indices: 22251245--22251338 Score: 138
Period size: 48 Copynumber: 2.0 Consensus size: 48
22251235 TTTCTTGGCT
* *
22251245 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATGGATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
22251293 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
22251339 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
47 4 0.10
48 38 0.90
ACGTcount: A:0.40, C:0.28, G:0.13, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:22253843 original size:48 final size:48
Alignment explanation
Indices: 22253761--22253854 Score: 131
Period size: 48 Copynumber: 2.0 Consensus size: 48
22253751 TTTCTTGGCT
*
22253761 TAAAAACGCCTAAGTCAGCCTAACTTCCACCAATAATA-GATTCAACCG
1 TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAA-AGGATTCAACCG
22253809 TAAAAACGCCTAAGTCAG-CTCAAC-TCGCAACAATAAAGGATTCAAC
1 TAAAAACGCCTAAGTCAGCCT-AACTTC-CAACAATAAAGGATTCAAC
22253855 AGAATTCCCT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
47 5 0.12
48 37 0.88
ACGTcount: A:0.41, C:0.28, G:0.12, T:0.19
Consensus pattern (48 bp):
TAAAAACGCCTAAGTCAGCCTAACTTCCAACAATAAAGGATTCAACCG
Found at i:22255120 original size:15 final size:16
Alignment explanation
Indices: 22255100--22255132 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
22255090 ATTTTCAATC
*
22255100 TTAAAATAAAC-CCCA
1 TTAAAACAAACTCCCA
22255115 TTAAAACAAACTCCCA
1 TTAAAACAAACTCCCA
22255131 TT
1 TT
22255133 TTCCATATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.48, C:0.27, G:0.00, T:0.24
Consensus pattern (16 bp):
TTAAAACAAACTCCCA
Found at i:22265509 original size:20 final size:18
Alignment explanation
Indices: 22265476--22265517 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 18
22265466 TAATTTTTAT
22265476 TTCCTCATAATTTTTGGTA
1 TTCCTCAT-ATTTTTGGTA
*
22265495 CTTCCTTATATTTTTGGTA
1 -TTCCTCATATTTTTGGTA
22265514 TTCC
1 TTCC
22265518 CTAAGAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 4 0.19
19 10 0.48
20 7 0.33
ACGTcount: A:0.17, C:0.19, G:0.10, T:0.55
Consensus pattern (18 bp):
TTCCTCATATTTTTGGTA
Found at i:22273974 original size:44 final size:44
Alignment explanation
Indices: 22273823--22273981 Score: 152
Period size: 44 Copynumber: 3.7 Consensus size: 44
22273813 AGCTTGTACA
* *
22273823 ATGCCAACGTCCCAGACGTGGTCTTACATGT-AATC-AAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCTCAA-ATCG
* * *
22273866 ATACC-ACTGTCCTAGACAGT-GTCTTACACG-AAA--TCATATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAATCTCAAAT-CG
* * *
22273908 ATGCTAATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCTCAAATCG
*
22273952 ATGCCAACGTCCCAAACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
22273982 AGATCACATA
Statistics
Matches: 91, Mismatches: 15, Indels: 19
0.73 0.12 0.15
Matches are distributed among these distances:
41 3 0.03
42 26 0.29
43 27 0.30
44 30 0.33
45 5 0.05
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (44 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAATCTCAAATCG
Found at i:22273979 original size:86 final size:85
Alignment explanation
Indices: 22273831--22273987 Score: 194
Period size: 86 Copynumber: 1.8 Consensus size: 85
22273821 CAATGCCAAC
* * * *
22273831 GTCCCAGACGTGGTCTTACATGTAATCAAATATCGATACCACTGTCCTAGACAGTGTCTTACACG
1 GTCCCAGACATGGTCTTACACGTAATCAAATATCGATACCACTGTCCCAAACAGTGTCTTACACG
22273896 AAATCATATACGATGCTAAT
66 AAATCATATACGATGCTAAT
* *
22273916 GTCCCAGACATGGTCTTACACGTAAATCTCAA-ATCGATGCCAAC-GTCCCAAAC-GTGGTCTTA
1 GTCCCAGACATGGTCTTACACGT-AATC-AAATATCGATACC-ACTGTCCCAAACAGT-GTCTTA
*
22273978 CACGAGATCA
62 CACGAAATCA
22273988 CATATCAGAA
Statistics
Matches: 61, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
85 23 0.38
86 34 0.56
87 4 0.07
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.25
Consensus pattern (85 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATCGATACCACTGTCCCAAACAGTGTCTTACACG
AAATCATATACGATGCTAAT
Found at i:22278269 original size:26 final size:26
Alignment explanation
Indices: 22278230--22278282 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22278220 TGCAATTAGC
22278230 AGATACATGACAAATC-CTGGTAAAAA
1 AGATACATGACAAATCTC-GGTAAAAA
* *
22278256 AGATATATGGCAAATCTCGGTAAAAA
1 AGATACATGACAAATCTCGGTAAAAA
22278282 A
1 A
22278283 CATTGGAAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.49, C:0.13, G:0.17, T:0.21
Consensus pattern (26 bp):
AGATACATGACAAATCTCGGTAAAAA
Found at i:22278901 original size:29 final size:29
Alignment explanation
Indices: 22278859--22278915 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
22278849 TTATGGAAAA
* * *
22278859 GATGGAGAACTTGTTCGTTGAGAGTTCAC
1 GATGAAGAACTTGTTCATTGAGAATTCAC
22278888 GATGAAGAACTTGTTCATTGAGAATTCA
1 GATGAAGAACTTGTTCATTGAGAATTCA
22278916 TGTCAAGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.30, C:0.12, G:0.26, T:0.32
Consensus pattern (29 bp):
GATGAAGAACTTGTTCATTGAGAATTCAC
Found at i:22279009 original size:62 final size:62
Alignment explanation
Indices: 22278933--22279056 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
22278923 GTGGAGATTG
22278933 TTAGAATTAAGTGAGTTGAATCCTTATTTAAATAAAATACAGTGGTAAAATAAAATAAAAGT
1 TTAGAATTAAGTGAGTTGAATCCTTATTTAAATAAAATACAGTGGTAAAATAAAATAAAAGT
22278995 TTAGAATTAAGTGAGTTGAATCCTTATTTAAATAAAATACAGTGGTAAAATAAAATAAAAGT
1 TTAGAATTAAGTGAGTTGAATCCTTATTTAAATAAAATACAGTGGTAAAATAAAATAAAAGT
22279057 AAAATCCATA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.48, C:0.05, G:0.15, T:0.32
Consensus pattern (62 bp):
TTAGAATTAAGTGAGTTGAATCCTTATTTAAATAAAATACAGTGGTAAAATAAAATAAAAGT
Found at i:22297716 original size:13 final size:13
Alignment explanation
Indices: 22297690--22297728 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
22297680 CAAAAAATTC
22297690 ATTTTTTAATAAAT
1 ATTTTTTAA-AAAT
22297704 ATTTTTTAAAAAT
1 ATTTTTTAAAAAT
22297717 -TTTATTTAAAAA
1 ATTT-TTTAAAAA
22297729 ATAATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 3 0.12
13 12 0.50
14 9 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTTTTAAAAAT
Found at i:22297729 original size:14 final size:14
Alignment explanation
Indices: 22297690--22297731 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
22297680 CAAAAAATTC
*
22297690 ATTTTTTAATAAAT
1 ATTTTTTAAAAAAT
22297704 ATTTTTT-AAAAAT
1 ATTTTTTAAAAAAT
22297717 -TTTATTTAAAAAAT
1 ATTT-TTTAAAAAAT
22297731 A
1 A
22297732 ATTAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 3 0.12
13 8 0.33
14 13 0.54
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTTTAAAAAAT
Found at i:22301921 original size:25 final size:25
Alignment explanation
Indices: 22301887--22301938 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
22301877 GATCGAGATG
22301887 ATAGAAAGAGTACTTCAAGTTATGC
1 ATAGAAAGAGTACTTCAAGTTATGC
