Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 59 of 199
Found at i:22811934 original size:116 final size:116
Alignment explanation
Indices: 22811689--22811937 Score: 421
Period size: 116 Copynumber: 2.1 Consensus size: 116
22811679 CCCTAAACTA
* **
22811689 AATTAATAATTTTACTTTCACATAATGTTAGATTTAGAAAAATGTTTTTTTTTTGGTACTAACAA
1 AATTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATG-TTTTTGATTGGTACTAACAA
*
22811754 TTAATAATTTTATATAATTTGATAATTTTACTAATCATTAATACAATTTATC
65 TTAATAATTTTATATAATTTGATAATTTTACTAACCATTAATACAATTTATC
22811806 AATTAATAATTTTACATTCACATAATGTTAGATTT-GAAAAAATG-TTTTGATTGGTACTAACAA
1 AATTAATAATTTTACATTCACATAATGTTAGATTTAG-AAAAATGTTTTTGATTGGTACTAACAA
22811869 TTAATAATTTTATATAATTTGATAATTTTTACTAACCATTAATACAATTTATC
65 TTAATAATTTTATATAATTTGATAA-TTTTACTAACCATTAATACAATTTATC
22811922 AATTAATAATTTTACA
1 AATTAATAATTTTACA
22811938 AACTTAATTT
Statistics
Matches: 126, Mismatches: 4, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
115 42 0.33
116 43 0.34
117 41 0.33
ACGTcount: A:0.40, C:0.08, G:0.06, T:0.46
Consensus pattern (116 bp):
AATTAATAATTTTACATTCACATAATGTTAGATTTAGAAAAATGTTTTTGATTGGTACTAACAAT
TAATAATTTTATATAATTTGATAATTTTACTAACCATTAATACAATTTATC
Found at i:22815108 original size:125 final size:125
Alignment explanation
Indices: 22814948--22815296 Score: 551
Period size: 124 Copynumber: 2.8 Consensus size: 125
22814938 CAAACATGCT
* * * *
22814948 ACTGTAGCAAAAGCGCGTTCATGAGGGCGCGATTTTCACAAATTCTTCTCAAATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCATGCT
*
22815013 AGAAGCGATTTTATACTATTTGCTTAGAAACAT-AAAAAAAATTTATTTCTTCCATGACCG
66 AGAAGCGATTTTATACTATTTGCTCAGAAACATCAAAAAAAA-TTATTTCTTCCATGACCG
* * *
22815073 ACTGTACCAAAAGCGCGTCCACGAGGGCATGATTTT-ACAAATTCTTCTCAAATAGCATCATACT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCATGCT
* * *
22815137 AGAAGCGATTTTATACTATTTACTCAGAAACGTCAAAAAAAATTATTTCTTCCATGACCT
66 AGAAGCGATTTTATACTATTTGCTCAGAAACATCAAAAAAAATTATTTCTTCCATGACCG
22815197 ACTGTAGCAAAAGCGCGTCCACGAGGGCACGA-TTTCACAAATTCTTCTCAAATAGCATCATGCT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCATGCT
* *
22815261 AGAAGCGATTTTATACTATTTGATCAGAAACGTCAA
66 AGAAGCGATTTTATACTATTTGCTCAGAAACATCAA
22815297 CTCGAAATTA
Statistics
Matches: 206, Mismatches: 16, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
123 3 0.01
124 164 0.80
125 39 0.19
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.29
Consensus pattern (125 bp):
ACTGTAGCAAAAGCGCGTCCACGAGGGCACGATTTTCACAAATTCTTCTCAAATAGCATCATGCT
AGAAGCGATTTTATACTATTTGCTCAGAAACATCAAAAAAAATTATTTCTTCCATGACCG
Found at i:22816394 original size:19 final size:19
Alignment explanation
Indices: 22816366--22816405 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
22816356 AACTTAGTTG
*
22816366 GTTATTGTTTATCTATTAA
1 GTTATGGTTTATCTATTAA
*
22816385 GTTATGGTTTATTTATTAA
1 GTTATGGTTTATCTATTAA
22816404 GT
1 GT
22816406 AAAATTTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.25, C:0.03, G:0.15, T:0.57
Consensus pattern (19 bp):
GTTATGGTTTATCTATTAA
Found at i:22816481 original size:11 final size:11
Alignment explanation
Indices: 22816465--22816514 Score: 50
Period size: 11 Copynumber: 4.5 Consensus size: 11
22816455 TTTATTTAAA
22816465 ATTATAATAAT
1 ATTATAATAAT
*
22816476 ATTATAACAA-
1 ATTATAATAAT
*
22816486 ATTATTATAAT
1 ATTATAATAAT
22816497 ACTTAT-ATAAT
1 A-TTATAATAAT
22816508 ACTTATA
1 A-TTATA
22816515 CTTTTTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
10 8 0.24
11 21 0.64
12 4 0.12
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (11 bp):
ATTATAATAAT
Found at i:22816487 original size:21 final size:22
Alignment explanation
Indices: 22816463--22816503 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
22816453 ATTTTATTTA
22816463 AAATTATAATAATA-TTATAAC
1 AAATTATAATAATACTTATAAC
*
22816484 AAATTATTATAATACTTATA
1 AAATTATAATAATACTTATA
22816504 TAATACTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
AAATTATAATAATACTTATAAC
Found at i:22816688 original size:29 final size:29
Alignment explanation
Indices: 22816656--22816716 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
22816646 TTATTTATTT
* *
22816656 AATTTATTTTTATTTTTTAAAAT-TTTTAA
1 AATTTATATTT-TTTGTTAAAATATTTTAA
* *
22816685 AATTTCTATTTTTTGTTAAATTATTTTAA
1 AATTTATATTTTTTGTTAAAATATTTTAA
22816714 AAT
1 AAT
22816717 AGATGAAAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 9 0.33
29 18 0.67
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.62
Consensus pattern (29 bp):
AATTTATATTTTTTGTTAAAATATTTTAA
Found at i:22821746 original size:5 final size:5
Alignment explanation
Indices: 22821736--22821783 Score: 87
Period size: 5 Copynumber: 9.6 Consensus size: 5
22821726 ATATCCTTTC
*
22821736 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT TATAT AAT
1 AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AATAT AAT
22821784 TGAATTCTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (5 bp):
AATAT
Found at i:22822501 original size:25 final size:26
Alignment explanation
Indices: 22822448--22822502 Score: 62
Period size: 25 Copynumber: 2.2 Consensus size: 26
22822438 AGTGTTTTTT
22822448 ATTTT-CTTCTGTCTATTCTCTACTC
1 ATTTTACTTCTGTCTATTCTCTACTC
* * *
22822473 -TTTTACTTCTTTCTATTGT-TAGTC
1 ATTTTACTTCTGTCTATTCTCTACTC
22822497 ATTTTA
1 ATTTTA
22822503 AAGAATTTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
24 8 0.32
25 17 0.68
ACGTcount: A:0.15, C:0.20, G:0.05, T:0.60
Consensus pattern (26 bp):
ATTTTACTTCTGTCTATTCTCTACTC
Found at i:22826807 original size:17 final size:16
Alignment explanation
Indices: 22826777--22826812 Score: 54
Period size: 17 Copynumber: 2.2 Consensus size: 16
22826767 CTTGGACAGT
22826777 AGAAGAAAAGAGAAAA
1 AGAAGAAAAGAGAAAA
*
22826793 AGAAGAAATAGAGAAGA
1 AGAAGAAA-AGAGAAAA
22826810 AGA
1 AGA
22826813 GGAGGAGGAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.69, C:0.00, G:0.28, T:0.03
Consensus pattern (16 bp):
AGAAGAAAAGAGAAAA
Found at i:22827683 original size:30 final size:32
Alignment explanation
Indices: 22827613--22827685 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 32
22827603 AAAATGTTAA
22827613 TTGAGTGACTGATTTGTCACTTTTCAATAACG
1 TTGAGTGACTGATTTGTCACTTTTCAATAACG
* * *
22827645 TT-AGTGACTGTTTTGTTATTTTTTC-A-AA-G
1 TTGAGTGACTGATTTGTCA-CTTTTCAATAACG
22827674 TTGAGTGACTGA
1 TTGAGTGACTGA
22827686 AATGAAACCT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
29 3 0.09
30 10 0.29
31 15 0.43
32 7 0.20
ACGTcount: A:0.23, C:0.11, G:0.21, T:0.45
Consensus pattern (32 bp):
TTGAGTGACTGATTTGTCACTTTTCAATAACG
Found at i:22835811 original size:101 final size:101
Alignment explanation
Indices: 22835696--22835981 Score: 493
Period size: 101 Copynumber: 2.8 Consensus size: 101
22835686 AAAGTGATGG
22835696 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
22835761 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
*
22835797 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGTATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
22835862 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * * *
22835898 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGAT-GGTCACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGT
*
22835962 ACTATGTGCATGCTACTATG
64 ACTATGTGCAGGCTACTATG
22835982 TGAATCCGCA
Statistics
Matches: 176, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
101 139 0.79
102 33 0.19
103 4 0.02
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCGCATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:22835816 original size:51 final size:50
Alignment explanation
Indices: 22835696--22835979 Score: 292
Period size: 51 Copynumber: 5.6 Consensus size: 50
22835686 AAAGTGATGG
* * * * *
22835696 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-ATGATAGG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATA-GTTCGA
* * * *
22835746 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTCGA
* *
22835797 TCACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGAATGATAGGTCG-
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACC-G---GATAGTTCGA
* *
22835850 T-A--TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAG-TTCGA
* *
22835898 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATAGTGAT-GG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGT--TCGA
* *
22835949 TCACATGTGTAGTACTATGTGCATGCTACTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTA
22835980 TGTGAATCCG
Statistics
Matches: 196, Mismatches: 25, Indels: 25
0.80 0.10 0.10
Matches are distributed among these distances:
46 5 0.03
47 3 0.02
48 1 0.01
49 2 0.01
50 69 0.35
51 104 0.53
52 3 0.02
53 1 0.01
54 3 0.02
55 5 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (50 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATAGTTCGA
Found at i:22835983 original size:26 final size:26
Alignment explanation
Indices: 22835903--22835983 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
22835893 TTCGATCACG
*
22835903 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
* * *
22835929 CGTGTA-T-CGGATAGTG-ATGGTCAC-A
1 TGTGTAGTAC-TAT-GTGCATGCT-ACTA
22835954 TGTGTAGTACTATGTGCATGCTACTA
1 TGTGTAGTACTATGTGCATGCTACTA
22835980 TGTG
1 TGTG
22835984 AATCCGCATC
Statistics
Matches: 41, Mismatches: 7, Indels: 14
0.66 0.11 0.23
Matches are distributed among these distances:
24 1 0.02
25 17 0.41
26 22 0.54
27 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.28, T:0.35
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCATGCTACTA
Found at i:22836110 original size:41 final size:44
Alignment explanation
Indices: 22836003--22836117 Score: 132
Period size: 41 Copynumber: 2.7 Consensus size: 44
22835993 CATTGAATAT
* *
22836003 AAAGATGGTTGCTAAGTGTTGATTCCACCGTATCCTTGACTGTG
1 AAAGGTGGTTGCTAAGTGTTGATTCCACCGTATCATTGACTGTG
** *
22836047 AAAGG-GGTTGCTATCTGCTGATTCC-CCGTATCATTGA-T-T-
1 AAAGGTGGTTGCTAAGTGTTGATTCCACCGTATCATTGACTGTG
*
22836086 ATATGGTGGTTGCTAAGTGTTGATTCCACCGT
1 A-AAGGTGGTTGCTAAGTGTTGATTCCACCGT
22836118 GTAACGGTTA
Statistics
Matches: 59, Mismatches: 9, Indels: 8
0.78 0.12 0.11
Matches are distributed among these distances:
39 1 0.02
40 4 0.07
41 18 0.31
42 15 0.25
43 17 0.29
44 4 0.07
ACGTcount: A:0.21, C:0.18, G:0.25, T:0.36
Consensus pattern (44 bp):
AAAGGTGGTTGCTAAGTGTTGATTCCACCGTATCATTGACTGTG
Found at i:22844521 original size:9 final size:9
Alignment explanation
Indices: 22844507--22844538 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
22844497 TAAGGGGACT
22844507 AAATTGAAA
1 AAATTGAAA
22844516 AAATTGAAA
1 AAATTGAAA
*
22844525 AAATTGTAA
1 AAATTGAAA
22844534 AAATT
1 AAATT
22844539 AGGGTAATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.62, C:0.00, G:0.09, T:0.28
Consensus pattern (9 bp):
AAATTGAAA
Found at i:22845028 original size:21 final size:21
Alignment explanation
Indices: 22844993--22845113 Score: 91
Period size: 21 Copynumber: 5.8 Consensus size: 21
22844983 GTTTAACTTA
* *
22844993 TATGAGTTTCCGTTCAACCCT
1 TATGGGTTTCTGTTCAACCCT
* * *
22845014 GATGGGTTTCTGTTCAGCTCCA
1 TATGGGTTTCTGTTCAAC-CCT
* * *
22845036 T-TGAGCTTCTGTTTAACCCT
1 TATGGGTTTCTGTTCAACCCT
* *
22845056 TATGGGTTTCTGTTCAGCTCT
1 TATGGGTTTCTGTTCAACCCT
* * *
22845077 TATGGGTTTCTGTTTAGCACT
1 TATGGGTTTCTGTTCAACCCT
* *
22845098 TATGTGCTTCTGTTCA
1 TATGGGTTTCTGTTCA
22845114 GCCTTCGGGC
Statistics
Matches: 77, Mismatches: 21, Indels: 4
0.75 0.21 0.04
Matches are distributed among these distances:
20 3 0.04
