Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 58 of 199
Found at i:22584497 original size:21 final size:21
Alignment explanation
Indices: 22584471--22584541 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
22584461 CTACAACTTA
*
22584471 AAGCAGAGGCGGAAGCGAGGG
1 AAGCAGAGGCTGAAGCGAGGG
* *
22584492 AAGCAGCGGCTGTAGCGAGGG
1 AAGCAGAGGCTGAAGCGAGGG
* * *
22584513 AAGCGGAGGCTGCAGCGAGAG
1 AAGCAGAGGCTGAAGCGAGGG
22584534 AAGCAGAG
1 AAGCAGAG
22584542 CAGAGCAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.31, C:0.17, G:0.48, T:0.04
Consensus pattern (21 bp):
AAGCAGAGGCTGAAGCGAGGG
Found at i:22598345 original size:3 final size:3
Alignment explanation
Indices: 22598337--22598404 Score: 93
Period size: 3 Copynumber: 23.0 Consensus size: 3
22598327 AAACCTATTG
*
22598337 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CCT
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
* * *
22598385 CCT CCT C-T CTT TTT CTT CTT
1 CTT CTT CTT CTT CTT CTT CTT
22598405 TCCTTCTATT
Statistics
Matches: 61, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
2 2 0.03
3 59 0.97
ACGTcount: A:0.00, C:0.37, G:0.00, T:0.63
Consensus pattern (3 bp):
CTT
Found at i:22603728 original size:17 final size:17
Alignment explanation
Indices: 22603708--22603748 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 17
22603698 TTTTTAGCAG
*
22603708 TTTTATATTTTTATTTAT
1 TTTTA-ATTTTTATATAT
22603726 TTTTAATTTTTATATAT
1 TTTTAATTTTTATATAT
22603743 TATTTA
1 T-TTTA
22603749 TATTAGATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 12 0.57
18 9 0.43
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTAATTTTTATATAT
Found at i:22603745 original size:24 final size:24
Alignment explanation
Indices: 22603708--22603771 Score: 69
Period size: 24 Copynumber: 2.6 Consensus size: 24
22603698 TTTTTAGCAG
* *
22603708 TTTTATATTTTTATTTATTTTTA-AT
1 TTTTATA-TATTATTTA-TATTAGAT
22603733 TTTTATATATTATTTATATTAGAT
1 TTTTATATATTATTTATATTAGAT
22603757 TGTTT-TATATTATTT
1 T-TTTATATATTATTT
22603772 TAGATATTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 4 0.11
24 21 0.60
25 10 0.29
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (24 bp):
TTTTATATATTATTTATATTAGAT
Found at i:22607210 original size:125 final size:123
Alignment explanation
Indices: 22606988--22607265 Score: 439
Period size: 125 Copynumber: 2.2 Consensus size: 123
22606978 TTCCTCTCAA
* * * * *
22606988 TTTCCAAGACCTACTGTAGCAAAAGCGCGTCCACAGGGCGCGATTTCACAAATTCTTCTCAAATA
1 TTTCCAGGACCTACTGTAGCAAAAGCGCGTCCACAGGCCGCAATTTCACAAATTCTTATCAAACA
* *
22607053 GCATCCTGCTAGAAGCGATTTTATACTGTTTGCTCAGAAACGTCAACTCGAAATTATT
66 ACATCCTGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATT
22607111 TCTTCCAGGACCTACTGTAGCAAAAGCGCGTCCACGAGGCCGCAATTTCACAAATTCTTATCAAA
1 T-TTCCAGGACCTACTGTAGCAAAAGCGCGTCCAC-AGGCCGCAATTTCACAAATTCTTATCAAA
*
22607176 CAACATCCTGCTAGAAGCGATTTTATATTATTTGCTCAGAAACGTCAACTCGAAATTATT
64 CAACATCCTGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATT
** *
22607236 TTTTTAGGACCTACTGTAGCAAAAGTGCGT
1 TTTCCAGGACCTACTGTAGCAAAAGCGCGT
22607266 AAACGTGGGC
Statistics
Matches: 142, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
123 1 0.01
124 58 0.41
125 83 0.58
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.29
Consensus pattern (123 bp):
TTTCCAGGACCTACTGTAGCAAAAGCGCGTCCACAGGCCGCAATTTCACAAATTCTTATCAAACA
ACATCCTGCTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATT
Found at i:22609715 original size:22 final size:22
Alignment explanation
Indices: 22609690--22609732 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
22609680 ACACCAAAAC
*
22609690 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
*
22609712 AGGCCTTTAGCGGTGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
22609733 AGCGCCACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:22609854 original size:44 final size:43
Alignment explanation
Indices: 22609826--22609982 Score: 224
Period size: 43 Copynumber: 3.7 Consensus size: 43
22609816 TTTTAGAAAA
* *
22609826 AAACGCTGCTAAAGACCAAGACCTTTAGCGACGCTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
* * *
22609869 AAACGCCGCTAAAGACTAAGACCTTTAGCGGTGTTTTTACCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
* *
22609912 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
* * *
22609955 TAACGCCGCTATAGACCATGACCTTTAG
1 AAACGCCGCTAAAGACCAAGACCTTTAG
22609983 TGACGCTTCT
Statistics
Matches: 102, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 102 1.00
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCAAGACCTTTAGCGGCGCTTTTACCAC
Found at i:22612054 original size:27 final size:28
Alignment explanation
Indices: 22612024--22612118 Score: 76
Period size: 27 Copynumber: 3.5 Consensus size: 28
22612014 CTTTCAAGTT
22612024 TTTTTA-TTATTTTATAATTTTTATATA
1 TTTTTATTTATTTTATAATTTTTATATA
* ** *
22612051 -TTTTATTTCTTTTATAAAATTTATGTA
1 TTTTTATTTATTTTATAATTTTTATATA
*
22612078 TTTTTAATTTGTTTTA-AACTTTTT-TA-A
1 TTTTT-ATTTATTTTATAA-TTTTTATATA
*
22612105 GTTTTA-TTATTTTA
1 TTTTTATTTATTTTA
22612119 AATACAAGTA
Statistics
Matches: 54, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
25 7 0.13
26 6 0.11
27 22 0.41
28 7 0.13
29 12 0.22
ACGTcount: A:0.27, C:0.02, G:0.03, T:0.67
Consensus pattern (28 bp):
TTTTTATTTATTTTATAATTTTTATATA
Found at i:22614399 original size:115 final size:119
Alignment explanation
Indices: 22614171--22614408 Score: 304
Period size: 115 Copynumber: 2.0 Consensus size: 119
22614161 CAGGGGGGAA
* * *
22614171 ATTTTAGGGTAAAATGGCGCCATTTTTTAAAGTCAAATGATTTTTGTGGCGTTTTTTATAAAAAC
1 ATTTTAGGGTAAAATGGCACCATTTTTTAAAGTCAAATGAATTTTGTGCCGTTTTTTATAAAAAC
* ** * ** * * *
22614236 GCCGCTATTGCTTACCTTTTGCGGCGTTTTTTACAAAAACGTCAC-AAAAAATC
66 GCCGCAAAAGCTAACCAATAGCGACGTTTTTTACAAAAACGCCACAAAAAAATC
22614289 ATTTT-GGGTAAAATGGCACCATTTTTTAAAGTCAAAT-AATTTTGTGCCG-TTTTTATAAAAAC
1 ATTTTAGGGTAAAATGGCACCATTTTTTAAAGTCAAATGAATTTTGTGCCGTTTTTTATAAAAAC
* * * *
22614351 GCCGCAAAAGGTAAGCAATAGCGACGTTTTTTATAAAAACGCCGCAAAAAAATC
66 GCCGCAAAAGCTAACCAATAGCGACGTTTTTTACAAAAACGCCACAAAAAAATC
22614405 ATTT
1 ATTT
22614409 CATTTTGAAC
Statistics
Matches: 103, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
115 45 0.44
116 22 0.21
117 31 0.30
118 5 0.05
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (119 bp):
ATTTTAGGGTAAAATGGCACCATTTTTTAAAGTCAAATGAATTTTGTGCCGTTTTTTATAAAAAC
GCCGCAAAAGCTAACCAATAGCGACGTTTTTTACAAAAACGCCACAAAAAAATC
Found at i:22614478 original size:27 final size:25
Alignment explanation
Indices: 22614442--22614532 Score: 109
Period size: 23 Copynumber: 3.7 Consensus size: 25
22614432 TTTAAACTAA
*
22614442 TATTTAAA-T-ATATCTATTAATTC
1 TATTTAAACTAATATTTATTAATTC
* *
22614465 TATTTAAACTAATATTTAAATATATTT
1 TATTTAAACTAATATTT-ATTA-ATTC
22614492 TATTTAAACT--TATTTATTAATTC
1 TATTTAAACTAATATTTATTAATTC
22614515 TATTTAAACTAATATTTA
1 TATTTAAACTAATATTTA
22614533 AATATATCAA
Statistics
Matches: 57, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
23 21 0.37
24 4 0.07
25 16 0.28
26 3 0.05
27 13 0.23
ACGTcount: A:0.41, C:0.07, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTTAAACTAATATTTATTAATTC
Found at i:22614510 original size:50 final size:50
Alignment explanation
Indices: 22614442--22614539 Score: 171
Period size: 50 Copynumber: 2.0 Consensus size: 50
22614432 TTTAAACTAA
22614442 TATTTAAATATATCTATTAATTCTATTTAAACTAATATTTAAATATATTT
1 TATTTAAATATATCTATTAATTCTATTTAAACTAATATTTAAATATATTT
*
22614492 TATTTAAACT-TATTTATTAATTCTATTTAAACTAATATTTAAATATAT
1 TATTTAAA-TATATCTATTAATTCTATTTAAACTAATATTTAAATATAT
22614540 CAAATGGTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
50 45 0.98
51 1 0.02
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (50 bp):
TATTTAAATATATCTATTAATTCTATTTAAACTAATATTTAAATATATTT
Found at i:22615181 original size:21 final size:22
Alignment explanation
Indices: 22615140--22615192 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
22615130 GTCTAACCCC
* *
22615140 TAAATCCCTAACTCATAAACCT
1 TAAATCCCTAACCCATAAACCA
*
22615162 TAAATCCC-AACCCTTAAACCA
1 TAAATCCCTAACCCATAAACCA
22615183 T-AATCCCTAA
1 TAAATCCCTAA
22615193 ATCCATACTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.22
21 13 0.48
22 8 0.30
ACGTcount: A:0.42, C:0.34, G:0.00, T:0.25
Consensus pattern (22 bp):
TAAATCCCTAACCCATAAACCA
Found at i:22615208 original size:15 final size:15
Alignment explanation
Indices: 22615159--22615208 Score: 52
Period size: 14 Copynumber: 3.5 Consensus size: 15
22615149 AACTCATAAA
22615159 CCTTAAATCCCA-AC-
1 CCTTAAAT-CCATACT
*
22615173 CCTTAAA-CCATAAT
1 CCTTAAATCCATACT
*
22615187 CCCTAAATCCATACT
1 CCTTAAATCCATACT
22615202 CCTTAAA
1 CCTTAAA
22615209 CCTTAAAATA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
12 3 0.10
13 1 0.03
14 13 0.45
15 12 0.41
ACGTcount: A:0.38, C:0.36, G:0.00, T:0.26
Consensus pattern (15 bp):
CCTTAAATCCATACT
Found at i:22615618 original size:41 final size:41
Alignment explanation
Indices: 22615569--22615675 Score: 169
Period size: 41 Copynumber: 2.6 Consensus size: 41
22615559 CTTTTAGCGA
* *
22615569 GCTTTTTCAAAAATGCCGCTAAAGCCCCGAGCATTAGCGTC
1 GCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGC
*
22615610 GCTTTTTCAAAAACGCCGCTAAAGACCCGAGCATTAGCGGC
1 GCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGC
* *
22615651 GCTTTTTTAATAACGCCGCTAAAGC
1 GCTTTTTCAAAAACGCCGCTAAAGC
22615676 TCCAAAACGT
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 60 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (41 bp):
GCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGGC
Found at i:22622458 original size:18 final size:19
Alignment explanation
Indices: 22622425--22622464 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
22622415 TTATTATTTT
22622425 TATATCTTATAAATAAAAA
1 TATATCTTATAAATAAAAA
*
22622444 TATATCTTA-AAATAATAA
1 TATATCTTATAAATAAAAA
22622462 TAT
1 TAT
22622465 TTAAATACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
TATATCTTATAAATAAAAA
Found at i:22623762 original size:16 final size:18
Alignment explanation
Indices: 22623741--22623773 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
22623731 TATTATTAGA
22623741 TTAAATA-AAA-AATTAT
1 TTAAATATAAATAATTAT
22623757 TTAAATATAAATAATTA
1 TTAAATATAAATAATTA
22623774 ATAATTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 3 0.20
18 5 0.33
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TTAAATATAAATAATTAT
Found at i:22625238 original size:50 final size:50
Alignment explanation
Indices: 22625179--22625287 Score: 209
Period size: 50 Copynumber: 2.2 Consensus size: 50
22625169 GATTGTTGAT
22625179 ATATTTTTACCTATTACTTATGAGAATGTGATAAATTTAACTAGCAAATA
1 ATATTTTTACCTATTACTTATGAGAATGTGATAAATTTAACTAGCAAATA
*
22625229 ATATTTTTACCTATTACTTATGAGAATGTGATAATTTTAACTAGCAAATA
1 ATATTTTTACCTATTACTTATGAGAATGTGATAAATTTAACTAGCAAATA
22625279 ATATTTTTA
1 ATATTTTTA
22625288 TTGCAAATAC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 58 1.00
ACGTcount: A:0.39, C:0.09, G:0.09, T:0.43
Consensus pattern (50 bp):
ATATTTTTACCTATTACTTATGAGAATGTGATAAATTTAACTAGCAAATA
Found at i:22627491 original size:27 final size:30
Alignment explanation
Indices: 22627437--22627491 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
22627427 GTAATAAAAT
*
22627437 AAATAAAAATAATCAATAATTTGCTTTAAA
1 AAATAAAAATAATCAATAATTTGATTTAAA
*
22627467 AAATTAAAAT-AT-AATAA-TTGATTTA
1 AAATAAAAATAATCAATAATTTGATTTA
22627492 TTCATTACCA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
27 7 0.30
28 5 0.22
29 2 0.09
30 9 0.39
ACGTcount: A:0.56, C:0.04, G:0.04, T:0.36
Consensus pattern (30 bp):
AAATAAAAATAATCAATAATTTGATTTAAA
Found at i:22627803 original size:11 final size:11
Alignment explanation
Indices: 22627789--22627815 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
22627779 TATTATATTC
22627789 GGGCCGGGCCG
1 GGGCCGGGCCG
22627800 GGGCCGGGCCG
1 GGGCCGGGCCG
22627811 GGGCC
1 GGGCC
22627816 AAAAATTGGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.37, G:0.63, T:0.00
Consensus pattern (11 bp):
GGGCCGGGCCG
Found at i:22631172 original size:146 final size:146
Alignment explanation
Indices: 22630904--22631201 Score: 589
Period size: 146 Copynumber: 2.0 Consensus size: 146
22630894 ACCTATTGTC
22630904 ATTT-CAATCATTCTTCCATGGTTCTAACATTATAAGCTCCCTTAGAAGAAATAAGAAAGCCTAC
1 ATTTGCAATCATTCTTCCATGGTTCTAACATTATAAGCTCCCTTAGAAGAAATAAGAAAGCCTAC
22630968 TTTGATAGCCCCATCTAATAAAACATCCTTCAACCCACTCCGCTTCAATTATTGGATAGAATATA
66 TTTGATAGCCCCATCTAATAAAACATCCTTCAACCCACTCCGCTTCAATTATTGGATAGAATATA
22631033 ATTCTGGTAATGTCTT
131 ATTCTGGTAATGTCTT
22631049 ATTTGCAATCATTCTTCCATGGTTCTAACATTATAAGCTCCCTTAGAAGAAATAAGAAAGCCTAC
1 ATTTGCAATCATTCTTCCATGGTTCTAACATTATAAGCTCCCTTAGAAGAAATAAGAAAGCCTAC
22631114 TTTGATAGCCCCATCTAATAAAACATCCTTCAACCCACTCCGCTTCAATTATTGGATAGAATATA
66 TTTGATAGCCCCATCTAATAAAACATCCTTCAACCCACTCCGCTTCAATTATTGGATAGAATATA
22631179 ATTCTGGTAATGTCTT
131 ATTCTGGTAATGTCTT
22631195 ATTTGCA
1 ATTTGCA
22631202 TGTAACTCTT
Statistics
Matches: 152, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
145 4 0.03
146 148 0.97
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (146 bp):
ATTTGCAATCATTCTTCCATGGTTCTAACATTATAAGCTCCCTTAGAAGAAATAAGAAAGCCTAC
TTTGATAGCCCCATCTAATAAAACATCCTTCAACCCACTCCGCTTCAATTATTGGATAGAATATA
ATTCTGGTAATGTCTT
Found at i:22632813 original size:23 final size:23
Alignment explanation
Indices: 22632778--22632822 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
22632768 CCTTATTTAA
**
22632778 TTCAAATTGATTAT-AATATTATT
1 TTCAAATAAATTATCAA-ATTATT
22632801 TTCAAATAAATTATCAAATTAT
1 TTCAAATAAATTATCAAATTAT
22632823 AAAATGACAC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.44, C:0.07, G:0.02, T:0.47
Consensus pattern (23 bp):
TTCAAATAAATTATCAAATTATT
Found at i:22636103 original size:92 final size:89
Alignment explanation
Indices: 22635946--22636213 Score: 294
Period size: 92 Copynumber: 3.0 Consensus size: 89
22635936 TTGATTTTAG
* * *
22635946 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATGACTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTA-TAAGAATTTTATGAAATTATAT-TAATTATTAAATTAT
*
22636011 ATTTAATATTAATTATTTTAAATTGTA
63 ATTTAATATTAATTATTTTAAATTATA
22636038 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTTAATATTAATTATTAAATTAT
1 TAAATTCATATAAGAAAATTTATTAT-AAGAATTTTATGAAA-TT-ATATTAATTATTAAATTAT
*
22636103 ATGTAATAATT-ATTATTTTAAATTATA
63 ATTTAAT-ATTAATTATTTTAAATTATA
* * * * * * * *
22636130 CAAATTCATAAAATATAATTTATTAGTTATAATTATT-TTAAATTATTTTAATTA--AAA-TATA
1 TAAATTCATATAAGAAAATTTATTA-TAAGAATT-TTATGAAATTATATTAATTATTAAATTATA
*
22636191 TTTAATATTAATTATTTCAAATT
64 TTTAATATTAATTATTTTAAATT
22636214 TTCATTTATA
Statistics
Matches: 154, Mismatches: 15, Indels: 19
0.82 0.08 0.10
Matches are distributed among these distances:
86 3 0.02
87 21 0.14
88 3 0.02
90 10 0.06
91 25 0.16
92 82 0.53
93 10 0.06
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.48
Consensus pattern (89 bp):
TAAATTCATATAAGAAAATTTATTATAAGAATTTTATGAAATTATATTAATTATTAAATTATATT
TAATATTAATTATTTTAAATTATA
Found at i:22636117 original size:24 final size:25
Alignment explanation