22301912 ATAGAAAGAGTACTTCAAGTTATGC
1 ATAGAAAGAGTACTTCAAGTTATGC
22301937 AT
1 AT
22301939 TTATGCTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (25 bp):
ATAGAAAGAGTACTTCAAGTTATGC
Found at i:22304463 original size:3 final size:3
Alignment explanation
Indices: 22304455--22304483 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
22304445 AACAAATAGG
22304455 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
22304484 GGACTAAATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:22306492 original size:46 final size:45
Alignment explanation
Indices: 22306372--22306668 Score: 219
Period size: 44 Copynumber: 6.8 Consensus size: 45
22306362 TAGGATAGTG
* * *
22306372 TCTTCGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCT--CT
1 TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAT
* ** *
22306415 GGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
1 -TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTG-AAT
* * *
22306462 TCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATAAGACCTG-A-
1 TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAT
* * * * *
22306505 --TGTGATCTTCTCTACTGTAA-CTTTAGAGAGATAAGATC-----
1 TCTTTGATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCTGAAT
* * * * * *
22306543 -CTTTAATCCGCTCCATTGTAATCTCAAGGAGATAGGAT-T-ACT
1 TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAT
*
22306585 ATCTTTGATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAAT
1 -TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTG-AAT
* **
22306632 TCTTTGGTCTATTCCACTGTAATCTCAGGGAGATAAG
1 TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAG
22306669 TCCTGTATTA
Statistics
Matches: 197, Mismatches: 41, Indels: 28
0.74 0.15 0.11
Matches are distributed among these distances:
39 25 0.13
40 2 0.01
41 28 0.14
44 70 0.36
45 1 0.01
46 68 0.35
47 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (45 bp):
TCTTTGATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTGAAT
Found at i:22318816 original size:24 final size:24
Alignment explanation
Indices: 22318780--22318831 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
22318770 ATATAAAAGA
22318780 TATATAGACATAAACTA-AAATATG
1 TATATAGACATAAACTACAAA-ATG
* * *
22318804 TATATATATATAAATTACAAAATG
1 TATATAGACATAAACTACAAAATG
22318828 TATA
1 TATA
22318832 AAGTATATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 21 0.88
25 3 0.12
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.35
Consensus pattern (24 bp):
TATATAGACATAAACTACAAAATG
Found at i:22433139 original size:13 final size:13
Alignment explanation
Indices: 22433113--22433151 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
22433103 CAAAAAATTC
22433113 ATTTTTTAATAAAT
1 ATTTTTTAA-AAAT
22433127 ATTTTTTAAAAAT
1 ATTTTTTAAAAAT
22433140 -TTTATTTAAAAA
1 ATTT-TTTAAAAA
22433152 ATAATTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 3 0.12
13 12 0.50
14 9 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTTTTTAAAAAT
Found at i:22433152 original size:14 final size:14
Alignment explanation
Indices: 22433113--22433154 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
22433103 CAAAAAATTC
*
22433113 ATTTTTTAATAAAT
1 ATTTTTTAAAAAAT
22433127 ATTTTTT-AAAAAT
1 ATTTTTTAAAAAAT
22433140 -TTTATTTAAAAAAT
1 ATTT-TTTAAAAAAT
22433154 A
1 A
22433155 ATTAATAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 3 0.12
13 8 0.33
14 13 0.54
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (14 bp):
ATTTTTTAAAAAAT
Found at i:22437345 original size:25 final size:25
Alignment explanation
Indices: 22437311--22437362 Score: 104
Period size: 25 Copynumber: 2.1 Consensus size: 25
22437301 GATCGAGATG
22437311 ATAGAAAGAGTACTTCAAGTTATGC
1 ATAGAAAGAGTACTTCAAGTTATGC
22437336 ATAGAAAGAGTACTTCAAGTTATGC
1 ATAGAAAGAGTACTTCAAGTTATGC
22437361 AT
1 AT
22437363 TTATGCTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.40, C:0.12, G:0.19, T:0.29
Consensus pattern (25 bp):
ATAGAAAGAGTACTTCAAGTTATGC
Found at i:22439118 original size:18 final size:18
Alignment explanation
Indices: 22439091--22439125 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
22439081 TTTATTTACT
22439091 TGTTTGTTGG-TTTTCAA
1 TGTTTGTTGGCTTTTCAA
22439108 TGTTCTGTTGGCTTTTCA
1 TGTT-TGTTGGCTTTTCA
22439126 TTTTCAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 6 0.38
19 6 0.38
ACGTcount: A:0.09, C:0.11, G:0.23, T:0.57
Consensus pattern (18 bp):
TGTTTGTTGGCTTTTCAA
Found at i:22441065 original size:40 final size:40
Alignment explanation
Indices: 22441002--22441096 Score: 145
Period size: 40 Copynumber: 2.3 Consensus size: 40
22440992 TCTTTTTTTC
* *
22441002 TTTCTTTCCTTCCTTCCTTCTCTGTTTCGTTTTGCTCTCTG
1 TTTCTTT-CTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
*
22441043 TTTCTTTCTTTCTCCCTTCTCTGTTTTGTTTTGCTCTCTG
1 TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
22441083 TTTCTTTTCTTTCT
1 TTTC-TTTCTTTCT
22441097 TTCTTTGTCA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
40 34 0.68
41 16 0.32
ACGTcount: A:0.00, C:0.28, G:0.08, T:0.63
Consensus pattern (40 bp):
TTTCTTTCTTTCTCCCTTCTCTGTTTCGTTTTGCTCTCTG
Found at i:22441122 original size:5 final size:5
Alignment explanation
Indices: 22441106--22441176 Score: 101
Period size: 5 Copynumber: 14.2 Consensus size: 5
22441096 TTTCTTTGTC
*
22441106 ATATA TATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA TTAT-
1 ATATA -ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
22441156 AT-TA ATAATA ATATA ATATA A
1 ATATA AT-ATA ATATA ATATA A
22441177 AAACATAATT
Statistics
Matches: 60, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
3 1 0.02
4 3 0.05
5 47 0.78
6 9 0.15
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
ATATA
Found at i:22441851 original size:10 final size:10
Alignment explanation
Indices: 22441838--22441868 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
22441828 TTTTTTTTAG
22441838 TTTTTAATTT
1 TTTTTAATTT
22441848 TTTTTAATTT
1 TTTTTAATTT
22441858 TTTTATAATTT
1 TTTT-TAATTT
22441869 CCAACTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.70
11 6 0.30
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTAATTT
Found at i:22446233 original size:16 final size:16
Alignment explanation
Indices: 22446204--22446244 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
22446194 TCAAATTCAA
*
22446204 AACTTAAATTTAGTTC
1 AACTTAAATATAGTTC
*
22446220 AACTTCAATATAGTTC
1 AACTTAAATATAGTTC
22446236 AACTTAAAT
1 AACTTAAAT
22446245 TCAAAACTCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.41, C:0.15, G:0.05, T:0.39
Consensus pattern (16 bp):
AACTTAAATATAGTTC
Found at i:22454701 original size:2 final size:2
Alignment explanation
Indices: 22454694--22454723 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22454684 TACAATCAAA
