Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 69 of 199
Found at i:25823136 original size:18 final size:18
Alignment explanation
Indices: 25823103--25823137 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
25823093 CTTATTTTTG
* *
25823103 CGAAAGCTACGTCTATTT
1 CGAAAGCTAAGACTATTT
25823121 CGAAAGCTAAGACTATT
1 CGAAAGCTAAGACTATT
25823138 CAATCTGGCC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (18 bp):
CGAAAGCTAAGACTATTT
Found at i:25824326 original size:18 final size:18
Alignment explanation
Indices: 25824285--25824324 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
25824275 TTTTCTCTCC
* *
25824285 AAAATTAATCTATTTTCT
1 AAAATTAACCTATTTCCT
25824303 AAAATTAACCTATTTCCCT
1 AAAATTAACCTATTT-CCT
25824322 AAA
1 AAA
25824325 TTTAGAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 14 0.74
19 5 0.26
ACGTcount: A:0.42, C:0.17, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATTAACCTATTTCCT
Found at i:25827786 original size:17 final size:17
Alignment explanation
Indices: 25827760--25827794 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
25827750 TTAAAAAACA
*
25827760 TTTTTCAAAAATATATT
1 TTTTTCAAAAATACATT
*
25827777 TTTTTTAAAAATACATT
1 TTTTTCAAAAATACATT
25827794 T
1 T
25827795 GAAAAGTGTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.06, G:0.00, T:0.54
Consensus pattern (17 bp):
TTTTTCAAAAATACATT
Found at i:25828037 original size:26 final size:27
Alignment explanation
Indices: 25827983--25828039 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 27
25827973 TAAGTAATTA
* *
25827983 ATATAAATTATTTTTAAAATTATTGAT
1 ATATAAAATATTTTTAAAATTATTAAT
25828010 ATATAAAATA-TTTTAAAATT-TTAA-
1 ATATAAAATATTTTTAAAATTATTAAT
25828034 ATATAA
1 ATATAA
25828040 TAGTAAATCA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 6 0.21
25 3 0.11
26 10 0.36
27 9 0.32
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (27 bp):
ATATAAAATATTTTTAAAATTATTAAT
Found at i:25838574 original size:53 final size:54
Alignment explanation
Indices: 25838472--25838578 Score: 153
Period size: 53 Copynumber: 2.0 Consensus size: 54
25838462 CCTTAAATGC
* **
25838472 TTACGAATTGATTAAATAATTTTTATTAAATTATTATAATAAATAATGTAAAAT
1 TTACGAATTGATCAAATAATTTTTATTAAATTACCATAATAAATAATGTAAAAT
* * *
25838526 TTACGAATTGATCAAATAA-TTTTATTTAATTACCATAATAATTCATGTAAAAT
1 TTACGAATTGATCAAATAATTTTTATTAAATTACCATAATAAATAATGTAAAAT
25838579 ATGCACTGTA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 29 0.62
54 18 0.38
ACGTcount: A:0.46, C:0.06, G:0.06, T:0.43
Consensus pattern (54 bp):
TTACGAATTGATCAAATAATTTTTATTAAATTACCATAATAAATAATGTAAAAT
Found at i:25838957 original size:23 final size:23
Alignment explanation
Indices: 25838921--25838967 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
25838911 AAAAGAATAC
* *
25838921 AAAAATTATTAAAAATTACAAAA
1 AAAAACTATAAAAAATTACAAAA
* *
25838944 AAAAACTATAAAAATTTACTAAA
1 AAAAACTATAAAAAATTACAAAA
25838967 A
1 A
25838968 TTTCAAATAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (23 bp):
AAAAACTATAAAAAATTACAAAA
Found at i:25839747 original size:3 final size:3
Alignment explanation
Indices: 25839741--25839766 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
25839731 GGAAAAAAAT
25839741 AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG AAG AAG AAG AAG AAG AAG AAG AA
25839767 CTAATCATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:25849737 original size:37 final size:38
Alignment explanation
Indices: 25849684--25849776 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 38
25849674 AGTTCCACAT
* * * **
25849684 TGTGGTGTGTAAGGTGGATGATCCAATTATGGTTC-TA
1 TGTGGTGTGCAGGGTGGATGAGCCAATTATGGCCCTTA
* ** *
25849721 TGTGGTGTGCAGGGTGGATGGGCCTTTTGTGGCCCTTA
1 TGTGGTGTGCAGGGTGGATGAGCCAATTATGGCCCTTA
25849759 TGTGGTGTGCAGGGTGGA
1 TGTGGTGTGCAGGGTGGA
25849777 CGAAGCGGTG
Statistics
Matches: 46, Mismatches: 9, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
37 26 0.57
38 20 0.43
ACGTcount: A:0.14, C:0.11, G:0.41, T:0.34
Consensus pattern (38 bp):
TGTGGTGTGCAGGGTGGATGAGCCAATTATGGCCCTTA
Found at i:25852001 original size:3 final size:3
Alignment explanation
Indices: 25851993--25852019 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
25851983 ATAAATTTCA
25851993 TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT
25852020 AATTGCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:25852180 original size:13 final size:13
Alignment explanation
Indices: 25852159--25852188 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
25852149 ATTTTTTAAA
*
25852159 ATATTTATTTTAT
1 ATATGTATTTTAT
25852172 ATATGTATTTTAT
1 ATATGTATTTTAT
25852185 ATAT
1 ATAT
25852189 TATGATTCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.63
Consensus pattern (13 bp):
ATATGTATTTTAT
Found at i:25852864 original size:110 final size:110
Alignment explanation
Indices: 25852666--25853100 Score: 637
Period size: 110 Copynumber: 4.0 Consensus size: 110
25852656 TCAAAAAAGG
* *
25852666 AAAATATTTCTAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAATATGCCCTAAGGTGCT
1 AAAA-ATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
*
25852731 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTTTT
65 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTT
* *
25852777 TAAAATTTCAAAATAAGGAAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
* *