Indices: 22636082--22636129 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
22636072 TTATGAAATT
22636082 TAATATTAATTA-TTAAATTATATG
1 TAATATTAATTATTTAAATTATATG
22636106 TAATAATT-ATTATTTTAAATTATA
1 TAAT-ATTAATTA-TTTAAATTATA
22636130 CAAATTCATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 8 0.38
25 3 0.14
26 10 0.48
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (25 bp):
TAATATTAATTATTTAAATTATATG
Found at i:22636265 original size:66 final size:62
Alignment explanation
Indices: 22636194--22636404 Score: 172
Period size: 66 Copynumber: 3.4 Consensus size: 62
22636184 AAATATATTT
22636194 AATATTAATTATTTCAAATTTTCATTTATAGTATCATATATTATGATTTGAGTAAATTCATATAA
1 AATATTAATTATTT-AAATTTT-ATTTA-AGTATCATATATTATGATTTGAGTAAATT-ATATAA
22636259 G
62 G
* * * * **
22636260 AATATTAATTATTAAGAATTTTA-TTAA--ATTATATATT-TTAATT-A-T-AA-TATAT-TT
1 AATATTAATTATTTA-AATTTTATTTAAGTATCATATATTATGATTTGAGTAAATTATATAAG
* *
22636314 AATAATAATTATGTT-AATTTATATTTTACAGTATCTTATATTATGATTTGAGTAAATTTATATA
1 AATATTAATTAT-TTAAATTT-TA-TTTA-AGTATCATATATTATGATTTGAGTAAA-TTATATA
22636378 AG
61 AG
*
22636380 AATATTAATTATTAAGAATTTTATT
1 AATATTAATTATTTA-AATTTTATT
22636405 AAATTATATA
Statistics
Matches: 112, Mismatches: 16, Indels: 35
0.69 0.10 0.21
Matches are distributed among these distances:
53 5 0.04
54 13 0.12
55 5 0.04
56 4 0.04
57 3 0.03
58 1 0.01
59 9 0.08
60 8 0.07
61 10 0.09
62 1 0.01
63 3 0.03
64 3 0.03
65 10 0.09
66 32 0.29
67 5 0.04
ACGTcount: A:0.41, C:0.03, G:0.06, T:0.50
Consensus pattern (62 bp):
AATATTAATTATTTAAATTTTATTTAAGTATCATATATTATGATTTGAGTAAATTATATAAG
Found at i:22636302 original size:120 final size:120
Alignment explanation
Indices: 22636173--22636448 Score: 459
Period size: 120 Copynumber: 2.3 Consensus size: 120
22636163 TATTTTAAAT
* * *
22636173 TATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTT-TCA-TTTATAGTATCATATAT
1 TATTTTAATTATAATATATTTAATAATAATTATGTT--AATTTAT-ATTTTACAGTATCATATAT
22636235 TATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATA
63 TATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATA
*
22636293 TATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCTTATATTAT
1 TATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTAT
*
22636358 GATTTGAGTAAATTTATATAAGAATATTAATTATTAAGAATTTTATTAAATTATA
66 GATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATA
22636413 TATTTTAATTATAATATATTTAATAATAATTATGTT
1 TATTTTAATTATAATATATTTAATAATAATTATGTT
22636449 TAAATATGAT
Statistics
Matches: 148, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
119 6 0.04
120 140 0.95
121 2 0.01
ACGTcount: A:0.42, C:0.02, G:0.05, T:0.51
Consensus pattern (120 bp):
TATTTTAATTATAATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTAT
GATTTGAGTAAATTCATATAAGAATATTAATTATTAAGAATTTTATTAAATTATA
Found at i:22636316 original size:15 final size:15
Alignment explanation
Indices: 22636281--22636332 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
22636271 TTAAGAATTT
*
22636281 TATTAAATTAT-ATA
1 TATTTAATTATAATA
22636295 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
22636309 TATTTAATAATAAT-
1 TATTTAATTATAATA
22636323 TATGTTAATT
1 TAT-TTAATT
22636333 TATATTTTAC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 8 0.25
14 8 0.25
15 16 0.50
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:22636431 original size:16 final size:16
Alignment explanation
Indices: 22636410--22636451 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
22636400 TTATTAAATT
*
22636410 ATATATTTTAATTATA
1 ATATATTTTAATAATA
22636426 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
22636441 AT-TATGTTTAA
1 ATATAT-TTTAA
22636452 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:22636436 original size:15 final size:15
Alignment explanation
Indices: 22636401--22636442 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
22636391 TTAAGAATTT
*
22636401 TATTAAATTAT-ATA
1 TATTTAATTATAATA
22636415 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
22636429 TATTTAATAATAAT
1 TATTTAATTATAAT
22636443 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:22637003 original size:18 final size:19
Alignment explanation
Indices: 22636980--22637035 Score: 62
Period size: 19 Copynumber: 3.0 Consensus size: 19
22636970 GAATTACAAG
22636980 AAAATTCAAAATAATTT-TA
1 AAAATTCAAAAT-ATTTATA
* *
22636999 AAATTTTAAAATATTTATA
1 AAAATTCAAAATATTTATA
*
22637018 AAAATTCCAAA-ATTTATA
1 AAAATTCAAAATATTTATA
22637036 TTTATAAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
18 11 0.35
19 20 0.65
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.39
Consensus pattern (19 bp):
AAAATTCAAAATATTTATA
Found at i:22641405 original size:2 final size:2
Alignment explanation
Indices: 22641400--22641427 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22641390 TATATATATG
22641400 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
22641428 CCTATGTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Found at i:22646431 original size:11 final size:11
Alignment explanation
Indices: 22646415--22646440 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
22646405 AATTGATTGC
22646415 ATTTTCATGTT
1 ATTTTCATGTT
22646426 ATTTTCATGTT
1 ATTTTCATGTT
22646437 ATTT
1 ATTT
22646441 GCCCATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.08, G:0.08, T:0.65
Consensus pattern (11 bp):
ATTTTCATGTT
Found at i:22651147 original size:44 final size:44
Alignment explanation
Indices: 22651097--22651187 Score: 148
Period size: 44 Copynumber: 2.1 Consensus size: 44
22651087 AACTCTGTTT
*
22651097 TTAGTTT-TCTACTTAAACTCTGATTAGTGTAAGTTATTTTAATA
1 TTAGTTTCTC-ACTTAAACTCTAATTAGTGTAAGTTATTTTAATA
*
22651141 TTAGTTTCTCACTTAAACTCTAATTAGTGTATGTTATTTTAATA
1 TTAGTTTCTCACTTAAACTCTAATTAGTGTAAGTTATTTTAATA
22651185 TTA
1 TTA
22651188 TTTGACCTAC
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
44 42 0.95
45 2 0.05
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.51
Consensus pattern (44 bp):
TTAGTTTCTCACTTAAACTCTAATTAGTGTAAGTTATTTTAATA
Found at i:22653860 original size:21 final size:20
Alignment explanation
Indices: 22653838--22653875 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22653828 GCATAGTATA
22653838 AAAAAATAATTTTAAAATAT
1 AAAAAATAATTTTAAAATAT
* *
22653858 AAAATATTATTTTAAAAT
1 AAAAAATAATTTTAAAAT
22653876 TTAATTCAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
AAAAAATAATTTTAAAATAT
Found at i:22664370 original size:14 final size:14
Alignment explanation
Indices: 22664351--22664383 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
22664341 ATCCTAAACT
*
22664351 AAAAAAA-AGGAAG
1 AAAAAAAGAAGAAG
22664364 AAAAAAAGAAGAAG
1 AAAAAAAGAAGAAG
22664378 AAAAAA
1 AAAAAA
22664384 CCCAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 7 0.39
14 11 0.61
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (14 bp):
AAAAAAAGAAGAAG
Found at i:22669407 original size:2 final size:2
Alignment explanation
Indices: 22669400--22669427 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
22669390 CTATTTTGAA
22669400 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22669428 GAAGATAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22674578 original size:22 final size:21
Alignment explanation
Indices: 22674530--22674578 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
22674520 AACTAAATCC
* * *
22674530 TTTCTCTCAATTTCTCTCTAA
1 TTTCTCTCAACTCCTCTCAAA
22674551 TATTCTCTCAAACTCCTCTCAAA
1 T-TTCTCTC-AACTCCTCTCAAA
22674574 TTTCT
1 TTTCT
22674579 ATTTAAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
21 1 0.04
22 11 0.48
23 11 0.48
ACGTcount: A:0.22, C:0.31, G:0.00, T:0.47
Consensus pattern (21 bp):
TTTCTCTCAACTCCTCTCAAA
Found at i:22675960 original size:18 final size:18
Alignment explanation
Indices: 22675924--22675966 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
22675914 TGCCAGGTGC
* *
22675924 GTATCCTAGCCCTTTTAT
1 GTATCCTAACCCTTATAT
*
22675942 GTATCCTAACTCTTATAT
1 GTATCCTAACCCTTATAT
*
22675960 GTTTCCT
1 GTATCCT
22675967 TTTTCTAGTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.09, T:0.47
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:22677343 original size:94 final size:96
Alignment explanation
Indices: 22677125--22677399 Score: 270
Period size: 94 Copynumber: 2.9 Consensus size: 96
22677115 CGTAACCCTA
* * * *
22677125 AACCCCAAATCCTGATTTATTTGAGTTTTTACTTAAAAATCCTAAACACTAAACCCTAATCTAAT
1 AACCCTAAACCCTAATTTATTTGA-TTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAAT
* *
22677190 TTTATAAAAATTTATAATTAATTTACTCAAGT
65 TTTATAAAAATATATAATTAAATTACTCAAGT
* * * * ** * *
22677222 AACCCTGAACCCTAATTTATTTAATTTTTCCTTAAAAACCCTTAACTGTAAACCCTAATTTGATT
1 AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAATT
* *
22677287 TTTTAAAAA-AT-TAATTAAATTACTTAAGT
66 TTATAAAAATATATAATTAAATTACTCAAGT
* * * ** ** *
22677316 AACCTTAAACCCTAATTTAATTGATTTTTTCTTAAAAAACAATAAACACGGAA-CCTAATCCAAT
1 AACCCTAAACCCTAATTTATTTGATTTTTACTT-AAAAACCCTAAACACTAAACCCTAATCTAAT
* *
22677380 TTT-GAAAAATTTATAATTAA
65 TTTATAAAAATATATAATTAA
22677400 TTTAATTGAC
Statistics
Matches: 142, Mismatches: 33, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
93 5 0.04
94 56 0.39
95 20 0.14
96 42 0.30
97 19 0.13
ACGTcount: A:0.41, C:0.17, G:0.04, T:0.38
Consensus pattern (96 bp):
AACCCTAAACCCTAATTTATTTGATTTTTACTTAAAAACCCTAAACACTAAACCCTAATCTAATT
TTATAAAAATATATAATTAAATTACTCAAGT
Found at i:22678036 original size:2 final size:2
Alignment explanation
Indices: 22678029--22678060 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
22678019 GAATTAAACC
22678029 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
22678061 TCATATCTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:22678918 original size:14 final size:15
Alignment explanation
Indices: 22678895--22678923 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
22678885 TTCTTAAAAT
22678895 AATTTAAATAAATAA
1 AATTTAAATAAATAA
22678910 AATTT-AATAAATAA
1 AATTTAAATAAATAA
22678924 TTAGATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
AATTTAAATAAATAA
Found at i:22680040 original size:21 final size:22
Alignment explanation
Indices: 22680016--22680065 Score: 68
Period size: 21 Copynumber: 2.3 Consensus size: 22
22680006 TTCAGTTATT
22680016 TAATTATAATT-AATTAAAT-AA
1 TAATTA-AATTAAATTAAATGAA
22680037 TAATTAAATTAAATTAAATGAA
1 TAATTAAATTAAATTAAATGAA
*
22680059 TTATTAA
1 TAATTAA
22680066 GTCATCTCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 4 0.15
21 14 0.54
22 8 0.31
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (22 bp):
TAATTAAATTAAATTAAATGAA
Found at i:22680041 original size:15 final size:16
Alignment explanation
Indices: 22680021--22680050 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22680011 TTATTTAATT
22680021 ATAATT-AATTAAATA
1 ATAATTAAATTAAATA
22680036 ATAATTAAATTAAAT
1 ATAATTAAATTAAAT
22680051 TAAATGAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (16 bp):
ATAATTAAATTAAATA
Found at i:22687184 original size:24 final size:24
Alignment explanation
Indices: 22687135--22687185 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
22687125 ATTTCTAATA
*
22687135 TTTGTCTTCAATTTCTATCATCTTT
1 TTTGTCTTCAATTTC-ATCATATTT
*
22687160 TTTGTCTTCAGCTTTC-TCATATTT
1 TTTGTCTTCA-ATTTCATCATATTT
22687184 TT
1 TT
22687186 ACTTGTATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 9 0.39
25 10 0.43
26 4 0.17
ACGTcount: A:0.14, C:0.20, G:0.06, T:0.61
Consensus pattern (24 bp):
TTTGTCTTCAATTTCATCATATTT
Found at i:22691442 original size:25 final size:26
Alignment explanation
Indices: 22691408--22691461 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
22691398 AACAATAATC
* *
22691408 AAATTGTTATGTTTAATTTT-ATCCA
1 AAATTATTATATTTAATTTTGATCCA
* *
22691433 AAATTATTATATTTAGTTTTGGTCCA
1 AAATTATTATATTTAATTTTGATCCA
22691459 AAA
1 AAA
22691462 CAACAAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
25 17 0.71
26 7 0.29
ACGTcount: A:0.35, C:0.07, G:0.09, T:0.48
Consensus pattern (26 bp):
AAATTATTATATTTAATTTTGATCCA
Found at i:22695817 original size:3 final size:3
Alignment explanation
Indices: 22695809--22695857 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
22695799 AGTATCCCCA
22695809 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
22695857 T
1 T
22695858 GGGTGTGATT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:22698131 original size:3 final size:3
Alignment explanation
Indices: 22698123--22698147 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
22698113 ACCAAAATAT
22698123 GAA GAA GAA GAA GAA GAA GAA GAA G
1 GAA GAA GAA GAA GAA GAA GAA GAA G
22698148 GAAAAAAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:22703204 original size:13 final size:14
Alignment explanation
Indices: 22703180--22703212 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
22703170 GAACCATGAC
*
22703180 CTGAATCCTGAACT
1 CTGAACCCTGAACT
22703194 C-GAACCCTGAACT
1 CTGAACCCTGAACT
22703207 CTGAAC
1 CTGAAC
22703213 TTCAAACCAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.30, C:0.33, G:0.15, T:0.21
Consensus pattern (14 bp):
CTGAACCCTGAACT
Found at i:22703225 original size:21 final size:20
Alignment explanation
Indices: 22703187--22703226 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
22703177 GACCTGAATC
* *
22703187 CTGAACTCGAACCCTGAACT
1 CTGAACTCAAACCATGAACT
22703207 CTGAACTTCAAACCATGAAC
1 CTGAAC-TCAAACCATGAAC
22703227 CCTAACCTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.35, C:0.33, G:0.12, T:0.20
Consensus pattern (20 bp):
CTGAACTCAAACCATGAACT
Found at i:22706253 original size:30 final size:29
Alignment explanation
Indices: 22706211--22706290 Score: 81
Period size: 30 Copynumber: 2.7 Consensus size: 29
22706201 AAATTTTAAA
*
22706211 TTAATAAA-GATAAAATTATACTTTGACCCC
1 TTAA-AAATGATAAAATTATA-TTTAACCCC
* *
22706241 TTAAAAATGATAAAATTTTGATTTAACCCT
1 TTAAAAATGATAAAATTAT-ATTTAACCCC
* *
22706271 TTAAAAATTATAAAAATATA
1 TTAAAAATGATAAAATTATA
22706291 AACTATTCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
29 4 0.10
30 37 0.88
31 1 0.02
ACGTcount: A:0.49, C:0.10, G:0.05, T:0.36
Consensus pattern (29 bp):
TTAAAAATGATAAAATTATATTTAACCCC
Found at i:22711983 original size:31 final size:30
Alignment explanation
Indices: 22711948--22712055 Score: 85
Period size: 31 Copynumber: 3.5 Consensus size: 30
22711938 ACATTAATGC
*
22711948 TAAATTGATAAAATACTATCAAGATAATTAT
1 TAAATTAATAAAATACTATCAAGATAA-TAT
* ** * *
22711979 TAAATCAAATTTAATA-TTTCACA-TTAATAT
1 TAAAT-TAATAAAATACTATCA-AGATAATAT
*
22712009 TAAATTAATAAAATACTATCAAGATAAATAA
1 TAAATTAATAAAATACTATCAAGAT-AATAT
*
22712040 TAAATTTATTAAAATA
1 TAAA-TTAATAAAATA
22712056 ATATTATTTT
Statistics
Matches: 58, Mismatches: 13, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
29 8 0.14
30 13 0.22
31 20 0.34
32 17 0.29
ACGTcount: A:0.54, C:0.06, G:0.03, T:0.37
Consensus pattern (30 bp):
TAAATTAATAAAATACTATCAAGATAATAT
Found at i:22717032 original size:44 final size:44
Alignment explanation
Indices: 22716964--22717431 Score: 167
Period size: 44 Copynumber: 10.7 Consensus size: 44
22716954 GATGCGATCT
* * * * * *
22716964 ACTCTACTGTAA-CTTCAGTGAGATAAGATCATTTGTTTTAATCC
1 ACTCCACTGTAATC-TCAGGGAGATAAGATCACTAGCTTCAATCC