22454694 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
22454724 GCCACTACAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:22463915 original size:91 final size:89
Alignment explanation
Indices: 22463760--22463940 Score: 292
Period size: 91 Copynumber: 2.0 Consensus size: 89
22463750 TCATGCAAAT
*
22463760 CCTTCTAAAATCTAAACCCGTTACTGCATTTACCCCATTTTCGTCTGCATCACATTGTCTTTACT
1 CCTTCTAAAATCTAAACCCGTTACTGCATTTACCCCATTTACGTCTGCATCACATTGTCTTTACT
22463825 CACAATAGGGGCATGCTCCAATTATC
66 CAC-AT-GGGGCATGCTCCAATTATC
* *
22463851 CCTTCTAAAATCTAAACCCGTTCCTGCATTTATCCCC-TTTACGTCTGCATCACATTGTTTTTAC
1 CCTTCTAAAATCTAAACCCGTTACTGCATTTA-CCCCATTTACGTCTGCATCACATTGTCTTTAC
*
22463915 TCACATTGGGCATGCTCCAATTATC
65 TCACATGGGGCATGCTCCAATTATC
22463940 C
1 C
22463941 AAAGTTCCAA
Statistics
Matches: 85, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
89 19 0.22
90 2 0.02
91 60 0.71
92 4 0.05
ACGTcount: A:0.24, C:0.30, G:0.10, T:0.35
Consensus pattern (89 bp):
CCTTCTAAAATCTAAACCCGTTACTGCATTTACCCCATTTACGTCTGCATCACATTGTCTTTACT
CACATGGGGCATGCTCCAATTATC
Found at i:22466463 original size:35 final size:37
Alignment explanation
Indices: 22466418--22466487 Score: 126
Period size: 36 Copynumber: 1.9 Consensus size: 37
22466408 AGAACAACTA
22466418 AATTATACAAAACTT-AAAGAAATCATGACACTGGTT
1 AATTATACAAAACTTAAAAGAAATCATGACACTGGTT
22466454 AATT-TACAAAACTTAAAAGAAATCATGACACTGG
1 AATTATACAAAACTTAAAAGAAATCATGACACTGG
22466488 AAGCTATATT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
35 10 0.30
36 23 0.70
ACGTcount: A:0.49, C:0.14, G:0.11, T:0.26
Consensus pattern (37 bp):
AATTATACAAAACTTAAAAGAAATCATGACACTGGTT
Found at i:22467659 original size:28 final size:28
Alignment explanation
Indices: 22467619--22467703 Score: 170
Period size: 28 Copynumber: 3.0 Consensus size: 28
22467609 AGAGAATTCA
22467619 AGTTAATAGAGCGTATGTATACTTACCT
1 AGTTAATAGAGCGTATGTATACTTACCT
22467647 AGTTAATAGAGCGTATGTATACTTACCT
1 AGTTAATAGAGCGTATGTATACTTACCT
22467675 AGTTAATAGAGCGTATGTATACTTACCT
1 AGTTAATAGAGCGTATGTATACTTACCT
22467703 A
1 A
22467704 TAATTGATAT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.33, C:0.14, G:0.18, T:0.35
Consensus pattern (28 bp):
AGTTAATAGAGCGTATGTATACTTACCT
Found at i:22469779 original size:16 final size:15
Alignment explanation
Indices: 22469740--22469781 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
22469730 ACACCTTAAT
* *
22469740 CTTAATCTTTCGGTA
1 CTTAATTTTTCAGTA
22469755 CTTAATTTTTCAGTA
1 CTTAATTTTTCAGTA
*
22469770 CTTAAATTTTCA
1 CTTAATTTTTCA
22469782 ATTGATCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.07, T:0.50
Consensus pattern (15 bp):
CTTAATTTTTCAGTA
Found at i:22472749 original size:13 final size:14
Alignment explanation
Indices: 22472699--22472749 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 14
22472689 TGTAAAATTG
**
22472699 ATTTATTAAAAATT
1 ATTTATTAATTATT
* *
22472713 AATTGTTAA-TATT
1 ATTTATTAATTATT
22472726 ATTTATTAATTATT
1 ATTTATTAATTATT
22472740 -TTTATTAATT
1 ATTTATTAATT
22472750 TAATCTTAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
13 20 0.65
14 11 0.35
ACGTcount: A:0.39, C:0.00, G:0.02, T:0.59
Consensus pattern (14 bp):
ATTTATTAATTATT
Found at i:22474422 original size:6 final size:6
Alignment explanation
Indices: 22474411--22474436 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
22474401 TACGTTGTTG
22474411 GGGGCA GGGGCA GGGGCA GGGGCA GG
1 GGGGCA GGGGCA GGGGCA GGGGCA GG
22474437 CTCTTTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.15, G:0.69, T:0.00
Consensus pattern (6 bp):
GGGGCA
Found at i:22492431 original size:17 final size:17
Alignment explanation
Indices: 22492409--22492448 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
22492399 GGCTAGGTAC
* *
22492409 CTCTTTGGGTAAGGCTA
1 CTCTTTGGGCAAGGCAA
*
22492426 CTCTTTGGGCGAGGCAA
1 CTCTTTGGGCAAGGCAA
22492443 CTCTTT
1 CTCTTT
22492449 TTGGATGAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.15, C:0.23, G:0.28, T:0.35
Consensus pattern (17 bp):
CTCTTTGGGCAAGGCAA
Found at i:22494703 original size:43 final size:43
Alignment explanation
Indices: 22494633--22494751 Score: 143
Period size: 43 Copynumber: 2.8 Consensus size: 43
22494623 GGCTCGTACA
* * * * * *
22494633 ATGCCAACGTCCCAGATGTGGTATTACATGTAATCACAGATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAAATCG
* *
22494676 ATGCCACCGTCCTAGACAG-GGTCTTACACGAAAACACAAATCG
1 ATGCCAACGTCCCAGAC-GTGGTCTTACACGAAAACACAAATCG
22494719 ATGCCAACGTCCCAGACGTGGTCTTACAC-AAAA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGAAAA
22494752 TAGATATCGG
Statistics
Matches: 64, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 5 0.08
43 58 0.91
44 1 0.02
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAAATCG
Found at i:22502324 original size:43 final size:43
Alignment explanation
Indices: 22502276--22502404 Score: 118
Period size: 43 Copynumber: 3.0 Consensus size: 43
22502266 GGCTCGTACA
* * * * * *
22502276 ATGCCAACGTCCCAGATATGGTATTACATGTAATCACAGATCG
1 ATGCCAACGTCCCAGACAGGGTATTACACGAAAACACAAATCG
* *
22502319 ATGCC-ACTGTCCTAGACAGGGTCTTACACGAAAACACAAATCG
1 ATGCCAAC-GTCCCAGACAGGGTATTACACGAAAACACAAATCG
* * * *
22502362 ATGCCAACGTCCTAGAC-GTGGTCTTACACAAAAACACATATCG
1 ATGCCAACGTCCCAGACAG-GGTATTACACGAAAACACAAATCG
22502405 GAAATCCTAT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 3 0.04
43 68 0.93
44 2 0.03
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACAGGGTATTACACGAAAACACAAATCG
Found at i:22504530 original size:19 final size:19
Alignment explanation
Indices: 22504506--22504554 Score: 53
Period size: 19 Copynumber: 2.6 Consensus size: 19
22504496 CTTACGCTCT
* * *
22504506 AGGATGCACTTGGTGTGCC
1 AGGATGCACTTCGAGCGCC
*
22504525 AGGATGCGCTTCGAGCGCC
1 AGGATGCACTTCGAGCGCC
*
22504544 AGTATGCACTT
1 AGGATGCACTT
22504555 TACATGTCAG
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.18, C:0.24, G:0.33, T:0.24
Consensus pattern (19 bp):
AGGATGCACTTCGAGCGCC
Found at i:22515026 original size:14 final size:14
Alignment explanation
Indices: 22515009--22515056 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
22514999 TATTAATATA
* *
22515009 TATTTACTTTTTTT
1 TATTTACCTTTATT
22515023 TATTTACCTTTATT
1 TATTTACCTTTATT
22515037 TATTT-CCATTTATT
1 TATTTACC-TTTATT
*
22515051 TTTTTA
1 TATTTA
22515057 GATACCTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 27 0.93
ACGTcount: A:0.19, C:0.10, G:0.00, T:0.71
Consensus pattern (14 bp):
TATTTACCTTTATT
Found at i:22521919 original size:53 final size:53
Alignment explanation
Indices: 22521839--22521942 Score: 165
Period size: 53 Copynumber: 2.0 Consensus size: 53
22521829 TTAAACATTT
* * *
22521839 ACAAAAATATCACTTTATTAAAAAAAA-TTAAAGACATTTTTTGGATGTAAAAA
1 ACAAAAATACCACTTTATTAAAAAAAATTTAAAAACATTTTTTAGAT-TAAAAA