21 72 0.94
22 2 0.03
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.44
Consensus pattern (21 bp):
TATGGGTTTCTGTTCAACCCT
Found at i:22845072 original size:42 final size:42
Alignment explanation
Indices: 22844992--22845115 Score: 133
Period size: 42 Copynumber: 3.0 Consensus size: 42
22844982 TGTTTAACTT
* * * *
22844992 ATATGAGTTTCCGTTCAACCCTGATGGGTTTCTGTTCAGCTCC
1 ATATGAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGCT-C
22845035 AT-TGAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGCTC
1 ATATGAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGCTC
* * * * * * *
22845076 TTATGGGTTTCTGTTTAGCACTTATGTGCTTCTGTTCAGC
1 ATATGAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGC
22845116 CTTCGGGCTT
Statistics
Matches: 69, Mismatches: 11, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
41 2 0.03
42 65 0.94
43 2 0.03
ACGTcount: A:0.15, C:0.22, G:0.21, T:0.43
Consensus pattern (42 bp):
ATATGAGCTTCTGTTTAACCCTTATGGGTTTCTGTTCAGCTC
Found at i:22845111 original size:63 final size:63
Alignment explanation
Indices: 22844975--22845096 Score: 156
Period size: 63 Copynumber: 1.9 Consensus size: 63
22844965 TAACTCTCAC
* *
22844975 GAGCTTCTGTTTAACTTATATGAGTTTCCGTTCAACCCTGATGGGTTTCTGTTCAGCTCCATT
1 GAGCTTCTGTTTAACCTATATGAGTTTCCGTTCAACCCTGATGGGTTTCTGTTCAGCACCATT
* * * * * *
22845038 GAGCTTCTGTTTAACCCT-TATGGGTTTCTGTTCAGCTCTTATGGGTTTCTGTTTAGCAC
1 GAGCTTCTGTTTAA-CCTATATGAGTTTCCGTTCAACCCTGATGGGTTTCTGTTCAGCAC
22845097 TTATGTGCTT
Statistics
Matches: 50, Mismatches: 8, Indels: 2
0.83 0.13 0.03
Matches are distributed among these distances:
63 48 0.96
64 2 0.04
ACGTcount: A:0.16, C:0.21, G:0.20, T:0.43
Consensus pattern (63 bp):
GAGCTTCTGTTTAACCTATATGAGTTTCCGTTCAACCCTGATGGGTTTCTGTTCAGCACCATT
Found at i:22866280 original size:201 final size:201
Alignment explanation
Indices: 22865613--22866603 Score: 1386
Period size: 201 Copynumber: 5.0 Consensus size: 201
22865603 GCGGTGATCT
* * * * * **
22865613 TAACTGCTCCATTCTACTAATATCTTCCCTAATTGG-CAACTCGGCAGCTGGAGCAGTGAGAATT
1 TAACTGCTCCGTTCTACCAATATCTT-CCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACC
** * * * ** * *
22865677 ACAGTCTTGCGTCTATTCTTCCTCAAGGGGGATTGGTGTTGTGAAGTA-ATGGCAGACTTGGCCC
65 ACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCT-GCATACTTGGCCC
* ** * * * ** *
22865741 TCTCAACCTCACTCCTATCTTGTACAATTGCATCCACTTCTTCAGTTGTGCCTTTTCCTTGAAGC
129 TCTCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTCCCTACAACC
22865806 GGTGCCT-
194 GGTGCCTC
* * * * *
22865813 TCAACTGCTCCGTACTACCAATATGTTCCTTATTTGCCAAATCTGCAGCTGGAGCAGTAAGAATC
1 T-AACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACC
*
22865878 ACAGTCTTGCGTCTGTTCCTCCTCGAGGGGGCTTC---TTGT----T-G-TGC---CTTGGCCCT
65 ACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGCCCT
* * * *
22865931 CTCAACCTCACTACTATCTTCCACAATTGCATCCAGTTCTTCAGTCGTGCCTTTTCCTACAAGCG
130 CTCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTCCCTACAACCG
22865996 GTGCCTC
195 GTGCCTC
22866003 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCA
1 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCA
* * *
22866068 CAGTTTTGCGTCTGCCCCTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGTCCTC
66 CAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGCCCTC
*
22866133 TCGACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTCCCTACAACCGG
131 TCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTCCCTACAACCGG
22866198 TGCCTC
196 TGCCTC
*
22866204 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTTAGAACCA
1 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCA
*
22866269 CAGTTTTGCGTCTGC-CCTTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGCCCT
66 CAGTCTTGCGTCTGCTCC-TCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGCCCT
* *
22866333 CTCGACCTCACTACTATCTTCAACAATTGCATCCAGTTCTTCAGTCGTGCCTTTCCCTACAACCG
130 CTCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTCCCTACAACCG
22866398 GTGCCTC
195 GTGCCTC
*
22866405 TAACTGCTCCGTTCTACCAATATCTACCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCA
1 TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCA
22866470 CAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGCCCTC
66 CAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGCCCTC
* * *
22866535 TCAACCTCACTACTGTCTTCAACAATTGCATCCAATTCTTCAGTCGAGCCCTTT-CCTCCAACCG
131 TCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTG-CCTTTCCCTACAACCG
*
22866599 ATGCC
195 GTGCC
22866604 AAATCGGAAG
Statistics
Matches: 724, Mismatches: 48, Indels: 37
0.89 0.06 0.05
Matches are distributed among these distances:
189 163 0.23
190 1 0.00
192 6 0.01
193 1 0.00
194 1 0.00
196 1 0.00
197 1 0.00
198 7 0.01
200 10 0.01
201 526 0.73
202 7 0.01
ACGTcount: A:0.20, C:0.30, G:0.19, T:0.31
Consensus pattern (201 bp):
TAACTGCTCCGTTCTACCAATATCTTCCTTATTGGCCAAATCGGCAGCTGGAGCAGTAAGAACCA
CAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTCTTGTTGTGAAGTAGCTGCATACTTGGCCCTC
TCAACCTCACTACTATCTTCAACAATTGCATCCAATTCTTCAGTCGTGCCTTTCCCTACAACCGG
TGCCTC
Found at i:22866651 original size:162 final size:162
Alignment explanation
Indices: 22866439--22866734 Score: 477
Period size: 162 Copynumber: 1.8 Consensus size: 162
22866429 TACCTTATTG
* *
22866439 GCCAAATCGGCAGCTGGAGCAGTAAGAACCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTC
1 GCCAAATCGGAAGCTAGAGCAGTAAGAACCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTC
* * * *
22866504 TTGTTGTGAAGTAGCTG-CATACTTGGCCCTCTCAACCTCACTACTGTCTTCAACAATTGCATCC
66 TTGTTGTGAAGTAAC-GACACACTTGACCCTCTCAACCTCACTACTCTCTTCAACAATTGCATCC
22866568 AATTCTTCAGTCGAGCCCTTTCCTCCAACCGAT
130 AATTCTTCAGTCGAGCCCTTTCCTCCAACCGAT
* *
22866601 GCCAAATCGGAAGCTAGAGCGGTAAGAGCCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTC
1 GCCAAATCGGAAGCTAGAGCAGTAAGAACCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTC
* * *
22866666 TTGTTGTGAAGTAACGACACACTTGACCTTCTCAACCTCACTACTCTCTTCAACAATTGCCTCTA
66 TTGTTGTGAAGTAACGACACACTTGACCCTCTCAACCTCACTACTCTCTTCAACAATTGCATCCA
22866731 ATTC
131 ATTC
22866735 AGCACTCCTG
Statistics
Matches: 122, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
161 1 0.01
162 121 0.99
ACGTcount: A:0.22, C:0.31, G:0.20, T:0.27
Consensus pattern (162 bp):
GCCAAATCGGAAGCTAGAGCAGTAAGAACCACAGTCTTGCGTCTGCTCCTCCTCGAGGGGGCTTC
TTGTTGTGAAGTAACGACACACTTGACCCTCTCAACCTCACTACTCTCTTCAACAATTGCATCCA
ATTCTTCAGTCGAGCCCTTTCCTCCAACCGAT
Found at i:22869447 original size:27 final size:28
Alignment explanation
Indices: 22869407--22869463 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 28
22869397 AATATTATAT
*
22869407 TTAATATTTGAATAATT-TAGTTAAAAAA
1 TTAATATTTAAAT-ATTATAGTTAAAAAA
*
22869435 TTAA-ATTTAAATATTATATTTAAAAAA
1 TTAATATTTAAATATTATAGTTAAAAAA
22869462 TT
1 TT
22869464 TTAACCTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
26 3 0.12
27 19 0.73
28 4 0.15
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (28 bp):
TTAATATTTAAATATTATAGTTAAAAAA
Found at i:22872468 original size:12 final size:12
Alignment explanation
Indices: 22872451--22872475 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22872441 TGTAGGTTTC
22872451 TAAAAATGGAAA
1 TAAAAATGGAAA
22872463 TAAAAATGGAAA
1 TAAAAATGGAAA
22872475 T
1 T
22872476 GATCCATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (12 bp):
TAAAAATGGAAA
Found at i:22881224 original size:62 final size:62
Alignment explanation
Indices: 22881158--22881277 Score: 170
Period size: 62 Copynumber: 1.9 Consensus size: 62
22881148 AGATGATAAA
* * *
22881158 TTTTTAGAATTAAAACTAAATTAAA-AATTTTTGTAAATATTGAGGGCTAAATTTATTACTTT
1 TTTTTAGAATTAAAACTAAA-GAAATAAATTTTGTAAAGATTGAGGGCTAAATTTATTACTTT
* * *
22881220 TTTTTAGAATTTAAATTAAAGAAATAAATTTTGTAAAGATTGAGGGCTACATTTATTA
1 TTTTTAGAATTAAAACTAAAGAAATAAATTTTGTAAAGATTGAGGGCTAAATTTATTA
22881278 TTATTATTTT
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
61 3 0.06
62 48 0.94
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (62 bp):
TTTTTAGAATTAAAACTAAAGAAATAAATTTTGTAAAGATTGAGGGCTAAATTTATTACTTT
Found at i:22887541 original size:40 final size:41
Alignment explanation
Indices: 22887471--22887562 Score: 114
Period size: 40 Copynumber: 2.2 Consensus size: 41
22887461 TTAAAATTAT
* * *
22887471 TTATATTAAAAAAACACTACCATAAATATAAAAAATATTTTA
1 TTATATT-AAAAAACACCACAATAAATATAAAAAATATCTTA
* *
22887513 TTATATTAAAAAACACCA-AATAACTATAATAAATATCTTA
1 TTATATTAAAAAACACCACAATAAATATAAAAAATATCTTA
*
22887553 TTGTATTAAA
1 TTATATTAAA
22887563 TATAATTTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
40 27 0.61
41 10 0.23
42 7 0.16
ACGTcount: A:0.54, C:0.10, G:0.01, T:0.35
Consensus pattern (41 bp):
TTATATTAAAAAACACCACAATAAATATAAAAAATATCTTA
Found at i:22893135 original size:37 final size:37
Alignment explanation
Indices: 22893040--22893193 Score: 121
Period size: 37 Copynumber: 4.2 Consensus size: 37
22893030 CCTGTTTTGA
* * * *
22893040 CGTGTTATCGAGTGAATTAGCTCTTATGAGCATTTGG
1 CGTGTTATCGGGTGGATTAGCTCTTACGAGCAATTGG
* * **** *
22893077 CATGTTTTTTATTGGACTAGCTCTT-CAGAGCAATTGG
1 CGTGTTATCGGGTGGATTAGCTCTTAC-GAGCAATTGG
* * *
22893114 CGTGTTATCGGGTTGATTAGCTCTTACGAGCAGTTGA
1 CGTGTTATCGGGTGGATTAGCTCTTACGAGCAATTGG
* * * **
22893151 CGTGTTATCTGGTGGTTTAGCTCTTATGAGTGATTGG
1 CGTGTTATCGGGTGGATTAGCTCTTACGAGCAATTGG
22893188 CGTGTT
1 CGTGTT
22893194 TCAGTTAGAT
Statistics
Matches: 88, Mismatches: 27, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
37 87 0.99
38 1 0.01
ACGTcount: A:0.18, C:0.14, G:0.28, T:0.40
Consensus pattern (37 bp):
CGTGTTATCGGGTGGATTAGCTCTTACGAGCAATTGG
Found at i:22904756 original size:42 final size:43
Alignment explanation
Indices: 22904686--22904768 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 43
22904676 TCTTACATGT
* *
22904686 AATCAAATATCGATGCCATTGTCCTAGACAGGGTCTTACACAA
1 AATCAAATATCGATGCCAATATCCTAGACAGGGTCTTACACAA
* * *
22904729 AATCATATA-CGATGCCAATATCTTAGACATGGTCTTACAC
1 AATCAAATATCGATGCCAATATCCTAGACAGGGTCTTACAC
22904769 TTAAATCTCA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 27 0.77
43 8 0.23
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (43 bp):
AATCAAATATCGATGCCAATATCCTAGACAGGGTCTTACACAA
Found at i:22908787 original size:15 final size:17
Alignment explanation
Indices: 22908755--22908789 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
22908745 CACGGGTGGC
22908755 CACATGGGCGTGTGCCA
1 CACATGGGCGTGTGCCA
22908772 CACATGGGCG-GT-CCA
1 CACATGGGCGTGTGCCA
22908787 CAC
1 CAC
22908790 TGCCGTGTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 6 0.33
16 2 0.11
17 10 0.56
ACGTcount: A:0.20, C:0.34, G:0.31, T:0.14
Consensus pattern (17 bp):
CACATGGGCGTGTGCCA
Found at i:22913261 original size:19 final size:19
Alignment explanation
Indices: 22913237--22913302 Score: 62
Period size: 19 Copynumber: 3.4 Consensus size: 19
22913227 ATTTATTATT
22913237 TTAATTTTTTGAGTTTCTA
1 TTAATTTTTTGAGTTTCTA
*
22913256 TTAATTTTATTGA-TTTTTA
1 TTAATTTT-TTGAGTTTCTA
** **
22913275 AAAATTTTTAAAAGTTTCTA
1 TTAATTTTT-TGAGTTTCTA
22913295 TTAATTTT
1 TTAATTTT
22913303 CATATTATTT
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
18 1 0.03
19 20 0.56
20 15 0.42
ACGTcount: A:0.30, C:0.03, G:0.06, T:0.61
Consensus pattern (19 bp):
TTAATTTTTTGAGTTTCTA
Found at i:22913899 original size:30 final size:30
Alignment explanation
Indices: 22913863--22913919 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
22913853 AAACCTTTTA
*
22913863 TTTTTCCCCAAAATTTTTACTCCCTCCCAT