* * * *
22717008 ATTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCACTAGCTTCAATCC
* * * ** *
22717052 GCTCCGCTGTAATCTCAGGGAGATAAGA-C-CTGAAATTCTTCGGTCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCACT---A-GCTTCAATCC
** * * * * * *
22717098 GTTTCACTGTAATCTCAGGGAAATAAGA-C-CT-GGTGCGATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCACTAGCTTCAATCC
* * * * *
22717139 ACTCTACTGTAA-CTTCAGAGAGATAAGATC-CTTGGTTTTAATCC
1 ACTCCACTGTAATC-TCAGGGAGATAAGATCAC-TAGCTTCAATCC
* * * * *
22717183 GCTCCACTGTAATCTCAGAGAGATAGGATTACTAGCTTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCACTAGCTTCAATCC
* * * * * *
22717227 GCTCCGCTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTCAGTCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATC--ACTA-GCTTCAATCC
** * * * * *
22717273 GTTCCACTGTAATCTCAGGGAAATAAGA-C-CT-GGTGCGATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCACTAGCTTCAATCC
* * *
22717314 ACTCTACTGTAA-CTTCAGAGG-GATAAGATC-CTTTA-TTTTAATCC
1 ACTCCACTGTAATC-TCAG-GGAGATAAGATCAC--TAGCTTCAATCC
* * * ** *
22717358 GCTCCACTGTAATCTCAGGGAGATAGGATTACTATATTCAATCT
1 ACTCCACTGTAATCTCAGGGAGATAAGATCACTAGCTTCAATCC
* * *
22717402 GCTCCGCTGTAATCTCAGAGAGATAAGATC
1 ACTCCACTGTAATCTCAGGGAGATAAGATC
22717432 TGCAATTCTT
Statistics
Matches: 318, Mismatches: 81, Indels: 50
0.71 0.18 0.11
Matches are distributed among these distances:
40 2 0.01
41 50 0.16
42 8 0.03
43 5 0.02
44 177 0.56
45 8 0.03
46 68 0.21
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (44 bp):
ACTCCACTGTAATCTCAGGGAGATAAGATCACTAGCTTCAATCC
Found at i:22717218 original size:175 final size:175
Alignment explanation
Indices: 22716950--22717518 Score: 967
Period size: 175 Copynumber: 3.3 Consensus size: 175
22716940 GGGAGGTAAA
* * * **
22716950 ACCTGATGCGATCTACTCTACTGTAACTTCAGTGAGATAAGATCATTTGTTTTAATCCATTCCAC
1 ACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
22717015 TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
66 TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
* *
22717080 CCTGAAATTCTTCGGTCTGTTTCACTGTAATCTCAGGGAAATAAG
131 TCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAG
*
22717125 ACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGGTTTTAATCCGCTCCAC
1 ACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
*
22717190 TGTAATCTCAGAGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
66 TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
*
22717255 TCTGAAATTCTTCAGTCTGTTCCACTGTAATCTCAGGGAAATAAG
131 TCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAG
* *
22717300 ACCTGGTGCGATCTACTCTACTGTAACTTCAGAGGGATAAGATCCTTTATTTTAATCCGCTCCAC
1 ACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
** *
22717365 TGTAATCTCAGGGAGATAGGATTACTATATTCAATCTGCTCCGCTGTAATCTCAGAGAGATAAGA
66 TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
* *
22717430 TCTGCAATTCTTCGGTCTGTTCCACCGTAATCTCAGGGAAATAAG
131 TCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAG
* *
22717475 ACCTAGTGCGATCTACTCTACTGTAACTTCAAAGAGATAAGATC
1 ACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATC
22717519 ATTTCTTCAA
Statistics
Matches: 371, Mismatches: 23, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
175 371 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (175 bp):
ACCTGGTGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCAC
TGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGA
TCTGAAATTCTTCGGTCTGTTCCACTGTAATCTCAGGGAAATAAG
Found at i:22717634 original size:87 final size:87
Alignment explanation
Indices: 22717522--22717780 Score: 317
Period size: 87 Copynumber: 3.0 Consensus size: 87
22717512 TAAGATCATT
* * * *
22717522 TCTTCAATCAGCT-TCACTGCAACCGATGGGGGCAATGCTTTGTTTTCGATCTGCTTCGTTGTTA
1 TCTTCAATCAGCTCT-ACTGCAACCGATGGAGACAATGCTTTGTTTTCAATCTGCTTCGCTGTTA
22717586 ACGCAGGAAGGCAAGATCTGCTA
65 ACGCAGGAAGGCAAGATCTGCTA
* *
22717609 TCTTCAATCAGCTCTACTACAACCGATGGAGACAATACTTTGTTTTCAATCTGCTTCGCTGTTAA
1 TCTTCAATCAGCTCTACTGCAACCGATGGAGACAATGCTTTGTTTTCAATCTGCTTCGCTGTTAA
*
22717674 CGCAGGAAGGCCAGA-CTTGCTA
66 CGCAGGAAGGCAAGATC-TGCTA
* * * * * * * *
22717696 TCATCAACCAGTTCCACCGCAACCGATGGAGACAAAGC-TTGTATCTTCAATCTGCTTCACTGTC
1 TCTTCAATCAGCTCTACTGCAACCGATGGAGACAATGCTTTGT-T-TTCAATCTGCTTCGCTGTT
*
22717760 AAGGCAGGAAGGCAAGATCTG
64 AACGCAGGAAGGCAAGATCTG
22717781 TTGTCTTTGA
Statistics
Matches: 148, Mismatches: 19, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
86 5 0.03
87 107 0.72
88 35 0.24
89 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (87 bp):
TCTTCAATCAGCTCTACTGCAACCGATGGAGACAATGCTTTGTTTTCAATCTGCTTCGCTGTTAA
CGCAGGAAGGCAAGATCTGCTA
Found at i:22719015 original size:15 final size:16
Alignment explanation
Indices: 22718997--22719030 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
22718987 CCATTTTTCC
*
22718997 TTTTTCCTT-TTTCAT
1 TTTTTCATTCTTTCAT
22719012 TTTTTCATTCTTTCAT
1 TTTTTCATTCTTTCAT
22719028 TTT
1 TTT
22719031 CATTTTCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTCATTCTTTCAT
Found at i:22719025 original size:16 final size:15
Alignment explanation
Indices: 22718988--22719042 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 15
22718978 TTTGCCTCTC
*
22718988 CATTTTTC-CTTTTT
1 CATTTTTCATTTTTT
*
22719002 CCTTTTTCATTTTTT
1 CATTTTTCATTTTTT
22719017 CATTCTTTCA--TTTT
1 CATT-TTTCATTTTTT
22719031 CA-TTTTCATTTT
1 CATTTTTCATTTT
22719043 CATTTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
12 5 0.15
13 1 0.03
14 15 0.44
15 8 0.24
16 5 0.15
ACGTcount: A:0.11, C:0.20, G:0.00, T:0.69
Consensus pattern (15 bp):
CATTTTTCATTTTTT
Found at i:22719054 original size:6 final size:6
Alignment explanation
Indices: 22718990--22719072 Score: 60
Period size: 6 Copynumber: 12.8 Consensus size: 6
22718980 TGCCTCTCCA
* *
22718990 TTTTTCC TTTTTCC TTTTTC ATTTTTTC ATTCTTTC ATTTTC ATTTTC
1 TTTTT-C TTTTT-C TTTTTC --TTTTTC -TT-TTTC TTTTTC TTTTTC
* *
22719038 ATTTTC ATTTTC TTTTT- TTTTTC TTTTTTC TTTTT
1 TTTTTC TTTTTC TTTTTC TTTTTC -TTTTTC TTTTT
22719073 TACTCAAAGT
Statistics
Matches: 68, Mismatches: 3, Indels: 11
0.83 0.04 0.13
Matches are distributed among these distances:
5 5 0.07
6 32 0.47
7 21 0.31
8 10 0.15
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTTC
Found at i:22719059 original size:11 final size:12
Alignment explanation
Indices: 22719039--22719071 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
22719029 TTCATTTTCA
22719039 TTTTCATTTTCTT
1 TTTTC-TTTTCTT
22719052 TTTT-TTTTCTT
1 TTTTCTTTTCTT
22719063 TTTTCTTTT
1 TTTTCTTTT
22719072 TTACTCAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 11 0.58
12 4 0.21
13 4 0.21
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTCTTTTCTT
Found at i:22719930 original size:11 final size:11
Alignment explanation
Indices: 22719909--22719982 Score: 53
Period size: 11 Copynumber: 6.5 Consensus size: 11
22719899 TTGACCTCTC
22719909 CTTTTTCTTTTT
1 CTTTTT-TTTTT
*
22719921 -TTTCTTTTTT
1 CTTTTTTTTTT
* *
22719931 CCTTATTTTTT
1 CTTTTTTTTTT
* *
22719942 CCTTATTTTTT
1 CTTTTTTTTTT
22719953 CTTTTTCTCTTTT
1 CTTTTT-T-TTTT
22719966 CTTTTCTTTTTT
1 CTTTT-TTTTTT
22719978 -TTTTT
1 CTTTTT
22719983 GATTTTTTGA
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
10 6 0.11
11 31 0.58
12 5 0.09
13 10 0.19
14 1 0.02
ACGTcount: A:0.03, C:0.16, G:0.00, T:0.81
Consensus pattern (11 bp):
CTTTTTTTTTT
Found at i:22719951 original size:12 final size:11
Alignment explanation
Indices: 22719925--22719953 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
22719915 CTTTTTTTTC
22719925 TTTTTTCCTTA
1 TTTTTTCCTTA
22719936 TTTTTTCCTTA
1 TTTTTTCCTTA
22719947 TTTTTTC
1 TTTTTTC
22719954 TTTTTCTCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (11 bp):
TTTTTTCCTTA
Found at i:22719970 original size:18 final size:17
Alignment explanation
Indices: 22719911--22719976 Score: 57
Period size: 18 Copynumber: 3.8 Consensus size: 17
22719901 GACCTCTCCT
*
22719911 TTTTC-TTTTTTTTCTT
1 TTTTCTTTTTTTTTCTC
*
22719927 TTTTCCTTATTTTTTC-C
1 TTTT-CTTTTTTTTTCTC
22719944 TTATT-TTTTCTTTTTCTC
1 TT-TTCTTTT-TTTTTCTC
22719962 TTTTCTTTTCTTTTT
1 TTTTCTTTT-TTTTT
22719977 TTTTTTGATT
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
16 7 0.17
17 11 0.27
18 23 0.56
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (17 bp):
TTTTCTTTTTTTTTCTC
Found at i:22719970 original size:29 final size:29
Alignment explanation
Indices: 22719909--22719980 Score: 87
Period size: 28 Copynumber: 2.5 Consensus size: 29
22719899 TTGACCTCTC
*
22719909 CTTTTTCTTTTTTTTCTTTTTTCCTTATT
1 CTTTTCCTTTTTTTTCTTTTTTCCTTATT
22719938 -TTTTCCTTATTTTTTC-TTTTTCTCTT-TT
1 CTTTTCCTT-TTTTTTCTTTTTTC-CTTATT
*
22719966 CTTTTCTTTTTTTTT
1 CTTTTCCTTTTTTTT
22719981 TTGATTTTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
28 21 0.55
29 17 0.45
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (29 bp):
CTTTTCCTTTTTTTTCTTTTTTCCTTATT
Found at i:22719988 original size:18 final size:18
Alignment explanation
Indices: 22719949--22720005 Score: 55
Period size: 18 Copynumber: 3.1 Consensus size: 18
22719939 TTTCCTTATT
* *
22719949 TTTTCTTTTTCTCTTTT-C
1 TTTTCTTTTT-TTTTTTGA
22719967 TTTTCTTTTTTTTTTTGA
1 TTTTCTTTTTTTTTTTGA
22719985 TTTT-TTGATTTTTTTTTGA
1 TTTTCTT--TTTTTTTTTGA
22720004 TT
1 TT
22720006 GATTTTTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
17 7 0.21
18 14 0.41
19 13 0.38
ACGTcount: A:0.05, C:0.09, G:0.05, T:0.81
Consensus pattern (18 bp):
TTTTCTTTTTTTTTTTGA
Found at i:22719989 original size:19 final size:19
Alignment explanation
Indices: 22719974--22720025 Score: 67
Period size: 15 Copynumber: 2.9 Consensus size: 19
22719964 TTCTTTTCTT
22719974 TTTTTTTTTGATTTTTTGA
1 TTTTTTTTTGATTTTTTGA
22719993 TTTTTTTTTGA----TTGA
1 TTTTTTTTTGATTTTTTGA
22720008 TTTTTTTTTGAATTTTTT
1 TTTTTTTTTG-ATTTTTT
22720026 TAAGTCTAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 9
0.76 0.00 0.24
Matches are distributed among these distances:
15 14 0.50
16 1 0.04
19 11 0.39
20 2 0.07
ACGTcount: A:0.12, C:0.00, G:0.10, T:0.79
Consensus pattern (19 bp):
TTTTTTTTTGATTTTTTGA
Found at i:22724776 original size:12 final size:12
Alignment explanation
Indices: 22724759--22724791 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
22724749 ATAAGTTGTA
22724759 AAATATATATAT
1 AAATATATATAT
22724771 AAATATATATAT
1 AAATATATATAT
*
22724783 ACATATATA
1 AAATATATA
22724792 CATATATGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (12 bp):
AAATATATATAT
Found at i:22727537 original size:16 final size:16
Alignment explanation
Indices: 22727492--22727537 Score: 58
Period size: 16 Copynumber: 2.9 Consensus size: 16
22727482 GTGATATTTA
*
22727492 AATATTTTATTGAAGT
1 AATATTTTATTTAAGT
*
22727508 AATATTTTAATTAAGAT
1 AATATTTTATTTAAG-T
22727525 AAT-TTTTATTTAA
1 AATATTTTATTTAA
22727538 TAAATTATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
16 22 0.85
17 4 0.15
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (16 bp):
AATATTTTATTTAAGT
Found at i:22742148 original size:16 final size:16
Alignment explanation
Indices: 22742127--22742194 Score: 102
Period size: 16 Copynumber: 4.2 Consensus size: 16
22742117 TTTGGTTCGC
22742127 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
22742143 TGTATTGGATTAGA-A
1 TGTATTGGATTAGAGA
*
22742158 GTGTATTGGATTAGAGG
1 -TGTATTGGATTAGAGA
*
22742175 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGA
22742191 TGTA
1 TGTA
22742195 ATAGCAAATC
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
15 1 0.02
16 48 0.98
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:22742166 original size:32 final size:32
Alignment explanation
Indices: 22742127--22742194 Score: 118
Period size: 32 Copynumber: 2.1 Consensus size: 32
22742117 TTTGGTTCGC
22742127 TGTATTGGATTAGAGATGTATTGGATTAGAAG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
* *
22742159 TGTATTGGATTAGAGGTGTATTGGATTAGAGG
1 TGTATTGGATTAGAGATGTATTGGATTAGAAG
22742191 TGTA
1 TGTA
22742195 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (32 bp):
TGTATTGGATTAGAGATGTATTGGATTAGAAG
Found at i:22742518 original size:157 final size:157
Alignment explanation
Indices: 22742324--22742632 Score: 537
Period size: 157 Copynumber: 2.0 Consensus size: 157
22742314 CCCTTAGCAT
*
22742324 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
22742389 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAACATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
22742454 TTTAATAAAATTCTTAATAATTTCCAG
131 TTTAATAAAATTCTTAATAATTTCCAG
* * * *
22742481 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTGATAAGATTATTAATATGAA
1 AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
22742546 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATACTTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
22742611 TTTAATAAAATTCTTAATAATT
131 TTTAATAAAATTCTTAATAATT
22742633 AATATTCTTA
Statistics
Matches: 143, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
157 143 1.00
ACGTcount: A:0.44, C:0.04, G:0.05, T:0.48
Consensus pattern (157 bp):
AAATTTATTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAACATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTTCCAG
Found at i:22747676 original size:22 final size:23
Alignment explanation
Indices: 22747635--22747681 Score: 69
Period size: 22 Copynumber: 2.1 Consensus size: 23
22747625 GTAACTAAGC
*
22747635 TTCAAAGAAATAATTAAATTTAT
1 TTCAAAGAAATAAATAAATTTAT
*
22747658 TTCAAA-AATTAAATAAATTTAT
1 TTCAAAGAAATAAATAAATTTAT
22747680 TT
1 TT
22747682 TTAAAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (23 bp):
TTCAAAGAAATAAATAAATTTAT
Found at i:22750371 original size:31 final size:31
Alignment explanation
Indices: 22750334--22750416 Score: 94
Period size: 31 Copynumber: 2.6 Consensus size: 31
22750324 TTTGGTAATT
* *
22750334 ATTTTTTGTCCAATTTAGTACTTGAACTTGAC
1 ATTTTTTCT-CAATTTAGTACATGAACTTGAC
*
22750366 ATTTTTTCTTAATTTAGTACATGAACTTGAC
1 ATTTTTTCTCAATTTAGTACATGAACTTGAC
** * *
22750397 ACATTTTCTTAATTTGGTAC
1 ATTTTTTCTCAATTTAGTAC
22750417 TTCATCTTTT
Statistics
Matches: 45, Mismatches: 6, Indels: 1
0.87 0.12 0.02
Matches are distributed among these distances:
31 37 0.82
32 8 0.18
ACGTcount: A:0.27, C:0.14, G:0.11, T:0.48
Consensus pattern (31 bp):
ATTTTTTCTCAATTTAGTACATGAACTTGAC
Found at i:22751683 original size:18 final size:18
Alignment explanation
Indices: 22751639--22751683 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
22751629 AAATTGGTAT
*
22751639 AATAAATTACACTAAATA
1 AATAAAATACACTAAATA
* **
22751657 TATTTAATACACTAAATA
1 AATAAAATACACTAAATA
22751675 AATAAAATA
1 AATAAAATA
22751684 AAATTTATAT
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (18 bp):
AATAAAATACACTAAATA
Found at i:22751896 original size:12 final size:13
Alignment explanation
Indices: 22751878--22751907 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
22751868 TATATATACA
22751878 ATATTTTTATTTT
1 ATATTTTTATTTT
22751891 -TATTTTTATTTT
1 ATATTTTTATTTT
22751903 ATATT
1 ATATT
22751908 GATTTTATAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (13 bp):
ATATTTTTATTTT
Found at i:22754191 original size:14 final size:14
Alignment explanation