22521892 ACAAAAATACCACTTTATTAAAAAAAATTTAAAAACATTTTTTAGATTAAA
1 ACAAAAATACCACTTTATTAAAAAAAATTTAAAAACATTTTTTAGATTAAA
22521943 TTAGTGTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
53 30 0.64
54 17 0.36
ACGTcount: A:0.54, C:0.09, G:0.05, T:0.33
Consensus pattern (53 bp):
ACAAAAATACCACTTTATTAAAAAAAATTTAAAAACATTTTTTAGATTAAAAA
Found at i:22525147 original size:16 final size:17
Alignment explanation
Indices: 22525126--22525158 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
22525116 AATTCACTTG
22525126 ATATATTGAAT-TTTTT
1 ATATATTGAATATTTTT
22525142 ATATATTGAATATTTTT
1 ATATATTGAATATTTTT
22525159 CAAAAAATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (17 bp):
ATATATTGAATATTTTT
Found at i:22527775 original size:13 final size:13
Alignment explanation
Indices: 22527757--22527781 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22527747 ATTTATCATA
22527757 TAAAATAAATTTT
1 TAAAATAAATTTT
22527770 TAAAATAAATTT
1 TAAAATAAATTT
22527782 ATTATAAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (13 bp):
TAAAATAAATTTT
Found at i:22528048 original size:18 final size:19
Alignment explanation
Indices: 22528012--22528050 Score: 55
Period size: 18 Copynumber: 2.1 Consensus size: 19
22528002 ACTAAATAAT
22528012 AAAATATAATAATTATTTA
1 AAAATATAATAATTATTTA
22528031 AAAATAT-AT-ATTACTTTA
1 AAAATATAATAATTA-TTTA
22528049 AA
1 AA
22528051 TTTTAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 4 0.21
18 8 0.42
19 7 0.37
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (19 bp):
AAAATATAATAATTATTTA
Found at i:22529200 original size:12 final size:12
Alignment explanation
Indices: 22529183--22529207 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22529173 AATTTATGCT
22529183 TATGATATGTGA
1 TATGATATGTGA
22529195 TATGATATGTGA
1 TATGATATGTGA
22529207 T
1 T
22529208 GCATATTGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.00, G:0.24, T:0.44
Consensus pattern (12 bp):
TATGATATGTGA
Found at i:22531078 original size:20 final size:20
Alignment explanation
Indices: 22531050--22531088 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
22531040 ATGATTGATG
* *
22531050 TATGGTGTGATTGGTGGTTC
1 TATGATGTGATTAGTGGTTC
22531070 TATGATGTGATTAGTGGTT
1 TATGATGTGATTAGTGGTT
22531089 GGTGAGGAGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.03, G:0.36, T:0.46
Consensus pattern (20 bp):
TATGATGTGATTAGTGGTTC
Found at i:22541456 original size:6 final size:6
Alignment explanation
Indices: 22541445--22541480 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
22541435 ACAGCAAAGG
22541445 AGATGA AGATGA AGATGA AGATGA AGATGA AGATGA
1 AGATGA AGATGA AGATGA AGATGA AGATGA AGATGA
22541481 GTACTTTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (6 bp):
AGATGA
Found at i:22546100 original size:12 final size:12
Alignment explanation
Indices: 22546085--22546111 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
22546075 ATATACATCC
22546085 AAATATACCTAT
1 AAATATACCTAT
22546097 AAATATACCTAT
1 AAATATACCTAT
22546109 AAA
1 AAA
22546112 GATGTGATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.30
Consensus pattern (12 bp):
AAATATACCTAT
Found at i:22557215 original size:6 final size:6
Alignment explanation
Indices: 22557176--22557202 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
22557166 TACTCACAAG
22557176 ATAAAA ATAAAA ATAAAA ATAAAA ATA
1 ATAAAA ATAAAA ATAAAA ATAAAA ATA
22557203 TATTAAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
ATAAAA
Found at i:22557979 original size:18 final size:17
Alignment explanation
Indices: 22557956--22557989 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
22557946 GATTTCACCA
*
22557956 TTTTATTATTTTATAATT
1 TTTTATAATTTT-TAATT
22557974 TTTTATAATTTTTAAT
1 TTTTATAATTTTTAAT
22557990 GATTAAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (17 bp):
TTTTATAATTTTTAATT
Found at i:22563898 original size:21 final size:22
Alignment explanation
Indices: 22563872--22563920 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
22563862 AGAAAAACTT
22563872 ATATTAAGTAAA-A-ATTTAAA
1 ATATTAAGTAAACATATTTAAA
*
22563892 ATAATT-ATTAAACATATTTAAA
1 AT-ATTAAGTAAACATATTTAAA
22563914 ATATTAA
1 ATATTAA
22563921 ATGTTGAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 6
0.77 0.03 0.19
Matches are distributed among these distances:
20 7 0.29
21 7 0.29
22 10 0.42
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.39
Consensus pattern (22 bp):
ATATTAAGTAAACATATTTAAA
Found at i:22567096 original size:48 final size:48
Alignment explanation
Indices: 22566889--22567624 Score: 857
Period size: 48 Copynumber: 14.9 Consensus size: 48
22566879 TACTCCCCAC
* * *
22566889 CACCACCCAAGGAGCCTTACAAGTATAAGTCTCCACCACCTCCTCCACCAGT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCA-C-CC-CCACCA-T
** * * * * *
22566941 GCATTATCCTCCA-CCCCCTTACGAGTACAAGTCTCCTCCGCCACCCCCGCCAT
1 -CACCA-CC-CAAGCACCCTTACAAGTACAAG--T-CTCCACCACCCCCACCAT
* *
22566994 CACCACCCAAGCATCCC-TATAAGTACAAGTCT---CCACCTCCACCAT
1 CACCACCCAAGCA-CCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
22567039 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
* *
22567087 CACCACCCAAGCACCCCTACAAGTACAAGTCTCCTCCACCACCTCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAG--T-CTCCACCACCCCCACCAT
* *
22567138 CACCACCCAAGCACCCCTACAAGTATAAGTCTCCACCACCCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
*
22567186 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCACCACCACCACCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCA-C-CC-CCACCAT
* * *
22567237 CACCACCCAAGCACCCCTACAAGTACAAGTCTCCTCCACCTCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
* *
22567285 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCACCACCACCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
* *
22567333 CACCACCCAAGCACCCCTACAAGTACAAGTCTCCTCCACCCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
22567381 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCACCTCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCA-C-CC-CCACCAT
22567432 CACCACCCAAGCACCCTTACAAGTACAAGTCT---CCACCCCCACCAT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
22567477 CACCACCCAAGCATCCC-TACAAGTACAAGTCTCCACCCCCACCCCCACCCCCACCCT
1 CACCACCCAAGCA-CCCTTACAAGTACAAGTCTCCA---CCACCCCCA---CCA---T
* *
22567534 CACCACCCAAGCACCCCTACAAGTACAAGTCT---CCACCCCCACCCT
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
* *
22567579 CACCACCCAAGCACCCTTACAAGTATAAGTCTCCCCCACCACCCAC
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACC-CCCAC
22567625 TCCAGTCTAC
Statistics
Matches: 601, Mismatches: 44, Indels: 80
0.83 0.06 0.11
Matches are distributed among these distances:
44 3 0.00
45 104 0.17
46 5 0.01
47 1 0.00
48 235 0.39