1 TTTTTCCCCAAAACTTTTACTCCCTCCCAT
* *
22913893 TTTTTCCCTAAAACTTTTATTCCCTCC
1 TTTTTCCCCAAAACTTTTACTCCCTCC
22913920 TCATCTCACC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.35, G:0.00, T:0.46
Consensus pattern (30 bp):
TTTTTCCCCAAAACTTTTACTCCCTCCCAT
Found at i:22918461 original size:7 final size:7
Alignment explanation
Indices: 22918449--22918483 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
22918439 TACTAGTAGT
22918449 AATAATA
1 AATAATA
22918456 AATAATA
1 AATAATA
22918463 AATAATA
1 AATAATA
22918470 AATAATA
1 AATAATA
22918477 AATAATA
1 AATAATA
22918484 TTAACTAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (7 bp):
AATAATA
Found at i:22923070 original size:20 final size:19
Alignment explanation
Indices: 22923044--22923094 Score: 66
Period size: 20 Copynumber: 2.6 Consensus size: 19
22923034 TTGAAGCAGG
* *
22923044 AATATCGATGCCTTAGGAA
1 AATATCGATACCTTAAGAA
22923063 ATATATCGATACCTTAAGAA
1 A-ATATCGATACCTTAAGAA
22923083 AAGTATCGATAC
1 AA-TATCGATAC
22923095 TGGATCGATA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 2 0.07
20 26 0.93
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (19 bp):
AATATCGATACCTTAAGAA
Found at i:22923829 original size:13 final size:13
Alignment explanation
Indices: 22923811--22923847 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
22923801 TTGGATAGTA
22923811 AAAAATATTATTT
1 AAAAATATTATTT
*
22923824 -AAAA-ATTAATT
1 AAAAATATTATTT
22923835 AAAAATATTATTT
1 AAAAATATTATTT
22923848 CAAATGAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 4
0.77 0.08 0.15
Matches are distributed among these distances:
11 6 0.30
12 8 0.40
13 6 0.30
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (13 bp):
AAAAATATTATTT
Found at i:22925451 original size:25 final size:25
Alignment explanation
Indices: 22925422--22925519 Score: 76
Period size: 25 Copynumber: 4.0 Consensus size: 25
22925412 GCACTCTCTC
22925422 GAGCCATATAACAGGAAGCTCATGT
1 GAGCCATATAACAGGAAGCTCATGT
* *
22925447 GAGCCATGTAACAGGAAACGT-AT-T
1 GAGCCATATAACAGGAAGC-TCATGT
** * **
22925471 CGAGCTTTATAACTGGAAGCTCATAA
1 -GAGCCATATAACAGGAAGCTCATGT
**
22925497 GAGCCATAT-TTAGGAAGCTCATG
1 GAGCCATATAACAGGAAGCTCATG
22925520 CTAGCTAATA
Statistics
Matches: 55, Mismatches: 14, Indels: 9
0.71 0.18 0.12
Matches are distributed among these distances:
24 12 0.22
25 42 0.76
26 1 0.02
ACGTcount: A:0.35, C:0.18, G:0.23, T:0.23
Consensus pattern (25 bp):
GAGCCATATAACAGGAAGCTCATGT
Found at i:22925690 original size:25 final size:25
Alignment explanation
Indices: 22925629--22925695 Score: 118
Period size: 25 Copynumber: 2.7 Consensus size: 25
22925619 AGCCAATTAA
*
22925629 CGGGAAGCTCACGAAGAGTCATAAT
1 CGGGAAGCTCATGAAGAGTCATAAT
22925654 CGGGAAGCTCATGAAGAGTCATAAT
1 CGGGAAGCTCATGAAGAGTCATAAT
22925679 CGGGAAGCTCAT-AAGAG
1 CGGGAAGCTCATGAAGAG
22925696 CTGTGGTGTG
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
24 5 0.12
25 36 0.88
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.16
Consensus pattern (25 bp):
CGGGAAGCTCATGAAGAGTCATAAT
Found at i:22926160 original size:21 final size:21
Alignment explanation
Indices: 22926136--22926178 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
22926126 TAAATTTAAC
*
22926136 TCAATTTAATACAATTCATAT
1 TCAATTCAATACAATTCATAT
*
22926157 TCAATTCAATCCAATTCATAT
1 TCAATTCAATACAATTCATAT
22926178 T
1 T
22926179 TTAGGCAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.42
Consensus pattern (21 bp):
TCAATTCAATACAATTCATAT
Found at i:22927587 original size:9 final size:9
Alignment explanation
Indices: 22927570--22927617 Score: 51
Period size: 9 Copynumber: 5.1 Consensus size: 9
22927560 GTTTTCAAAT
*
22927570 AATTAAAAA
1 AATTTAAAA
22927579 AATTTAAAA
1 AATTTAAAA
22927588 AATATTAAAA
1 AAT-TTAAAA
* *
22927598 AATATACAA
1 AATTTAAAA
22927607 AATTATAAAA
1 AATT-TAAAA
22927617 A
1 A
22927618 TTATAAGAAC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
9 18 0.56
10 14 0.44
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (9 bp):
AATTTAAAA
Found at i:22927608 original size:10 final size:9
Alignment explanation
Indices: 22927575--22927623 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
22927565 CAAATAATTA
*
22927575 AAAAAATTT
1 AAAAAATAT
22927584 AAAAAATATT
1 AAAAAATA-T
22927594 AAAAAATAT
1 AAAAAATAT
*
22927603 ACAAAATTAT
1 A-AAAAATAT
*
22927613 AAAAATTAT
1 AAAAAATAT
22927622 AA
1 AA
22927624 GAACATAATG
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
9 19 0.53
10 17 0.47
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (9 bp):
AAAAAATAT
Found at i:22927608 original size:19 final size:19
Alignment explanation
Indices: 22927570--22927623 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
22927560 GTTTTCAAAT
*
22927570 AATTA-AAAAAATTTAAAA
1 AATTATAAAAAATATAAAA
*
22927588 AA-TATTAAAAAATATACAA
1 AATTA-TAAAAAATATAAAA
*
22927607 AATTATAAAAATTATAA
1 AATTATAAAAAATATAA
22927624 GAACATAATG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 2 0.07
18 2 0.07
19 23 0.79
20 2 0.07
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (19 bp):
AATTATAAAAAATATAAAA
Found at i:22927618 original size:9 final size:9
Alignment explanation
Indices: 22927570--22927623 Score: 56
Period size: 10 Copynumber: 5.9 Consensus size: 9
22927560 GTTTTCAAAT
*
22927570 AATTAAAAA
1 AATTATAAA
22927579 AATT-TAAA
1 AATTATAAA
*
22927587 AAATATTAAA
1 AATTA-TAAA
*
22927597 AAATATACAA
1 AATTATA-AA
22927607 AATTATAAA
1 AATTATAAA
22927616 AATTATAA
1 AATTATAA
22927624 GAACATAATG
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
8 6 0.15
9 16 0.41
10 17 0.44
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.30
Consensus pattern (9 bp):
AATTATAAA
Found at i:22928368 original size:18 final size:18
Alignment explanation
Indices: 22928345--22928382 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
22928335 CTTTCTCCTT
22928345 ATATATATAAAACAAAGG
1 ATATATATAAAACAAAGG
*
22928363 ATATATATAAAAGAAAGG
1 ATATATATAAAACAAAGG
22928381 AT
1 AT
22928383 TGTATGAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.61, C:0.03, G:0.13, T:0.24
Consensus pattern (18 bp):
ATATATATAAAACAAAGG
Found at i:22933009 original size:22 final size:22
Alignment explanation
Indices: 22932942--22933022 Score: 60
Period size: 22 Copynumber: 3.7 Consensus size: 22
22932932 TTCGTATAAA
* * *
22932942 ATTTT-AATATTTTAAATTAAC
1 ATTTTAAATTTTTTATATTTAC
* *
22932963 -TTTTAAAATTTATAT-TTTAACC
1 ATTTTAAATTTTTTATATTT-A-C
22932985 ATTTTAAATTTTTTATATTTAC
1 ATTTTAAATTTTTTATATTTAC
* *
22933007 ATTTAAAATTATTTAT
1 ATTTTAAATTTTTTAT
22933023 TAAGCTAAAT
Statistics
Matches: 46, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
20 6 0.13
21 7 0.15
22 16 0.35
23 14 0.30
24 3 0.07
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (22 bp):
ATTTTAAATTTTTTATATTTAC
Found at i:22939086 original size:13 final size:13
Alignment explanation
Indices: 22939068--22939093 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
22939058 TTGGATCCAT
22939068 ACCAAAACAATCA
1 ACCAAAACAATCA
22939081 ACCAAAACAATCA
1 ACCAAAACAATCA
22939094 TGATACATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.31, G:0.00, T:0.08
Consensus pattern (13 bp):
ACCAAAACAATCA
Found at i:22944163 original size:25 final size:26
Alignment explanation
Indices: 22944135--22944195 Score: 76
Period size: 25 Copynumber: 2.5 Consensus size: 26
22944125 GGCTCTCCGA
22944135 AGCTTCCT-GA-TAATTGACTCTTCAG
1 AGCTTCCTCGATTAA-TGACTCTTCAG
*
22944160 AGCTT-CTCGATTAATGGCTCTTCAG
1 AGCTTCCTCGATTAATGACTCTTCAG
22944185 AGCTT-CTCGAT
1 AGCTTCCTCGAT
22944196 ATTGGCTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
24 2 0.06
25 28 0.85
26 3 0.09
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (26 bp):
AGCTTCCTCGATTAATGACTCTTCAG
Found at i:22944211 original size:24 final size:25
Alignment explanation
Indices: 22944156--22944238 Score: 93
Period size: 24 Copynumber: 3.4 Consensus size: 25
22944146 AATTGACTCT
*
22944156 TCAGAGCTTCTCGATTAATGGCTCT
1 TCAGAGCTTCTCGATTAATGGCTCA
*
22944181 TCAGAGCTTCTCGA-TATTGGCTCA
1 TCAGAGCTTCTCGATTAATGGCTCA
*
22944205 T-ATGAGCTTCTCG-TTAACGGCTC-
1 TCA-GAGCTTCTCGATTAATGGCTCA
22944228 TCCAGAGCTTC
1 T-CAGAGCTTC
22944239 CCATGTCATG
Statistics
Matches: 50, Mismatches: 4, Indels: 9
0.79 0.06 0.14
Matches are distributed among these distances:
23 2 0.04
24 33 0.66
25 15 0.30
ACGTcount: A:0.19, C:0.27, G:0.20, T:0.34
Consensus pattern (25 bp):
TCAGAGCTTCTCGATTAATGGCTCA
Found at i:22944251 original size:49 final size:49
Alignment explanation
Indices: 22944159--22944259 Score: 125
Period size: 49 Copynumber: 2.1 Consensus size: 49
22944149 TGACTCTTCA
* * * *
22944159 GAGCTTCTCGATTAATGGCTCTTCAGAGCTTCTCGATATTGGCTCATAT
1 GAGCTTCTCGATTAACGGCTCTCCAGAGCTTCTCCATATTGGCTCACAT
*
22944208 GAGCTTCTCG-TTAACGGCTCTCCAGAGCTTC-CCATGTCATGGCTCACAT
1 GAGCTTCTCGATTAACGGCTCTCCAGAGCTTCTCCATAT--TGGCTCACAT
22944257 GAG
1 GAG
22944260 ATTCCCATTT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
47 4 0.09
48 19 0.42
49 22 0.49
ACGTcount: A:0.20, C:0.27, G:0.22, T:0.32
Consensus pattern (49 bp):
GAGCTTCTCGATTAACGGCTCTCCAGAGCTTCTCCATATTGGCTCACAT
Found at i:22951171 original size:20 final size:20
Alignment explanation
Indices: 22951135--22951174 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
22951125 CGGAGATTTG
*
22951135 CCTTTTTTTTGTTTATTTTA
1 CCTTTTTTTTGTATATTTTA
22951155 CCTTTTATTTTG-ATATTTTA
1 CCTTTT-TTTTGTATATTTTA
22951175 TGTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.70
Consensus pattern (20 bp):
CCTTTTTTTTGTATATTTTA
Found at i:22951954 original size:29 final size:29
Alignment explanation
Indices: 22951919--22951978 Score: 93
Period size: 29 Copynumber: 2.1 Consensus size: 29
22951909 GGTGGGCCAG
*
22951919 ACAGGCGTGTGCTTGGTCGTGTAGATCAC
1 ACAGGCGTGTGCTTGGCCGTGTAGATCAC
* *
22951948 ACAGGCGTGTTCTTGGCCGTGTGGATCAC
1 ACAGGCGTGTGCTTGGCCGTGTAGATCAC
22951977 AC
1 AC
22951979 GGGCTAGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.17, C:0.23, G:0.33, T:0.27
Consensus pattern (29 bp):
ACAGGCGTGTGCTTGGCCGTGTAGATCAC
Found at i:22952942 original size:16 final size:16
Alignment explanation
Indices: 22952890--22952942 Score: 79
Period size: 17 Copynumber: 3.2 Consensus size: 16
22952880 ATAGAAAGTC
22952890 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
*
22952906 GAAAGATATGGTTATCGA
1 -AAAGATATGGGTATC-A
22952924 AAAGATATGGGTATCA
1 AAAGATATGGGTATCA
22952940 AAA
1 AAA
22952943 TCTGAGATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
16 4 0.12
17 28 0.85
18 1 0.03
ACGTcount: A:0.45, C:0.06, G:0.25, T:0.25
Consensus pattern (16 bp):
AAAGATATGGGTATCA
Found at i:22956492 original size:17 final size:17
Alignment explanation
Indices: 22956470--22956519 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
22956460 ATAGAAAGTC
* *
22956470 AAAGATATGAGTATTAG
1 AAAGATATGGGTATCAG
22956487 AAAGATATGGGTATCAG
1 AAAGATATGGGTATCAG
*
22956504 AAATATATGGGTATCA
1 AAAGATATGGGTATCA
22956520 AAATCTGAGA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.28
Consensus pattern (17 bp):
AAAGATATGGGTATCAG
Found at i:22971748 original size:640 final size:640
Alignment explanation
Indices: 22970594--22971782 Score: 1518
Period size: 640 Copynumber: 1.9 Consensus size: 640
22970584 TGCTAAGAAA
* ** *
22970594 TTTTACTGATTACATGTTTAATTTGATGAAATGGAACAAATTGCATAAAATGTAAAAGTTGAATT
1 TTTTACCGATTACATGTTTAATTTGATGAAAAAGAACAAATTGCATAAAATGCAAAAGTTGAATT