25852842 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTTAATATCCTTCTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTT
*
25852887 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTTGAGAAAACATGCCCTAAGGTGCT-
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
* * ** *
25852951 GGTGTCGATTTTTCTCATTCAACCAAATAGCTAAATA-CCCCTTC
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTT
* **
25852995 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACATGCTTTAAGGTGCTG
1 AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
* * * * *
25853059 GGTTTCGA--TTTCTCGTTTATCCAAATTGCCAAATATCCTTTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT
25853101 GAATTTTAAT
Statistics
Matches: 295, Mismatches: 27, Indels: 8
0.89 0.08 0.02
Matches are distributed among these distances:
106 22 0.07
107 20 0.07
108 53 0.18
109 34 0.12
110 163 0.55
111 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.35
Consensus pattern (110 bp):
AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTT
Found at i:25855888 original size:63 final size:63
Alignment explanation
Indices: 25855821--25856016 Score: 220
Period size: 62 Copynumber: 3.1 Consensus size: 63
25855811 GAGGGACTAG
25855821 TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAAT
1 TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAAT
* * ** ** * **** * * *
25855884 TAAAATTTT-TAAATTTTTGTGAGATT-AATGAGAATTTTCAAATATTTTAAGTGA-GCT-TAAT
1 TAAAATTTTAAAAAATTTTAAGAG-TTAAATGAG-ATTTAAAAAAAAAAAAATTGAGGGTCCAAT
25855945 TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAAT
1 TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAAT
25856008 TAAAATTTT
1 TAAAATTTT
25856017 TAAATTTTTG
Statistics
Matches: 99, Mismatches: 28, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
61 27 0.27
62 36 0.36
63 36 0.36
ACGTcount: A:0.48, C:0.03, G:0.12, T:0.36
Consensus pattern (63 bp):
TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAAT
Found at i:25855914 original size:62 final size:62
Alignment explanation
Indices: 25855848--25856040 Score: 212
Period size: 61 Copynumber: 3.1 Consensus size: 62
25855838 TTAAGAGTTA
25855848 AATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTAAAATTTTTAAATTTTTGTGAGATT
1 AATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTAAAATTTTTAAATTTTTGTGAGATT
** * **** * * * * ** *
25855910 AATGAGAATTTTCAAATATTTTAAGTGA-GCT-TAATTAAAATTTTAAAAAATTT-TAAGAGTT
1 AATGAG-ATTTAAAAAAAAAAAAATTGAGGGTCCAATTAAAATTTTTAAATTTTTGTGAGA-TT
25855971 AAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTAAAATTTTTAAATTTTTGTGAGATT
1 -AATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTAAAATTTTTAAATTTTTGTGAGATT
25856034 AATGAGA
1 AATGAGA
25856041 ATTTTCAAAT
Statistics
Matches: 97, Mismatches: 28, Indels: 12
0.71 0.20 0.09
Matches are distributed among these distances:
60 4 0.04
61 33 0.34
62 23 0.24
63 33 0.34
64 4 0.04
ACGTcount: A:0.47, C:0.03, G:0.14, T:0.36
Consensus pattern (62 bp):
AATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTAAAATTTTTAAATTTTTGTGAGATT
Found at i:25855944 original size:32 final size:32
Alignment explanation
Indices: 25855885--25856081 Score: 99
Period size: 32 Copynumber: 6.4 Consensus size: 32
25855875 GGGTCCAATT
*
25855885 AAAATTTTTAAAT-TTTT--GTGAGATTAATG
1 AAAATTTTCAAATATTTTAAGTGAGATTAATG
* * *
25855914 AGAATTTTCAAATATTTTAAGTGAGCTTAATT
1 AAAATTTTCAAATATTTTAAGTGAGATTAATG
* *
25855946 AAAATTTTAAAAAATTTTAA--GAG-TTAAATG
1 AAAATTTTCAAATATTTTAAGTGAGATT-AATG
* ** * **** * * * *
25855976 -AGATTTAAAAAAAAAAAAATTGAGGGTCCAATT
1 AAAATTTTCAAATATTTTAAGTGA-GAT-TAATG
*
25856009 AAAATTTTTAAAT-TTTT--GTGAGATTAATG
1 AAAATTTTCAAATATTTTAAGTGAGATTAATG
* * *
25856038 AGAATTTTCAAATATTTTAAGTGAGCTTAATT
1 AAAATTTTCAAATATTTTAAGTGAGATTAATG
25856070 AAAATTTTCAAA
1 AAAATTTTCAAA
25856082 AAAATTAAAA
Statistics
Matches: 122, Mismatches: 33, Indels: 23
0.69 0.19 0.13
Matches are distributed among these distances:
29 40 0.33
30 16 0.13
31 5 0.04
32 49 0.40
33 4 0.03
34 8 0.07
ACGTcount: A:0.44, C:0.04, G:0.12, T:0.40
Consensus pattern (32 bp):
AAAATTTTCAAATATTTTAAGTGAGATTAATG
Found at i:25855946 original size:61 final size:61
Alignment explanation
Indices: 25855881--25856077 Score: 218
Period size: 61 Copynumber: 3.2 Consensus size: 61
25855871 TTGAGGGTCC
25855881 AATTAAAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTT
1 AATTAAAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTT
* ** * ** * **** * * *
25855942 AATTAAAATTTTAAAAAATTT-TAAGAGTTAAATGAG-ATTTAAAAAAAAAAAAATTGAGGGTCC
1 AATTAAAATTTTTAAATTTTTGTGAGA-TT-AATGAGAATTTTCAAATATTTTAAGTGA-GCT-T
25856005 AATTAAAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTT
1 AATTAAAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTT
25856066 AATTAAAATTTT
1 AATTAAAATTTT
25856078 CAAAAAAATT
Statistics
Matches: 102, Mismatches: 28, Indels: 12
0.72 0.20 0.08
Matches are distributed among these distances:
60 4 0.04
61 45 0.44
62 16 0.16
63 33 0.32
64 4 0.04
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (61 bp):
AATTAAAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTT
Found at i:25855958 original size:124 final size:124
Alignment explanation
Indices: 25855821--25856084 Score: 519
Period size: 124 Copynumber: 2.1 Consensus size: 124
25855811 GAGGGACTAG
25855821 TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTA
1 TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTA
25855886 AAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTTAAT
66 AAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTTAAT
25855945 TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTA
1 TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTA
25856010 AAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTTAAT
66 AAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTTAAT
25856069 TAAAATTTTCAAAAAA
1 TAAAATTTT-AAAAAA
25856085 ATTAAAAGGT
Statistics
Matches: 139, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
124 133 0.96
125 6 0.04
ACGTcount: A:0.47, C:0.03, G:0.12, T:0.38
Consensus pattern (124 bp):
TAAAATTTTAAAAAATTTTAAGAGTTAAATGAGATTTAAAAAAAAAAAAATTGAGGGTCCAATTA
AAATTTTTAAATTTTTGTGAGATTAATGAGAATTTTCAAATATTTTAAGTGAGCTTAAT
Found at i:25871754 original size:17 final size:16
Alignment explanation
Indices: 25871708--25871755 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 16
25871698 ATGTTAATCT
25871708 TTTTGAATTTTTATGAA
1 TTTTGAATTTTT-TGAA
* *
25871725 TTTTTATATTTTTTTAA
1 TTTTGA-ATTTTTTGAA
25871742 TTTTGAATCTTTTT
1 TTTTGAAT-TTTTT
25871756 ATTTTTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
16 2 0.08
17 18 0.69
18 6 0.23
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (16 bp):
TTTTGAATTTTTTGAA
Found at i:25876217 original size:277 final size:276
Alignment explanation
Indices: 25875668--25876201 Score: 847
Period size: 276 Copynumber: 1.9 Consensus size: 276
25875658 TCCCTAAGCC
* * * * * * *
25875668 TTTGGCCAATTAAAAACTTGTAGCGATAAGACTTTTATAATTTAGTCCTTGTATTAAAATTACCT
1 TTTGGCCAATTAAAAACCTATAGCGATAAGACTTTTACAATTTAGTCATTGTACTAAAACTAACT
*
25875733 ATTAATTCTACAAAATTATTGGAAAAAACTTTAATATATTTTTTACACCAAGTCCGTAAATATTC
66 ATTAATTCTACAAAATTACTGGAAAAAACTTTAATATATTTTTTACACCAAGTCCGTAAATATTC
* **
25875798 ATATTAATATTTATGGACCCGATTTATGGAAATGAGGTTCCAAAATTGCCTTTTCTAGCACCATT
131 AAATTAATATTTATGGACCCGATTTATGGAAATGAGGTTCCAAAATCACCTTTTCTAGCACCATT
*
25875863 GAAAATCTGACTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAACTT
196 GAAAATCGGACTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAACTT
25875928 GCACGTAGCCCTTAAA
261 GCACGTAGCCCTTAAA
*
25875944 TTTGGCCAATTAAAAACCTATAGTTG-TAAGACTTTTACAATTTAGTCATTGTACTAAAACTAAC
1 TTTGGCCAATTAAAAACCTATAG-CGATAAGACTTTTACAATTTAGTCATTGTACTAAAACTAAC
* *
25876008 TATTAATTCTACAAAATTACTGGACAAAACTTTAATATATTTTTTACACCAAGTCTGTAAATATT
65 TATTAATTCTACAAAATTACTGGAAAAAACTTTAATATATTTTTTACACCAAGTCCGTAAATATT
* * * *
25876073 CAAACTTAATATTTTTGGACCTGGTTTAT-GAAATTGGGGTTCCAAAATCACCTTTTCTAGCACC
130 CAAA-TTAATATTTATGGACCCGATTTATGGAAA-TGAGGTTCCAAAATCACCTTTTCTAGCACC
*
25876137 ATTGAAAATCGGGCTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAA
193 ATTGAAAATCGGACTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAA
25876202 TGTGCTTGTA
Statistics
Matches: 235, Mismatches: 20, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
276 123 0.52
277 112 0.48
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.34
Consensus pattern (276 bp):
TTTGGCCAATTAAAAACCTATAGCGATAAGACTTTTACAATTTAGTCATTGTACTAAAACTAACT
ATTAATTCTACAAAATTACTGGAAAAAACTTTAATATATTTTTTACACCAAGTCCGTAAATATTC
AAATTAATATTTATGGACCCGATTTATGGAAATGAGGTTCCAAAATCACCTTTTCTAGCACCATT
GAAAATCGGACTGTTACATACACACTGCCGGACCTACCACGTCTCACTGGCTTGAAAAGAAACTT
GCACGTAGCCCTTAAA
Found at i:25877926 original size:40 final size:40
Alignment explanation
Indices: 25877882--25877960 Score: 113
Period size: 40 Copynumber: 2.0 Consensus size: 40
25877872 TCCTGAATAA
* *
25877882 GTGCTCCTAATAGTACTTTCGTACTCCTGTTAACACTACG
1 GTGCTCCTAATAGCACATTCGTACTCCTGTTAACACTACG
* * *
25877922 GTGCTCCTGATAGCACATTCGTGCTCCTGTTAGCACTAC
1 GTGCTCCTAATAGCACATTCGTACTCCTGTTAACACTAC
25877961 AATGCTCTAG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.20, C:0.29, G:0.18, T:0.33
Consensus pattern (40 bp):
GTGCTCCTAATAGCACATTCGTACTCCTGTTAACACTACG
Found at i:25877967 original size:20 final size:19
Alignment explanation
Indices: 25877905--25877960 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
25877895 TACTTTCGTA
*
25877905 CTCCTGTTAACACTACGGTG
1 CTCCTGTTAGCACTAC-GTG
* *
25877925 CTCCTGATAGCACATTCGTG
1 CTCCTGTTAGCAC-TACGTG
25877945 CTCCTGTTAGCACTAC
1 CTCCTGTTAGCACTAC
25877961 AATGCTCTAG
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.20, C:0.32, G:0.18, T:0.30
Consensus pattern (19 bp):
CTCCTGTTAGCACTACGTG
Found at i:25877967 original size:40 final size:40
Alignment explanation
Indices: 25877883--25877976 Score: 109
Period size: 40 Copynumber: 2.4 Consensus size: 40
25877873 CCTGAATAAG
* * * **
25877883 TGCTCCTAATAGTACTTTCGTACTCCTGTTAACACTACGG
1 TGCTCCTGATAGCACATTCGTACTCCTGTTAACACTACAA
* *
25877923 TGCTCCTGATAGCACATTCGTGCTCCTGTTAGCACTACAA
1 TGCTCCTGATAGCACATTCGTACTCCTGTTAACACTACAA
25877963 TGCT-CTAGATAGCA
1 TGCTCCT-GATAGCA
25877977 TATTTATGCT
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
39 2 0.04
40 44 0.96
ACGTcount: A:0.23, C:0.28, G:0.17, T:0.32
Consensus pattern (40 bp):
TGCTCCTGATAGCACATTCGTACTCCTGTTAACACTACAA
Found at i:25877987 original size:40 final size:40
Alignment explanation
Indices: 25877905--25877989 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 40
25877895 TACTTTCGTA
** *
25877905 CTCCTGTTAACACTACGGTGCTCCTGATAGCACATTCGTG
1 CTCCTGTTAACACTACAATGCTCCTGATAGCACATTCATG
* * *
25877945 CTCCTGTTAGCACTACAATGCT-CTAGATAGCATATTTATG