49 10 0.02
50 8 0.01
51 157 0.26
52 6 0.01
53 4 0.01
54 23 0.04
55 4 0.01
56 5 0.01
57 36 0.06
ACGTcount: A:0.29, C:0.49, G:0.07, T:0.14
Consensus pattern (48 bp):
CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCACCAT
Found at i:22567159 original size:99 final size:98
Alignment explanation
Indices: 22566889--22567621 Score: 911
Period size: 99 Copynumber: 7.4 Consensus size: 98
22566879 TACTCCCCAC
* * * * * ** *
22566889 CACCACCCAAGGAGCCTTACAAGTATAAGTCTCCACCACCTCCTCCACCAGTGCATTATCCTCCA
1 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCTCCACCACCTCCACCA-T-CACCA-CC-CAA
* *
22566954 -C-CCCCTTACGAGTACAAGTCTCCTCCGCCACCCCCGCCAT
62 GCACCCC-TACAAGTACAAG--T-CTCC-CCACCCCCACCAT
* *
22566994 CACCACCCAAGCATCCCTATAAGTACAAG--T-CT---CCACCTCCACCATCACCACCCAAGCAC
1 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCAC
*
22567053 CCTTACAAGTACAAGTCTCCACCACCCCCACCAT
66 CCCTACAAGTACAAGTCTCC-CCACCCCCACCAT
* *
22567087 CACCACCCAAGCACCCCTACAAGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCAC
1 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCAC
*
22567152 CCCTACAAGTATAAGTCTCCACCACCCCCACCAT
66 CCCTACAAGTACAAGTCTCC-CCACCCCCACCAT
* *
22567186 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCACCACCACCACCACCATCACCACCCAAGCAC
1 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCAC
*
22567251 CCCTACAAGTACAAGTCTCCTCCACCTCCACCAT
66 CCCTACAAGTACAAGTCTCC-CCACCCCCACCAT
*
22567285 CACCACCCAAGCATCCTTACAAGTACAAG--T-CTCCACCACCACCACCATCACCACCCAAGCAC
1 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCAC
22567347 CCCTACAAGTACAAGTCTCCTCCACCCCCACCAT
66 CCCTACAAGTACAAGTCTCC-CCACCCCCACCAT
* *
22567381 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCACCTCCACCATCACCACCCAAGCAC
1 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCAC
*
22567446 CCTTACAAGTACAAGTCT--CCACCCCCACCAT
66 CCCTACAAGTACAAGTCTCCCCACCCCCACCAT
* * * *
22567477 CACCACCCAAGCATCCCTACAAGTACAAGTCTCCACCCCCACCCCCACCCCCACCCTCACCACCC
1 CACCACCCAAGCATCCTTACAAGTACAAGTCT---CCTCCA---CCACCTCCACCATCACCACCC
*
22567542 AAGCACCCCTACAAGTACAAGTCT--CCACCCCCACCCT
60 AAGCACCCCTACAAGTACAAGTCTCCCCACCCCCACCAT
* * *
22567579 CACCACCCAAGCACCCTTACAAGTATAAGTCTCCCCCACCACC
1 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCTCCACCACC
22567622 CACTCCAGTC
Statistics
Matches: 570, Mismatches: 41, Indels: 43
0.87 0.06 0.07
Matches are distributed among these distances:
93 43 0.08
94 1 0.00
95 3 0.01
96 156 0.27
97 7 0.01
98 2 0.00
99 249 0.44
102 84 0.15
103 1 0.00
105 24 0.04
ACGTcount: A:0.29, C:0.49, G:0.07, T:0.14
Consensus pattern (98 bp):
CACCACCCAAGCATCCTTACAAGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCAC
CCCTACAAGTACAAGTCTCCCCACCCCCACCAT
Found at i:22567281 original size:147 final size:144
Alignment explanation
Indices: 22566889--22567624 Score: 877
Period size: 147 Copynumber: 5.0 Consensus size: 144
22566879 TACTCCCCAC
* * * ** *
22566889 CACCACCCAAGGAGCCTTACAAGTATAAGTCTCCACCACCTCCTCCACCAGTGCATTATCCTCCA
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACC-CC-CCACCA-T-CACCA-CC-CAA
* * * *
22566954 -C-CCCCTTACGAGTACAAGTCTCCTCCGCCACCCCCGCCATCACCACCCAAGCATCCC-TATAA
60 GCACCCC-TACAAGTACAAGTCTCCT---CCACCTCCACCATCACCACCCAAGCA-CCCTTACAA
*
22567016 GTACAAGTCT--CCACCTCCACCAT
120 GTACAAGTCTCCCCACCCCCACCAT
22567039 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCA-CCCCCACCATCACCACCCAAGCACCC
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCCACCATCACCACCCAAGCACCC
* *
22567103 CTACAAGTACAAGTCTCCTCCACCACCTCCACCATCACCACCCAAGCACCCCTACAAGTATAAGT
66 CTACAAGTACAAGTCTCCT---CCACCTCCACCATCACCACCCAAGCACCCTTACAAGTACAAGT
22567168 CTCCACCACCCCCACCAT
128 CTCC-CCACCCCCACCAT
*
22567186 CACCACCCAAGCATCCTTACAAGTACAAGTCTCCACCACCACCACCACCATCACCACCCAAGCAC
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACC-CC-CCACCATCACCACCCAAGCAC
*
22567251 CCCTACAAGTACAAGTCTCCTCCACCTCCACCATCACCACCCAAGCATCCTTACAAGTACAAGTC
64 CCCTACAAGTACAAGTCTCCTCCACCTCCACCATCACCACCCAAGCACCCTTACAAGTACAAGTC
*
22567316 TCCACCACCACCACCAT
129 TCC-CCACCCCCACCAT
* *
22567333 CACCACCCAAGCACCCCTACAAGTACAAGTCTCCTCCA-CCCCCACCATCACCACCCAAGCACCC
1 CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCCACCATCACCACCCAAGCACCC
* *
22567397 TTACAAGTACAAGTCTCCACCACCACCTCCACCATCACCACCCAAGCACCCTTACAAGTACAAGT
66 CTACAAGTACAAGTCT---CCTCCACCTCCACCATCACCACCCAAGCACCCTTACAAGTACAAGT
22567462 CT--CCACCCCCACCAT
128 CTCCCCACCCCCACCAT
*
22567477 CACCACCCAAGCATCCC-TACAAGTACAAGTCTCCACCCCCACCCCCACCCCCACCCTCACCACC
1 CACCACCCAAGCA-CCCTTACAAGTACAAGTCTCCA---CCA----C-CCCCCACCATCACCACC
* *
22567541 CAAGCACCCCTACAAGTACAAG--T-CTCCACCCCCACCCTCACCACCCAAGCACCCTTACAAGT
57 CAAGCACCCCTACAAGTACAAGTCTCCTCCACCTCCACCATCACCACCCAAGCACCCTTACAAGT
*
22567603 ATAAGTCTCCCCCACCACCCAC
122 ACAAGTCT-CCCCACC-CCCAC
22567625 TCCAGTCTAC
Statistics
Matches: 528, Mismatches: 32, Indels: 51
0.86 0.05 0.08
Matches are distributed among these distances:
143 5 0.01
144 139 0.26
145 12 0.02
146 2 0.00
147 239 0.45
148 3 0.01
149 3 0.01
150 82 0.16
151 6 0.01
153 37 0.07
ACGTcount: A:0.29, C:0.49, G:0.07, T:0.14
Consensus pattern (144 bp):
CACCACCCAAGCACCCTTACAAGTACAAGTCTCCACCACCCCCCACCATCACCACCCAAGCACCC
CTACAAGTACAAGTCTCCTCCACCTCCACCATCACCACCCAAGCACCCTTACAAGTACAAGTCTC
CCCACCCCCACCAT
Found at i:22567527 original size:5 final size:6
Alignment explanation
Indices: 22567509--22567542 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
22567499 GTACAAGTCT
*
22567509 CCACCC CCACCC CCACCC CCACCC TCACCAC CCA
1 CCACCC CCACCC CCACCC CCACCC CCACC-C CCA
22567543 AGCACCCCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 22 0.88
7 3 0.12
ACGTcount: A:0.21, C:0.76, G:0.00, T:0.03
Consensus pattern (6 bp):
CCACCC
Found at i:22567571 original size:39 final size:40
Alignment explanation
Indices: 22567526--22567613 Score: 113
Period size: 45 Copynumber: 2.1 Consensus size: 40
22567516 CACCCCCACC
22567526 CCCACCCTCACCACCCAAGCACCCCTACAAGTACAAGTCT
1 CCCACCCTCACCACCCAAGCACCCCTACAAGTACAAGTCT
* *
22567566 CCACCCCCACCCTCACCACCCAAGCACCCTTACAAGTATAAGTCT
1 -----CCCACCCTCACCACCCAAGCACCCCTACAAGTACAAGTCT
22567611 CCC
1 CCC
22567614 CCACCACCCA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
40 3 0.07
45 38 0.93
ACGTcount: A:0.28, C:0.51, G:0.07, T:0.14
Consensus pattern (40 bp):
CCCACCCTCACCACCCAAGCACCCCTACAAGTACAAGTCT
Found at i:22567571 original size:57 final size:57
Alignment explanation
Indices: 22567464--22567587 Score: 212
Period size: 57 Copynumber: 2.2 Consensus size: 57
22567454 GTACAAGTCT
*
22567464 CCACCCCCACCATCACCACCCAAGCATCCCTACAAGTACAAGTCTCCACCCCCACCC
1 CCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCCCCACCC
*
22567521 CCACCCCCACCCTCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCCCCACCC
1 CCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCCCCACCC
*
22567578 TCACCACCCA
1 CCACC-CCCA
22567588 AGCACCCTTA
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
57 59 0.94
58 4 0.06
ACGTcount: A:0.27, C:0.58, G:0.05, T:0.10
Consensus pattern (57 bp):
CCACCCCCACCATCACCACCCAAGCACCCCTACAAGTACAAGTCTCCACCCCCACCC
Found at i:22567664 original size:36 final size:37
Alignment explanation
Indices: 22567594--22567696 Score: 97
Period size: 36 Copynumber: 2.8 Consensus size: 37
22567584 CCCAAGCACC
*
22567594 CTTACAAGTATAAGTCTCC-CCCACCACCCACTCCAG
1 CTTACAAATATAAGTCTCCTCCCACCACCCACTCCAG
*
22567630 -TCTACAAATATAAGTCTCCTCCC-CCTCCTC-CTCCAG
1 CT-TACAAATATAAGTCTCCTCCCACCACC-CACTCCAG
* * *
22567666 CTTACTATTACAAGTCTCCTCCTCCACCACC
1 CTTACAAATATAAGTCTCCT-C-CCACCACC
22567697 ACCCCATTAT
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
35 1 0.02
36 41 0.76
37 6 0.11
38 2 0.04
39 4 0.07
ACGTcount: A:0.24, C:0.45, G:0.06, T:0.25
Consensus pattern (37 bp):
CTTACAAATATAAGTCTCCTCCCACCACCCACTCCAG
Found at i:22568235 original size:23 final size:22
Alignment explanation
Indices: 22568191--22568237 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
22568181 TTAATTTAAT
*
22568191 TAAAAATAAAAAAAATCACTTA
1 TAAAAATAAAAAAAATAACTTA
**
22568213 TAAAAATAAAATTAATAACCTTA
1 TAAAAATAAAAAAAATAA-CTTA
22568236 TA
1 TA
22568238 TATTCTTACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.64, C:0.09, G:0.00, T:0.28
Consensus pattern (22 bp):
TAAAAATAAAAAAAATAACTTA
Found at i:22574340 original size:73 final size:73
Alignment explanation
Indices: 22574233--22574371 Score: 185
Period size: 73 Copynumber: 1.9 Consensus size: 73
22574223 TTCTCGGTAA
** * *
22574233 GCGCCGCAAAAAGACTTCAGCCTCACGATGCCGTTTTTTGAGCTTTC-GGGGATTTAGTGGTGTT
1 GCGCCGCAAAAAGACTTCAGCCTCACGACACCG-TTTCTGAGCTTTCGGGGGATTTAGTGGCGTT
22574297 TTTGGGGAT
65 TTTGGGGAT
*
22574306 GCGCCGC-AAACGTACTTCAGCC-CAACGACACCGTTTCTGAGCTTTCGGGGGATTTAGTGGCGT
1 GCGCCGCAAAAAG-ACTTCAGCCTC-ACGACACCGTTTCTGAGCTTTCGGGGGATTTAGTGGCGT
22574369 TTT
64 TTT
22574372 CATGCAATCG
Statistics
Matches: 58, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
72 17 0.29
73 41 0.71
ACGTcount: A:0.18, C:0.23, G:0.29, T:0.30
Consensus pattern (73 bp):
GCGCCGCAAAAAGACTTCAGCCTCACGACACCGTTTCTGAGCTTTCGGGGGATTTAGTGGCGTTT
TTGGGGAT
Found at i:22574485 original size:114 final size:114
Alignment explanation
Indices: 22574284--22574857 Score: 647
Period size: 114 Copynumber: 5.0 Consensus size: 114
22574274 GCTTTCGGGG
* * * * * *
22574284 ATTTAGTGGTGTTTTTGGGGATGCGCCGCAAACGTACTTCAGCCCAACGACACCG-TTTCTGAGC
1 ATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTGAGC
* * * * *
22574348 TTTCGGGGGATTTAGTGGCGTTTTCATGCAATCGCCGCGAATGCTCAGGT
66 TTTC-GGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAGGT
* ** * * * * * * *
22574398 CTTTAGCAACGTTTTTGGGAAAACGCCGTAAACGTACTTCAGTCGAACAACACCGTTTTCTGAGC
1 ATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTGAGC
* *
22574463 TTTCGGGGATTTAGTGGCGTTTTTATTAAAGCGCCACTAATACTCAGAG-
66 TTTCGGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAG-GT
* * *
22574512 ATTTAGCGGCATTTTTGTGAAAGCGCCAC-AACAATACTTCAGCCCAACGACGCCGTTTTCTGAG
1 ATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAC-ATACTTCAGCCCAACGACGCCGTTTTCTGAG
* * *
22574576 CTTTCGGGGATTTAGTGGCGTTTTTATTAAAGCGCCGTTAATACTCAGGG
65 CTTTCGGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAGGT
* *
22574626 ATTTAGCGGCGTTTTTGTGAAAGCGCCACAATA-ATACTTCAGCCCAACGACGCCGTTTTCTGAG
1 ATTTAGCGGCGTTTTTGGGAAAGCGCCGCAA-ACATACTTCAGCCCAACGACGCCGTTTTCTGAG
** ** * * *
22574690 C-TGAGAATGATTTAGTGGCGTTTTTTTGTATGCGCCGCTAATACTCAGGT
65 CTTTCG-GGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAGGT
* * * * * *
22574740 CTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAATACTTCAGCCCAACGACGTCTTTTTTTTAGC
1 ATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTGAGC
* *
22574805 TTTCGGGGATTTAGTGGCGTTTTTATG-AAGCGCCACTAATACTCAGGG
66 TTTCGGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAGGT
22574853 ATTTA
1 ATTTA
22574858 AAATAATTTA
Statistics
Matches: 390, Mismatches: 61, Indels: 19
0.83 0.13 0.04
Matches are distributed among these distances:
113 29 0.07
114 343 0.88
115 17 0.04
116 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.24, T:0.31
Consensus pattern (114 bp):
ATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAACATACTTCAGCCCAACGACGCCGTTTTCTGAGC
TTTCGGGGATTTAGTGGCGTTTTTATGAAAGCGCCGCTAATACTCAGGT
Found at i:22575118 original size:14 final size:15
Alignment explanation
Indices: 22575085--22575118 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
22575075 TAAGTTTTAT
22575085 AGATTATGGAATTAG
1 AGATTATGGAATTAG
22575100 AGATTATGG-ATTAG
1 AGATTATGGAATTAG
*
22575114 GGATT
1 AGATT
22575119 CTGGTTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.35, C:0.00, G:0.29, T:0.35
Consensus pattern (15 bp):
AGATTATGGAATTAG
Found at i:22575165 original size:7 final size:7
Alignment explanation
Indices: 22575152--22575191 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
22575142 TAAGGTTTAT
22575152 GGGTTAG
1 GGGTTAG
*
22575159 GGATTAG
1 GGGTTAG
22575166 GGGTTAG
1 GGGTTAG
22575173 GGGTTA-
1 GGGTTAG
22575179 -GGTTAG
1 GGGTTAG
22575185 GGGTTAG
1 GGGTTAG
22575192 ATGTTAAGAG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
5 5 0.17
7 24 0.83
ACGTcount: A:0.17, C:0.00, G:0.53, T:0.30
Consensus pattern (7 bp):
GGGTTAG
Found at i:22575197 original size:14 final size:12
Alignment explanation
Indices: 22575153--22575191 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
22575143 AAGGTTTATG
*
22575153 GGTTAGGGATTA
1 GGTTAGGGGTTA
22575165 GGGGTTAGGGGTTA
1 --GGTTAGGGGTTA
22575179 GGTTAGGGGTTA
1 GGTTAGGGGTTA
22575191 G
1 G
22575192 ATGTTAAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 13 0.54
14 11 0.46
ACGTcount: A:0.18, C:0.00, G:0.51, T:0.31
Consensus pattern (12 bp):
GGTTAGGGGTTA
Found at i:22575197 original size:19 final size:21
Alignment explanation
Indices: 22575162--22575207 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
22575152 GGGTTAGGGA
*
22575162 TTAGGGGTTAGGGGTT-AG-G
1 TTAGGGGTTAGAGGTTAAGAG
*
22575181 TTAGGGGTTAGATGTTAAGAG
1 TTAGGGGTTAGAGGTTAAGAG
22575202 TTAGGG
1 TTAGGG
22575208 ATTTAGGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 14 0.61
20 2 0.09
21 7 0.30
ACGTcount: A:0.22, C:0.00, G:0.46, T:0.33
Consensus pattern (21 bp):
TTAGGGGTTAGAGGTTAAGAG
Found at i:22575197 original size:26 final size:26
Alignment explanation
Indices: 22575153--22575206 Score: 63
Period size: 26 Copynumber: 2.1 Consensus size: 26
22575143 AAGGTTTATG
* * *
22575153 GGTTAGGGATTAGGGGTTAGGGGTTA
1 GGTTAGGGATTAGAGGTTAAGAGTTA
* *
22575179 GGTTAGGGGTTAGATGTTAAGAGTTA
1 GGTTAGGGATTAGAGGTTAAGAGTTA
22575205 GG