* * * * *
22970659 CTAGTAGCTAAAGGTACCAATTATCTATGGAATTCAAAATTGAAGGACCTTATATGGGAAATAGA
66 CTAATAGCTAAAGGGACCAAATAGCTATGGAATTCAAAATTGAAGGACCTTATATGGCAAATAGA
* * * * *
22970724 CCATTTAGAGGAGTTAGTATATAAGGATGATTATTCATCATTGGAAATTTAAAAAAAGTAAAGGG
131 CCATTAAGAGGAGTTAGTAGATAAGGATGATGATTCATCATTGGAAATTTAAAAAAAGAAAAGGA
* * * * ** * * *
22970789 TTAATTTGAAAATATGATAAATAATGATGATAAAAGAAATAAATAATTAAATTAAAGTCATTTTC
196 TGAAATTGAAAAGATGATAAATAAAGATGATAAAAGAAATAAATAAACAAAATAAAGTAATATTC
* *** ** *
22970854 ATCATTTTTCCTAAAACAAAATACATAGAAACCCTAGTTTTGATGCTTGAAGATAGACAAGCTTA
261 ATCATCTTTCCTAAAACAAAATACATAGAAACCCTAGCCATGAAACCTGAAGATAGACAAGCTTA
* * * * * * *
22970919 TTTTGATTAATTAAGTGAGTATTATTATCCTATTTTTTACTGATTTTTATGTTTCCAAGATAATT
326 TTTGGATAAATTAAGTAAGTATCATTATCCTAGTTTTTAATGATTTTTATGTTTCCAAGATAATA
* * *
22970984 TTAGCTTAATTTAGCTATCTCGGGGATTAATTTGCAAAACTATTAAAGTGTTAGGATTTTTCCAT
391 ATAGCTTAATCTAGCTATCTCGAGGATTAATTTGCAAAACTATTAAAGTGTTAGGATTTTTCCAT
*
22971049 GGATGAATATAGTTGAATTATGAAGTTCTATGGTAGAAAATGAAAGGTTGGTGATAGATAAACAA
456 GGATGAATATAGATGAATTATGAAGTTCTATGGTAGAAAATGAAAGGTTGGTGATAGATAAACAA
22971114 CCTTTGTAAAGAGAATTTTGATGAAATTACCACAAATTTGAGTCTAGATGGAACTTATTTTAATA
521 CCTTTGTAAAGAGAATTTTGATGAAATTACCACAAATTTGAGTCTAGATGGAACTTATTTTAATA
22971179 TTATTTCATGGTCTGCATTATGATAGAAATGTCGTATGAAAATTTCGTAAAATTT
586 TTATTTCATGGTCTGCATTATGATAGAAATGTCGTATGAAAATTTCGTAAAATTT
* * *
22971234 TTTTACCGATTACATGTTTAATTTGATGAAAAAGACCAAATTGCATAAAGTGCAAAAGTTGGATT
1 TTTTACCGATTACATGTTTAATTTGATGAAAAAGAACAAATTGCATAAAATGCAAAAGTTGAATT
* * *
22971299 CTAATAGCTAAAGGGATCAAATAGCTATGGAATTCAAAATTGGAGGTCCTTATATGGCAAATAGA
66 CTAATAGCTAAAGGGACCAAATAGCTATGGAATTCAAAATTGAAGGACCTTATATGGCAAATAGA
* *
22971364 CCATTAAGAGGAGTTAGTAGATAAGTATGATGATTCATCATTGGAAAATTT-AATAAAGAAAAGG
131 CCATTAAGAGGAGTTAGTAGATAAGGATGATGATTCATCATTGG-AAATTTAAAAAAAGAAAAGG
* * *
22971428 ATGAAATTGGAAAGATGAAATAAATAAAGATGAT-AAA-TAATAAAATAAAACAAAATACCA-TA
195 ATGAAATTGAAAAGATG--ATAAATAAAGATGATAAAAGAAAT-AAAT-AAACAAAATA-AAGTA
** * * * *
22971490 ATATT-ATCATCTTTCCTAAATTAGAA-AGATGGAAACCCTAGCCATGAAAACCT-AAGTTCA-A
255 ATATTCATCATCTTTCCTAAAACAAAATACATAGAAACCCTAGCCATG-AAACCTGAAGAT-AGA
* ** * * *
22971551 GCAAGCTTATTTGGCTAAATTGGGTAAGTATCATTGT-CTCGTTTTTAATGATTTTTATGTTTTC
318 -CAAGCTTATTTGGATAAATTAAGTAAGTATCATTATCCTAGTTTTTAATGATTTTTATGTTTCC
* ** * **
22971615 GAGATCGTAATAGCTTAATCTAGCTATCTCGAGGATTAATTTGGAAAGTTATTAAAGTGTTAAGG
382 AAGATAATAATAGCTTAATCTAGCTATCTCGAGGATTAATTTGCAAAACTATTAAAGTGTT-AGG
* * * *
22971680 -TTTTTCTATGGATGAGTAT-GCATGAATTATGAAGTTTTATGGTAGAAAATGAAAGGTTGTTGA
446 ATTTTTCCATGGATGAATATAG-ATGAATTATGAAGTTCTATGGTAGAAAATGAAAGGTTGGTGA
* *
22971743 TAGATAAACAACTTTTGTAAAGGGAATTTTGATGAAATTA
510 TAGATAAACAACCTTTGTAAAGAGAATTTTGATGAAATTA
22971783 TGATTTAGGG
Statistics
Matches: 462, Mismatches: 76, Indels: 22
0.82 0.14 0.04
Matches are distributed among these distances:
639 1 0.00
640 369 0.80
641 65 0.14
642 26 0.06
643 1 0.00
ACGTcount: A:0.39, C:0.09, G:0.17, T:0.35
Consensus pattern (640 bp):
TTTTACCGATTACATGTTTAATTTGATGAAAAAGAACAAATTGCATAAAATGCAAAAGTTGAATT
CTAATAGCTAAAGGGACCAAATAGCTATGGAATTCAAAATTGAAGGACCTTATATGGCAAATAGA
CCATTAAGAGGAGTTAGTAGATAAGGATGATGATTCATCATTGGAAATTTAAAAAAAGAAAAGGA
TGAAATTGAAAAGATGATAAATAAAGATGATAAAAGAAATAAATAAACAAAATAAAGTAATATTC
ATCATCTTTCCTAAAACAAAATACATAGAAACCCTAGCCATGAAACCTGAAGATAGACAAGCTTA
TTTGGATAAATTAAGTAAGTATCATTATCCTAGTTTTTAATGATTTTTATGTTTCCAAGATAATA
ATAGCTTAATCTAGCTATCTCGAGGATTAATTTGCAAAACTATTAAAGTGTTAGGATTTTTCCAT
GGATGAATATAGATGAATTATGAAGTTCTATGGTAGAAAATGAAAGGTTGGTGATAGATAAACAA
CCTTTGTAAAGAGAATTTTGATGAAATTACCACAAATTTGAGTCTAGATGGAACTTATTTTAATA
TTATTTCATGGTCTGCATTATGATAGAAATGTCGTATGAAAATTTCGTAAAATTT
Found at i:22973823 original size:24 final size:26
Alignment explanation
Indices: 22973789--22973875 Score: 69
Period size: 24 Copynumber: 3.5 Consensus size: 26
22973779 CCCGTTATTA
*
22973789 GCTCTTGTGAGCA-TCCTGATAT-TG
1 GCTCTTATGAGCATTCCTGATATATG
*
22973813 GCT-TTATTGAG-ATTCTTGATATATG
1 GCTCTTA-TGAGCATTCCTGATATATG
* * *
22973838 GCTCTTATGAGC-TTCCCGTTA-ATA
1 GCTCTTATGAGCATTCCTGATATATG
*
22973862 GCTCTTCTGAGCAT
1 GCTCTTATGAGCAT
22973876 CTCGATTGGT
Statistics
Matches: 50, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
23 3 0.06
24 28 0.56
25 16 0.32
26 3 0.06
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.40
Consensus pattern (26 bp):
GCTCTTATGAGCATTCCTGATATATG
Found at i:22979194 original size:27 final size:27
Alignment explanation
Indices: 22979158--22979213 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
22979148 TCTGCCTAGC
22979158 TTTTCTGTACAAATAACTCATTATTCT
1 TTTTCTGTACAAATAACTCATTATTCT
*
22979185 TTTTCTGTACAAATAACTCATTCTTCT
1 TTTTCTGTACAAATAACTCATTATTCT
22979212 TT
1 TT
22979214 CTTAAAGTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.04, T:0.50
Consensus pattern (27 bp):
TTTTCTGTACAAATAACTCATTATTCT
Found at i:22979358 original size:14 final size:14
Alignment explanation
Indices: 22979339--22979374 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
22979329 AGGAATTAAA
22979339 AGAAGGCATTACGG
1 AGAAGGCATTACGG
22979353 AGAAGGCATTACGG
1 AGAAGGCATTACGG
22979367 AGAAGGCA
1 AGAAGGCA
22979375 ATTAAGGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.39, C:0.14, G:0.36, T:0.11
Consensus pattern (14 bp):
AGAAGGCATTACGG
Found at i:22996959 original size:26 final size:27
Alignment explanation
Indices: 22996903--22996999 Score: 135
Period size: 27 Copynumber: 3.7 Consensus size: 27
22996893 TATAACAGTT
* * *
22996903 ATTTTACCCTCTGAGGGTATTTTGGTA
1 ATTTTACCCTATGAGGGTATTTCGGTC
*
22996930 ATTTTACCCTATG-GGGTATGTCGGTC
1 ATTTTACCCTATGAGGGTATTTCGGTC
*
22996956 ATTTTACCCTATGAGGGTATTTCGATC
1 ATTTTACCCTATGAGGGTATTTCGGTC
22996983 ATTTTACCCTATG-GGGT
1 ATTTTACCCTATGAGGGT
22997000 CTCGGTGCAG
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
26 27 0.43
27 36 0.57
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.41
Consensus pattern (27 bp):
ATTTTACCCTATGAGGGTATTTCGGTC
Found at i:23012230 original size:29 final size:29
Alignment explanation
Indices: 23012124--23012232 Score: 105
Period size: 31 Copynumber: 3.6 Consensus size: 29
23012114 ACGAGGATGT
*
23012124 CGAATTGGATTTGTATATGATTATACATTGC
1 CGAATT-GATTCGTATATGA-TATACATTGC
* *
23012155 CGAACTTGATTCTTGTATGGATATACATTGC
1 CGAA-TTGATTCGTATAT-GATATACATTGC
* *
23012186 CGAATTG-TTTGTTATATGATATA-AGTTGT
1 CGAATTGATTCG-TATATGATATACA-TTGC
23012215 CGAATTGATTCGTATATG
1 CGAATTGATTCGTATATG
23012233 GTTGTACCTT
Statistics
Matches: 65, Mismatches: 8, Indels: 12
0.76 0.09 0.14
Matches are distributed among these distances:
28 1 0.02
29 24 0.37
30 10 0.15
31 26 0.40
32 4 0.06
ACGTcount: A:0.28, C:0.10, G:0.20, T:0.42
Consensus pattern (29 bp):
CGAATTGATTCGTATATGATATACATTGC
Found at i:23012406 original size:184 final size:184
Alignment explanation
Indices: 23012061--23012735 Score: 944
Period size: 184 Copynumber: 3.7 Consensus size: 184
23012051 TATACATTTT
* * *
23012061 TGAAATTAATTCGTACATTGTTATATATTGTCGATATTGAATTGTTTACGAATACGAGGATG-TC
1 TGAAATTAATTCGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATA-TAGGATGCT-
* * *
23012125 GAATTGGATTTGTATATGATTATACATTGCCGAACTTGATTCTTGTATGGATATACATTGCCGAA
64 GAATTGGATTTGTATATGATTATACATTTCCGAACTTGATTCGTGTATGGTTATACATTGCCGAA
* *
23012190 TTGTTTGTTATAT-GATATAAGTTG-TCGAATTGATTCGTATATGGTTGTACCTTAC
129 TTGTTTGTTATATGGATATAAGTTGCT-GAATTGATTCATATATGGTTGTACCTTGC
* * *
23012245 TGAAATTAATTTGTACATGGTTATATATTGTCGACATTGAATTGCTTATGAATATAGGATGCTGA
1 TGAAATTAATTCGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCTGA
* * * * * *
23012310 ATTGGATTTCTATTTGATGATACATTTCCAAACTTGATTCGTGTAAGGTTATACATTGTCGAATT
66 ATTGGATTTGTATATGATTATACATTTCCGAACTTGATTCGTGTATGGTTATACATTGCCGAATT
23012375 GTTTGTTATATGGATATAAGTTGCTGAATTGATTCATATATGGTTGTACCTTGC
131 GTTTGTTATATGGATATAAGTTGCTGAATTGATTCATATATGGTTGTACCTTGC
* * *
23012429 TGAAATTAATTTGTACATGGTTATATATTGTCAATATTGAATTGTTTATGAATATAGGATGCCGA
1 TGAAATTAATTCGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCTGA
* *
23012494 ATTGGATTTGTATATGATTATACATTTCTGAACTTGATTCGTGTATGGTTATACATTGCCAAATT
66 ATTGGATTTGTATATGATTATACATTTCCGAACTTGATTCGTGTATGGTTATACATTGCCGAATT
* * *
23012559 GTTTGGTATATGAATATAAGTTGCTGAATTGATTCATATATGGTTGTACATTGC
131 GTTTGTTATATGGATATAAGTTGCTGAATTGATTCATATATGGTTGTACCTTGC
* *
23012613 TAAAAATTAATTCATACATGGTTATATATTGTCGATATTGAATTGTTTATG-A-AT---A-----
1 T-GAAATTAATTCGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCTG
* * **
23012668 AATTGGATTTGTGTATGATTATACATTGCCGAACTTGATTCGTAAATGGTTATACATTGCCGAAT
65 AATTGGATTTGTATATGATTATACATTTCCGAACTTGATTCGTGTATGGTTATACATTGCCGAAT
23012733 TGT
130 TGT
23012736 GGGATATATC
Statistics
Matches: 445, Mismatches: 42, Indels: 17
0.88 0.08 0.03
Matches are distributed among these distances:
175 62 0.14
180 1 0.00
183 77 0.17
184 259 0.58
185 46 0.10
ACGTcount: A:0.29, C:0.09, G:0.19, T:0.42
Consensus pattern (184 bp):
TGAAATTAATTCGTACATGGTTATATATTGTCGATATTGAATTGTTTATGAATATAGGATGCTGA
ATTGGATTTGTATATGATTATACATTTCCGAACTTGATTCGTGTATGGTTATACATTGCCGAATT
GTTTGTTATATGGATATAAGTTGCTGAATTGATTCATATATGGTTGTACCTTGC
Found at i:23030125 original size:15 final size:15
Alignment explanation
Indices: 23030105--23030212 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
23030095 TTTATGGAAA
23030105 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
23030120 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
23030134 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
23030150 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
23030164 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
23030180 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
23030194 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
23030210 ATC
1 ATC
23030213 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:23030134 original size:30 final size:30
Alignment explanation
Indices: 23030098--23030212 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
23030088 ATCCATATTT
*
23030098 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
23030128 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
23030158 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
23030188 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
23030213 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:23034811 original size:15 final size:15
Alignment explanation
Indices: 23034791--23034898 Score: 87
Period size: 15 Copynumber: 7.2 Consensus size: 15
23034781 TTTATGGAAA
23034791 ATCAAAGATATGGGT
1 ATCAAAGATATGGGT
* **
23034806 ATCAAATA-ATGGAA
1 ATCAAAGATATGGGT
23034820 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
23034836 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
23034850 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
* **
23034866 ATCAAATAT-TGGAA
1 ATCAAAGATATGGGT
23034880 AGTCAAAGATATGGGT
1 A-TCAAAGATATGGGT
23034896 ATC
1 ATC
23034899 GAGATATTGG
Statistics
Matches: 69, Mismatches: 18, Indels: 12
0.70 0.18 0.12
Matches are distributed among these distances:
14 13 0.19
15 43 0.62
16 13 0.19
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (15 bp):
ATCAAAGATATGGGT
Found at i:23034820 original size:30 final size:30
Alignment explanation
Indices: 23034784--23034898 Score: 203
Period size: 30 Copynumber: 3.8 Consensus size: 30
23034774 ATCCATATTT
*
23034784 ATGGAAAATCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