1 CTCCTGTTAACACTACAATGCTCCT-GATAGCACATTCATG
25877985 CTCCT
1 CTCCT
25877990 ATTTGCATTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
39 2 0.05
40 36 0.95
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.33
Consensus pattern (40 bp):
CTCCTGTTAACACTACAATGCTCCTGATAGCACATTCATG
Found at i:25878753 original size:35 final size:35
Alignment explanation
Indices: 25878714--25878786 Score: 137
Period size: 35 Copynumber: 2.1 Consensus size: 35
25878704 TGGTATGTTT
*
25878714 TATCAAGTTAGTGATGAATGGTTGGAATGTATGCA
1 TATCAAGTTAGTGATGAATGATTGGAATGTATGCA
25878749 TATCAAGTTAGTGATGAATGATTGGAATGTATGCA
1 TATCAAGTTAGTGATGAATGATTGGAATGTATGCA
25878784 TAT
1 TAT
25878787 TATCAATGAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.05, G:0.26, T:0.36
Consensus pattern (35 bp):
TATCAAGTTAGTGATGAATGATTGGAATGTATGCA
Found at i:25883048 original size:26 final size:26
Alignment explanation
Indices: 25882985--25883046 Score: 65
Period size: 27 Copynumber: 2.4 Consensus size: 26
25882975 AACTTTGGAT
25882985 TAAAAT-TAAAGCGAATTGATCAACA
1 TAAAATATAAAGCGAATTGATCAACA
* * * *
25883010 AAAAAAATTAAAGCGAATTTAT-AGCA
1 TAAAATA-TAAAGCGAATTGATCAACA
25883036 TAAAATATAAA
1 TAAAATATAAA
25883047 AGGTTAAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
25 8 0.28
26 8 0.28
27 13 0.45
ACGTcount: A:0.58, C:0.08, G:0.10, T:0.24
Consensus pattern (26 bp):
TAAAATATAAAGCGAATTGATCAACA
Found at i:25891874 original size:21 final size:21
Alignment explanation
Indices: 25891848--25891888 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
25891838 TATTTTATCA
25891848 TAAACCCT-AACCTCAGAACCC
1 TAAACCCTAAACCT-AGAACCC
*
25891869 TAAACCTTAAACCTAGAACC
1 TAAACCCTAAACCTAGAACC
25891889 TCGAACTTCG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.41, C:0.37, G:0.05, T:0.17
Consensus pattern (21 bp):
TAAACCCTAAACCTAGAACCC
Found at i:25906009 original size:43 final size:43
Alignment explanation
Indices: 25905954--25906194 Score: 168
Period size: 43 Copynumber: 5.6 Consensus size: 43
25905944 TGAAGCCAGA
*
25905954 GATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACAC
1 GATCCTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACAC
* * ** ** * * *
25905997 TATCCTATCTCCCTGAGTTTACAGCGGAGCGGATTAAAATAAAG
1 GATCCTATCTCCCTGAGATTACAGCGGAGTAGA-TCGAAGACAC
* * * *
25906041 GAT-CTCATCTCTCTGA-AGTTACAGTGGAGTAGATCGCA-TCA-
1 GATCCT-ATCTCCCTGAGA-TTACAGCGGAGTAGATCGAAGACAC
* * * * *
25906082 GGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTTC
1 GATCCTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACA---C
* *
25906127 AGATCTTGTCTCCCTGAGATTACAGCGGAGTAGATCGAAGACAC
1 -GATCCTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACAC
* * *
25906171 TATCCTATCTCCCCGAGTTTACAG
1 GATCCTATCTCCCTGAGATTACAG
25906195 TGGGGCGGAT
Statistics
Matches: 148, Mismatches: 38, Indels: 24
0.70 0.18 0.11
Matches are distributed among these distances:
41 30 0.20
42 2 0.01
43 51 0.34
44 29 0.20
46 35 0.24
47 1 0.01
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.27
Consensus pattern (43 bp):
GATCCTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACAC
Found at i:25906051 original size:87 final size:87
Alignment explanation
Indices: 25905954--25906250 Score: 316
Period size: 87 Copynumber: 3.4 Consensus size: 87
25905944 TGAAGCCAGA
*
25905954 GATCTTATCTCCCTG-AGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTA
1 GATCTCATCTCCCTGAAG-TTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTA
*
25906018 CAGCGGAGCGGATTAAAATAAAG
65 CAGTGGAGCGGATTAAAATAAAG
* * * * ** * *
25906041 GATCTCATCTCTCTGAAGTTACAGTGGAGTAGATCGCA-TCA-GGTCTTATCTCCCTGAGGTTAC
1 GATCTCATCTCCCTGAAGTTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTAC
** ** **
25906104 AGTGGAGTAGACCGAAGAATTTCA-
66 AGTGGAGCGGA-TTAA-AA-TAAAG
** *
25906128 GATCTTGTCTCCCTG-AGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
1 GATCTCATCTCCCTGAAG-TTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTA
* *
25906192 CAGTGGGGCGGATTAAAATAAGG
65 CAGTGGAGCGGATTAAAATAAAG
*
25906215 GATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCG
1 GATCTCATCTCCCTGAAGTTACAGCGGAGTAGATCG
25906251 CATCAGGTCT
Statistics
Matches: 163, Mismatches: 38, Indels: 18
0.74 0.17 0.08
Matches are distributed among these distances:
85 26 0.16
86 7 0.04
87 95 0.58
88 10 0.06
89 25 0.15
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (87 bp):
GATCTCATCTCCCTGAAGTTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTAC
AGTGGAGCGGATTAAAATAAAG
Found at i:25906103 original size:41 final size:41
Alignment explanation
Indices: 25906047--25906288 Score: 155
Period size: 41 Copynumber: 5.7 Consensus size: 41
25906037 AAAGGATCTC
* *
25906047 ATCTCTCTGAAGTTACAGTGGAGTAGATCGCATCAGGTCTT
1 ATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTT
* * *
25906088 ATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTCAGATCTT
1 ATCTCCCTGAAGTTACAGTGGAGTAGATC---GAA--TCAGGTCTT
* * * ** *
25906134 GTCTCCCTG-AGATTACAGCGGAGTAGATCGAAGACACTATCCT
1 ATCTCCCTGAAG-TTACAGTGGAGTAGATCGAA-TCA-GGTCTT
* * ** ** * *
25906177 ATCTCCCCG-AGTTTACAGTGGGGCGGATTAAAATAAGGGATCTC
1 ATCTCCCTGAAG-TTACAGTGGAGTAGA-TCGAATCA-GG-TCTT
* * *
25906221 ATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAGGTCTT
1 ATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTT
*
25906262 ATCTCCCTGAAGTCACAGTGGAGTAGA