Indices: 22754155--22754188 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
22754145 TCATCATTTG
22754155 CCTATAACCAAAAC
1 CCTATAACCAAAAC
22754169 CCTATAACCAAAAC
1 CCTATAACCAAAAC
22754183 CC-ATAA
1 CCTATAA
22754189 ACCCATACCA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.50, C:0.35, G:0.00, T:0.15
Consensus pattern (14 bp):
CCTATAACCAAAAC
Found at i:22754306 original size:10 final size:11
Alignment explanation
Indices: 22754290--22754314 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22754280 AGAGAATGGA
22754290 AAAAAAAAAAG
1 AAAAAAAAAAG
22754301 AAAAAAAAAAG
1 AAAAAAAAAAG
22754312 AAA
1 AAA
22754315 GAAAGTTAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:22754309 original size:15 final size:15
Alignment explanation
Indices: 22754289--22754318 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
22754279 AAGAGAATGG
22754289 AAAAAAAAAAAGAAA
1 AAAAAAAAAAAGAAA
*
22754304 AAAAAAAGAAAGAAA
1 AAAAAAAAAAAGAAA
22754319 GTTAAAACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAAAAAAAGAAA
Found at i:22756075 original size:46 final size:46
Alignment explanation
Indices: 22755968--22756128 Score: 240
Period size: 46 Copynumber: 3.6 Consensus size: 46
22755958 TACGTATGAT
* *
22755968 CACTTATCAC-TTGTC-CCTGATCAGATAAGTGTAGCT-AGGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
* * *
22756011 CACTTATCACTTTGTCACTTGATCAAATAAGTGTACCTAAAGCTAT
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
*
22756057 CACTTATCACTTTTTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
1 CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
22756103 CACTTATCACTTTGTCAC-TGATCAGA
1 CACTTATCACTTTGTCACTTGATCAGA
22756129 AGTATTCAAA
Statistics
Matches: 105, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
43 10 0.10
44 5 0.05
45 26 0.25
46 64 0.61
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.34
Consensus pattern (46 bp):
CACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCTAAAGCTAC
Found at i:22758685 original size:18 final size:18
Alignment explanation
Indices: 22758647--22758687 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
22758637 AAAAATTCAG
* *
22758647 AAAAAATATATAAAATCT
1 AAAAAACATATAAAATAT
*
22758665 AAAAAACATATAAATTAT
1 AAAAAACATATAAAATAT
22758683 AAAAA
1 AAAAA
22758688 TAAAATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (18 bp):
AAAAAACATATAAAATAT
Found at i:22758886 original size:19 final size:20
Alignment explanation
Indices: 22758855--22758893 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
22758845 AAGTTTAAAT
*
22758855 ACATTTTTAAAATTTTTATA
1 ACATTTTTAAAATTTGTATA
22758875 ACATTTTT-AAATTTGTATA
1 ACATTTTTAAAATTTGTATA
22758894 TATTATTTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.05, G:0.03, T:0.54
Consensus pattern (20 bp):
ACATTTTTAAAATTTGTATA
Found at i:22764745 original size:20 final size:21
Alignment explanation
Indices: 22764699--22764746 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 21
22764689 TCATTTAATT
*
22764699 AATT-TTTTTTAAATTTTAAA
1 AATTATTTTTTAAATATTAAA
* *
22764719 AAATATTTTTTAAA-ATTACA
1 AATTATTTTTTAAATATTAAA
22764739 AATTATTT
1 AATTATTT
22764747 AAAAAATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
20 14 0.61
21 9 0.39
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
AATTATTTTTTAAATATTAAA
Found at i:22766777 original size:7 final size:7
Alignment explanation
Indices: 22766758--22766804 Score: 51
Period size: 7 Copynumber: 6.4 Consensus size: 7
22766748 ATAAATTCAC
22766758 TATAATAA
1 TATAAT-A
22766766 TATAATA
1 TATAATA
22766773 TATAATA
1 TATAATA
22766780 TATAAT-
1 TATAATA
*
22766786 TAATATTA
1 T-ATAATA
22766794 TATAAGTA
1 TATAA-TA
22766802 TAT
1 TAT
22766805 TTTTATATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
6 1 0.03
7 21 0.62
8 12 0.35
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (7 bp):
TATAATA
Found at i:22774628 original size:2 final size:2
Alignment explanation
Indices: 22774621--22774659 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
22774611 CTCCTTTCAT
*
22774621 TC TC TC TC TC TC TT TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
22774660 TCACCACACA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54
Consensus pattern (2 bp):
TC
Found at i:22783101 original size:72 final size:73
Alignment explanation
Indices: 22782962--22784411 Score: 1250
Period size: 72 Copynumber: 20.3 Consensus size: 73
22782952 TCCTTAGGTA
* * * * * *
22782962 CCTCTTCAAGTTCCTTATTTTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAAGACTTTCC-TC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
22783026 TTTGGTTG
66 TTTGGGTG
* *
22783034 CCT-TTCCAGGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTTCCTCAATACTCTCC-C
1 CCTCTT-CAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCAC
*
22783097 CTTTGGGTT
65 CTTTGGGTG
* * * * *
22783106 CCTCTTCAGGTTCCTTAGTT-TCAACCAGCCTTGATTTTGGTACATTTTCCTCAACACTC-CC-C
1 CCTCTTCAGGTTCCTT-CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCAC
*
22783168 TTCTTGGGTG
65 CT-TTGGGTG
** * * *** * *
22783178 TGTCTTCAGGTTCCTTCTTCTCGATCAACTTTGGTTTCCATACCTTCTT-CTTAATACTCTCCAC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCAC
* *
22783242 C-TTAGGTA
65 CTTTGGGTG
* * * * * * * *
22783250 TCTCTCCAAGTTCCTTCTTCTCAACCAACTTTGATTTTGGTGCTTTTTCCTCAACCCTCTCCTCC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
22783315 -TTGGGTG
66 TTTGGGTG
* * * * **
22783322 CCTCATCAGGTTTCTGCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCATCGGTCTCCACC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
22783387 -TTGGGTA
66 TTTGGGTG
* * * * * * ** * *
22783394 ACTCTTTAGGTTCCTTATTCTCAATCAACTTTGGTTTCGGTA-ATTTCTTTTCAACACCCTCCAG
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT-TCCTCAACACTCTCCAC
*
22783458 C-TTGGGTA
65 CTTTGGGTG
* * * * * *
22783466 TCTCTTCAGGTTCCTTTTTCTCAACCAACTTTGATTTTGGTACTTTTTTCTCAACAGTCTCC-CC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
* *
22783530 CTTGGGTA
66 TTTGGGTG
* * * * *
22783538 CCTCTTTAGG-T--TTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCTATAATCTCCATC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
22783600 -TTGGGTA
66 TTTGGGTG
* * *
22783607 CCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGATACCTTTTCCTCAACACTCACC-CC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
* *
22783671 CTTGGATG
66 TTTGGGTG
* * * * * * ** *
22783679 CATCCTCAGTTTCCTTCTTCTCGATCAACTTCGGTTTTGAAACCTTCTT-CTCACCACTCTCCAC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCAC
*
22783743 C-TTGGGTA
65 CTTTGGGTG
* * * * * * *
22783751 TCACTCCAAGTTCCTTCTTCTCGACCAACTTTGGTTTTGGTACCTTTTCCTCAACATTCTCCCCC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
22783816 TTT-GATG
66 TTTGGGTG
* * * * * * *
22783823 CGTCTTTAGGTTCCTTCTTCTCGATCGACTTTTGTTTTGGCACCTTCTT-CTCAACACTCTCCAC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCAC
* *
22783887 C-TTGTGTA
65 CTTTGGGTG
** ** * * *
22783895 CCTCTTCAGGTTTTTTCTTCTCAACCAACTTCAGTTTTGCTACTTTTTCCTCAACATTCTCC-CC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
22783959 -TTGGGATG
66 TTTGGG-TG
* * * * * *
22783967 CCTCTTCAGGTTTCTTCTTCTCAACCAACTTTAGTGTTGGTA-CTTTCGCCTCACCAGTCTCCAC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT-TCCTCAACACTCTCCAC
*
22784031 C-TTGGGTA
65 CTTTGGGTG
* * *
22784039 CCTTTTCAGGTTCCTTCTTCTCAACCAACTTTGGCTTTGGTACCTTTTCCTCAACAATCTCCACC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
22784104 -TTGGGTG
66 TTTGGGTG
** * ** * *
22784111 TATCTTCAGGTTCCTTTTTCTTGATCAACTTTGGTTTTGGTGCCTTCTT-CTCAACACTCTCCAC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCAC
*
22784175 C-TTGGGTA
65 CTTTGGGTG
* ** * * *
22784183 CCTCTTCAAGTTTTTTCTTTTCAACCAACTTT-G--CT-G--CTTTTTCCTCAACACTCTCC-CC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
22784241 CTTGGGTG
66 TTTGGGTG
* * *
22784249 CCTCTTCAAGTTTCTTCTTCTCTACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
22784314 -TTGGGTA
66 TTTGGGTG
* * * * *
22784321 CCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCC
1 CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
*
22784386 -TTGGGTA
66 TTTGGGTG
* *
22784393 CCTCTTCAAGTTTCTTCTT
1 CCTCTTCAGGTTCCTTCTT
22784412 TGCAGCCATC
Statistics
Matches: 1112, Mismatches: 228, Indels: 76
0.79 0.16 0.05
Matches are distributed among these distances:
65 4 0.00
66 51 0.05
67 1 0.00
68 1 0.00
69 60 0.05
70 3 0.00
71 32 0.03
72 925 0.83
73 34 0.03
74 1 0.00
ACGTcount: A:0.15, C:0.30, G:0.13, T:0.42
Consensus pattern (73 bp):
CCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACC
TTTGGGTG
Found at i:22784438 original size:144 final size:144
Alignment explanation
Indices: 22782953--22784411 Score: 1406
Period size: 144 Copynumber: 10.2 Consensus size: 144
22782943 ACAGTCTTCT
* * * * *
22782953 CCTTAGGTACCTCTTCAAGTTCCTTATTTTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAAGA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * * * * *
22783018 CTTTCCTCTTTGGTTGCCT-TTCCAGGTTCCTTCTTCTCAACCAACTTTAGTTTTGGTACCTTTT
66 CTCTCCACCTTGGGTACCTCTT-CAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTT
*
22783082 CCTCAATACTCTCCC
130 CCTCAACACTCTCCC
* * * * * * *
22783097 CTTTGGGTTCCTCTTCAGGTTCCTTAGTT-TCAACCAGCCTTGATTTTGGTACATTTTCCTCAAC
1 CCTTGGGTACCTCTTCAGGTTCCTT-CTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAAC
* ** *** * * ***
22783161 ACTCCCCTTCTTGGGTGTGTCTTCAGGTTCCTTCTTCTCGATCAACTTTGGTTTCCATACCTTCT
65 ACTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-T
* * *
22783226 T-CTTAATACTCTCCA
129 TCCTCAACACTCTCCC
* * * * * * * *
22783241 CCTTAGGTATCTCTCCAAGTTCCTTCTTCTCAACCAACTTTGATTTTGGTGCTTTTTCCTCAACC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * * * *
22783306 CTCTCCTCCTTGGGTGCCTCATCAGGTTTCTGCTTCTCAACCAACTTTGGTTTTGGTACCTTTTC
66 CTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTC
* ** *
22783371 CTCATCGGTCTCCA
131 CTCAACACTCTCCC
* * * * * * **
22783385 CCTTGGGTAACTCTTTAGGTTCCTTATTCTCAATCAACTTTGGTTTCGGTA-ATTTCTTTTCAAC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT-TCCTCAAC
* * * * * *
22783449 ACCCTCCAGCTTGGGTATCTCTTCAGGTTCCTTTTTCTCAACCAACTTTGATTTTGGTACTTTTT
65 ACTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTT
* *
22783514 TCTCAACAGTCTCCC
130 CCTCAACACTCTCCC
* * *
22783529 CCTTGGGTACCTCTTTAGG-T--TTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCTATA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * * *
22783591 ATCTCCATCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGATACCTTTTC
66 CTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTC
*
22783656 CTCAACACTCACCC
131 CTCAACACTCTCCC
* * * * * * * * ** *
22783670 CCTTGGATGCATCCTCAGTTTCCTTCTTCTCGATCAACTTCGGTTTTGAAACCTTCTT-CTCACC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAAC
* * * * *
22783734 ACTCTCCACCTTGGGTATCACTCCAAGTTCCTTCTTCTCGACCAACTTTGGTTTTGGTACCTTTT
65 ACTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTT
*
22783799 CCTCAACATTCTCCC
130 CCTCAACACTCTCCC
* * * * * * * * * *
22783814 CCTTTGATGCGTCTTTAGGTTCCTTCTTCTCGATCGACTTTTGTTTTGGCACCTTCTT-CTCAAC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAAC
* ** ** * *
22783878 ACTCTCCACCTTGTGTACCTCTTCAGGTTTTTTCTTCTCAACCAACTTCAGTTTTGCTACTTTTT
65 ACTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTT
*
22783943 CCTCAACATTCT-CC
130 CCTCAACACTCTCCC
* * * * * *
22783957 CCTTGGGATGCCTCTTCAGGTTTCTTCTTCTCAACCAACTTTAGTGTTGGTA-CTTTCGCCTCAC
1 CCTTGGG-TACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT-TCCTCAA
* * *
22784021 CAGTCTCCACCTTGGGTACCTTTTCAGGTTCCTTCTTCTCAACCAACTTTGGCTTTGGTACCTTT
64 CACTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTT
* *
22784086 TCCTCAACAATCTCCA
129 TCCTCAACACTCTCCC
*** * ** * *
22784102 CCTTGGGTGTATCTTCAGGTTCCTTTTTCTTGATCAACTTTGGTTTTGGTGCCTTCTT-CTCAAC
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTT-TTCCTCAAC
* ** * * *
22784166 ACTCTCCACCTTGGGTACCTCTTCAAGTTTTTTCTTTTCAACCAACTTT-G--CT-G--CTTTTT
65 ACTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTT
22784225 CCTCAACACTCTCCC
130 CCTCAACACTCTCCC
* * * *
22784240 CCTTGGGTGCCTCTTCAAGTTTCTTCTTCTCTACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
* * *
22784305 CTCTCCACCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTG
66 CTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTC
* *
22784370 CTCAACACTTTCCT
131 CTCAACACTCTCCC
* *
22784384 CCTTGGGTACCTCTTCAAGTTTCTTCTT
1 CCTTGGGTACCTCTTCAGGTTCCTTCTT
22784412 TGCAGCCATC
Statistics
Matches: 1072, Mismatches: 219, Indels: 48
0.80 0.16 0.04
Matches are distributed among these distances:
137 2 0.00
138 114 0.11
139 1 0.00
140 1 0.00
141 112 0.10
142 6 0.01
143 19 0.02
144 797 0.74
145 19 0.02
146 1 0.00
ACGTcount: A:0.15, C:0.30, G:0.13, T:0.42
Consensus pattern (144 bp):
CCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
CTCTCCACCTTGGGTACCTCTTCAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGTACCTTTTC
CTCAACACTCTCCC
Found at i:22784539 original size:117 final size:110
Alignment explanation
Indices: 22784344--22785363 Score: 801
Period size: 111 Copynumber: 9.0 Consensus size: 110
22784334 CTTCTTCTCA
* *
22784344 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCC-TGGTTACCTCTTCAGGTTTCTT
* * * * *
22784409 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCG
65 CTTTTCAG-CAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C-TTTCG
* * * ** *
22784461 ACCAACTTTGGTTTGGGCATCTTTTGCTGAATGCTTTCCT-C-GGTTACCTCTTTAGGTTTCTTC
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTGGTTACCTCTTCAGGTTTCTTC
* * *
22784524 TGTTCAGACAACATCAGTTTTGGTACTTTCTCAGCTTCAGC-ATCG
66 TTTTCAG-CAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTTCG
* *
22784569 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCC-TGGTTACCTCTTCAGGTTTCTT
* *
22784634 CTTTTCTGCCAACATCAGTTTTGGCACCTTCTCAGCTTCAGCTTT-G
65 CTTTTCAG-CAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTTCG
* * *
22784680 ACCAACTTTGGTTTTGGCAACTTTTGCTCAACACTTTCCTCCTTGGGTAACTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCC-TGGTTACCTCTTCAGGTTTCTT
* * * * * **
22784745 ATTTTCAACCAATATCAATTGTGGTACCTTCTCTTCTTCAGC-TTCG
65 CTTTTC-AGCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTTCG
* * * *
22784791 AGCAACTGTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCC-TGGTTACCTCTTCAGGTTTCTT
** * *
22784856 CAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
65 CTTTTCAG-CAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C-TTTCG
* * **
22784908 ACCAAATTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCC-TGGTTACCTCTTCAGGTTTCTT
*
22784973 CTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCG
65 CTTTTCAG-CAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTT-----TCG
* * ***
22785025 ACCAGCTTTGGTTTTGGCCCCTTTTGCTCAATGGTTTCCTCCT-G-TACCTCTTCAGGTTTCTTC
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTGGTTACCTCTTCAGGTTTCTTC
* * * *
22785088 TTTTC-G--GC-T-AGTTTTGGTACCTTCTCATCTTCTGC-TTCA
66 TTTTCAGCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTTCG
* * ** ** * * ** **
22785127 ACTTCAGC-CTCCTTTTCAACCAACTTTTGTTTTGGCGCCTTTTGCTCAACACTTTCCTCCTTGG