23034814 ATGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
23034844 TTGGAAAGTCAAAGATATGGGTATCAAATA
1 ATGGAAAGTCAAAGATATGGGTATCAAATA
*
23034874 TTGGAAAGTCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATATGGGTATC
23034899 GAGATATTGG
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 83 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.25
Consensus pattern (30 bp):
ATGGAAAGTCAAAGATATGGGTATCAAATA
Found at i:23041120 original size:12 final size:12
Alignment explanation
Indices: 23041105--23041144 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
23041095 TTCTTCTTTT
23041105 GGATTTTCTCTG
1 GGATTTTCTCTG
* * *
23041117 GGATATTCTTTT
1 GGATTTTCTCTG
23041129 GGATTTTCTCTG
1 GGATTTTCTCTG
23041141 GGAT
1 GGAT
23041145 ATCATCGATC
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.12, C:0.12, G:0.25, T:0.50
Consensus pattern (12 bp):
GGATTTTCTCTG
Found at i:23041130 original size:24 final size:24
Alignment explanation
Indices: 23041098--23041146 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
23041088 AGTGATATTC
23041098 TTCTTTTGGATTTTCTCTGGGATA
1 TTCTTTTGGATTTTCTCTGGGATA
23041122 TTCTTTTGGATTTTCTCTGGGATA
1 TTCTTTTGGATTTTCTCTGGGATA
23041146 T
1 T
23041147 CATCGATCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.12, C:0.12, G:0.20, T:0.55
Consensus pattern (24 bp):
TTCTTTTGGATTTTCTCTGGGATA
Found at i:23042792 original size:5 final size:5
Alignment explanation
Indices: 23042782--23042813 Score: 55
Period size: 5 Copynumber: 6.2 Consensus size: 5
23042772 TATTAATATT
23042782 TTATA TTATA TTATA TTATA TTATA TATATA T
1 TTATA TTATA TTATA TTATA TTATA T-TATA T
23042814 GACAAAGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 21 0.81
6 5 0.19
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TTATA
Found at i:23042888 original size:45 final size:44
Alignment explanation
Indices: 23042822--23042926 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 44
23042812 ATGACAAAGA
23042822 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACA-AAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAAA-AG-GAAGG
* * *
23042868 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAAAAGGAAGG
23042912 AAGGAAAGAAAGAAA
1 AA-GAAAGAAAGAAA
23042927 GAAAAGAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
44 6 0.11
45 39 0.74
46 8 0.15
ACGTcount: A:0.65, C:0.09, G:0.27, T:0.00
Consensus pattern (44 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAAAAGGAAGG
Found at i:23044393 original size:39 final size:37
Alignment explanation
Indices: 23044343--23044417 Score: 89
Period size: 39 Copynumber: 2.0 Consensus size: 37
23044333 ACTGGGGTAC
* *
23044343 CAACTTTCTTCG-GCTTTGCCGATGAGACACTGGGTGT
1 CAACTTTCTTCGAACTAT-CCGATGAGACACTGGGTGT
*
23044380 CAACTATTGCTTCGAACTATCCGATGAGGCACTGGGTG
1 CAACT-TT-CTTCGAACTATCCGATGAGACACTGGGTG
23044418 CCATTCTGGT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
37 5 0.16
38 2 0.06
39 22 0.69
40 3 0.09
ACGTcount: A:0.20, C:0.24, G:0.27, T:0.29
Consensus pattern (37 bp):
CAACTTTCTTCGAACTATCCGATGAGACACTGGGTGT
Found at i:23044733 original size:25 final size:23
Alignment explanation
Indices: 23044678--23044733 Score: 58
Period size: 25 Copynumber: 2.3 Consensus size: 23
23044668 AATAAAATTT
23044678 ATATTGAATATAAATTAAATGAA
1 ATATTGAATATAAATTAAATGAA
* *
23044701 ATGAATTGTATATGAATTGAAATGAA
1 AT--ATTGAATATAAATT-AAATGAA
23044727 ACTATTG
1 A-TATTG
23044734 GAATGAGATG
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
23 2 0.07
25 16 0.59
26 8 0.30
27 1 0.04
ACGTcount: A:0.48, C:0.02, G:0.14, T:0.36
Consensus pattern (23 bp):
ATATTGAATATAAATTAAATGAA
Found at i:23047638 original size:17 final size:17
Alignment explanation
Indices: 23047618--23047654 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
23047608 AAAAAAAGTA
23047618 TATAACTTTATAATGAT
1 TATAACTTTATAATGAT
23047635 TATAACTTTATAATGAT
1 TATAACTTTATAATGAT
23047652 TAT
1 TAT
23047655 TTAAATTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (17 bp):
TATAACTTTATAATGAT
Found at i:23053395 original size:13 final size:14
Alignment explanation
Indices: 23053374--23053411 Score: 51
Period size: 13 Copynumber: 2.7 Consensus size: 14
23053364 TTCTTTACTA
*
23053374 AAGGAATTAAA-AG
1 AAGGCATTAAAGAG
23053387 AAGGCATTAAAGAG
1 AAGGCATTAAAGAG
23053401 AAGGCAATTAA
1 AAGGC-ATTAA
23053412 GGAAAGCAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 10 0.45
14 7 0.32
15 5 0.23
ACGTcount: A:0.55, C:0.05, G:0.24, T:0.16
Consensus pattern (14 bp):
AAGGCATTAAAGAG
Found at i:23056951 original size:52 final size:52
Alignment explanation
Indices: 23056894--23056999 Score: 176
Period size: 52 Copynumber: 2.0 Consensus size: 52
23056884 AGAATTCAAT
* * *
23056894 ATCACATCAATTAACAATTATGTACTTATTATTTTGTCAATTCTTTTAAAAC
1 ATCACATCAATTAACAATTATGTACTTATTATTTTATCAATTCGTTCAAAAC
*
23056946 ATCACATCAATTAACAATTATTTACTTATTATTTTATCAATTCGTTCAAAAC
1 ATCACATCAATTAACAATTATGTACTTATTATTTTATCAATTCGTTCAAAAC
23056998 AT
1 AT
23057000 ACTCACATTT
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.38, C:0.16, G:0.03, T:0.43
Consensus pattern (52 bp):
ATCACATCAATTAACAATTATGTACTTATTATTTTATCAATTCGTTCAAAAC
Found at i:23058265 original size:13 final size:13
Alignment explanation
Indices: 23058247--23058271 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23058237 TACTGCAACT
23058247 ATGAATTTATTTC
1 ATGAATTTATTTC
23058260 ATGAATTTATTT
1 ATGAATTTATTT
23058272 GATGTTGATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
ATGAATTTATTTC
Found at i:23058462 original size:56 final size:52
Alignment explanation
Indices: 23058376--23058675 Score: 378
Period size: 50 Copynumber: 5.7 Consensus size: 52
23058366 GGTAAAAAGA
23058376 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC-T--GATCATGAGAGG
* *
23058432 TCCCATTTAAGACCATGTTTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC-T--GATCATGAGAGG
*
23058488 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC-GA-GATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTGATCATGAGAGG
* **
23058538 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACC-GA-GGTGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTGATCATGAGAGG
* * **
23058588 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCA-CTGAT-ATGAGAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTGATCATGAG-AGG
*
23058639 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
23058676 TATCATGGTC
Statistics
Matches: 225, Mismatches: 16, Indels: 11
0.89 0.06 0.04
Matches are distributed among these distances:
49 1 0.00
50 96 0.43
51 37 0.16
55 2 0.01
56 89 0.40
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (52 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTGATCATGAGAGG
Found at i:23062311 original size:17 final size:17
Alignment explanation
Indices: 23062289--23062323 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
23062279 TTCTCAAAGA
*
23062289 TTGATCTCTGATCGGGT
1 TTGATCTCCGATCGGGT
23062306 TTGATCTCCGATCGGGT
1 TTGATCTCCGATCGGGT
23062323 T
1 T
23062324 ATTACCAGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.11, C:0.20, G:0.29, T:0.40
Consensus pattern (17 bp):
TTGATCTCCGATCGGGT
Found at i:23066145 original size:50 final size:50
Alignment explanation
Indices: 23066044--23066284 Score: 286
Period size: 50 Copynumber: 4.7 Consensus size: 50
23066034 AAAAAGATCT
* *
23066044 CATGTAATACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--GAGAGGTCC
23066100 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCC
* * * *
23066150 CATGTAAGACCATGTTTGGGACATGGCGTTGGCACAGAGATGAGAGGT-C
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCC
* * * ** *
23066199 CACTGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAATATCT
1 CA-TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAG-AGGTCC
*
23066251 CATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
23066285 TGTTATGATC
Statistics
Matches: 166, Mismatches: 16, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
49 3 0.02
50 90 0.54
51 32 0.19
52 3 0.02
53 3 0.02
55 2 0.01
56 33 0.20
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAGAGGTCC
Found at i:23066223 original size:100 final size:104
Alignment explanation
Indices: 23066037--23066284 Score: 317
Period size: 100 Copynumber: 2.4 Consensus size: 104
23066027 TTTGGGTAAA
* *
23066037 AAGATCTCATGTAATACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCCA
1 AAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC-T-AGATCATGAGAGGTCCCA
*
23066102 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACGAG
63 TGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAG
* * * *
23066144 -AGGTCCCATGTAAGACCATGTTTGGGACATGGCGTTGGCA-C-AGA-GATGAGAGGT-CCACTG
1 AAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATCATGAGAGGTCCCA-TG
* *
23066204 TAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAG
65 TAAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAG
* * *
23066244 AATATCTCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
23066285 TGTTATGATC
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
99 3 0.02
100 48 0.38
101 38 0.30
104 1 0.01
106 35 0.28
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (104 bp):
AAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCTAGATCATGAGAGGTCCCATGT
AAGACCATGTCTGGGACATGGCATGGGCACCGAGACGAG
Found at i:23069001 original size:24 final size:24
Alignment explanation
Indices: 23068970--23069135 Score: 82
Period size: 24 Copynumber: 6.6 Consensus size: 24
23068960 CATATAACAA
23068970 GAAGCTCATAAGAGCCATAATCGG
1 GAAGCTCATAAGAGCCATAATCGG
** *
23068994 GAAGCTCATGCGAGCCATTATCGG
1 GAAGCTCATAAGAGCCATAATCGG
* * * * *
23069018 GTAGCT-TTGGAGAGCCATTAATTGA
1 GAAGCTCAT-AAGAGCCA-TAATCGG
* **
23069043 GAAGCTCATGAGAGAGCCTTTAATTTG
1 GAAGCTCAT-A-AGAGCC-ATAATCGG
* * *
23069070 AAAGCTCATGAAAGAGCCCTTAATCAG
1 GAAGCTCAT--AAGAG-CCATAATCGG
** * *
23069097 GAAGCTCCGAAGAGCTATATATTGG
1 GAAGCTCATAAGAGCCATA-ATCGG
23069122 GAAGCTCATAAGAG
1 GAAGCTCATAAGAG
23069136 TTGCGGTGTG
Statistics
Matches: 106, Mismatches: 28, Indels: 15
0.71 0.19 0.10
Matches are distributed among these distances:
23 1 0.01
24 36 0.34
25 29 0.27
26 2 0.02
27 35 0.33
28 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCATAATCGG
Found at i:23069065 original size:27 final size:26
Alignment explanation
Indices: 23069027--23069093 Score: 89
Period size: 27 Copynumber: 2.5 Consensus size: 26
23069017 GGTAGCTTTG
23069027 GAGAGCCATTAATTGAGAAGCTCATGA
1 GAGAGCCATTAATTGA-AAGCTCATGA
*
23069054 GAGAGCCTTTAATTTGAAAGCTCATGA
1 GAGAGCCATTAA-TTGAAAGCTCATGA
* *
23069081 AAGAGCCCTTAAT
1 GAGAGCCATTAAT
23069094 CAGGAAGCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
26 1 0.03
27 31 0.86
28 4 0.11
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.25
Consensus pattern (26 bp):
GAGAGCCATTAATTGAAAGCTCATGA
Found at i:23069101 original size:27 final size:27
Alignment explanation
Indices: 23069043--23069103 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
23069033 CATTAATTGA
* * **
23069043 GAAGCTCATGAGAGAGCCTTTAATTTG
1 GAAGCTCATGAAAGAGCCCTTAATCAG
*
23069070 AAAGCTCATGAAAGAGCCCTTAATCAG
1 GAAGCTCATGAAAGAGCCCTTAATCAG
23069097 GAAGCTC
1 GAAGCTC
23069104 CGAAGAGCTA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (27 bp):
GAAGCTCATGAAAGAGCCCTTAATCAG
Found at i:23069230 original size:25 final size:24
Alignment explanation
Indices: 23069201--23069288 Score: 88