1 ATCTCCCTGAAGTTACAGTGGAGTAGA
25906289 CCAAAGATAC
Statistics
Matches: 148, Mismatches: 43, Indels: 20
0.70 0.20 0.09
Matches are distributed among these distances:
41 53 0.36
42 4 0.03
43 32 0.22
44 25 0.17
45 3 0.02
46 31 0.21
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (41 bp):
ATCTCCCTGAAGTTACAGTGGAGTAGATCGAATCAGGTCTT
Found at i:25906157 original size:46 final size:46
Alignment explanation
Indices: 25906079--25906167 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
25906069 GTAGATCGCA
* * *
25906079 TCAGGTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATT
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGACCGAAGAATT
* *
25906125 TCAGATCTTGTCTCCCTGAGATTACAGCGGAGTAGATCGAAGA
1 TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGACCGAAGA
25906168 CACTATCCTA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (46 bp):
TCAGATCTTATCTCCCTGAGATTACAGCGGAGTAGACCGAAGAATT
Found at i:25906246 original size:174 final size:174
Alignment explanation
Indices: 25905953--25906295 Score: 605
Period size: 174 Copynumber: 2.0 Consensus size: 174
25905943 TTGAAGCCAG
*
25905953 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCTGAGTTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
*
25906018 CAGCGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGTGGAGTAGATCGCATCAG
66 CAGCGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAG
* * *
25906083 GTCTTATCTCCCTGAGGTTACAGTGGAGTAGACCGAAGAATTTC
131 GTCTTATCTCCCTGAAGTCACAGTGGAGTAGACCAAAGAATTTC
*
25906127 AGATCTTGTCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
1 AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
* * *
25906192 CAGTGGGGCGGATTAAAATAAGGGATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAG
66 CAGCGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAG
25906257 GTCTTATCTCCCTGAAGTCACAGTGGAGTAGACCAAAGA
131 GTCTTATCTCCCTGAAGTCACAGTGGAGTAGACCAAAGA
25906296 TACAAGTATT
Statistics
Matches: 160, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 160 1.00
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.26
Consensus pattern (174 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGTAGATCGAAGACACTATCCTATCTCCCCGAGTTTA
CAGCGGAGCGGATTAAAATAAAGGATCTCATCTCTCTGAAGTTACAGCGGAGTAGATCGCATCAG
GTCTTATCTCCCTGAAGTCACAGTGGAGTAGACCAAAGAATTTC
Found at i:25923795 original size:23 final size:24
Alignment explanation
Indices: 25923769--25923815 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
25923759 CACATATATA
*
25923769 TATTAATTAC-TTTAAAACCGAAT
1 TATTAATTACATGTAAAACCGAAT
**
25923792 TATTGCTTACATGTAAAACCGAAT
1 TATTAATTACATGTAAAACCGAAT
25923816 AATCGTCACA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 8 0.40
24 12 0.60
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.36
Consensus pattern (24 bp):
TATTAATTACATGTAAAACCGAAT
Found at i:25927130 original size:45 final size:47
Alignment explanation
Indices: 25927079--25927167 Score: 119
Period size: 45 Copynumber: 1.9 Consensus size: 47
25927069 CTCTGGTAAT
* * *
25927079 AACTCTTCGGAGTTACCTGTTA-AGCTCA-ATGAGCTTCCTATTTTA
1 AACTCTTAGGAGTTACCTGTTATAGCCCAGATAAGCTTCCTATTTTA
* *
25927124 AACTCTTATGAGTTTCCTGTTATAGCCCAGATAAGCTTCCTATT
1 AACTCTTAGGAGTTACCTGTTATAGCCCAGATAAGCTTCCTATT
25927168 ACATGGCTGA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
45 19 0.51
46 5 0.14
47 13 0.35
ACGTcount: A:0.25, C:0.22, G:0.15, T:0.38
Consensus pattern (47 bp):
AACTCTTAGGAGTTACCTGTTATAGCCCAGATAAGCTTCCTATTTTA
Found at i:25927264 original size:35 final size:35
Alignment explanation
Indices: 25927214--25927286 Score: 112
Period size: 35 Copynumber: 2.1 Consensus size: 35
25927204 GAGAGTGCTT
* *
25927214 CCTGATTATGTGTTGACGGATCA-TAGTTTTGTACA
1 CCTGAATATGAGTTGACGGATCACT-GTTTTGTACA
25927249 CCTGAATATGAGTTGACGGATCACTGTTTTGTACA
1 CCTGAATATGAGTTGACGGATCACTGTTTTGTACA
25927284 CCT
1 CCT
25927287 CGTGTATACT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 34 0.97
36 1 0.03
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (35 bp):
CCTGAATATGAGTTGACGGATCACTGTTTTGTACA
Found at i:25928748 original size:20 final size:22
Alignment explanation
Indices: 25928723--25928769 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
25928713 CATGTTAATA
25928723 TATTTTT-ATCATG-TTTGTAT
1 TATTTTTAATCATGTTTTGTAT
* *
25928743 TATTTTTAATTATGTTTTGTTT
1 TATTTTTAATCATGTTTTGTAT
25928765 TATTT
1 TATTT
25928770 ATTTTATCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 7 0.30
21 5 0.22
22 11 0.48
ACGTcount: A:0.19, C:0.02, G:0.09, T:0.70
Consensus pattern (22 bp):
TATTTTTAATCATGTTTTGTAT
Found at i:25931247 original size:34 final size:36
Alignment explanation
Indices: 25931181--25931247 Score: 84
Period size: 34 Copynumber: 1.9 Consensus size: 36
25931171 AAAAAATTAT
* *
25931181 TTTTTTAATGGCGCCTATCAGATAGGCACCAATAAA
1 TTTTTTAATGGCGCCTATCACAGAGGCACCAATAAA
* *
25931217 TTTTTT-AT-GCGCCTATCTCAGAGGCGCCAAT
1 TTTTTTAATGGCGCCTATCACAGAGGCACCAAT
25931248 GGTGGAGCCT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 19 0.70
35 2 0.07
36 6 0.22
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (36 bp):
TTTTTTAATGGCGCCTATCACAGAGGCACCAATAAA
Found at i:25931266 original size:27 final size:27
Alignment explanation
Indices: 25931227--25931306 Score: 90
Period size: 27 Copynumber: 3.0 Consensus size: 27
25931217 TTTTTTATGC
*
25931227 GCCTATCTCAGAGGCGCCAATGGTGGA