1 AC--CAACTTTGGTTTT--GGCACCTTTTG--CT--CAACACTT--T---C-C--T-C-C--TGG
* *
22785191 TTACCTCTTCAGGTTTCTTCTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGC-TTC
46 TTACCTCTTCAGGTTTCTTCTTTTCAG-CAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTTC
*
22785255 T
110 G
** *** *
22785256 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCATGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTGGT-TACCTCTTCAGGTTTCTT
** * *
22785321 CTTTTCAGCCAATTTCAGTTTTGGTACCTTGTCATCTTCAGCT
65 CTTTTCAG-CAACATCAGTTTTGGTACCTTCTCAGCTTCAGCT
22785364 GCGACTTCAG
Statistics
Matches: 736, Mismatches: 118, Indels: 103
0.77 0.12 0.11
Matches are distributed among these distances:
102 4 0.01
103 5 0.01
104 4 0.01
105 7 0.01
107 2 0.00
108 62 0.08
109 5 0.01
110 6 0.01
111 295 0.40
112 4 0.01
113 3 0.00
114 77 0.10
115 3 0.00
116 3 0.00
117 174 0.24
118 1 0.00
119 1 0.00
120 1 0.00
121 1 0.00
122 6 0.01
123 24 0.03
124 2 0.00
126 8 0.01
127 4 0.01
128 6 0.01
129 28 0.04
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (110 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTGGTTACCTCTTCAGGTTTCTTC
TTTTCAGCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTTCG
Found at i:22784666 original size:111 final size:111
Alignment explanation
Indices: 22784344--22785092 Score: 844
Period size: 111 Copynumber: 6.6 Consensus size: 111
22784334 CTTCTTCTCA
*
22784344 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * *
22784409 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C--TTCG
* * * ** * *
22784461 ACCAACTTTGGTTTGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * *
22784523 CTGTTCAGACAACATCAGTTTTGGTACTTTCTCAGCTTCAGCATCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
*
22784569 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
22784634 CTTTTCTGCCAACATCAGTTTTGGCACCTTCTCAGCTTCAGCTTTG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
* *
22784680 ACCAACTTTGGTTTTGGCAACTTTTGCTCAACACTTTCCTCCTTGGGTAACTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * * **
22784745 ATTTTCAACCAATATCAATTGTGGTACCTTCTCTTCTTCAGCTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
* * * * *
22784791 AGCAACTGTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
** * *
22784856 CAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C--TTCG
* * ** *
22784908 ACCAAATTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
*
22784973 CTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC-T-----TCG
* * ***
22785025 ACCAGCTTTGGTTTTGGCCCCTTTTGCTCAATGGTTTCCTCC-T--GTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
22785087 CTTTTC
66 CTTTTC
22785093 GGCTAGTTTT
Statistics
Matches: 539, Mismatches: 79, Indels: 31
0.83 0.12 0.05
Matches are distributed among these distances:
108 38 0.07
109 1 0.00
110 1 0.00
111 246 0.46
112 2 0.00
113 1 0.00
114 75 0.14
115 1 0.00
116 2 0.00
117 172 0.32
ACGTcount: A:0.15, C:0.28, G:0.16, T:0.41
Consensus pattern (111 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
Found at i:22785430 original size:240 final size:238
Alignment explanation
Indices: 22784679--22785620 Score: 1165
Period size: 240 Copynumber: 4.0 Consensus size: 238
22784669 CTTCAGCTTT
* * *
22784679 GACCAACTTTGGTTTTGGCAACTTTTGCTCAACACTTTCCTCCTTGGGTAACTCTTCAGGTTTCT
1 GACCAACTTT-GTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
* * ** * * * ** * * *
22784744 TATTTTCAACCAATATCAATTGTGGTACCTTCTCTTCTTCAGCTTCGAGCAACTGTGGTTTTGGC
65 TCTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGCTTCTACCAACTTTGGTTTTGGC
*** * * * ** *
22784809 ACCTTTTGCTCAACACTTTCCT-C-CTTGGTTATCTCTTCAAGTTTCTTCAGTTCAGCC-ATCAT
130 ACCTTTTGCTCAATGTTTTCCTCCACCT-G-TACCTCTTCATGTTTCTTCTTTTCAGCCAAT-TT
*
22784871 CTGTTTTGGTA-C--CT--TC-TCAG-----CTTCAGCCTCCTTTTC
192 CAGTTTTGGTACCTTCTCATCTTCAGCTTCACTTCAGCCTCCTTTTC
* * **
22784907 GACCAAATTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
1 GACCAACTTT-GTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
* *
22784972 TCTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAGCTTTGGT
65 TCTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGCTT---C-T--ACCAACTTTGGT
* * * *
22785037 TTTGGCCCCTTTTGCTCAATGGTTTCCT---CCTGTACCTCTTCAGGTTTCTTCTTTTC-GGC--
124 TTTGGCACCTTTTGCTCAATGTTTTCCTCCACCTGTACCTCTTCATGTTTCTTCTTTTCAGCCAA
*
22785096 --T-AGTTTTGGTACCTTCTCATCTTCTGCTTCAACTTCAGCCTCCTTTTC
189 TTTCAGTTTTGGTACCTTCTCATCTTCAGCTTC-ACTTCAGCCTCCTTTTC
* *
22785144 AACCAACTTTTGTTTTGGCGCCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
1 GACCAAC-TTTGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
22785209 TCTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGCTTCTACCAACTTTGGTTTTGGC
65 TCTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGCTTCTACCAACTTTGGTTTTGGC
*
22785274 ACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCATGTTTCTTCTTTTCAGCCAATTTCAG
130 ACCTTTTGCTCAATGTTTTCCTCCACCTGTACCTCTTCATGTTTCTTCTTTTCAGCCAATTTCAG
* *
22785339 TTTTGGTACCTTGTCATCTTCAGCTGCGACTTCAGCCTCCTTTTC
195 TTTTGGTACCTTCTCATCTTCAGCTTC-ACTTCAGCCTCCTTTTC
*
22785384 GACCAACTTCTGTTTTGGCACCTTTTGCTCAACACTTTCGTCCTTGGTTACCTCTTCAGGTTTCT
1 GACCAACTT-TGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
* *
22785449 TCTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCATCTTCTACCAACTTTGGTTTTGGC
65 TCTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGCTTCTACCAACTTTGGTTTTGGC
*
22785514 ACCTTTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTTCTTTTCAGCCAATTTCAG
130 ACCTTTTGCTCAATGTTTTCCTCCACCTGTACCTCTTCATGTTTCTTCTTTTCAGCCAATTTCAG
*
22785579 TTTTGGTACCTTCTCAGCTTCAGCTTCAGCTTCAGCCTCCTT
195 TTTTGGTACCTTCTCATCTTCAGCTTCA-CTTCAGCCTCCTT
22785621 GGGTACCTTT
Statistics
Matches: 626, Mismatches: 58, Indels: 48
0.86 0.08 0.07
Matches are distributed among these distances:
225 9 0.01
226 2 0.00
228 97 0.15
230 4 0.01
231 60 0.10
232 1 0.00
233 3 0.00
234 61 0.10
235 2 0.00
237 115 0.18
238 3 0.00
239 4 0.01
240 265 0.42
ACGTcount: A:0.15, C:0.29, G:0.14, T:0.42
Consensus pattern (238 bp):
GACCAACTTTGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACGTCAGTTTTGGTACTTTCTCAGCTTCAGCTTCTACCAACTTTGGTTTTGGCA
CCTTTTGCTCAATGTTTTCCTCCACCTGTACCTCTTCATGTTTCTTCTTTTCAGCCAATTTCAGT
TTTGGTACCTTCTCATCTTCAGCTTCACTTCAGCCTCCTTTTC
Found at i:22785489 original size:129 final size:129
Alignment explanation
Indices: 22785256--22785489 Score: 330
Period size: 129 Copynumber: 1.8 Consensus size: 129
22785246 TTCAGCTTCT
** *
22785256 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCATGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCACCTGTACCTCTTCAGGTTTCTT
** * *
22785321 CTTTTCAGCCAATTTCAGTTTTGGTACCTTGTCATCTTCAGCTGCGACTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTGCGACTTCAGCCTCCTTTTCG
* *
22785385 ACCAACTTCT-GTTTTGGCACCTTTTGCTCAACACTTTCGT-C-CTTGGTTACCTCTTCAGGTTT
1 ACCAACTT-TGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCACCT-G-TACCTCTTCAGGTTT
*
22785447 CTTCTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCA
63 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCA
22785490 TCTTCTACCA
Statistics
Matches: 92, Mismatches: 10, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
127 2 0.02
128 2 0.02
129 87 0.95
130 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.14, T:0.42
Consensus pattern (129 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCACCTGTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTGCGACTTCAGCCTCCTTTTCG
Found at i:22785564 original size:111 final size:111
Alignment explanation
Indices: 22785385--22785605 Score: 313
Period size: 111 Copynumber: 2.0 Consensus size: 111
22785375 CTCCTTTTCG
*
22785385 ACCAACTTCTGTTTTGGCACCTTTTGCTCAACACTTTCGTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTCTGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
* *
22785450 CTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCATCTTCT
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCT
*** *
22785496 ACCAACTT-TGGTTTTGGCACCTTTTGCTCAATGTTTTCCTCCATCT-G-TACCTCTTCATGTTT
1 ACCAACTTCT-GTTTTGGCACCTTTTGCTCAACACTTTCCTCC-T-TGGTTACCTCTTCAGGTTT
**
22785558 CTTCTTTTCAGCCAATTTCAGTTTTGGTACCTTCTCAGCTTCAGCTTC
63 CTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTC
22785606 AGCTTCAGCC
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
110 1 0.01
111 94 0.96
112 2 0.02
113 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.13, T:0.44
Consensus pattern (111 bp):
ACCAACTTCTGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCT
Found at i:22785831 original size:138 final size:138
Alignment explanation
Indices: 22785661--22785940 Score: 382
Period size: 138 Copynumber: 2.0 Consensus size: 138
22785651 TAACTCTGGT
* ** * * *
22785661 TTTGGTACCTTTTCCTCAACAATCTCCACCTTGGGTGTGTCTTCAGGTTCCTTTTTCTCGATCAA
1 TTTGCTACCTTTTCCTCAACAATCTCCACCTTGGGTGCCTCTTCAAGTTCCTTCTTCTCGACCAA
* ** *
22785726 CTTTGGTTTTGGTGCCTTCTT-CTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTTTTTCTTT
66 CTTTGGTTTTGGTACCTT-TTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTC
22785790 TCAACCAAA
130 TCAACCAAA
* * * * *
22785799 TTTGCTACTTTTTCCTCAACACTCTCCCCCTTGGGTGCCTCTTCAAGTTTCTTCTTCTCTACCAA
1 TTTGCTACCTTTTCCTCAACAATCTCCACCTTGGGTGCCTCTTCAAGTTCCTTCTTCTCGACCAA
* *
22785864 CTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTTAGGTTCCTTCTTCT
66 CTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTCT
*
22785929 CAACCAAC
131 CAACCAAA
22785937 TTTG
1 TTTG
22785941 GTTTTGGCAC
Statistics
Matches: 123, Mismatches: 18, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
137 2 0.02
138 121 0.98
ACGTcount: A:0.15, C:0.31, G:0.12, T:0.42
Consensus pattern (138 bp):
TTTGCTACCTTTTCCTCAACAATCTCCACCTTGGGTGCCTCTTCAAGTTCCTTCTTCTCGACCAA
CTTTGGTTTTGGTACCTTTTCCTCAACACTCTCCACCTTGGGTACCTCTTCAAGTTCCTTCTTCT
CAACCAAA
Found at i:22786025 original size:72 final size:72
Alignment explanation
Indices: 22785617--22785998 Score: 409
Period size: 72 Copynumber: 5.4 Consensus size: 72
22785607 GCTTCAGCCT
* * ** * * *
22785617 CCTTGGGTACCTTTTCAGGTGCCTTCTTCTCAACTAACTCTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAAGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
*
22785682 ATCTCCA
66 CTCTCCA
*** * * * * * **
22785689 CCTTGGGTGTGTCTTCAGGTTCCTTTTTCTCGATCAACTTTGGTTTTGGTGCCTTCTT-CTCAAC
1 CCTTGGGTACCTCTTCAAGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTT-TTCCTCAAC
22785753 ACTCTCCA
65 ACTCTCCA
* * * * *
22785761 CCTTGGGTACCTCTTCAAGTTTTTTCTTTTCAACCAAATTT-G--CT---ACTTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAAGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
*
22785820 CTCTCCC
66 CTCTCCA
* * *
22785827 CCTTGGGTGCCTCTTCAAGTTTCTTCTTCTCTACCAACTTTGGTTTTGGTACCTTTTCCTCAACA
1 CCTTGGGTACCTCTTCAAGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
22785892 CTCTCCA
66 CTCTCCA
* * * *
22785899 CCTTGGGTACCTCTTTAGGTTCCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTGCTCAACA
1 CCTTGGGTACCTCTTCAAGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
* *
22785964 CTTTCCT
66 CTCTCCA
22785971 CCTTGGGTACCTCTTCAAGTTTCTTCTT
1 CCTTGGGTACCTCTTCAAGTTTCTTCTT
22785999 TGCAGCCATC
Statistics
Matches: 255, Mismatches: 47, Indels: 16
0.80 0.15 0.05
Matches are distributed among these distances:
65 2 0.01
66 52 0.20
67 1 0.00
69 2 0.01
71 1 0.00
72 195 0.76
73 2 0.01
ACGTcount: A:0.14, C:0.30, G:0.13, T:0.42
Consensus pattern (72 bp):
CCTTGGGTACCTCTTCAAGTTTCTTCTTCTCAACCAACTTTGGTTTTGGCACCTTTTCCTCAACA
CTCTCCA
Found at i:22786253 original size:111 final size:111
Alignment explanation
Indices: 22785931--22787906 Score: 1260
Period size: 111 Copynumber: 17.0 Consensus size: 111
22785921 CTTCTTCTCA
*
22785931 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * *
22785996 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C--TTCG
* * * ** * *
22786048 ACCAACTTTGGTTTGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * *
22786110 CTGTTCAG-AAGACATCAGTTTTGGTACTTTCTCAGCTTCAGCATCG
66 CTTTTCAGCCA-ACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
*
22786156 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTTAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
22786221 CTTTTCTGCCAACATCAGTTTTGGCACCTTCTCAGCTTCAGCTTTG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
* *
22786267 ACCAACTTTGGTTTTGGCAACTTTTGCTCAACACTTTCCTCCTTGGGTAACTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * * **
22786332 ATTTTCAACCAATATCAATTGTGGTACCTTCTCTTCTTCAGCTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
* * * * *
22786378 AGCAACTGTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
** * *
22786443 CAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C--TTCG
* * ** *
22786495 ACCAAATTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
*
22786560 CTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGC-T-----TCG
* * ***
22786612 ACCAGCTTTGGTTTTGGCCCCTTTTGCTCAATGGTTTCCTCC-T--GTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * *
22786674 CTTTTC-G---GC-T-AGTTTTGGTACCTTCTCATCTTCTGCTTCA
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
* * ** ** * * *** * * ****** *
22786714 ACTTCAGC-CTCCTTTTCAACCAACTTTTGTTTTGGCGCCTTTTGCTCAACACTTTCCTCCTT--
1 AC--CAACTTTGGTTTT--GGCACCTTTTG-CTCAAC-AC-TTTCCTCCTTGGGTACCT-CTTCA
*** * * * *** * * *
22786776 GGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAAC-GTCTGTTTTGGTACTT-TC-TCAGCTTCAG
58 GGTT---TCTTC----TT-TTC-AGCCA-ACATCAG--T-TTTGGTACCTTCTCAGC--TTC-AG
*
22786838 CTTCT
107 CTTCG
** ****
22786843 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * ** *
22786908 CTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG---C-T--T-C-----G
* * * *
22786966 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTTTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * *
22787031 CTTTTTAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCATCTTCT
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
*** * ** *
22787077 ACCAACTTTGGTTTTGGCACCTTTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* ** *
22787142 CCTTTCAGCCAATTTCAGTTTTGGTACCTTCTCATCTTCAGCTGT-G
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCT-TCG
* * ** * * *
22787188 ACTTCAGC-CTCCTTTTCGACCAACTTCTGTTTTATTACCTTTTGCTCAACGCTTTCCTCCTTGG
1 AC--CAACTTTGGTTTT-G-GC-AC--C----TT-TT-GC--T----CAACACTTTCCTCCTTGG
* * * *
22787252 TTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTTAGCTTCATCTTCG
47 GTACCTCTTCAGGTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
* * * *
22787317 ACCAACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* *
22787382 CTTTTCGGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAG
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTC-G
** * *
22787429 CCTCCTTTACGACTAACTTTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCT
1 --------AC--C-AACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCT
** * *
22787494 TCAGGTTTCTTCTTTTCAGCCAATGTCAGTTTTGTTACCTTCTCAGCTTCAGTCTCCTTTTG
55 TCAGGTTTCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG----C-TTCG
* * * * *
22787556 AACCATCCTTGGTTCTGGCACCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCAGGTTTCT
1 -ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * ** *