Period size: 25 Copynumber: 3.6 Consensus size: 24
23069191 GCTATTAACG
23069201 GGAAGCTCATGAGATCCATATATCA
1 GGAAGCTCATGAGAT-CATATATCA
*
23069226 GGAAGCTCGTGAGAGTCATATATCA
1 GGAAGCTCATGAGA-TCATATATCA
** * *
23069251 TAAAACTCAAGAGATTCA-ATATCA
1 GGAAGCTCATGAGA-TCATATATCA
*
23069275 GGATGCTCATGAGA
1 GGAAGCTCATGAGA
23069289 GCTAATAACG
Statistics
Matches: 50, Mismatches: 12, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
24 15 0.30
25 34 0.68
26 1 0.02
ACGTcount: A:0.38, C:0.17, G:0.22, T:0.24
Consensus pattern (24 bp):
GGAAGCTCATGAGATCATATATCA
Found at i:23070838 original size:190 final size:188
Alignment explanation
Indices: 23070509--23070853 Score: 654
Period size: 190 Copynumber: 1.8 Consensus size: 188
23070499 CTCGAACTAA
*
23070509 TATTTCAATTTCACTGAAAACGGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTTA
1 TATTTCAATTTCACTAAAAACGGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTTA
23070574 TAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGTTGATGATTTCTC
66 TAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGTTGATGATTTCTC
23070639 TCATGCTATTTGGGTATATCTCATTATTTTTTGGCATTGGTTGATGATTTCTCTCGTGC
131 TCATGCTATTTGGGTATATCT-ATTATTTTTTGGCATTGGTTGATGATTTCTCTCGTGC
23070698 TATTTCAATTTCACTAAAAACGGGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTT
1 TATTTCAATTTCACTAAAAAC-GGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTT
23070763 ATAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGTTGATGATTTCT
65 ATAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGTTGATGATTTCT
*
23070828 CTCGTGCTATTTGGGTATATCTATTA
130 CTCATGCTATTTGGGTATATCTATTA
23070854 ATTACTAAGG
Statistics
Matches: 153, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
189 24 0.16
190 129 0.84
ACGTcount: A:0.22, C:0.14, G:0.16, T:0.47
Consensus pattern (188 bp):
TATTTCAATTTCACTAAAAACGGCTATTACACACTCGTATTTTTGAGTTACTTCATTTTGATTTA
TAAGGGTTTCATGATACTCTATTTTGTAGATCTCATTATTTTTTGGCATTGGTTGATGATTTCTC
TCATGCTATTTGGGTATATCTATTATTTTTTGGCATTGGTTGATGATTTCTCTCGTGC
Found at i:23075982 original size:17 final size:17
Alignment explanation
Indices: 23075957--23075989 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
23075947 TACTCATTTT
*
23075957 TTAAGTGTGAACACACC
1 TTAAATGTGAACACACC
23075974 TTAAATGTGAACACAC
1 TTAAATGTGAACACAC
23075990 TCCTAAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.24
Consensus pattern (17 bp):
TTAAATGTGAACACACC
Found at i:23082929 original size:36 final size:36
Alignment explanation
Indices: 23082881--23082949 Score: 111
Period size: 36 Copynumber: 1.9 Consensus size: 36
23082871 ACTTGATTAA
* *
23082881 TACAATACTAATATTTTTATAATTCAATTAGAACAT
1 TACAATACTAATATTTTAAAAATTCAATTAGAACAT
*
23082917 TACAATATTAATATTTTAAAAATTCAATTAGAA
1 TACAATACTAATATTTTAAAAATTCAATTAGAA
23082950 GTTTAAAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.48, C:0.09, G:0.03, T:0.41
Consensus pattern (36 bp):
TACAATACTAATATTTTAAAAATTCAATTAGAACAT
Found at i:23092204 original size:16 final size:16
Alignment explanation
Indices: 23092165--23092206 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
23092155 AAAAATATAA
*
23092165 AAATATATTTTAAAAT
1 AAATATATTTAAAAAT
*
23092181 -ATTAATATTTAAAAAT
1 AAAT-ATATTTAAAAAT
23092197 AAATATATTT
1 AAATATATTT
23092207 GCAAAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 4
0.75 0.11 0.14
Matches are distributed among these distances:
15 2 0.10
16 17 0.81
17 2 0.10
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (16 bp):
AAATATATTTAAAAAT
Found at i:23096034 original size:29 final size:29
Alignment explanation
Indices: 23095994--23096069 Score: 125
Period size: 29 Copynumber: 2.6 Consensus size: 29
23095984 CAGTATAACG
23095994 TAAGTGACTAAAACGTAATATTTTAAACA
1 TAAGTGACTAAAACGTAATATTTTAAACA
*
23096023 TAAGTGATTAAAACGTAATATTTTAAACA
1 TAAGTGACTAAAACGTAATATTTTAAACA
* *
23096052 TAAGTGACCAAAATGTAA
1 TAAGTGACTAAAACGTAA
23096070 CTTAAAGTAA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 43 1.00
ACGTcount: A:0.49, C:0.09, G:0.12, T:0.30
Consensus pattern (29 bp):
TAAGTGACTAAAACGTAATATTTTAAACA
Found at i:23096050 original size:14 final size:14
Alignment explanation
Indices: 23096004--23096050 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
23095994 TAAGTGACTA
23096004 AAACGTAATATTTT
1 AAACGTAATATTTT
* *
23096018 AAACATAAGTGA-TTA
1 AAACGTAA-T-ATTTT
23096033 AAACGTAATATTTT
1 AAACGTAATATTTT
23096047 AAAC
1 AAAC
23096051 ATAAGTGACC
Statistics
Matches: 26, Mismatches: 4, Indels: 6
0.72 0.11 0.17
Matches are distributed among these distances:
13 1 0.04
14 14 0.54
15 10 0.38
16 1 0.04
ACGTcount: A:0.49, C:0.09, G:0.09, T:0.34
Consensus pattern (14 bp):
AAACGTAATATTTT
Found at i:23099554 original size:20 final size:18
Alignment explanation
Indices: 23099524--23099575 Score: 63
Period size: 17 Copynumber: 2.9 Consensus size: 18
23099514 AGTTTTATTC
23099524 AATAA-TTAATTATTATA
1 AATAATTTAATTATTATA
*
23099541 ATTATAATTTAATTATTTTA
1 A--ATAATTTAATTATTATA
23099561 AAT-ATTTAATTATTA
1 AATAATTTAATTATTA
23099576 GAACTTCTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
17 12 0.40
18 2 0.07
19 4 0.13
20 12 0.40
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (18 bp):
AATAATTTAATTATTATA
Found at i:23099567 original size:17 final size:17
Alignment explanation
Indices: 23099524--23099575 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 17
23099514 AGTTTTATTC
*
23099524 AATAATTAATTATTATA
1 AATATTTAATTATTATA
*
23099541 ATTATAATTTAATTATTTTA
1 A--AT-ATTTAATTATTATA
23099561 AATATTTAATTATTA
1 AATATTTAATTATTA
23099576 GAACTTCTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 12 0.41
18 2 0.07
19 2 0.07
20 13 0.45
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
AATATTTAATTATTATA
Found at i:23103523 original size:11 final size:11
Alignment explanation
Indices: 23103492--23103580 Score: 72
Period size: 11 Copynumber: 8.0 Consensus size: 11
23103482 CAAATATATC
*
23103492 TAAAATAGTAA
1 TAAAATAATAA
*
23103503 CAAAATTAATAA
1 TAAAA-TAATAA
23103515 TAAAATAATAA
1 TAAAATAATAA
* *
23103526 -ATATATAATAT
1 TA-AAATAATAA
*
23103537 TCAAATAATAA
1 TAAAATAATAA
*
23103548 TAAAATAATAG
1 TAAAATAATAA
* *
23103559 CAATATAATAA
1 TAAAATAATAA
*
23103570 TAAAATGATAA
1 TAAAATAATAA
23103581 CAAAGCAATG
Statistics
Matches: 59, Mismatches: 16, Indels: 6
0.73 0.20 0.07
Matches are distributed among these distances:
10 1 0.02
11 49 0.83
12 9 0.15
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.29
Consensus pattern (11 bp):
TAAAATAATAA
Found at i:23105131 original size:131 final size:133
Alignment explanation
Indices: 23104955--23105210 Score: 383
Period size: 131 Copynumber: 1.9 Consensus size: 133
23104945 TAAAAAACAC
* * * *
23104955 ACTAAATTAATACATTTCAAACATAATGTACTTAAAGAATGTAAAATAATAAAATATGAGAATAA
1 ACTAAATTAATACATTTCAAACATAATCTACTAAAAGAATGTAAAATAATAAAATACGAAAATAA
* *
23105020 TATA-TTTT-TTGAAAGTGATAAAATCT-GGAAAAAAAATACGAACAAATAGCCGAAATAATATT
66 TATATTTTTATTGAAAGTAATAAAATCTAGG-AAAAAAATACGAACAAAGAGCCGAAATAATATT
23105082 TTTT
130 TTTT
* *
23105086 ACTAAATTAATACATTTCAAAGATAATCTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
1 ACTAAATTAATACATTTCAAACATAATCTACTAAAAGAATGTAAAATAATAAAATACGAAAATAA
* * *
23105151 TATATTTTTATTGAAAGTAATAAAATCTAGGGAAAAAATACGAATAAAGGGCCGAAATAA
66 TATATTTTTATTGAAAGTAATAAAATCTAGGAAAAAAATACGAACAAAGAGCCGAAATAA
23105211 GGGTTTTTTT
Statistics
Matches: 111, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
131 63 0.57
132 4 0.04
133 42 0.38
134 2 0.02
ACGTcount: A:0.53, C:0.08, G:0.10, T:0.29
Consensus pattern (133 bp):
ACTAAATTAATACATTTCAAACATAATCTACTAAAAGAATGTAAAATAATAAAATACGAAAATAA
TATATTTTTATTGAAAGTAATAAAATCTAGGAAAAAAATACGAACAAAGAGCCGAAATAATATTT
TTT
Found at i:23105470 original size:155 final size:154
Alignment explanation
Indices: 23105086--23105536 Score: 680
Period size: 156 Copynumber: 2.9 Consensus size: 154
23105076 AATATTTTTT
* *
23105086 ACTAAATTAATACATTTCAAAGATAATCTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
1 ACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
23105151 TATATTTTTATTGAAAGTAATAAAATCTAGGGAAAAAATACGAATAAAGGGCCGAAATAAGGGTT
66 TATATTTTTATTGAAAGTAATAAAATCT-GGGAAAAAATACGAATAAAGGGCCGAAATAAGGGTT
*
23105216 TTTT-TAAAATTTTATTTAAAAAACAC
130 TTTTAT-AAA-TTTATTTAAAAAACAA
* *
23105242 AGTAAATTAATACATTTTAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
1 ACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
* * *
23105307 TATGTTTTTATTGAAAGTAATAAATATC-GGGAAAAAAATACGAACAAATGGCCGAAATAAGGGT
66 TATATTTTTATTGAAAGTAATAAA-ATCTGGG-AAAAAATACGAATAAAGGGCCGAAATAAGGGT
23105371 TTTTTATAAATTTATTTAAAAAACAA
129 TTTTTATAAATTTATTTAAAAAACAA
* * *
23105397 ACTAAATTAATATATTTCAAATATAATGTACTAAAATAATGTAAAATAATAAAATTA-AAAAATA
1 ACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAA-TACGAAAATA
*
23105461 GTATA-TTTT-TT-AAAGGTAATAAAATCTGGGAAAAAATACGAATAAAGGGCCGAAATAAGGGT
65 ATATATTTTTATTGAAA-GTAATAAAATCTGGGAAAAAATACGAATAAAGGGCCGAAATAAGGGT
23105523 TTTTTACTAAATTT
129 TTTTTA-TAAATTT
23105537 GTTTTGAAGT
Statistics
Matches: 271, Mismatches: 17, Indels: 17
0.89 0.06 0.06
Matches are distributed among these distances:
152 42 0.15
153 20 0.07
154 4 0.01
155 77 0.28
156 124 0.46
157 4 0.01
ACGTcount: A:0.51, C:0.07, G:0.11, T:0.31
Consensus pattern (154 bp):
ACTAAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATAAAATACGAAAATAA
TATATTTTTATTGAAAGTAATAAAATCTGGGAAAAAATACGAATAAAGGGCCGAAATAAGGGTTT
TTTATAAATTTATTTAAAAAACAA
Found at i:23105926 original size:15 final size:15
Alignment explanation
Indices: 23105906--23105934 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23105896 ACATACCAGC
23105906 ATAAATTTAATTATT
1 ATAAATTTAATTATT
23105921 ATAAATTTAATTAT
1 ATAAATTTAATTAT
23105935 AATTACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAAATTTAATTATT
Found at i:23106046 original size:15 final size:15
Alignment explanation
Indices: 23106026--23106054 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
23106016 ACATACCTGC
23106026 ATAAATTTAATTATT
1 ATAAATTTAATTATT
23106041 ATAAATTTAATTAT
1 ATAAATTTAATTAT
23106055 AATTACACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
ATAAATTTAATTATT
Found at i:23106099 original size:120 final size:120
Alignment explanation
Indices: 23105886--23106124 Score: 442
Period size: 120 Copynumber: 2.0 Consensus size: 120
23105876 TACTATGGAA
23105886 TTGGTCATTCACATACCAGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
1 TTGGTCATTCACATACCAGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
* *
23105951 TTTACAGCATAAGCTCAATTCCGACCCGATCTTGACGATTGTCTAACATGATAGC
66 TTTACAGCATAAGCTCAATTCCGACCCGATCTTAACGATTGTCCAACATGATAGC
*
23106006 TTGGTCATTCACATACCTGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
1 TTGGTCATTCACATACCAGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
*
23106071 TTTACAGCATAAGCTCAATTCTGACCCGATCTTAACGATTGTCCAACATGATAG
66 TTTACAGCATAAGCTCAATTCCGACCCGATCTTAACGATTGTCCAACATGATAG
23106125 TTTCACTGAG
Statistics
Matches: 115, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 115 1.00
ACGTcount: A:0.37, C:0.19, G:0.10, T:0.35
Consensus pattern (120 bp):
TTGGTCATTCACATACCAGCATAAATTTAATTATTATAAATTTAATTATAATTACACATAACAAT
TTTACAGCATAAGCTCAATTCCGACCCGATCTTAACGATTGTCCAACATGATAGC
Found at i:23109040 original size:37 final size:38
Alignment explanation
Indices: 23108959--23109041 Score: 107
Period size: 37 Copynumber: 2.2 Consensus size: 38