1 GCCTATCTGAGAGGCGCCAATGGTGGA
* * * *
25931254 GCCTATCTGAGAGGCGCCACTAGTTGT
1 GCCTATCTGAGAGGCGCCAATGGTGGA
*
25931281 GCC-ATGTTGAGAGGCGCCAATGGTGG
1 GCCTAT-CTGAGAGGCGCCAATGGTGG
25931307 GGCCCACAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
26 2 0.05
27 41 0.95
ACGTcount: A:0.20, C:0.24, G:0.35, T:0.21
Consensus pattern (27 bp):
GCCTATCTGAGAGGCGCCAATGGTGGA
Found at i:25936045 original size:22 final size:22
Alignment explanation
Indices: 25936017--25936059 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
25936007 TATTTGGCGT
*
25936017 GACTAATGGTAGAATAGTGGTG
1 GACTAATGGCAGAATAGTGGTG
*
25936039 GACTAATGGCAGCATAGTGGT
1 GACTAATGGCAGAATAGTGGT
25936060 CATGCCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.30, C:0.09, G:0.35, T:0.26
Consensus pattern (22 bp):
GACTAATGGCAGAATAGTGGTG
Found at i:25941474 original size:51 final size:51
Alignment explanation
Indices: 25941393--25941612 Score: 368
Period size: 51 Copynumber: 4.3 Consensus size: 51
25941383 CAGATCATAT
*
25941393 TTATTACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
* **
25941444 TTATCACTTGTCACATGTCACTGATCAGATAAGTGGTAGCTTTAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGT-GTAGCTAAAGCTACCAC
25941496 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
** *
25941547 TTATCACTTGTCACTTGTCGTTGATCAGATAAGTGTAGCTAAAACTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
25941598 TTATCACTTGTCACT
1 TTATCACTTGTCACT
25941613 GATCAGAAGT
Statistics
Matches: 158, Mismatches: 10, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
51 110 0.70
52 48 0.30
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCAC
Found at i:25941517 original size:103 final size:102
Alignment explanation
Indices: 25941393--25941612 Score: 368
Period size: 103 Copynumber: 2.1 Consensus size: 102
25941383 CAGATCATAT
*
25941393 TTATTACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
** *
25941458 ATGTCACTGATCAGATAAGTGGTAGCTTTAGCTACCAC
66 ATGTCACTGATCAGATAAGT-GTAGCTAAAACTACCAC
25941496 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
* **
25941561 TTGTCGTTGATCAGATAAGTGTAGCTAAAACTACCAC
66 ATGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
25941598 TTATCACTTGTCACT
1 TTATCACTTGTCACT
25941613 GATCAGAAGT
Statistics
Matches: 110, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
102 29 0.26
103 81 0.74
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (102 bp):
TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTGTCAC
ATGTCACTGATCAGATAAGTGTAGCTAAAACTACCAC
Found at i:25944149 original size:24 final size:23
Alignment explanation
Indices: 25944121--25944166 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
25944111 TTGTTGATTA
*
25944121 AATTAATAAGAATTCGAAA-AAAAT
1 AATTAA-AAAAATT-GAAACAAAAT
25944145 AATTAAAAAAATTGAAACAAAA
1 AATTAAAAAAATTGAAACAAAA
25944167 AAGAAATAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 10 0.50
24 6 0.30
ACGTcount: A:0.67, C:0.04, G:0.07, T:0.22
Consensus pattern (23 bp):
AATTAAAAAAATTGAAACAAAAT
Found at i:25948471 original size:33 final size:33
Alignment explanation
Indices: 25948423--25948490 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
25948413 GAGGACAGAC
* *
25948423 AAGCAACCTAGGACAAAG-AAATGGACAGACATT
1 AAGCAACCCAAGACAAAGAAAAT-GACAGACATT
25948456 AAGCAACCCAAGACAAAGAAAATGACAGACATT
1 AAGCAACCCAAGACAAAGAAAATGACAGACATT
25948489 AA
1 AA
25948491 TCCACCTAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.53, C:0.19, G:0.18, T:0.10
Consensus pattern (33 bp):
AAGCAACCCAAGACAAAGAAAATGACAGACATT
Found at i:25948827 original size:13 final size:13
Alignment explanation
Indices: 25948820--25948874 Score: 51
Period size: 13 Copynumber: 4.2 Consensus size: 13
25948810 TTATTCTTAA
25948820 TAAATATTTAAAT
1 TAAATATTTAAAT
*
25948833 TAAATATTTAATAA
1 TAAATATTTAA-AT
25948847 TAAA-ATTT-AAT
1 TAAATATTTAAAT
*
25948858 TGATAATTTTTAAAT
1 T-A-AATATTTAAAT
25948873 TA
1 TA
25948875 TTTTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 9
0.74 0.07 0.20
Matches are distributed among these distances:
11 2 0.06
12 2 0.06
13 17 0.50
14 9 0.26
15 4 0.12
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (13 bp):
TAAATATTTAAAT
Found at i:25948863 original size:14 final size:14
Alignment explanation
Indices: 25948817--25948857 Score: 59
Period size: 13 Copynumber: 3.1 Consensus size: 14
25948807 ATTTTATTCT
25948817 TAATAAATATTTAA
1 TAATAAATATTTAA
*
25948831 -ATTAAATATTTAA
1 TAATAAATATTTAA
25948844 TAATAAA-ATTTAA
1 TAATAAATATTTAA
25948857 T
1 T
25948858 TGATAATTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 19 0.79
14 5 0.21
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
TAATAAATATTTAA
Found at i:25954849 original size:43 final size:42
Alignment explanation
Indices: 25954786--25954911 Score: 139
Period size: 43 Copynumber: 2.9 Consensus size: 42
25954776 AGGACTTCGA
25954786 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTCGGCATCGAC
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACGT-GGCATCG-C
* *
25954830 T-TGTGTTTTCGTGTAAGACC-CTGTCTAGGACAGTGGCATCGG
1 TATGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTGGCATCGC
* * * *
25954872 TATGTGATTACATGTAAGACCATGTCTGGGACGTTGGCAT
1 TATGTGTTTTCGTGTAAGACCACGTCTGGGACG-TGGCAT
25954912 TGTACTAGCT
Statistics
Matches: 70, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
42 3 0.04