22787621 TCTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
65 TCTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG---C-T--T-C-----G
* * *
22787680 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* ** * *
22787745 CTTTTCAGCCAACTTCAGTTTCAGTACCTTCTCAGCTTCAGTCTCCTT
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG-CTTC-G
** ** * *
22787793 TTCAACTGGCATTGGTTTTGGCACCACTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCGGGTT
1 ACCAACT----TTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTT
* * * *
22787858 TCTTCTCTTCAGCCAACTTCAGTTTTGATGCCTT-TGCAGCTTCAGCTTC
62 TCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCT-CAGCTTCAGCTTC
22787907 AGCTGCAGTT
Statistics
Matches: 1457, Mismatches: 283, Indels: 239
0.74 0.14 0.12
Matches are distributed among these distances:
102 4 0.00
103 5 0.00
104 4 0.00
105 7 0.00
106 1 0.00
107 1 0.00
108 68 0.05
109 2 0.00
110 6 0.00
111 415 0.28
112 21 0.01
113 19 0.01
114 77 0.05
115 7 0.00
116 14 0.01
117 354 0.24
118 8 0.01
119 3 0.00
120 6 0.00
121 9 0.01
122 6 0.00
123 286 0.20
124 6 0.00
125 6 0.00
126 11 0.01
127 12 0.01
128 21 0.01
129 78 0.05
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (111 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCG
Found at i:22787007 original size:123 final size:123
Alignment explanation
Indices: 22786843--22787907 Score: 1040
Period size: 123 Copynumber: 8.9 Consensus size: 123
22786833 TTCAGCTTCT
** ****
22786843 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * *
22786908 CTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
66 CTTTTCAGCCAACTTCAGTTTTGGTAACTTCTCAGCTTCAGCTTCATCCTCCTTTTCG
* * * *
22786966 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTTTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *
22787031 CTTTTTAGCCAACATCAGTTTTGGT-ACTT-T---C-TCAGCTTCA---T-C--TTCT
66 CTTTTCAGCCAACTTCAGTTTTGGTAACTTCTCAGCTTCAGCTTCATCCTCCTTTTCG
*** * ** *
22787077 ACCAACTTTGGTTTTGGCACCTTTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * *
22787142 CCTTTCAGCCAATTTCAGTTTTGGTACCTTCTCATCTTCAGCTGTGACTTCAGCCTCCTTTTCG
66 CTTTTCAGCCAACTTCAGTTTTGGTAACTTCTCAGCTTCA-----G-CTTCATCCTCCTTTTCG
*** * *
22787206 ACCAACTTCT-GTTTTATTACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
1 ACCAACTT-TGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
*
22787270 TCTTTTCAGCCAACTTCAGTTTTGGT-AC--CT--TCTT-AGCTTCA---T-C--TTCG
65 TCTTTTCAGCCAACTTCAGTTTTGGTAACTTCTCAGCTTCAGCTTCATCCTCCTTTTCG
* * * *
22787317 ACCAACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* ** * * *
22787382 CTTTTCGGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTACG
66 CTTTTCAGCCAACTTCAGTTTTGGTAACTTCTCAGCTTCAGCTTCATCCTCCTTTTCG
* ** * *
22787440 ACTAACTTTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* *
22787505 CTTTTCAGCCAA-TGTCAGTTTTGTTACCTTCTCAGCTTCAG-----T-CTCCTTTT-G
66 CTTTTCAGCCAACT-TCAGTTTTGGTAACTTCTCAGCTTCAGCTTCATCCTCCTTTTCG
* * * * *
22787556 AACCATCCTTGGTTCTGGCACCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCAGGTTTCT
1 -ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
* * * *
22787621 TCTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
65 TCTTTTCAGCCAACTTCAGTTTTGGTAACTTCTCAGCTTCAGCTTCATCCTCCTTTTCG
* * *
22787680 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
** * *
22787745 CTTTTCAGCCAACTTCAGTTTCAGTACCTTCTCAGCTTCAG-----T-CTCCTTTTCA
66 CTTTTCAGCCAACTTCAGTTTTGGTAACTTCTCAGCTTCAGCTTCATCCTCCTTTTCG
*** * ** * *
22787797 ACTGGCATTGGTTTTGGCACCACTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCGGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * **
22787862 CTCTTCAGCCAACTTCAGTTTTGATGCCTT-TGCAGCTTCAGCTTCA
66 CTTTTCAGCCAACTTCAGTTTTGGTAACTTCT-CAGCTTCAGCTTCA
22787908 GCTGCAGTTT
Statistics
Matches: 775, Mismatches: 119, Indels: 97
0.78 0.12 0.10
Matches are distributed among these distances:
110 1 0.00
111 158 0.20
112 4 0.01
113 3 0.00
114 4 0.01
116 6 0.01
117 218 0.28
118 3 0.00
120 1 0.00
121 2 0.00
122 5 0.01
123 280 0.36
124 5 0.01
126 3 0.00
127 1 0.00
128 1 0.00
129 79 0.10
130 1 0.00
ACGTcount: A:0.15, C:0.28, G:0.14, T:0.42
Consensus pattern (123 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACTTCAGTTTTGGTAACTTCTCAGCTTCAGCTTCATCCTCCTTTTCG
Found at i:22787259 original size:363 final size:353
Alignment explanation
Indices: 22785931--22787903 Score: 1556
Period size: 363 Copynumber: 5.6 Consensus size: 353
22785921 CTTCTTCTCA
* * * *
22785931 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
1 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * * * * *
22785996 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCGACCAACTTTGGTT
66 CTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCA--CTCCTTTAC-ACTAACTTTGGTT
* * * * * *
22786061 TGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTT-CTGTTCAG-AAG
128 TTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCCT-TTCAGCCA-
** * * * *
22786121 ACATCAGTTTTGGTACTTTCTCAGCTTCAGCAT-C----G-ACCA-ACTTTGGTTTTGGCACCTT
191 ATGTCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTGAACCATAC-TTGGTTCTAGCACCTT
* * * * *
22786179 TTGCTCAACACTTTCCTCCTTGGGTACCTCTTTAGGTTTCTTCTTTTCTGCCAACATCAGTTTTG
255 TTGCTCAACGCTTTCCTCCTT-GGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAGTTTTG
* ** *
22786244 G-CACCT-TC----TCAGCTTCA----GC-TTT-G
319 GTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
* * * * *
22786267 ACCAACTTTGGTTTTGGCAACTTTTGCTCAACACTTTCCTCCTTGGGTAACTCTTCAGGTTTCTT
1 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * * * * * ** * *
22786332 ATTTTCAACCAATATCAATTGTGGTACCTTCTCTTCTTCA--GC-TT-CGAGC-AACTGTGGTTT
66 CTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCACTCCTTTAC-A-CTAACTTTGGTTT
** * **
22786392 TGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATC-TCTTCAAGTTTCTTCAGTTCAGCC-AT
129 TGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTA-CATCTTCAGGTTTCTTCCTTTCAGCCAAT
* * * * *
22786455 CATCTGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCG-ACCAAATTTGGTT-TGGGCACCTT
193 -GTCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTT-GAACCATACTTGGTTCT-AGCACCTT
* * *
22786518 TTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAACGTCAGTTTTG
255 TTGCTCAACGCTTTCCTCCTTGG-TACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAGTTTTG
** * * *
22786583 GTACCTTCTCAGCTTCAGCTTCAGCAT-C-----G
319 GTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
* * * ***
22786612 ACCAGCTTTGGTTTTGGCCCCTTTTGCTCAATGGTTTCCTCC-T--GTACCTCTTCAGGTTTCTT
1 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* * *** ** * * * * *
22786674 CTTTTCGGCTAGTTTTGGTACCTT-CTCATCTTCTGCTTCAACTTCAGCCTCCTTTTCAACCAAC
66 CTTTTCAGCCAACATCAGT--TTTGGT-A-CTT-T-C-TCAGCTTCA--CTCCTTTAC-ACTAAC
* * ** * *
22786738 TTTTGTTTTGGCGCCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTC
121 TTTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCCTTTC
* * * * * *
22786803 AGCCAACGTCTGTTTTGGTACTTTCTCAGCTTCAG----CTTCT--ACCA-ACTTTGGTTTTGGC
186 AGCCAATGTCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTGAACCATAC-TTGGTTCTAGC
* *
22786861 ACCTTTTGCTCAACGTTTTCCTCCACCT-GTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCA
250 ACCTTTTGCTCAACGCTTTCCT-C-CTTGGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCA
22786925 GTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
313 GTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
*
22786966 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTTTT
1 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
*
22787031 CTTTTTAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCA-T-CTTCTAC-C-AACTTTGGTTTT
66 CTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCACTCCTT-TACACTAACTTTGGTTTT
* * *
22787092 GGCACCTTTTGCTCAATGTTTTCCTCCATCT-G-TACCTCTTCATGTTTCTTCCTTTCAGCCAAT
130 GGCACCTTTTGCTCAATGCTTTCCTCC-T-TGGTTACATCTTCAGGTTTCTTCCTTTCAGCCAAT
* *
22787155 TTCAGTTTTGGTACCTTCTCATCTTCAGCTGTGACTTCAGCCTCCTTTTCG-ACCA-ACTTCTGT
193 GTCAGTTTTGGTA-C--CT--TC-TCA-----G-CTTCAGCCTCCTTTT-GAACCATACTT-GGT
* ** *
22787218 TTTATTACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAA
244 TCTAGCACCTTTTGCTCAACGCTTTCCTCCTTGG-TACCTCTTCAGGTTTCTTCTTTTCAGCAAA
** *
22787283 CTTCAGTTTTGGT-ACCT-TC---TT-AGCTTCA---T-C--TTCG
308 CTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
* * * * * * *
22787317 ACCAACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* *
22787382 CTTTTCGGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTACGACTAACT
66 CTTTTCAGCCAACATCAGTTTTGGTA-CTT-T---C-TCAGCTTCA--CTCCTTTAC-ACTAACT
*
22787447 TTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCTTTTCA
122 TTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCCTTTCA
* * * *
22787512 GCCAATGTCAGTTTTGTTACCTTCTCAGCTTCAGTCTCCTTTTGAACCATCCTTGGTTCTGGCAC
187 GCCAATGTCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTGAACCATACTTGGTTCTAGCAC
* * *
22787577 CATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAGTT
252 CTTTTGCTCAACGCTTTCCTCCTT-GGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAGTT
22787642 TTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
316 TTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGG
22787680 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
1 ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
* ** * * ** *
22787745 CTTTTCAGCCAACTTCAGTTTCAGTACCTTCTCAGCTTCAGTCTCCTTTTCAACTGGCATTGGTT
66 CTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCA--CTCCTTTAC-ACTAACTTTGGTT
** ** * * * *
22787810 TTGGCACCACTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCGGGTTTCTT-CTCTTCAGCCAA
128 TTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCCT-TTCAGCCAA
* *
22787874 CT-TCAGTTTTGATGCCTT-TGCAGCTTCAGC
192 -TGTCAGTTTTGGTACCTTCT-CAGCTTCAGC
22787904 TTCAGCTGCA
Statistics
Matches: 1335, Mismatches: 188, Indels: 207
0.77 0.11 0.12
Matches are distributed among these distances:
330 34 0.03
331 4 0.00
332 2 0.00
333 50 0.04
334 2 0.00
336 90 0.07
338 3 0.00
339 77 0.06
340 3 0.00
341 2 0.00
342 28 0.02
343 1 0.00
344 3 0.00
345 121 0.09
346 5 0.00
347 6 0.00
348 106 0.08
349 4 0.00
350 9 0.01
351 181 0.14
352 13 0.01
353 9 0.01
354 133 0.10
355 5 0.00
356 7 0.01
357 165 0.12
358 6 0.00
360 7 0.01
361 14 0.01
362 12 0.01
363 233 0.17
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (353 bp):
ACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCACTCCTTTACACTAACTTTGGTTTTG
GCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCCTTTCAGCCAATGTC
AGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTGAACCATACTTGGTTCTAGCACCTTTTGCTC
AACGCTTTCCTCCTTGGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAGTTTTGGTAAATT
CTCAGGTTCAGCTTCATCCTCCTTTTGG
Found at i:22787325 original size:240 final size:234
Alignment explanation
Indices: 22786266--22787909 Score: 1705
Period size: 240 Copynumber: 7.0 Consensus size: 234
22786256 CTTCAGCTTT
* * *
22786266 GACCAACTTTGGTTTTGGCAACTTTTGCTCAACACTTTCCTCCTTGGGTAACTCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
* * * * ** * * *
22786331 TATTTTCAACCAA-TATCAATTGTGGTACCTTCTCTTCTTCAGCTTCGAGCAACTGTGGTTTTGG
66 TCTTTTCAGCCAACT-TCAGTTTTGGTACCTTCTCAGCTTCATCTTCGACCAACTTTGGTTTTGG
** * * ** * *
22786395 CACCTTTTGCTCAACACTTTCCTCC-T-TGGTTATCTCTTCAAGTTTCTTCAGTTCAGCCATCAT
130 CACCTTTTGCTCAACGTTTTCCTCCATCT-G-TACCTCTTCAGGTTTCTTCTTTTCAGCCAACTT
*
22786458 CTGTTTTGGTACC-T-T---C-TCAGCTTCAGCCTCCTTTTC
193 CAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTTC
* * **
22786494 GACCAAATTTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
* * *
22786559 TCTTTTCAGCCAACGTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAGCTTTGGT
66 TCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGCTTCA---T---CTTCGACCAACTTTGGT
* * * *
22786624 TTTGGCCCCTTTTGCTCAATGGTTTCCT-C--CTGTACCTCTTCAGGTTTCTTCTTTTC-G---G
125 TTTGGCACCTTTTGCTCAACGTTTTCCTCCATCTGTACCTCTTCAGGTTTCTTCTTTTCAGCCAA
*
22786682 C-T-AGTTTTGGTACCTTCTCATCTTCTGCTTCAACTTCAGCCTCCTTTTC
190 CTTCAGTTTTGGTACCTTCTCA------GCTTCAGCTTCAGCCTCCTTTTC
* * *
22786731 AACCAACTTTTGTTTTGGCGCCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
* * * * *
22786796 TCTTTTCAGCCAACGTCTGTTTTGGTACTTTCTCAGCTTCAGCTTCTACCAACTTTGGTTTTGGC
66 TCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGCTTCATCTTCGACCAACTTTGGTTTTGGC
* *
22786861 ACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAG
131 ACCTTTTGCTCAACGTTTTCCTCCATCTGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAG
** * * *
22786926 TTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTG
196 TTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTTC
* * * * *
22786965 GACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTTT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
* * * *
22787030 TCTTTTTAGCCAACATCAGTTTTGGTACTTTCTCAGCTTCATCTTCTACCAACTTTGGTTTTGGC
66 TCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGCTTCATCTTCGACCAACTTTGGTTTTGGC
* * * *
22787095 ACCTTTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTTCCTTTCAGCCAATTTCAG
131 ACCTTTTGCTCAACGTTTTCCTCCATCTGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAG
*
22787160 TTTTGGTACCTTCTCATCTTCAGCTGTGACTTCAGCCTCCTTTTC
196 TTTTGGTACCTTCTCAGCTTCA-----G-CTTCAGCCTCCTTTTC
*** *
22787205 GACCAACTTCT-GTTTTATTACCTTTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTC
1 GACCAACTT-TGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTC
* *
22787269 TTCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTTAGCTTCATCTTCGACCAACTTTTGTTTTGG
65 TTCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGCTTCATCTTCGACCAACTTTGGTTTTGG
* ** * ** * * * **
22787334 CACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTTCTTTTCGGCCAAAATCA
130 CACCTTTTGCTCAACGTTTTCCTCCATCTGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCA
*
22787399 GTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTAC
195 GTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTTC
* ** *
22787439 GACTAACTTTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
* * * *
22787504 TCTTTTCAGCCAA-TGTCAGTTTTGTTACCTTCTCAGCTTCAGTCTCCTTTTGAACCATCCTTGG
66 TCTTTTCAGCCAACT-TCAGTTTTGGTACCTTCTCAGCTTCA---T-C-TTCG-ACCAACTTTGG
* * * * ** *
22787568 TTCTGGCACCATTTGCTCAACACTTTT-CTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCA
124 TTTTGGCACCTTTTGCTCAAC-GTTTTCCTCCATCTGTACCTCTTCAGGTTTCTTCTTTTCAGCC
** * * *
22787632 AACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTG
188 AACTTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTTC
* * * *
22787679 GACCAGCTTTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCT
1 GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
** * ***
22787744 TCTTTTCAGCCAACTTCAGTTTCAGTACCTTCTCAGCTTCAGTCTCCTTTTCAACTGGCATTGGT
66 TCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGCTTCA-TCTTC-GACCAACT----TTGGT
** * * ** * *
22787809 TTTGGCACCACTTGCTCAACACTTTT-CTCCTTGGGTACCTCTTCGGGTTTCTTCTCTTCAGCCA
125 TTTGGCACCTTTTGCTCAAC-GTTTTCCTCCATCTGTACCTCTTCAGGTTTCTTCTTTTCAGCCA
* *
22787873 ACTTCAGTTTTGATGCCTT-TGCAGCTTCAGCTTCAGC
189 ACTTCAGTTTTGGTACCTTCT-CAGCTTCAGCTTCAGC
22787910 TGCAGTTTCG