1 GG
22575207 GATTTAGGGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.00, G:0.46, T:0.31
Consensus pattern (26 bp):
GGTTAGGGATTAGAGGTTAAGAGTTA
Found at i:22575303 original size:7 final size:7
Alignment explanation
Indices: 22575291--22575386 Score: 68
Period size: 7 Copynumber: 13.6 Consensus size: 7
22575281 TAAATAAGGT
22575291 TTAGGGG
1 TTAGGGG
22575298 TTAGGGG
1 TTAGGGG
22575305 TTAGGGG
1 TTAGGGG
*
22575312 TTAAGGG
1 TTAGGGG
*
22575319 TTAGAGG
1 TTAGGGG
* *
22575326 TCATGGG
1 TTAGGGG
*
22575333 TTAAGGGT
1 TT-AGGGG
22575341 TTA-GGG
1 TTAGGGG
*
22575347 TTAAGGG
1 TTAGGGG
* *
22575354 TTAAGAG
1 TTAGGGG
*
22575361 TTAAGGG
1 TTAGGGG
* *
22575368 CTAAGGG
1 TTAGGGG
22575375 TTAAGGGG
1 TT-AGGGG
22575383 TTAG
1 TTAG
22575387 AGATTGGGTT
Statistics
Matches: 71, Mismatches: 15, Indels: 6
0.77 0.16 0.07
Matches are distributed among these distances:
6 5 0.07
7 55 0.77
8 11 0.15
ACGTcount: A:0.24, C:0.02, G:0.45, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:22575310 original size:14 final size:14
Alignment explanation
Indices: 22575285--22575385 Score: 94
Period size: 14 Copynumber: 7.1 Consensus size: 14
22575275 ATATATTAAA
*
22575285 TAAGGTTTAGGGGT
1 TAAGGGTTAGGGGT
*
22575299 TAGGGGTTAGGGGT
1 TAAGGGTTAGGGGT
*
22575313 TAAGGGTTAGAGGT
1 TAAGGGTTAGGGGT
* * *
22575327 CATGGGTTAAGGGT
1 TAAGGGTTAGGGGT
* *
22575341 TTAGGGTTAAGGGT
1 TAAGGGTTAGGGGT
* * *
22575355 TAAGAGTTAAGGGC
1 TAAGGGTTAGGGGT
22575369 TAAGGGTTAAGGGGT
1 TAAGGGTT-AGGGGT
22575384 TA
1 TA
22575386 GAGATTGGGT
Statistics
Matches: 69, Mismatches: 17, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
14 63 0.91
15 6 0.09
ACGTcount: A:0.25, C:0.02, G:0.44, T:0.30
Consensus pattern (14 bp):
TAAGGGTTAGGGGT
Found at i:22575321 original size:21 final size:21
Alignment explanation
Indices: 22575285--22575386 Score: 98
Period size: 21 Copynumber: 4.8 Consensus size: 21
22575275 ATATATTAAA
* *
22575285 TAAGGTTTAGGGGTTAGGGGT
1 TAAGGGTTAAGGGTTAGGGGT
* *
22575306 TAGGGGTTAAGGGTTAGAGGT
1 TAAGGGTTAAGGGTTAGGGGT
* *
22575327 CATGGGTTAAGGGTTTA-GGGT
1 TAAGGGTTAAGGG-TTAGGGGT
* * *
22575348 TAAGGGTTAAGAGTTAAGGGC
1 TAAGGGTTAAGGGTTAGGGGT
22575369 TAAGGGTTAAGGGGTTAG
1 TAAGGGTTAA-GGGTTAG
22575387 AGATTGGGTT
Statistics
Matches: 65, Mismatches: 13, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
20 3 0.05
21 54 0.83
22 8 0.12
ACGTcount: A:0.25, C:0.02, G:0.44, T:0.29
Consensus pattern (21 bp):
TAAGGGTTAAGGGTTAGGGGT
Found at i:22575703 original size:19 final size:19
Alignment explanation
Indices: 22575661--22575702 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
22575651 TCAAAATTAC
*
22575661 AAAAAAT-AAAATGAAAAT
1 AAAAAATAAAAAAGAAAAT
22575679 AAAAAATAAAAAAG-AAAT
1 AAAAAATAAAAAAGAAAAT
22575697 AAAAAA
1 AAAAAA
22575703 ACTAAAATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.83, C:0.00, G:0.05, T:0.12
Consensus pattern (19 bp):
AAAAAATAAAAAAGAAAAT
Found at i:22575709 original size:18 final size:19
Alignment explanation
Indices: 22575661--22575710 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 19
22575651 TCAAAATTAC
22575661 AAAAAATAAAATGAAAAT-
1 AAAAAATAAAATGAAAATA
*
22575679 AAAAAATAAAA-AAGAAATA
1 AAAAAATAAAATGA-AAATA
22575698 AAAAAACTAAAAT
1 AAAAAA-TAAAAT
22575711 TTTTATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 1 0.04
18 15 0.56
19 6 0.22
20 5 0.19
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (19 bp):
AAAAAATAAAATGAAAATA
Found at i:22576500 original size:198 final size:197
Alignment explanation
Indices: 22576163--22576587 Score: 694
Period size: 198 Copynumber: 2.2 Consensus size: 197
22576153 GCCTAATATT
* * *
22576163 TAGTGGCGCTTA-TGTATAAACGCCACAATTTACAGAATTGTTTAGGAAAACGGCTCTGTTTTCT
1 TAGTGGCGC-TAGTATATAAACGCCGCAAATTACAGAATTGTTTAGGAAAACGGCTCTGTTTTCT
* *
22576227 TATTTAACTTTAGTGGCGCTTTTAGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACGATG
65 TATTTAACTTTAATGGCGCTTTTAGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACAATG
* *
22576292 CCGTTTTCTCTAAAACGCCATGAGTTTGAGTTAACTGATCGGGAAACGACAGCGTTTGATCATAT
130 CCGTTTTCTCTAAAACGCCATGAGTTTCAATTAACTGATCGGGAAACGACAGCGTTTGATCATAT
22576357 TAC
195 TAC
*
22576360 TAGTGGCGCTAGTATATAAACACCGCAAATTACAGAAATTGTTTAGGAAAACGGCT-TCGTTTTC
1 TAGTGGCGCTAGTATATAAACGCCGCAAATTACAG-AATTGTTTAGGAAAACGGCTCT-GTTTTC
*
22576424 TTATTT-ACTTTTAATGGCGCTTTTAGTAAACGTCGCAAAAATGTTTTAATTTTTATGGAGACAA
64 TTATTTAAC-TTTAATGGCGCTTTTAGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACAA
22576488 TGCCGTTTTCTCTAAAACGCCATGAGTTTCAATTAACTGATCGGGAAACGACAGCGTTTGATCAT
128 TGCCGTTTTCTCTAAAACGCCATGAGTTTCAATTAACTGATCGGGAAACGACAGCGTTTGATCAT
22576553 ATTAC
193 ATTAC
* *
22576558 TAGTGGCGCTGGTATACAAACGCCGCAAAT
1 TAGTGGCGCTAGTATATAAACGCCGCAAAT
22576588 GGGTTAATTA
Statistics
Matches: 212, Mismatches: 12, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
196 2 0.01
197 31 0.15
198 179 0.84
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33
Consensus pattern (197 bp):
TAGTGGCGCTAGTATATAAACGCCGCAAATTACAGAATTGTTTAGGAAAACGGCTCTGTTTTCTT
ATTTAACTTTAATGGCGCTTTTAGTAAACGCCGCAAAAATGTTTTAATTTTTATGGAGACAATGC
CGTTTTCTCTAAAACGCCATGAGTTTCAATTAACTGATCGGGAAACGACAGCGTTTGATCATATT
AC
Found at i:22577568 original size:295 final size:295
Alignment explanation
Indices: 22576987--22577576 Score: 1085
Period size: 295 Copynumber: 2.0 Consensus size: 295
22576977 ATTAGTTTCC
* * *
22576987 ATTGCTGCCATGTTGAATCATTTACTGCTGTTTTGTCGAAAATTACAAAATTGTTCAAAACCTAT
1 ATTGCTACCATGTTGAATCATTTACTGCTGTTCTGTCGAAAATTACAAAACTGTTCAAAACCTAT
22577052 TGAATGATATCTATTAATATTTGCTATGGCAGGGCTACTATACTACTATTAGAAAAAATCCAATA
66 TGAATGATATCTATTAATATTTGCTATGGCAGGGCTACTATACTACTATTAGAAAAAATCCAATA
*
22577117 GTGGCAAGGAACTGAACACTACAGCACTGTTCAAAACTTGTAAGTTCAAATTTCTAAAGAGCAAA
131 GTGGCAAGGAACTGAACACTACAGCACTGTTCAAAACTTGTAAGTTCAAACTTCTAAAGAGCAAA
* *
22577182 GTAATATTTTTGGTTGAAATCTGAGATTCAATCTTTTTTTTTGTTTTATAATATATTTAAAATTT
196 GTAATATTTTTGGTTGAAATATGAGATTCAATCTTTTTTTTTGTTTTATAATATACTTAAAATTT
22577247 ATATACATTTTTAATATATAATATATATAGTTTTA
261 ATATACATTTTTAATATATAATATATATAGTTTTA
* *
22577282 ATTGCTACCATGTTGAATCATTTACTGTTGTTCTGTCGAAAATTGCAAAACTGTTCAAAACCTAT
1 ATTGCTACCATGTTGAATCATTTACTGCTGTTCTGTCGAAAATTACAAAACTGTTCAAAACCTAT
22577347 TGAATGATATCTATTAATATTTGCTATGGCAGGGCTACTATACTACTATTAGAAAAAATCCAATA
66 TGAATGATATCTATTAATATTTGCTATGGCAGGGCTACTATACTACTATTAGAAAAAATCCAATA
*
22577412 GTGGCAAGGAACTGAACACTACAGCACTGTTCAAAACTTGTGAGTTCAAACTTCTAAAGAGCAAA
131 GTGGCAAGGAACTGAACACTACAGCACTGTTCAAAACTTGTAAGTTCAAACTTCTAAAGAGCAAA
22577477 GTAATATTTTTGGTTGAAATATGAGATTCAATC-TTTTTTTT-TTTTATAATATACTTAAAATTT
196 GTAATATTTTTGGTTGAAATATGAGATTCAATCTTTTTTTTTGTTTTATAATATACTTAAAATTT
22577540 ATATACATTTTTAATATATAATATATATAGTTTTA
261 ATATACATTTTTAATATATAATATATATAGTTTTA