43 64 0.91
44 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.32
Consensus pattern (42 bp):
TATGTGTTTTCGTGTAAGACCACGTCTGGGACGTGGCATCGC
Found at i:25955590 original size:15 final size:15
Alignment explanation
Indices: 25955558--25955606 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
25955548 TACTTTAATC
25955558 ATGGATTAGTATTT-T
1 ATGG-TTAGTATTTAT
25955573 ATGGTTAGTATTTAT
1 ATGGTTAGTATTTAT
* *
25955588 ATGGTAATGTATATAT
1 ATGGTTA-GTATTTAT
25955604 ATG
1 ATG
25955607 TGTGCATGGT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 9 0.30
15 11 0.37
16 10 0.33
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (15 bp):
ATGGTTAGTATTTAT
Found at i:25955902 original size:47 final size:47
Alignment explanation
Indices: 25955833--25956042 Score: 327
Period size: 47 Copynumber: 4.5 Consensus size: 47
25955823 GAGTAAATGA
25955833 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
*
25955880 ATGTATATGCTATCAAATTTTGATGTACAAATGCAGTCCAATTATATAT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAA-T-TATAT
*
25955929 ATGTATATGCTGTCAAA-TTTGATGTACAAATGCAGTCCAATTATTT
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
*
25955975 ATGTATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-T-T
1 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
* *
25956020 GTATATATGCTGTCTAAATTTTG
1 ATGTATATGCTGTC-AAATTTTG
25956043 GTGTGAAAAT
Statistics
Matches: 153, Mismatches: 6, Indels: 9
0.91 0.04 0.05
Matches are distributed among these distances:
45 13 0.08
46 30 0.20
47 65 0.42
48 24 0.16
49 21 0.14
ACGTcount: A:0.33, C:0.12, G:0.15, T:0.40
Consensus pattern (47 bp):
ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATAT
Found at i:25955997 original size:95 final size:93
Alignment explanation
Indices: 25955833--25956040 Score: 330
Period size: 95 Copynumber: 2.2 Consensus size: 93
25955823 GAGTAAATGA
25955833 ATGTATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTATCAAAT
1 ATGTATATGCTGTCAAA-TTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTATCAAAT
25955898 TTTGATGTACAAATGCAGTCCAATTATATAT
65 TTTGATGTACAAATGCAGTCCAATT-T-TAT
* *
25955929 ATGTATATGCTGTCAAATTTGATGTACAAATGCAGTCCAATTATTTATGTATATGCTGTCAAATT
1 ATGTATATGCTGTCAAATTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTATCAAATT
* *
25955994 TTGATGTATAAATGCAGTCCAATTTTGT
66 TTGATGTACAAATGCAGTCCAATTTTAT
25956022 A--TATATGCTGTCTAAATTT
1 ATGTATATGCTGTC-AAATTT
25956041 TGGTGTGAAA
Statistics
Matches: 107, Mismatches: 4, Indels: 6
0.91 0.03 0.05
Matches are distributed among these distances:
91 11 0.10
92 6 0.06
93 3 0.03
94 1 0.01
95 69 0.64
96 17 0.16
ACGTcount: A:0.33, C:0.12, G:0.14, T:0.40
Consensus pattern (93 bp):
ATGTATATGCTGTCAAATTTGATGTACAAATGCAGTCCAATTATATATGTATATGCTATCAAATT
TTGATGTACAAATGCAGTCCAATTTTAT
Found at i:25956070 original size:46 final size:45
Alignment explanation
Indices: 25955836--25956072 Score: 214
Period size: 47 Copynumber: 5.1 Consensus size: 45
25955826 TAAATGAATG
* *
25955836 TATATGCTGTCAAATTTTGATGTACAAATGCAGTCCAATTAT-ATA
1 TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-TGGTA
* * **
25955881 TGTATATGCTATCAAATTTTGATGTACAAATGCAGTCCAATTATATATA
1 --TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-T-GGTA
* *
25955930 TGTATATGCTGTCAAA-TTTGATGTACAAATGCAGTCCAATTAT-TTA
1 --TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATT-TGGTA
*
25955976 TGTATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTTTGTA
1 --TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTTGGTA
* * *
25956023 TATATGCTGTCTAAATTTTGGTGTGA-AAATGCTA-TCTAGTTTGGTA
1 TATATGCTGTC-AAATTTTGATGT-ATAAATGC-AGTCCAATTTGGTA
25956069 TATA
1 TATA
25956073 AATGCAGTTC
Statistics
Matches: 174, Mismatches: 9, Indels: 15
0.88 0.05 0.08
Matches are distributed among these distances:
45 11 0.06
46 49 0.28
47 69 0.40
48 27 0.16
49 18 0.10
ACGTcount: A:0.32, C:0.11, G:0.16, T:0.41
Consensus pattern (45 bp):
TATATGCTGTCAAATTTTGATGTATAAATGCAGTCCAATTTGGTA
Found at i:25956656 original size:42 final size:43
Alignment explanation
Indices: 25956502--25956663 Score: 236
Period size: 43 Copynumber: 3.8 Consensus size: 43
25956492 ATTTTTCGAA
25956502 ACAAACGCCACTAAAGACCAAGACCTTTAGCGGCGCTTTTACC
1 ACAAACGCCACTAAAGACCAAGACCTTTAGCGGCGCTTTTACC
* *
25956545 ACAAATGCCACTAAAGACCAAGACCTTTAGCGGCGCTTTTTCC
1 ACAAACGCCACTAAAGACCAAGACCTTTAGCGGCGCTTTTACC
* * * *
25956588 ACAAACGCCGCTATAGACCACGACCTTTAGCGGCGCTTTTCCC
1 ACAAACGCCACTAAAGACCAAGACCTTTAGCGGCGCTTTTACC
* * *
25956631 ACAAACGCCGCTATAGAACAA-ACCTTTAGCGGC
1 ACAAACGCCACTAAAGACCAAGACCTTTAGCGGC
25956664 ACTTCTCGCA
Statistics
Matches: 110, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
42 12 0.11
43 98 0.89
ACGTcount: A:0.30, C:0.33, G:0.17, T:0.20
Consensus pattern (43 bp):
ACAAACGCCACTAAAGACCAAGACCTTTAGCGGCGCTTTTACC
Found at i:25956697 original size:42 final size:42
Alignment explanation
Indices: 25956567--25956700 Score: 117
Period size: 43 Copynumber: 3.2 Consensus size: 42
25956557 AAAGACCAAG
* * * * * * *
25956567 ACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTATAGACCACG
1 ACCTTTAGCGGCACTTCTCCCAAAAACGCCGCTATAAAACA-A
* * * *
25956610 ACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGAACAA
1 ACCTTTAGCGGCACTTCTCCCAAAAACGCCGCTATAAAACAA
* * *
25956652 ACCTTTAGCGGCACTTCTCGCAAAAATGCCGCTA-AAAATATA
1 ACCTTTAGCGGCACTTCTCCCAAAAACGCCGCTATAAAACA-A