23108949 CTAACACAAT
** *
23108959 AATAATAATAGTTTTTTACTCAAAATAATACTAACTAAC
1 AATAATAATAGGATTTTACT-AAAATAATAATAACTAAC
23108998 AATAATAATTAGGATTTTACT-AAA-AATAATAACTAAC
1 AATAATAA-TAGGATTTTACTAAAATAATAATAACTAAC
23109035 AATAATA
1 AATAATA
23109042 TAATGTAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
37 19 0.47
38 3 0.08
39 8 0.20
40 10 0.25
ACGTcount: A:0.53, C:0.10, G:0.04, T:0.34
Consensus pattern (38 bp):
AATAATAATAGGATTTTACTAAAATAATAATAACTAAC
Found at i:23109073 original size:23 final size:23
Alignment explanation
Indices: 23109028--23109074 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
23109018 TAAAAATAAT
*
23109028 AACTAACAATAATATAATGTAAA
1 AACTAACAATAATATAATCTAAA
*
23109051 AACTAACAATCATACTAA-CTAAA
1 AACTAACAATAATA-TAATCTAAA
23109074 A
1 A
23109075 TAATAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.60, C:0.15, G:0.02, T:0.23
Consensus pattern (23 bp):
AACTAACAATAATATAATCTAAA
Found at i:23121367 original size:15 final size:16
Alignment explanation
Indices: 23121335--23121369 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
23121325 ATCATGTATA
23121335 TATTTTTTAAAATATT
1 TATTTTTTAAAATATT
*
23121351 TATTTTTTAATAT-TT
1 TATTTTTTAAAATATT
23121366 TATT
1 TATT
23121370 GAATTCTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TATTTTTTAAAATATT
Found at i:23125423 original size:36 final size:37
Alignment explanation
Indices: 23125378--23125453 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 37
23125368 TTAGCTACAC
23125378 TTATCACTTATCTGATCAAGTGAAAAAGTGATAAGTG
1 TTATCACTTATCTGATCAAGTGAAAAAGTGATAAGTG
*
23125415 TTAT-ACTTATCTGATCAAGTGACAAAGTGATAAGTG
1 TTATCACTTATCTGATCAAGTGAAAAAGTGATAAGTG
23125451 TTA
1 TTA
23125454 GTCTTAGCTA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
36 34 0.89
37 4 0.11
ACGTcount: A:0.37, C:0.11, G:0.18, T:0.34
Consensus pattern (37 bp):
TTATCACTTATCTGATCAAGTGAAAAAGTGATAAGTG
Found at i:23125496 original size:89 final size:89
Alignment explanation
Indices: 23125335--23125539 Score: 217
Period size: 89 Copynumber: 2.3 Consensus size: 89
23125325 TTTGAGTACT
* **
23125335 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCACTTATCTGATCAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTAT-ACTGATCTGAGAAAGTG
* *
23125400 AAAAAGTGATAAG-T-GTTATACTTA
65 AAAAAGTGAT-AGCTAGCTACACTTA
*
23125424 TCTGATCAAGTGACAAAGTGATAAGTGTTAG-TCTTAGCTACACTTAT-CTGATCAAGTGAGAAA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCT-TTAGCTACACTTATACTGATC---TGAGAAA
* *
23125487 GTG-ATAAGTGGTAGCCTAGCTACACTTA
62 GTGAAAAAGTGATAG-CTAGCTACACTTA
*
23125515 TCTGATC-AGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
23125540 ATCATACGTA
Statistics
Matches: 100, Mismatches: 9, Indels: 14
0.81 0.07 0.11
Matches are distributed among these distances:
87 5 0.05
88 3 0.03
89 63 0.63
90 14 0.14
91 15 0.15
ACGTcount: A:0.34, C:0.14, G:0.22, T:0.30
Consensus pattern (89 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATACTGATCTGAGAAAGTGA
AAAAGTGATAGCTAGCTACACTTA
Found at i:23136853 original size:6 final size:6
Alignment explanation
Indices: 23136842--23136892 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
23136832 AATATGTGTA
23136842 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
1 TATATG TATATG TATATG TATATG TATATG TATATG TATATG TATATG
23136890 TAT
1 TAT
23136893 CTGGAGATGA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.33, C:0.00, G:0.16, T:0.51
Consensus pattern (6 bp):
TATATG
Found at i:23137642 original size:27 final size:27
Alignment explanation
Indices: 23137590--23137642 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
23137580 TTAAAATACT
* * *
23137590 AAGTAATGTATTATATATTTATTTTAA
1 AAGTAATATATAATATATTTAATTTAA
23137617 AAGTAATATATAAT-TATTTAAATTTA
1 AAGTAATATATAATATATTT-AATTTA
23137643 TTTATTATAT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.45, C:0.00, G:0.06, T:0.49
Consensus pattern (27 bp):
AAGTAATATATAATATATTTAATTTAA
Found at i:23139079 original size:88 final size:84
Alignment explanation
Indices: 23138923--23139195 Score: 323
Period size: 88 Copynumber: 3.1 Consensus size: 84
23138913 TTAAGGGTGT
* * *
23138923 AAAAA-GCCCTCAAACTTTTTCAAAAAAAGCAATTAAGTTCCTACCTTTTTTTGCACACAATTAG
1 AAAAATGCCCTCAAACTTTTTCAAAAAAAGCAATTAAG-CCCT--TTTTTTTTGCACTCAATT-G
*
23138987 GTACTTGAACTTTCAAGATGCATA
62 GTACTTGAACTTTCAA-ATGCATC
* * *
23139011 AAAAATGCCGTCAAACTTTTTCAAAAATAGTAATTAAGCCCCTTTTTATTTTGCACTCAATTGCG
1 AAAAATGCCCTCAAACTTTTTCAAAAAAAGCAATTAAG-CCCTTTTT-TTTTGCACTCAATTG-G
23139076 TACTTGAACTTTCAAAATGCATC
63 TACTTGAACTTTC-AAATGCATC
* * *
23139099 AAAAAGGCCCTCAAACTTTTTCAAAAAAAAGCAATTAAGCTCTTTTTTTTGGCACTCAATTGGGT
1 AAAAATGCCCTCAAACTTTTTC-AAAAAAAGCAATTAAGCCCTTTTTTTTTGCACTCAATT-GGT
* **
23139164 ATTTGAACGGTCAAATGCATC
64 ACTTGAACTTTCAAATGCATC
23139185 AAAAATGCCCT
1 AAAAATGCCCT
23139196 TTGACCATTA
Statistics
Matches: 161, Mismatches: 18, Indels: 14
0.83 0.09 0.07
Matches are distributed among these distances:
86 19 0.12
87 28 0.17
88 66 0.41
89 48 0.30
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.32
Consensus pattern (84 bp):
AAAAATGCCCTCAAACTTTTTCAAAAAAAGCAATTAAGCCCTTTTTTTTTGCACTCAATTGGTAC
TTGAACTTTCAAATGCATC
Found at i:23139345 original size:27 final size:26
Alignment explanation
Indices: 23139294--23139360 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 26
23139284 CATGTGGCAA
23139294 AAAAATTATAAAAAATAAAAATTAAT
1 AAAAATTATAAAAAATAAAAATTAAT
* **
23139320 AAAAGTTATAAAAAATTAAATTTTAAT
1 AAAAATTATAAAAAA-TAAAAATTAAT
23139347 AGAAAATATATAAA
1 A-AAAAT-TATAAA
23139361 TTTTATTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 14 0.41
27 10 0.29
28 4 0.12
29 6 0.18
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (26 bp):
AAAAATTATAAAAAATAAAAATTAAT
Found at i:23139405 original size:20 final size:19
Alignment explanation
Indices: 23139382--23139463 Score: 74
Period size: 20 Copynumber: 4.1 Consensus size: 19
23139372 ATTAGAAAAT
23139382 AAAATTATTAAAATCATAAA
1 AAAATTA-TAAAATCATAAA
** *
23139402 AAAATTATAAAAAAATGTAA
1 AAAATTATAAAATCAT-AAA
** *
23139422 AATTTTATAAAAATCATTAA
1 AAAATTAT-AAAATCATAAA
23139442 AAAATTATAAAATGCATAAA
1 AAAATTATAAAAT-CATAAA
23139462 AA
1 AA
23139464 GGACCTTTAA
Statistics
Matches: 49, Mismatches: 10, Indels: 6
0.75 0.15 0.09
Matches are distributed among these distances:
19 12 0.24
20 31 0.63
21 6 0.12
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAATTATAAAATCATAAA
Found at i:23139424 original size:29 final size:30
Alignment explanation
Indices: 23139390--23139463 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
23139380 ATAAAATTAT
* *
23139390 TAAAATCATAAAAAAATTA-TAAAAAAATG
1 TAAAATCATAAAAAAATCATTAAAAAAATA
** * *
23139419 TAAAATTTTATAAAAATCATTAAAAAATTA
1 TAAAATCATAAAAAAATCATTAAAAAAATA
23139449 TAAAATGCATAAAAA
1 TAAAAT-CATAAAAA
23139464 GGACCTTTAA
Statistics
Matches: 34, Mismatches: 9, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
29 15 0.44
30 14 0.41
31 5 0.15
ACGTcount: A:0.65, C:0.04, G:0.03, T:0.28
Consensus pattern (30 bp):
TAAAATCATAAAAAAATCATTAAAAAAATA
Found at i:23139715 original size:28 final size:27
Alignment explanation
Indices: 23139679--23139774 Score: 83
Period size: 27 Copynumber: 3.6 Consensus size: 27
23139669 TCTTTACTTT
23139679 TTTAT-ATTTTTTTACGACTTTATA-AAA
1 TTTATAATTTTTTTA-GA-TTTATATAAA
* * *
23139706 TTTATAATTTTTTTATATTTCTATATA
1 TTTATAATTTTTTTAGATTTATATAAA
23139733 TTTATAATTTTTTTTATGATTT-TAT-AA
1 TTTATAA-TTTTTTTA-GATTTATATAAA
* *
23139760 TTTTTAATATTTTTA
1 TTTATAATTTTTTTA
23139775 TAGTTTTTTA
Statistics
Matches: 58, Mismatches: 7, Indels: 9
0.78 0.09 0.12
Matches are distributed among these distances:
26 12 0.21
27 22 0.38
28 20 0.34
29 4 0.07
ACGTcount: A:0.30, C:0.03, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTATAATTTTTTTAGATTTATATAAA
Found at i:23139735 original size:27 final size:25
Alignment explanation
Indices: 23139704--23139781 Score: 93
Period size: 27 Copynumber: 2.9 Consensus size: 25
23139694 GACTTTATAA
23139704 AATTTATAATTTTTTTATATTTCTAT
1 AATTTATAATTTTTTTATATTT-TAT
23139730 ATATTTATAATTTTTTTTATGATTTTAT
1 A-ATTTATAA-TTTTTTTAT-ATTTTAT
* *
23139758 AATTTTTAATATTTTTATAGTTTT
1 AATTTATAATTTTTTTATA-TTTT
23139782 TTATTAAAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
25 1 0.02
26 13 0.28
27 15 0.33
28 13 0.28
29 4 0.09
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (25 bp):
AATTTATAATTTTTTTATATTTTAT
Found at i:23141515 original size:21 final size:21
Alignment explanation
Indices: 23141491--23141532 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
23141481 AAAAAAATTA
*
23141491 ATTAGTTTTATTATCATTATT
1 ATTACTTTTATTATCATTATT
* *
23141512 ATTACTTTTATTTTTATTATT
1 ATTACTTTTATTATCATTATT
23141533 TGCCTTATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (21 bp):
ATTACTTTTATTATCATTATT
Found at i:23154588 original size:44 final size:44
Alignment explanation
Indices: 23154363--23155126 Score: 245
Period size: 44 Copynumber: 17.8 Consensus size: 44
23154353 AGAATCTCAA
* ** *
23154363 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA-
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAATAG
* * * *
23154407 ATCCTATATTCCTGAGATTACAGTGGAGCGGATTAAAATAA-ATG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATA-G
** * * ** ** *
23154451 ATCTTATCTCTTTGA-AGTGACAGTAGAGTGGA-T--CGT-GTCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAT-AG
* * ** *
23154492 GTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA-
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAATAG
* * * *
23154536 ATCCTATCTCCCTGAGATTACAGTAGAGCGGATTAAAATAAAAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATAG
* ** ** **
23154580 ATCTTATCT--CTGA-AGTGACAGTAAAGTGGA-T--CGT-ATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAT-AG
* * * * ** *
23154619 GTTTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCTAGTA-
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAATAG
* * *
23154663 ATCCTATCTCCCTGATATTACAGTGGAGCGGATTAAAATAA-AGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATA-G
* * * ** ** *
23154707 ATCTTATCTCTCTGA-AGTGACAGTAGAGTGGA-T--CGTATTAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAATAG
* * * * * ** *
23154748 GTCTTATCTTCTTGAGATTACAGCGGAGTAGATTGAAGCTAGTA-
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAATAG
* *
23154792 ATCCTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAAAAG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATAG
* * * * **
23154836 ATCTTATCTCTCTGA-AGTTATAGTAGAGTAGA-T--CGT-ATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAT-AG
* * ** *
23154877 GTCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTATTA-
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAATAG
* * *
23154921 ATCCTATCTCCCTGAGATTACAGTGTAGCGGATTAAAATAA-AGG
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATA-G
* * * * **
23154965 ATCTTATCTCTCT-AAAGTTACAGTAGAGTAGA-T--CGT-ATCAG
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTAAAATAAT-AG
* * * ** *
23155006 GTCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGTTAGTA-
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATT-AAAATAATAG
* *
23155050 AT-TCTATCTCCCTGAGATTACAGTGGAGC-GAATTAAAATAAAAA
1 ATCT-TATCTCCCTGAGATTACAGTGGAGCAG-ATTAAAATAATAG
* * *
23155094 ATCTTATCTCTCTGA-AGTTATAGTGGAGTAGAT
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGAT
23155127 CGTATCAAGT
Statistics