22577575 AT
1 AT
22577577 ATCTAGTTTA
Statistics
Matches: 286, Mismatches: 9, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
293 58 0.20
294 8 0.03
295 220 0.77
ACGTcount: A:0.36, C:0.13, G:0.13, T:0.39
Consensus pattern (295 bp):
ATTGCTACCATGTTGAATCATTTACTGCTGTTCTGTCGAAAATTACAAAACTGTTCAAAACCTAT
TGAATGATATCTATTAATATTTGCTATGGCAGGGCTACTATACTACTATTAGAAAAAATCCAATA
GTGGCAAGGAACTGAACACTACAGCACTGTTCAAAACTTGTAAGTTCAAACTTCTAAAGAGCAAA
GTAATATTTTTGGTTGAAATATGAGATTCAATCTTTTTTTTTGTTTTATAATATACTTAAAATTT
ATATACATTTTTAATATATAATATATATAGTTTTA
Found at i:22577836 original size:18 final size:19
Alignment explanation
Indices: 22577813--22577856 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
22577803 CAGAAATTTC
*
22577813 TGTTTCTCTAGCA-TGTTA
1 TGTTTCTCTACCATTGTTA
* *
22577831 TGTTTCTGTACCATTTTTA
1 TGTTTCTCTACCATTGTTA
22577850 TGTTTCT
1 TGTTTCT
22577857 TTATTTTCTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 11 0.50
19 11 0.50
ACGTcount: A:0.14, C:0.16, G:0.14, T:0.57
Consensus pattern (19 bp):
TGTTTCTCTACCATTGTTA
Found at i:22577875 original size:22 final size:22
Alignment explanation
Indices: 22577845--22577890 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
22577835 TCTGTACCAT
*
22577845 TTTTATGTTTCT-TTATTTTCTG
1 TTTTATGTTT-TGCTATTTTCTG
*
22577867 TTTTCTGTTTTGCTATTTTCTG
1 TTTTATGTTTTGCTATTTTCTG
22577889 TT
1 TT
22577891 GAATGAAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 1 0.05
22 20 0.95
ACGTcount: A:0.07, C:0.11, G:0.11, T:0.72
Consensus pattern (22 bp):
TTTTATGTTTTGCTATTTTCTG
Found at i:22578294 original size:44 final size:43
Alignment explanation
Indices: 22578216--22578307 Score: 116
Period size: 44 Copynumber: 2.1 Consensus size: 43
22578206 CACATTGTAG
* *
22578216 TTTTTAT-TTAACTTATTAATATTAAAAAAGTATATATTCATA
1 TTTTTATCATAACTTATTAATATTAAAAAAGTATATATTAATA
* *
22578258 TATTTTATCATAACTTATTAATATTAAATATA-TATATGTTAATA
1 T-TTTTATCATAACTTATTAATATTAAA-AAAGTATATATTAATA
22578302 TTTTTA
1 TTTTTA
22578308 CAATTTAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
42 1 0.02
43 11 0.26
44 29 0.67
45 2 0.05
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.52
Consensus pattern (43 bp):
TTTTTATCATAACTTATTAATATTAAAAAAGTATATATTAATA
Found at i:22578481 original size:13 final size:13
Alignment explanation
Indices: 22578459--22578613 Score: 82
Period size: 13 Copynumber: 11.8 Consensus size: 13
22578449 TTTTACTCTT
*
22578459 AATATATTACTTG
1 AATATATTACTTA
*
22578472 AATATGTTACTTA
1 AATATATTACTTA
*
22578485 AATAAATTACTTA
1 AATATATTACTTA
*
22578498 AATACATTACTTA
1 AATATATTACTTA
*
22578511 CTAA-A-ATTTCGTTA
1 --AATATATTAC-TTA
* *
22578525 AATTTTTTACTTA
1 AATATATTACTTA
* *
22578538 AATATGTTACTCA
1 AATATATTACTTA
* *
22578551 GATACATTACTTA
1 AATATATTACTTA
* **
22578564 CTAAAAT-TTGGTTA
1 --AATATATTACTTA
* *
22578578 AATTTTTTACTTA
1 AATATATTACTTA
*
22578591 AATATGTTACTTA
1 AATATATTACTTA
*
22578604 AATACATTAC
1 AATATATTAC
22578614 CCGCTATAAA
Statistics
Matches: 105, Mismatches: 29, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
12 5 0.05
13 84 0.80
14 12 0.11
15 4 0.04
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (13 bp):
AATATATTACTTA
Found at i:22578535 original size:53 final size:53
Alignment explanation
Indices: 22578478--22578613 Score: 227
Period size: 53 Copynumber: 2.6 Consensus size: 53
22578468 CTTGAATATG
**
22578478 TTACTTAAATAAATTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
1 TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
* * *
22578531 TTACTTAAATATGTTACTCAGATACATTACTTACTAAAATTTGGTTAAATTTT
1 TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
22578584 TTACTTAAATATGTTACTTAAATACATTAC
1 TTACTTAAATATGTTACTTAAATACATTAC
22578614 CCGCTATAAA
Statistics
Matches: 76, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 76 1.00
ACGTcount: A:0.39, C:0.12, G:0.04, T:0.45
Consensus pattern (53 bp):
TTACTTAAATATGTTACTTAAATACATTACTTACTAAAATTTCGTTAAATTTT
Found at i:22578782 original size:9 final size:9
Alignment explanation
Indices: 22578758--22578999 Score: 148
Period size: 9 Copynumber: 27.8 Consensus size: 9
22578748 TATGTACAAG
22578758 AACTTACAT
1 AACTTACAT
* *
22578767 AATTTACAC
1 AACTTACAT
22578776 AACTTACAT
1 AACTTACAT
*
22578785 AACCTACAT
1 AACTTACAT
22578794 AACTTACAT
1 AACTTACAT
22578803 AA--TACA-
1 AACTTACAT
*
22578809 AAGGTTACAT
1 AA-CTTACAT
* *
22578819 AACTGAAAT
1 AACTTACAT
* *
22578828 AGCTTACAC
1 AACTTACAT
22578837 AACTTACAT
1 AACTTACAT
*
22578846 AACTTACAG
1 AACTTACAT
* *
22578855 AAGTTATAT
1 AACTTACAT
*
22578864 AATACATA-AT
1 -A-ACTTACAT
22578874 AACTTAC--
1 AACTTACAT
22578881 AACTTACAT
1 AACTTACAT
*
22578890 AACATACAT
1 AACTTACAT
* **
22578899 TACTTTGAT
1 AACTTACAT
22578908 AACTTACAT
1 AACTTACAT
*
22578917 AAGTTACA-
1 AACTTACAT
* *
22578925 AA-ATACAC
1 AACTTACAT
22578933 AACTTACAT
1 AACTTACAT
** *
22578942 AGTTTACTT
1 AACTTACAT
22578951 AA--TACAT
1 AACTTACAT
22578958 AACTTACAT
1 AACTTACAT
22578967 AACTT--AT
1 AACTTACAT
*
22578974 ACACGTACAT
1 A-ACTTACAT
22578984 AACTTACAT
1 AACTTACAT
*
22578993 AATTTAC
1 AACTTAC
22579000 TTAATACATA
Statistics
Matches: 175, Mismatches: 42, Indels: 32
0.70 0.17 0.13
Matches are distributed among these distances:
6 2 0.01
7 24 0.14
8 11 0.06
9 127 0.73
10 8 0.05
11 3 0.02
ACGTcount: A:0.45, C:0.19, G:0.04, T:0.31
Consensus pattern (9 bp):
AACTTACAT
Found at i:22578942 original size:25 final size:26
Alignment explanation
Indices: 22578908--22578999 Score: 84
Period size: 25 Copynumber: 3.7 Consensus size: 26
22578898 TTACTTTGAT
22578908 AACTTACATAAG-TTACAAAATACAC
1 AACTTACATAAGTTTACAAAATACAC
** *
22578933 AACTTACAT-AGTTTACTTAATACAT
1 AACTTACATAAGTTTACAAAATACAC
* ** *
22578958 AACTTACATAACTTATAC-ACGTACAT
1 AACTTACATAAGTT-TACAAAATACAC
22578984 AACTTACATAA-TTTAC
1 AACTTACATAAGTTTAC
22579000 TTAATACATA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
24 5 0.09
25 30 0.53
26 19 0.33
27 3 0.05
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.33
Consensus pattern (26 bp):
AACTTACATAAGTTTACAAAATACAC
Found at i:22578999 original size:51 final size:50
Alignment explanation
Indices: 22578906--22579010 Score: 147
Period size: 51 Copynumber: 2.1 Consensus size: 50
22578896 CATTACTTTG
* *
22578906 ATAACTTACATAAGTTACAAAATACACAACTTACATAGTTTACTTAATAC
1 ATAACTTACATAACTTACAAAATACACAACTTACATAATTTACTTAATAC
* ** *
22578956 ATAACTTACATAACTTATACACGTACATAACTTACATAATTTACTTAATAC
1 ATAACTTACATAACTTACA-AAATACACAACTTACATAATTTACTTAATAC
22579007 ATAA
1 ATAA
22579011 ATATATATCA
Statistics
Matches: 48, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
50 17 0.35
51 31 0.65
ACGTcount: A:0.46, C:0.18, G:0.03, T:0.33
Consensus pattern (50 bp):
ATAACTTACATAACTTACAAAATACACAACTTACATAATTTACTTAATAC
Done.