Statistics
Matches: 1199, Mismatches: 165, Indels: 92
0.82 0.11 0.06
Matches are distributed among these distances:
225 11 0.01
226 2 0.00
227 2 0.00
228 91 0.08
230 1 0.00
231 59 0.05
232 2 0.00
233 4 0.00
234 387 0.32
235 2 0.00
236 5 0.00
237 118 0.10
238 3 0.00
239 6 0.01
240 501 0.42
241 5 0.00
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (234 bp):
GACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCT
TCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGCTTCATCTTCGACCAACTTTGGTTTTGGC
ACCTTTTGCTCAACGTTTTCCTCCATCTGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAG
TTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTTC
Found at i:22787900 original size:474 final size:465
Alignment explanation
Indices: 22785931--22787903 Score: 2110
Period size: 474 Copynumber: 4.2 Consensus size: 465
22785921 CTTCTTCTCA
22785931 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
* * * * *
22785996 CTTTGCAGCCATCATCTGTTTTGGCACCTTCTCAGGTTCAGCCTCCTTTTCGACCAACTTTGGTT
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCGACCAACTTTGGTT
* * * * *
22786061 TGGGCATCTTTTGCTGAATGCTTTCCT-C--GGTTACCTCTTTAGGTTTCTTCTGTTCAG-AAGA
131 TGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCA-A
*
22786122 CATCAGTTTTGGTACTTTCTCAGCTTCAGCATC---GACCAACTTTGGTTTTGGCACCTTTTGCT
195 CATCAGTTTTGGTACCTTCTCAGCTTCAGCATCTTTGACCAACTTTGGTTTTGGCACCTTTTGCT
* * * *
22786184 CAACACTTTCCTCCTTGGGTACCTCTTTAGGTTTCTTCTTTTCTGCCAACATCAGTTTTGG-CAC
260 CAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTAAC
* *
22786248 --CT--TC-TCAGCTTCAG----C-TTT-GACCAACTTTGGTTTTGGCAACTTTTGCTCAACACT
325 TTCTCAGCTTCAGCTTCAGCCTCCTTTTCGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACT
* * * * * *
22786302 TTCCTCCTTGGGTAACTCTTCAGGTTTCTTATTTTCAACCAA-TATCAATTGTGGTACCTTCTCT
390 TTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACT-TCAGTTTTGGTACCTTCTCA
*
22786366 TCTTCAGCTTCG
454 GCTTCAGCTTCG
* * * *
22786378 AGCAACTGTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGTTATCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
** * * *
22786443 CAGTTCAGCCATCATCTGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCGACCAAATTTGGTT
66 CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCGACCAACTTTGGTT
22786508 TGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAAC
131 TGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAAC
* * * * * *
22786573 GTCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCATCGACCAGCTTTGGTTTTGGCCCCTTTTG
196 ATCAGTTTTGGTACCTTCTCAGCTTCAG---CATCTTTGACCAACTTTGGTTTTGGCACCTTTTG
*** *
22786638 CTCAATGGTTTCCTCC-T--GTACCTCTTCAGGTTTCTTCTTTTC-G---GC-T-AGTTTTGGTA
258 CTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTA
* * * * *
22786694 CCTTCTCATCTTCTGCTTCAACTTCAGCCTCCTTTTCAACCAACTTTTGTTTTGGCGCCTTTTGC
323 ACTTCTCA------GCTTCAGCTTCAGCCTCCTTTTCGACCAACTTTGGTTTTGGCACCTTTTGC
* * *
22786759 TCAACACTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAACGTCTGTTTTGGTAC
382 TCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTAC
* *
22786824 TTTCTCAGCTTCAGCTTCT
447 CTTCTCAGCTTCAGCTTCG
** **** *
22786843 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACGTTTTCCTCCACCTGTACCTCTTCAGGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
* * ** * * *
22786908 CTTTTCAGCAAACTTCAGTTTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGGACCAGCT
66 CTTTTCAGCCAACATCAGTTTTGGT-ACCT-TC----TCAGCTTCAGCCTCCTTTTCGACCAACT
** * ** * * *
22786973 TTGGTTTTTGCACCTTTTGCTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTTTTCTTTTTA
125 TTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCA
*
22787038 GCCAACATCAGTTTTGGTACTTTCTCAGCTT---CATCTTCT-ACCAACTTTGGTTTTGGCACCT
190 GCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCATCTT-TGACCAACTTTGGTTTTGGCACCT
*** * ** * * *
22787099 TTTGCTCAATGTTTTCCTCCATCTGTACCTCTTCATGTTTCTTCCTTTCAGCCAATTTCAGTTTT
254 TTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTT
* * ***
22787164 GGTACCTTCTCATCTTCAGCTGTGACTTCAGCCTCCTTTTCGACCAACTTCT-GTTTTATTACCT
319 GGTAACTTCTCAGCTTCA-----G-CTTCAGCCTCCTTTTCGACCAACTT-TGGTTTTGGCACCT
* *
22787228 TTTGCTCAACGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTT
377 TTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTT
* *
22787293 GGTACCTTCTTAGCTTCATCTTCG
442 GGTACCTTCTCAGCTTCAGCTTCG
* * *
22787317 ACCAACTTTTGTTTTGGCACATTTTGCTCAACACTTTCCTCCTTGGGCACCTCTTCAAGTTTCTT
1 ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
* * * *
22787382 CTTTTCGGCCAAAATCAGTTTTGGTACCTTCTCAGCTTCAGCTTCAGCCTCCTTTACGACTAACT
66 CTTTTCAGCCAACATCAGTTTTGGTACC-T-T---C-TCAGCTTCAGCCTCCTTTTCGACCAACT
* *
22787447 TTGGTTTTGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACATCTTCAGGTTTCTTCTTTTCA
125 TTGGTTTGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCA
** * * * *
22787512 GCCAATGTCAGTTTTGTTACCTTCTCAGCTTCAGTC-TCCTTTTGAACCATCCTTGGTTCTGGCA
190 GCCAACATCAGTTTTGGTACCTTCTCAGCTTCAG-CAT-C-TTTG-ACCAACTTTGGTTTTGGCA
* * *
22787576 CCATTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCAAACTTCAGT
251 CCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGT
* * * * * *
22787641 TTTGGTAAATTCTCAGGTTCAGCTTCATCCTCCTTTTGGACCAGCTTTGGTTTTTGCACCTTTTG
316 TTTGGTAACTTCTCAGCTTCAGCTTCAGCCTCCTTTTCGACCAACTTTGGTTTTGGCACCTTTTG
* **
22787706 CTTAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTCAGTA
381 CTCAACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTA
* *
22787771 CCTTCTCAGCTTCAGTCTCCTT
446 CCTTCTCAGCTTCAG-CTTC-G
** ** * **
22787793 TTCAACTGGCATTGGTTTTGGCACCACTTGCTCAACACTTTTCTCCTTGGGTACCTCTTCGGGTT
1 ACCAACT----TTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTT
* * * *
22787858 TCTTCTCTTCAGCCAACTTCAGTTTTGATGCCTT-TGCAGCTTCAGC
62 TCTTCTTTTCAGCCAACATCAGTTTTGGTACCTTCT-CAGCTTCAGC
22787904 TTCAGCTGCA
Statistics
Matches: 1269, Mismatches: 185, Indels: 117
0.81 0.12 0.07
Matches are distributed among these distances:
447 153 0.12
448 3 0.00
449 1 0.00
450 57 0.04
451 1 0.00
452 1 0.00
453 27 0.02
455 1 0.00
456 38 0.03
458 1 0.00
459 9 0.01
463 1 0.00
464 3 0.00
465 211 0.17
466 3 0.00
467 2 0.00
468 28 0.02
469 1 0.00
471 110 0.09
473 4 0.00
474 437 0.34
475 5 0.00
476 5 0.00
477 2 0.00
478 4 0.00
479 3 0.00
480 158 0.12
ACGTcount: A:0.15, C:0.28, G:0.15, T:0.42
Consensus pattern (465 bp):
ACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTTTCCTCCTTGGGTACCTCTTCAAGTTTCTT
CTTTTCAGCCAACATCAGTTTTGGTACCTTCTCAGCTTCAGCCTCCTTTTCGACCAACTTTGGTT
TGGGCACCTTTTGCTCAATGCTTTCCTCCTTGGTTACCTCTTCAGGTTTCTTCTTTTCAGCCAAC
ATCAGTTTTGGTACCTTCTCAGCTTCAGCATCTTTGACCAACTTTGGTTTTGGCACCTTTTGCTC
AACACTTTCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTAACT
TCTCAGCTTCAGCTTCAGCCTCCTTTTCGACCAACTTTGGTTTTGGCACCTTTTGCTCAACACTT
TCCTCCTTGGGTACCTCTTCAGGTTTCTTCTTTTCAGCCAACTTCAGTTTTGGTACCTTCTCAGC
TTCAGCTTCG
Found at i:22789374 original size:30 final size:30
Alignment explanation
Indices: 22789340--22789414 Score: 80
Period size: 30 Copynumber: 2.5 Consensus size: 30
22789330 CTCTTATGTG
*
22789340 ATTAAATTTTACTACAAAGCTTTGAATTTT-
1 ATTAAATTTTACCACAAA-CTTTGAATTTTA
* * * * *
22789370 ATTAAACTCTGCCACCAACTTTGATTTTTA
1 ATTAAATTTTACCACAAACTTTGAATTTTA
22789400 ATTAAATTTTACCAC
1 ATTAAATTTTACCAC
22789415 TCAATATTAA
Statistics
Matches: 35, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 10 0.29
30 25 0.71
ACGTcount: A:0.35, C:0.17, G:0.05, T:0.43
Consensus pattern (30 bp):
ATTAAATTTTACCACAAACTTTGAATTTTA
Found at i:22794457 original size:30 final size:29
Alignment explanation
Indices: 22794391--22794457 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
22794381 TTTGTCTAAG
* *
22794391 TTGAACTTGACAATTTTTTCCATTGGAGC
1 TTGAACTTAACAATTTTCTCCATTGGAGC
* * *
22794420 TTAAACTTAACAATTTTCTCATATTGGGGC
1 TTGAACTTAACAATTTTCTC-CATTGGAGC
22794450 TTGAACTT
1 TTGAACTT
22794458 TTTTTAAATC
Statistics
Matches: 31, Mismatches: 6, Indels: 1
0.82 0.16 0.03
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.27, C:0.16, G:0.15, T:0.42
Consensus pattern (29 bp):
TTGAACTTAACAATTTTCTCCATTGGAGC
Found at i:22801947 original size:44 final size:44
Alignment explanation
Indices: 22801888--22801975 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
22801878 TATTTTCAGG
* *
22801888 TAACAATTTATTTAAGCATATTAAATTACAGTCCAAAATATTGA
1 TAACAATATAATTAAGCATATTAAATTACAGTCCAAAATATTGA
*
22801932 TAACAATATAATTAAGCATATTAAATTATAGTCCAAAATATTGA
1 TAACAATATAATTAAGCATATTAAATTACAGTCCAAAATATTGA
22801976 ATCATCCTCA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.48, C:0.10, G:0.07, T:0.35
Consensus pattern (44 bp):
TAACAATATAATTAAGCATATTAAATTACAGTCCAAAATATTGA
Found at i:22802544 original size:22 final size:24
Alignment explanation
Indices: 22802501--22802545 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 24
22802491 TATTTTTTTA
*
22802501 ATTTTTATAATTTTATAAAAAATC
1 ATTTTTATAACTTTATAAAAAATC
22802525 ATTTTTA-AACTTT-TAAAAAAT
1 ATTTTTATAACTTTATAAAAAAT
22802546 TATATTATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 8 0.40
23 5 0.25
24 7 0.35
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (24 bp):
ATTTTTATAACTTTATAAAAAATC
Found at i:22803110 original size:16 final size:16
Alignment explanation
Indices: 22803089--22803126 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
22803079 TTTGGTTCAC
* *
22803089 TGTAATTGAATATGGT
1 TGTAATTGAATAGGGA
22803105 TGTAATTGAATAGGGA
1 TGTAATTGAATAGGGA
22803121 TGTAAT
1 TGTAAT
22803127 CAATAATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.26, T:0.39
Consensus pattern (16 bp):
TGTAATTGAATAGGGA
Found at i:22804567 original size:15 final size:16
Alignment explanation
Indices: 22804547--22804583 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
22804537 ACAAAATCAA
22804547 ATAAAA-TTACATAAT
1 ATAAAAGTTACATAAT
*
22804562 ATAAAAGTTACATTAT
1 ATAAAAGTTACATAAT
22804578 ATAAAA
1 ATAAAA
22804584 ATTAAATGAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.32
Consensus pattern (16 bp):
ATAAAAGTTACATAAT
Found at i:22804764 original size:60 final size:60
Alignment explanation
Indices: 22804700--22804821 Score: 167
Period size: 60 Copynumber: 2.0 Consensus size: 60
22804690 ATACTAAACT
* * * *
22804700 AAACACAACAATTTAGAGCTTAATCCTAAATTACTAATAAATTAAAATT-T-AAATAATTAC
1 AAACACAAAAATTTAGAACATAATCCTAAATTACTAACAAATT--AATTATAAAATAATTAC
*
22804760 AAACACAAAAATTTATAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
1 AAACACAAAAATTTAGAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
22804820 AA
1 AA
22804822 TATTCATACA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
58 4 0.07
59 1 0.02
60 50 0.91
ACGTcount: A:0.55, C:0.13, G:0.02, T:0.30
Consensus pattern (60 bp):
AAACACAAAAATTTAGAACATAATCCTAAATTACTAACAAATTAATTATAAAATAATTAC
Found at i:22804843 original size:23 final size:23
Alignment explanation
Indices: 22804815--22804925 Score: 140
Period size: 23 Copynumber: 4.8 Consensus size: 23
22804805 TTATAAAATA
22804815 ATTACAATATTCATACAAACAAT
1 ATTACAATATTCATACAAACAAT
*
22804838 ATTACAATATCCATAC--A-AA-
1 ATTACAATATTCATACAAACAAT
22804857 ATTACAATATTCATACAAACAAT
1 ATTACAATATTCATACAAACAAT
*
22804880 ATTACAATATTCATACAAAATTACAAA
1 ATTACAATATTCATAC--AA--ACAAT
22804907 ATTACAATATTCATACAAA
1 ATTACAATATTCATACAAA
22804926 ATACTAATCC
Statistics
Matches: 77, Mismatches: 3, Indels: 16
0.80 0.03 0.17
Matches are distributed among these distances:
19 15 0.19
20 2 0.03
21 2 0.03
22 2 0.03
23 32 0.42
25 4 0.05
27 20 0.26
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.30
Consensus pattern (23 bp):
ATTACAATATTCATACAAACAAT
Found at i:22804871 original size:42 final size:42
Alignment explanation
Indices: 22804814--22804905 Score: 175
Period size: 42 Copynumber: 2.2 Consensus size: 42
22804804 ATTATAAAAT
22804814 AATTACAATATTCATACAAACAATATTACAATATCCATACAA
1 AATTACAATATTCATACAAACAATATTACAATATCCATACAA
*
22804856 AATTACAATATTCATACAAACAATATTACAATATTCATACAA
1 AATTACAATATTCATACAAACAATATTACAATATCCATACAA
22804898 AATTACAA
1 AATTACAA
22804906 AATTACAATA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 49 1.00
ACGTcount: A:0.53, C:0.17, G:0.00, T:0.29
Consensus pattern (42 bp):
AATTACAATATTCATACAAACAATATTACAATATCCATACAA
Found at i:22804913 original size:27 final size:27
Alignment explanation
Indices: 22804851--22805114 Score: 119
Period size: 27 Copynumber: 10.0 Consensus size: 27
22804841 ACAATATCCA
22804851 TACAAAATTACAATATTCATAC--AA-
1 TACAAAATTACAATATTCATACAAAAT
*
22804875 -ACAATATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
22804901 TACAAAATTACAATATTCATACAAAA-
1 TACAAAATTACAATATTCATACAAAAT
* * * **
22804927 TAC-TAATCCAAAACTATAAATACAAAAT
1 TACAAAAT-TACAA-TATTCATACAAAAT
** * * *
22804955 TA-ATTA-TAAAATAAT--TACAATATT
1 TACAAAATTACAATATTCATACAA-AAT
* *
22804979 CATACAACATTATAATATTCATACAAAA-
1 --TACAAAATTACAATATTCATACAAAAT
* * * **
22805007 TAC-TAATCAAAAACTATAAATACAAAAT
1 TACAAAAT-TACAA-TATTCATACAAAAT
** * * *
22805035 TA-ATTA-TAAAATAAT--TACAATATT
1 TACAAAATTACAATATTCATACAA-AAT
22805059 CATACAAAATTACAATATTCATACAAAAT
1 --TACAAAATTACAATATTCATACAAAAT
22805088 TACAAAATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
22805115 ACTAATCAAA
Statistics
Matches: 181, Mismatches: 33, Indels: 49
0.69 0.13 0.19
Matches are distributed among these distances:
23 30 0.17
24 4 0.02
25 11 0.06
26 24 0.13
27 77 0.43
28 22 0.12
29 3 0.02
30 10 0.06
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (27 bp):
TACAAAATTACAATATTCATACAAAAT
Found at i:22804951 original size:107 final size:102
Alignment explanation
Indices: 22804838--22805316 Score: 580
Period size: 107 Copynumber: 4.6 Consensus size: 102
22804828 TACAAACAAT
*
22804838 ATTACAATATCCATACAAAATTACAATATTCATACAAACAATATTACAATATTCATACAAAATTA
1 ATTACAATATTCATACAAAATTACAATATTCATACAAACAA-ATTACAATATTCATACAAAA-TA
* * * ** *
22804903 CAAAAT-TACAA-TATTCATACAAAATACTAATCCA-AAACTATA
64 C-TAATCAAAAACTATAAATACAAAAT--TAAT-TATAAA--ATA
* * *
22804945 AATACAAAATTAATT-ATAAAATAATTACAATATTCATAC-AAC--ATTATAATATTCATACAAA
1 ATTAC--AA-T-ATTCATACAA-AATTACAATATTCATACAAACAAATTACAATATTCATACAAA
22805006 ATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATA
61 ATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATA
22805048 ATTACAATATTCATACAAAATTACAATATTCATACAAAATTACAAAATTACAATATTCATACAAA
1 ATTACAATATTCATACAAAATTACAATATTCATAC--AA--AC-AAATTACAATATTCATACAAA
22805113 ATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATA
61 ATACTAATCAAAAACTATAAATACAAAATTAATTATAAAATA
* *
22805155 ATTACAATATTCATAAAAAATTACAATATTCATACAAA-AAATTACACTATTCATACAAAATACT
1 ATTACAATATTCATACAAAATTACAATATTCATACAAACAAATTACAATATTCATACAAAATACT
*
22805219 AATCCAAAACTATAAATACAAAATTAATTATAAAATA
66 AATCAAAAACTATAAATACAAAATTAATTATAAAATA
* * * *
22805256 ATTATAATATTCATACAAAATTATAATATTCATACAAA-AAGTTACAATATACATACAAAAT
1 ATTACAATATTCATACAAAATTACAATATTCATACAAACAAATTACAATATTCATACAAAAT
22805317 TACCCATTGG
Statistics
Matches: 333, Mismatches: 22, Indels: 40
0.84 0.06 0.10
Matches are distributed among these distances:
99 20 0.06
100 6 0.02
101 118 0.35
102 1 0.00
103 8 0.02
104 3 0.01
105 12 0.04
106 6 0.02
107 129 0.39
109 2 0.01
110 9 0.03
111 19 0.06