Matches: 515, Mismatches: 148, Indels: 114
0.66 0.19 0.15
Matches are distributed among these distances:
38 1 0.00
39 10 0.02
40 2 0.00
41 116 0.23
42 33 0.06
43 39 0.08
44 295 0.57
45 14 0.03
46 5 0.01
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTAAAATAATAG
Found at i:23155143 original size:85 final size:86
Alignment explanation
Indices: 23154493--23155173 Score: 262
Period size: 85 Copynumber: 7.9 Consensus size: 86
23154483 TCGTGTCAGG
* * *
23154493 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT-AA-TCCTATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATT--AG-TA-TCAAGTCTTATCTCCCTGAGATTA
* * *
23154556 CAGTAGAGCGGATTAAAATAAAAGA
62 CAGTGGAGCAGATTAAAATAAAAAA
* ** * * * * *
23154581 TCTTATCT--CTGA-AGTGACAGTAAAGTGGA-TCGTATCAGGTTTTATCTCCCTGAGATTATAG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTAGTATCAAGTCTTATCTCCCTGAGATTACAG
* ** **
23154642 CGGAGCAGATTGAAGCT-AGTAA
65 TGGAGCAGATT-AAAATAAAAAA
* * ** ** * * *
23154664 TCCTATCTCCCTGATATTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGA-AGTGAC
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATTAGTATCAA-G-TCTTATCTCCCTGAGA-TTAC
* ** ** ** **
23154728 AGTAGAGTGGA-T--CGTATTAGG
63 AGTGGAGCAGATTAAAATAAAAAA
* * * *
23154749 TCTTATCTTCTTGAGATTACAGCGGAGTAGATTGAAGCTAGT-AA-TCCTATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATT--AG-TA-TCAAGTCTTATCTCCCTGAGATTA
*
23154812 CAGTGGAGCAGATTAAAATAAAAGA
62 CAGTGGAGCAGATTAAAATAAAAAA
* * * * *
23154837 TCTTATCTCTCTGA-AGTTATAGTAGAGTAGA-TCGTATCAGGTCTTATCTCCCTGAGATTACAG
1 TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTAGTATCAAGTCTTATCTCCCTGAGATTACAG
* ** **
23154900 CGGAGCAGATTGAAGCT-ATTAA
65 TGGAGCAGATT-AAAATAAAAAA
* * ** ** * * *
23154922 TCCTATCTCCCTGAGATTACAGTGTAGCGGATTAAAATAAAGGATCTTATCTCTCT-AAAGTTAC
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATTAGTATCAA-G-TCTTATCTCCCTGAGA-TTAC
* * ** ** **
23154986 AGTAGAGTAGA-T--CGTATCAGG
63 AGTGGAGCAGATTAAAATAAAAAA
* *
23155007 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGTTAGT-AATTC-TATCTCCCTGAGATTA
1 TCTTATCTCCCTGAGATTACAGTGGAGTAGATT--AG-TA-TCAAGTCTTATCTCCCTGAGATTA
23155070 CAGTGGAGC-GAATTAAAATAAAAAA
62 CAGTGGAGCAG-ATTAAAATAAAAAA
* * * *
23155095 TCTTATCTCTCTGA-AGTTATAGTGGAGTAGA-TCGTATCAAGTCTTATCTCCCTGACG-TTGCA
1 TCTTATCTCCCTGAGA-TTACAGTGGAGTAGATTAGTATCAAGTCTTATCTCCCTGA-GATTACA
* *
23155157 GTGGAGTAGACTAAAAT
64 GTGGAGCAGATTAAAAT
23155174 CACGAATCTC
Statistics
Matches: 420, Mismatches: 129, Indels: 91
0.66 0.20 0.14
Matches are distributed among these distances:
81 1 0.00
82 3 0.01
83 39 0.09
84 15 0.04
85 198 0.47
86 35 0.08
87 13 0.03
88 114 0.27
89 2 0.00
ACGTcount: A:0.31, C:0.17, G:0.21, T:0.31
Consensus pattern (86 bp):
TCTTATCTCCCTGAGATTACAGTGGAGTAGATTAGTATCAAGTCTTATCTCCCTGAGATTACAGT
GGAGCAGATTAAAATAAAAAA
Found at i:23155166 original size:129 final size:129
Alignment explanation
Indices: 23154364--23155149 Score: 1243
Period size: 129 Copynumber: 6.1 Consensus size: 129
23154354 GAATCTCAAA
* *
23154364 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATATTCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * * *
23154429 GTGGAGCGGATTAAAATAAATGATCTTATCTCTTTGAAGTGACAGTAGAGTGGATCGTGTCAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTAGATCGTATCAGG
23154493 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * *
23154558 GTAGAGCGGATTAAAATAAAAGATCTTA--TCTCTGAAGTGACAGTAAAGTGGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTAGATCGTATCAGG
* * *
23154620 TTTTATCTCCCTGAGATTATAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGATATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * *
23154685 GTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTGACAGTAGAGTGGATCGTATTAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTAGATCGTATCAGG
* * *
23154749 TCTTATCTTCTTGAGATTACAGCGGAGTAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * *
23154814 GTGGAGCAGATTAAAATAAAAGATCTTATCTCTCTGAAGTTATAGTAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTAGATCGTATCAGG
*
23154878 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTATTAATCCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * * *
23154943 GTGTAGCGGATTAAAATAAAGGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGTATCAGG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTAGATCGTATCAGG
* * *
23155007 TCTTATCTCCCTGAGATTACAGCGGAGTAGATTGAAGTTAGTAATTCTATCTCCCTGAGATTACA
1 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
* * * * * *
23155072 GTGGAGCGAATTAAAATAAAAAATCTTATCTCTCTGAAGTTATAGTGGAGTAGATCGTATCAAG
66 GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTAGATCGTATCAGG
23155136 TCTTATCTCCCTGA
1 TCTTATCTCCCTGA
23155150 CGTTGCAGTG
Statistics
Matches: 608, Mismatches: 47, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
127 119 0.20
129 489 0.80
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31
Consensus pattern (129 bp):
TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACA
GTGGAGCGGATTAAAATAAAAGATCTTATCTCTCTGAAGTGACAGTAGAGTAGATCGTATCAGG
Found at i:23158856 original size:30 final size:29
Alignment explanation
Indices: 23158793--23158856 Score: 74
Period size: 30 Copynumber: 2.2 Consensus size: 29
23158783 TGCGTATATC
*
23158793 TTTATAATTTTAAAAGATTAAATTAAAAA
1 TTTATAATTTTAAAAGATTAAAATAAAAA
* * * *
23158822 TTTATCAATTTTAAAGGGTTAAAATATAAT
1 TTTAT-AATTTTAAAAGATTAAAATAAAAA
23158852 TTTAT
1 TTTAT
23158857 TTTTATTAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 5 0.17
30 24 0.83
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (29 bp):
TTTATAATTTTAAAAGATTAAAATAAAAA
Found at i:23159496 original size:29 final size:30
Alignment explanation
Indices: 23159432--23159499 Score: 93
Period size: 31 Copynumber: 2.3 Consensus size: 30
23159422 AATATTAAAA
23159432 TTATACATGAATTTTGATTCAATGTGTAATG
1 TTATACATGAATTTTGATT-AATGTGTAATG
* * *
23159463 TTATACATGAATTTTGATT-TTGTGTGATT
1 TTATACATGAATTTTGATTAATGTGTAATG
23159492 TTATACAT
1 TTATACAT
23159500 AAAAATTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
29 15 0.44
31 19 0.56
ACGTcount: A:0.29, C:0.06, G:0.15, T:0.50
Consensus pattern (30 bp):
TTATACATGAATTTTGATTAATGTGTAATG
Found at i:23161318 original size:21 final size:20
Alignment explanation
Indices: 23161277--23161320 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
23161267 AGGCCTGGCT
*
23161277 CGGGAAAAAATTCATAGGCC
1 CGGGAAAAAATTCATAAGCC
*
23161297 CGGGAAAAAATTTTATAAGCC
1 CGGGAAAAAA-TTCATAAGCC
23161318 CGG
1 CGG
23161321 CCCGGCCCGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.39, C:0.18, G:0.25, T:0.18
Consensus pattern (20 bp):
CGGGAAAAAATTCATAAGCC
Found at i:23161434 original size:12 final size:11
Alignment explanation
Indices: 23161417--23161446 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
23161407 ATTAAAAAAA
23161417 TTAAAAGTATTT
1 TTAAAA-TATTT
23161429 TTAAAATATTT
1 TTAAAATATTT
23161440 TTAAAAT
1 TTAAAAT
23161447 TAAAAAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (11 bp):
TTAAAATATTT
Found at i:23161486 original size:79 final size:81
Alignment explanation
Indices: 23161354--23161501 Score: 205
Period size: 79 Copynumber: 1.9 Consensus size: 81
23161344 ACCAAAAATT
*
23161354 TATTTTAAAAATTAAAACAAAAATAAAAAAAATTATTTTAAAAATATTTAAAAA-TTAAAAAAAT
1 TATTTTAAAAATTAAAACAAAAATAAAAAAAAGTATTTTAAAAATATTTAAAAATTTAAAAAAA-
23161418 TAAAAGTATTTTTAAAA
65 TAAAAGTATTTTTAAAA
* * * *
23161435 TATTTTTAAAATT-AAA-AAAATTTAAAAAAAGTA-TTTAAAAAGTATTTAAAAATTTTAAAAAA
1 TATTTTAAAAATTAAAACAAAAATAAAAAAAAGTATTTTAAAAA-TATTTAAAAATTTAAAAAAA
23161497 TAAAA
65 TAAAA
23161502 TAAAAATAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
78 8 0.13
79 29 0.48
80 11 0.18
81 12 0.20
ACGTcount: A:0.62, C:0.01, G:0.02, T:0.35
Consensus pattern (81 bp):
TATTTTAAAAATTAAAACAAAAATAAAAAAAAGTATTTTAAAAATATTTAAAAATTTAAAAAAAT
AAAAGTATTTTTAAAA
Found at i:23184503 original size:24 final size:24
Alignment explanation
Indices: 23184438--23184509 Score: 117
Period size: 24 Copynumber: 3.0 Consensus size: 24
23184428 TCGTTCTGTG
* *
23184438 GCAAAGAATGAATTGACAGTAAAT
1 GCAAAGGATGAATTGACGGTAAAT
23184462 GCAAAGGATGAATTGACGGTAAAT
1 GCAAAGGATGAATTGACGGTAAAT
*
23184486 GCAAAGGATGAATTGACGGCAAAT
1 GCAAAGGATGAATTGACGGTAAAT
23184510 TACCCAAGTA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.44, C:0.10, G:0.26, T:0.19
Consensus pattern (24 bp):
GCAAAGGATGAATTGACGGTAAAT
Found at i:23184611 original size:21 final size:21
Alignment explanation
Indices: 23184586--23184649 Score: 67
Period size: 21 Copynumber: 3.0 Consensus size: 21
23184576 TGAGCTTCTA
23184586 TTAACTCATATGAGTTTCCGT
1 TTAACTCATATGAGTTTCCGT
* *
23184607 TTAAC-CCTAATGGGTTTCCGT
1 TTAACTCAT-ATGAGTTTCCGT
* * *
23184628 TTAGCTCTTATGAGCTTCCGT
1 TTAACTCATATGAGTTTCCGT
23184649 T
1 T
23184650 CAACCTTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
20 2 0.06
21 31 0.89
22 2 0.06
ACGTcount: A:0.19, C:0.22, G:0.17, T:0.42
Consensus pattern (21 bp):
TTAACTCATATGAGTTTCCGT
Found at i:23184641 original size:42 final size:42
Alignment explanation
Indices: 23184594--23184687 Score: 107
Period size: 42 Copynumber: 2.2 Consensus size: 42
23184584 TATTAACTCA
* * ** *
23184594 TATGAGTTTCCGTTTAACCCTAATGGGTTTCCGTTTAGCTCT
1 TATGAGCTTCCGTTCAACCCTAATAAGTTTCCGTTTAGCACT
* * *
23184636 TATGAGCTTCCGTTCAACCTTTATAAGTTTCTGTTTAGCACT
1 TATGAGCTTCCGTTCAACCCTAATAAGTTTCCGTTTAGCACT
*
23184678 TATGTGCTTC
1 TATGAGCTTC
23184688 TGTTTAGCCT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.18, C:0.21, G:0.17, T:0.44
Consensus pattern (42 bp):
TATGAGCTTCCGTTCAACCCTAATAAGTTTCCGTTTAGCACT
Found at i:23187021 original size:19 final size:20
Alignment explanation
Indices: 23186986--23187036 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
23186976 AAAATTTTTT
*
23186986 TAATAAAC-TAAAGAATATA
1 TAATAAACTTAAAGAATAAA
23187005 TAATAAACTTAAA-AATAAA
1 TAATAAACTTAAAGAATAAA
* *
23187024 AAAAAAACTTAAA
1 TAATAAACTTAAA
23187037 CCCCTAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 24 0.86
20 4 0.14
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.24
Consensus pattern (20 bp):
TAATAAACTTAAAGAATAAA
Found at i:23191216 original size:17 final size:18
Alignment explanation
Indices: 23191185--23191218 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
23191175 AAGCTATTAG
*
23191185 AAAATTAAAATAAAAAAT
1 AAAATTAAAACAAAAAAT
23191203 AAAA-TAAAACAAAAAA
1 AAAATTAAAACAAAAAA
23191219 GCTACCGAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (18 bp):
AAAATTAAAACAAAAAAT
Found at i:23204881 original size:90 final size:88
Alignment explanation
Indices: 23204780--23204952 Score: 215
Period size: 89 Copynumber: 1.9 Consensus size: 88
23204770 GAAAATAAAT
* ** * *
23204780 TTTTTTACACTCAATTTAGGTACTTAAGTTTTTAAAATA-TATCAAAAAGACCCTCAAA-TCTTT
1 TTTTTTACACTCAATTGA-GTACTTAAACTTTCAAAA-AGTATAAAAAAGACCCTCAAACT-TTT
23204843 TCAAAAAAAAGCAATCAAGCCCCTTAC
63 TCAAAAAAAA-CAATCAAGCCCCTTAC
* *
23204870 TTTTTTGCACTCAATTGAGTACTTAAACTTTCAAAAAGTATAAAAAAGATCCTCAAACTTTTTCA
1 TTTTTTACACTCAATTGAGTACTTAAACTTTCAAAAAGTATAAAAAAGACCCTCAAACTTTTTCA
* *
23204935 TAAAAAACAATTAAGCCC
66 AAAAAAACAATCAAGCCC
23204953 ATGCATTTAT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
88 11 0.15
89 44 0.61
90 17 0.24
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.33
Consensus pattern (88 bp):
TTTTTTACACTCAATTGAGTACTTAAACTTTCAAAAAGTATAAAAAAGACCCTCAAACTTTTTCA
AAAAAAACAATCAAGCCCCTTAC
Done.