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (102 bp):
ATTACAATATTCATACAAAATTACAATATTCATACAAACAAATTACAATATTCATACAAAATACT
AATCAAAAACTATAAATACAAAATTAATTATAAAATA
Found at i:22804996 original size:80 final size:80
Alignment explanation
Indices: 22804901--22805087 Score: 347
Period size: 80 Copynumber: 2.3 Consensus size: 80
22804891 CATACAAAAT
*
22804901 TACAAAATTACAATATTCATACAAAATACTAATCCAAAACTATAAATACAAAATTAATTATAAAA
1 TACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAA
22804966 TAATTACAATATTCA
66 TAATTACAATATTCA
* *
22804981 TACAACATTATAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAA
1 TACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAA
22805046 TAATTACAATATTCA
66 TAATTACAATATTCA
22805061 TACAAAATTACAATATTCATACAAAAT
1 TACAAAATTACAATATTCATACAAAAT
22805088 TACAAAATTA
Statistics
Matches: 102, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
80 102 1.00
ACGTcount: A:0.56, C:0.13, G:0.00, T:0.30
Consensus pattern (80 bp):
TACAAAATTACAATATTCATACAAAATACTAATCAAAAACTATAAATACAAAATTAATTATAAAA
TAATTACAATATTCA
Found at i:22805138 original size:46 final size:45
Alignment explanation
Indices: 22805047--22805143 Score: 110
Period size: 46 Copynumber: 2.1 Consensus size: 45
22805037 ATTATAAAAT
* *
22805047 AATTACAATATTCATACAAAATTACAATATTCATACAAAATTACAA
1 AATTACAATATTCATACAAAATTACAATA-TAAAACAAAATTACAA
22805093 AATTACAATATTCATACAAAA-TACTAATCA-AAAACTATAAA-TACAA
1 AATTACAATATTCATACAAAATTAC-AAT-ATAAAAC-A-AAATTACAA
22805139 AATTA
1 AATTA
22805144 ATTATAAAAT
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
45 6 0.13
46 35 0.78
47 4 0.09
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (45 bp):
AATTACAATATTCATACAAAATTACAATATAAAACAAAATTACAA
Found at i:22805310 original size:21 final size:20
Alignment explanation
Indices: 22804814--22805319 Score: 151
Period size: 19 Copynumber: 24.3 Consensus size: 20
22804804 ATTATAAAAT
22804814 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC-AA-A
*
22804836 ATATTACAATATCCATAC-AA
1 A-ATTACAATATTCATACAAA
22804856 AATTACAATATTCATACAAACA
1 AATTACAATATTCATAC-AA-A
22804878 ATATTACAATATTCATACAAAATTACAA
1 A-ATTACAATATTCATAC------A-AA
22804906 AATTACAATATTCATAC-AA
1 AATTACAATATTCATACAAA
* * * *
22804925 AA-TACTA-ATCCAAAACTATA
1 AATTACAATATTC-ATAC-AAA
* * *
22804945 AA-TACAAAATTAATTATAAAA
1 AATTACAATATTCA-TA-CAAA
22804966 TAATTACAATATTCATAC-AA
1 -AATTACAATATTCATACAAA
* *
22804986 CATTATAATATTCATAC-AA
1 AATTACAATATTCATACAAA
* *
22805005 AA-TAC--TAATCA-AAAACTA
1 AATTACAATATTCATACAA--A
* * * *
22805023 TAAATACAAAATTAATTATAAAA
1 -AATTACAATATTCA-TA-CAAA
22805046 TAATTACAATATTCATAC-AA
1 -AATTACAATATTCATACAAA
22805066 AATTACAATATTCATACAAAATTACAA
1 AATTACAATATTCATAC------A-AA
22805093 AATTACAATATTCATAC-AA
1 AATTACAATATTCATACAAA
* *
22805112 AA-TAC--TAATCA-AAAACTA
1 AATTACAATATTCATACAA--A
* * * *
22805130 TAAATACAAAATTAATTATAAAA
1 -AATTACAATATTCA-TA-CAAA
22805153 TAATTACAATATTCATA-AAA
1 -AATTACAATATTCATACAAA
22805173 AATTACAATATTCATACAAAA
1 AATTACAATATTCATAC-AAA
*
22805194 AATTACACTATTCATAC-AA
1 AATTACAATATTCATACAAA
* * * *
22805213 AA-TACTA-ATCCAAAACTATA
1 AATTACAATATTC-ATAC-AAA
* * *
22805233 AA-TACAAAATTAATTATAAAA
1 AATTACAATATTCA-TA-CAAA
*
22805254 TAATTATAATATTCATAC-AA
1 -AATTACAATATTCATACAAA
*
22805274 AATTATAATATTCATACAAA
1 AATTACAATATTCATACAAA
*
22805294 AAGTTACAATATACATAC-AA
1 AA-TTACAATATTCATACAAA
22805314 AATTAC
1 AATTAC
22805320 CCATTGGCGC
Statistics
Matches: 370, Mismatches: 55, Indels: 121
0.68 0.10 0.22
Matches are distributed among these distances:
15 2 0.01
16 12 0.03
17 6 0.02
18 20 0.05
19 103 0.28
20 41 0.11
21 44 0.12
22 21 0.06
23 74 0.20
24 2 0.01
25 6 0.02
27 35 0.09
28 3 0.01
29 1 0.00
ACGTcount: A:0.56, C:0.14, G:0.00, T:0.30
Consensus pattern (20 bp):
AATTACAATATTCATACAAA
Found at i:22805362 original size:27 final size:27
Alignment explanation
Indices: 22805324--22805396 Score: 128
Period size: 27 Copynumber: 2.7 Consensus size: 27
22805314 AATTACCCAT
*
22805324 TGGCGCCTCCCTATAAGGCACTTTTAA
1 TGGCGCCTCCCTATGAGGCACTTTTAA
22805351 TGGCGCCTCCCTATGAGGCACTTTTAA
1 TGGCGCCTCCCTATGAGGCACTTTTAA
*
22805378 TGGTGCCTCCCTATGAGGC
1 TGGCGCCTCCCTATGAGGC
22805397 GCCACCTGAC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.18, C:0.30, G:0.23, T:0.29
Consensus pattern (27 bp):
TGGCGCCTCCCTATGAGGCACTTTTAA
Found at i:22809118 original size:11 final size:11
Alignment explanation
Indices: 22809102--22809130 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
22809092 TTCAAAAATT
22809102 CTCTTAAGTTC
1 CTCTTAAGTTC
22809113 CTCTTAAGTTC
1 CTCTTAAGTTC
22809124 CTCTTAA
1 CTCTTAA
22809131 CTCCCTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.21, C:0.28, G:0.07, T:0.45
Consensus pattern (11 bp):
CTCTTAAGTTC
Found at i:22809968 original size:7 final size:7
Alignment explanation
Indices: 22809956--22809980 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
22809946 AGTCGATTGA
22809956 TATTTAG
1 TATTTAG
22809963 TATTTAG
1 TATTTAG
22809970 TATTTAG
1 TATTTAG
22809977 TATT
1 TATT
22809981 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:22810658 original size:18 final size:18
Alignment explanation
Indices: 22810631--22810666 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
22810621 CAGGTGCGTT
*
22810631 TCCTAGCCCTTATATGTA
1 TCCTAACCCTTATATGTA
22810649 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
22810667 CTCTTTTCCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.25, C:0.28, G:0.08, T:0.39
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:22810950 original size:21 final size:21
Alignment explanation
Indices: 22810926--22810974 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
22810916 AGATGCCGTA
* ** *
22810926 CCGGAAGAACCAGGATCCCCG
1 CCGGAAGAACAACAATCACCG
*
22810947 CCGGAGGAACAACAATCACCG
1 CCGGAAGAACAACAATCACCG
22810968 CCGGAAG
1 CCGGAAG
22810975 CTAGAGAAAG
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.35, G:0.29, T:0.04
Consensus pattern (21 bp):
CCGGAAGAACAACAATCACCG
Found at i:22811127 original size:25 final size:25
Alignment explanation
Indices: 22811099--22811146 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
22811089 TATTTTGATA
22811099 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
22811124 TTATTTGATGTAATAAAATAGAA
1 TTATTTGATGTAATAAAATAGAA
22811147 ATTTTTGATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:22811357 original size:45 final size:45
Alignment explanation
Indices: 22811239--22811695 Score: 387
Period size: 45 Copynumber: 10.0 Consensus size: 45
22811229 AACCCTAAAC
* * * *
22811239 TTAAAAACCTTAACCCCCTTAACTTAAAAAACCTAACCTAA-TTAA
1 TTAAAAACCCTAA-ACCCTAAACTTAAAAACCCTAACCTAATTTAA
*
22811284 CTTAAAAACCCT-AA-CCTAATTAAATTAAAAACCCTAACCTAATTTAA
1 -TTAAAAACCCTAAACCCT-A--AACTTAAAAACCCTAACCTAATTTAA
* * *
22811331 TTAAAAACCTTAAACCCTAAGCTTAAAAACCATAACCTAATTTAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
* * * *
22811376 TTAAAAACCCTAAACCCTAAAATTAAAAACCCTAAACTAACTAAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
* *
22811421 TTAAAAACCATAACCTCCCTAAACTTAAAAACCCTAACCTAATTTAA
1 TTAAAAACCCTAA--ACCCTAAACTTAAAAACCCTAACCTAATTTAA
* *
22811468 TTAAAAACCCTAAACTCTAAACTTAAAAACCCTAACCTAATTAAA
1 TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
* * ** *
22811513 TTAAAAACCCTAACCCCCTTAACTTAAAAACTATAACCTAATTAAA
1 TTAAAAACCCTAA-ACCCTAAACTTAAAAACCCTAACCTAATTTAA
* * * *
22811559 TTAAAAACCCT-AA-CCTAATTTAATTTAAAACCTTAAACCCTAA---AC
1 TTAAAAACCCTAAACCCTAA---ACTTAAAAACCCT-AA-CCTAATTTAA
* ** * *
22811604 TTAAAAACCATATCCCCCTTAACTTAAAAA-CCTAACCTAATTAAA
1 TTAAAAACCCTA-AACCCTAAACTTAAAAACCCTAACCTAATTTAA
* * *
22811649 TTAAAAACCCT-AA-CCTAATTTAATTAAAAACCCTAAACTAAATTAA
1 TTAAAAACCCTAAACCCTAA---ACTTAAAAACCCTAACCTAATTTAA
22811695 T
1 T
22811696 AATTTTACTT
Statistics
Matches: 333, Mismatches: 54, Indels: 48
0.77 0.12 0.11
Matches are distributed among these distances:
42 9 0.03
43 9 0.03
44 2 0.01
45 154 0.46
46 99 0.30
47 48 0.14
48 12 0.04
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.26
Consensus pattern (45 bp):
TTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCTAATTTAA
Found at i:22811388 original size:114 final size:112
Alignment explanation
Indices: 22811189--22811686 Score: 474
Period size: 114 Copynumber: 4.4 Consensus size: 112
22811179 ATTAATACCC
* *
22811189 TTAAATTAAAAATCCTAACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAACCTTAACC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCTTAA--
* * * *
22811254 CCCTTAACTTAAAAAACCTAACCTAATTAACTTAAAAACCCTAACCTAA
64 ACCTAAAATTAAAAACCCTAACCTAATTAACTTAAAAACCCTAACCTAA
* * *
22811303 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCTTAAACCCTAAGCTTAAAAACCAT-AAC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCTTAAAC
*
22811367 CTAATTTAATTAAAAACCCTAAACCCTAA--AA-TTAAAAACCCTAAACTAA
66 CTAA---AATTAAAAACCCT-AA-CCTAATTAACTTAAAAACCCTAACCTAA
* * *** * * *
22811416 CTAAATTAAAAACCATAACCTCCCTAAACTTAAAAACCCT-AA-CCTAATTTAATTAAAAACCCT
1 TTAAATTAAAAACCCTAACCTAATTTAA-TTAAAAACCCTAAACCCTAA---ACTTAAAAACCTT
* * ***
22811479 AAACTCTAAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCCCC
62 AAAC-CTAAAATTAAAAACCCTAACCTAATTAACTTAAAAACCCTAACCTAA
* ** * * *
22811531 TTAACTTAAAAACTATAACCTAATTAAATTAAAAACCCT-AA-CCTAATTTAATTTAAAACCTTA
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAA---ACTTAAAAACCTTA
* * * ***
22811594 AACCCTAAACTTAAAAACCATATCCCCCTTAACTTAAAAA-CCTAACCTAA
63 AA-CCTAAAATTAAAAACCCTAACCTAATTAACTTAAAAACCCTAACCTAA
22811644 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAAC
1 TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAAC
22811687 TAAATTAATA
Statistics
Matches: 323, Mismatches: 44, Indels: 33
0.81 0.11 0.08
Matches are distributed among these distances:
111 4 0.01
112 10 0.03
113 86 0.27
114 162 0.50
115 49 0.15
116 8 0.02
117 4 0.01
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (112 bp):
TTAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCTTAAAC
CTAAAATTAAAAACCCTAACCTAATTAACTTAAAAACCCTAACCTAA
Found at i:22811652 original size:251 final size:250
Alignment explanation
Indices: 22811190--22811680 Score: 702
Period size: 251 Copynumber: 2.0 Consensus size: 250
22811180 TTAATACCCT
* * *
22811190 TAAATTAAAAATCCTAACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAACCTTAACCC
1 TAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCC
** * * *
22811255 CCTTAACTTAAAAAACCTAACCTAATTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTA
66 AATTAAATTAAAAAACCTAACCCAATTAACTTAAAAACCATAACCTAATTAAATTAAAAACCCTA
* *
22811320 ACCTAATTTAATTAAAAACCTTAAACCCTAAGCTTAAAAACCATAACCTAATTTAATTAAAAACC
131 ACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAACCATAACCTAACTTAATTAAAAACC
22811385 CTAAACCCTAAAATTAAAAACCCTAAACTAACTAAATTAAAAACCATAACCTCCC
196 CTAAACCCTAAAATTAAAAACCCTAAACTAACTAAATTAAAAACCATAACCTCCC
*
22811440 TAAACTTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACTCTAAACTTAAAAACCCTAACC
1 TAAA-TTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACC
* * ** *
22811505 TAATTAAATTAAAAACCCTAACCCCCTTAACTTAAAAACTATAACCTAATTAAATTAAAAACCCT
65 CAATTAAATTAAAAAACCTAACCCAATTAACTTAAAAACCATAACCTAATTAAATTAAAAACCCT
* * **
22811570 AACCTAATTTAATTTAAAACCTTAAACCCTAAACTTAAAAACCATATCC-CCCTTAACTTAAAAA
130 AACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAACCATAACCTAACTTAA-TTAAAAA
* * *
22811634 -CCT-AA-CCTAATTAAATTAAAAACCCTAACCTAATTTAATTAAAAACC
194 CCCTAAACCCT-A--AAATTAAAAACCCTAAACTAACTAAATTAAAAACC
22811681 CTAAACTAAA
Statistics
Matches: 213, Mismatches: 23, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
248 3 0.01
249 3 0.01
250 11 0.05
251 196 0.92
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (250 bp):
TAAATTAAAAACCCTAACCTAATTTAATTAAAAACCCTAAACCCTAAACTTAAAAACCCTAACCC
AATTAAATTAAAAAACCTAACCCAATTAACTTAAAAACCATAACCTAATTAAATTAAAAACCCTA
ACCTAATTTAATTAAAAACCTTAAACCCTAAACTTAAAAACCATAACCTAACTTAATTAAAAACC
CTAAACCCTAAAATTAAAAACCCTAAACTAACTAAATTAAAAACCATAACCTCCC
Found at i:22811663 original size:28 final size:23
Alignment explanation
Indices: 22811192--22811695 Score: 373
Period size: 23 Copynumber: 22.1 Consensus size: 23
22811182 AATACCCTTA
*
22811192 AATTAAAAATCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
22811215 AATTAAAAACCTTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * ***
22811237 ACTTAAAAACCTTAACC-CCCTT
1 AATTAAAAACCCTAACCTAATTT
*
22811259 AACTTAAAAAACCTAACCTAA-TT
1 AA-TTAAAAACCCTAACCTAATTT
*
22811282 AACTTAAAAACCCTAACCTAATTA
1 AA-TTAAAAACCCTAACCTAATTT
22811306 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
*
22811329 AATTAAAAACCTTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
** *
22811351 GCTTAAAAACCATAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
22811374 AATTAAAAACCCTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * *
22811396 AATTAAAAACCCTAAACTAACTA
1 AATTAAAAACCCTAACCTAATTT
* *** *
22811419 AATTAAAAACCATAACCTCCCTA
1 AATTAAAAACCCTAACCTAATTT
22811442 AACTTAAAAACCCTAACCTAATTT
1 AA-TTAAAAACCCTAACCTAATTT
22811466 AATTAAAAACCCTAAACTCTAA---
1 AATTAAAAACCCT-AAC-CTAATTT
* *
22811488 ACTTAAAAACCCTAACCTAATTA
1 AATTAAAAACCCTAACCTAATTT
***
22811511 AATTAAAAACCCTAACC-CCCTT
1 AATTAAAAACCCTAACCTAATTT
** *
22811533 AACTTAAAAACTATAACCTAATTA
1 AA-TTAAAAACCCTAACCTAATTT
22811557 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
* *
22811580 AATTTAAAACCTTAAACCCTAA---
1 AATTAAAAACCCT-AA-CCTAATTT
* * * ***
22811602 ACTTAAAAACCATATCC-CCCTT
1 AATTAAAAACCCTAACCTAATTT
*
22811624 AACTTAAAAA-CCTAACCTAATTA
1 AA-TTAAAAACCCTAACCTAATTT
22811647 AATTAAAAACCCTAACCTAATTT
1 AATTAAAAACCCTAACCTAATTT
* *
22811670 AATTAAAAACCCTAAACTAAATT
1 AATTAAAAACCCTAACCTAATTT
22811693 AAT
1 AAT
22811696 AATTTTACTT
Statistics
Matches: 384, Mismatches: 63, Indels: 68
0.75 0.12 0.13
Matches are distributed among these distances:
20 17 0.04
21 10 0.03
22 74 0.19
23 224 0.58
24 35 0.09
25 24 0.06
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (23 bp):
AATTAAAAACCCTAACCTAATTT
Found at i:22811815 original size:117 final size:116
Alignment explanation
Indices: 22811689--22811937 Score: 421
Period size: 115 Copynumber: 2.1 Consensus size: 116
22811679 CCCTAAACTA
* **
22811689 AATTAATAATTTTACTTTCACATAATGTTAGATTT-AGAAAAATGTTTTTTTTTTGGTACTAACA
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGA-AAAAATG--TTTTGATTGGTACTAACA
*
22811753 ATTAATAATTTTATATAATTTGATAA-TTTTACTAATCATTAATACAATTTATC
63 ATTAATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
22811806 AATTAATAATTTTACATTCACATAATGTTAGATTTGAAAAAATGTTTTGATTGGTACTAACAATT
1 AATTAATAATTTTACATTCACATAATGTTAGATTTGAAAAAATGTTTTGATTGGTACTAACAATT
22811871 AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
66 AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
22811922 AATTAATAATTTTACA
1 AATTAATAATTTTACA
22811938 AACTTAATTT
Statistics
Matches: 126, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
115 42 0.33
116 42 0.33
117 41 0.33
118 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (116 bp):
AATTAATAATTTTACATTCACATAATGTTAGATTTGAAAAAATGTTTTGATTGGTACTAACAATT
AATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
Done.