25956694 ACCTTTA
1 ACCTTTA
25956701 AAAAAATTTA
Statistics
Matches: 80, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
41 4 0.05
42 37 0.46
43 39 0.49
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.24
Consensus pattern (42 bp):
ACCTTTAGCGGCACTTCTCCCAAAAACGCCGCTATAAAACAA
Found at i:25960678 original size:13 final size:13
Alignment explanation
Indices: 25960660--25960686 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
25960650 ATTGTCAATC
25960660 TGTTACATTAATT
1 TGTTACATTAATT
25960673 TGTTACATTAATT
1 TGTTACATTAATT
25960686 T
1 T
25960687 ATTTATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.30, C:0.07, G:0.07, T:0.56
Consensus pattern (13 bp):
TGTTACATTAATT
Found at i:25961173 original size:21 final size:21
Alignment explanation
Indices: 25961149--25961200 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 21
25961139 CAAATCTTTA
25961149 AACCCTAAACCACTAACT-CTT
1 AACCCTAAACCACTAACTAC-T
*
25961170 AACCTCT-AACCCCTAACTACT
1 AACC-CTAAACCACTAACTACT
25961191 AACCCCTAAA
1 AA-CCCTAAA
25961201 TCTTATTTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 19 0.73
22 7 0.27
ACGTcount: A:0.38, C:0.40, G:0.00, T:0.21
Consensus pattern (21 bp):
AACCCTAAACCACTAACTACT
Found at i:25961269 original size:76 final size:75
Alignment explanation
Indices: 25961175--25961314 Score: 192
Period size: 76 Copynumber: 1.9 Consensus size: 75
25961165 CTCTTAACCT
* * * *
25961175 CTAACCCCTAACTACTAACCCCTAAATCTTATTTAATATACAAATTA-AAAACACTAATTAATCT
1 CTAAACCCTAACCACTAACCCCTAAACCTTATTCAATAT--AAATTAGAAAACACTAATTAATCT
25961239 AGACTCTAAATC
64 AGACTCTAAATC
* * *
25961251 CTAAACCCTAACCCCTAACCCCTACACCTTATTCAATATAAATTAGAACACACTAATTAATCTA
1 CTAAACCCTAACCACTAACCCCTAAACCTTATTCAATATAAATTAGAAAACACTAATTAATCTA
25961315 AACCTTAAAC
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
74 6 0.11
75 17 0.30
76 33 0.59
ACGTcount: A:0.42, C:0.28, G:0.01, T:0.29
Consensus pattern (75 bp):
CTAAACCCTAACCACTAACCCCTAAACCTTATTCAATATAAATTAGAAAACACTAATTAATCTAG
ACTCTAAATC
Found at i:25961514 original size:14 final size:14
Alignment explanation
Indices: 25961492--25961528 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
25961482 ATCCTAAATT
25961492 AACCATATACCCTA
1 AACCATATACCCTA
*
25961506 AATCATATACCCTA
1 AACCATATACCCTA
25961520 AACCATATA
1 AACCATATA
25961529 TATTAAACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (14 bp):
AACCATATACCCTA
Found at i:25961928 original size:41 final size:41
Alignment explanation
Indices: 25961864--25962107 Score: 389
Period size: 41 Copynumber: 6.0 Consensus size: 41
25961854 TCAAAAACGG
* * *
25961864 GCATTAGCGGCCCTTTTTAAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* *
25961905 GCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGGTCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* *
25961946 GCATTAGCGGCGCTTATTCAAAAACGCCGCTAAAGGCTCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* *
25961987 GTATTAGCGGCGCTTCTTAAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* *
25962028 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAAGCCAGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
25962069 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCC
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCC
25962108 CCAAAACTCA
Statistics
Matches: 185, Mismatches: 18, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 185 1.00
ACGTcount: A:0.29, C:0.29, G:0.23, T:0.19
Consensus pattern (41 bp):
GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
Found at i:25962277 original size:40 final size:39
Alignment explanation
Indices: 25962143--25962277 Score: 157
Period size: 40 Copynumber: 3.4 Consensus size: 39
25962133 GGGCTTAGGC
* *
25962143 TTTTT-GCGGCGCTTTTCAAAAAACGCCGCTAATGCTT-A
1 TTTTTAGCGGCG-TTTTTAAAAAGCGCCGCTAATGCTTGA
* * *
25962181 TTTTTAGCGGTGTTTTCCAAAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTT-TAAAAAGCGCCGCTAATGCTTGA
**
25962221 CCTTTAGCGGCGTTTTTATAAAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTA-AAAAGCGCCGCTAATGCTTGA
*
25962261 TTTTTAGTGGCGTTTTT
1 TTTTTAGCGGCGTTTTT
25962278 TGTTCAAACG
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
38 9 0.11
39 25 0.30
40 48 0.59
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTAAAAAGCGCCGCTAATGCTTGA
Found at i:25969491 original size:71 final size:71
Alignment explanation
Indices: 25969405--25969544 Score: 165
Period size: 71 Copynumber: 2.0 Consensus size: 71
25969395 ATCCTCAGAT
* **
25969405 GTTTCATTACCACATATCTA-TAAACTATCAAGCATGCTAGAGAATCTGAAAAATTCAAAGTTAC
1 GTTTCATAACCACATATCTACT-AACTATCAAGCAAACTAGAGAATCTGAAAAATTCAAAGTTAC
25969469 CATAAGC
65 CATAAGC
* * * * * * **
25969476 GTTTCATAACTACATATGTACTGACTATGAAGCAAACTAGAGTATCTGAAGAATTTGAAGTTACC
1 GTTTCATAACCACATATCTACTAACTATCAAGCAAACTAGAGAATCTGAAAAATTCAAAGTTACC
25969541 ATAA
66 ATAA
25969545 ATGCAAAACA
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
71 56 0.98
72 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.14, T:0.29
Consensus pattern (71 bp):
GTTTCATAACCACATATCTACTAACTATCAAGCAAACTAGAGAATCTGAAAAATTCAAAGTTACC
ATAAGC
Found at i:25975370 original size:15 final size:15
Alignment explanation
Indices: 25975352--25975402 Score: 70
Period size: 15 Copynumber: 3.4 Consensus size: 15
25975342 CATCAATAAT
25975352 TCATCAATCAACTCA
1 TCATCAATCAACTCA
25975367 TCATCATAATCAA-T-A
1 TCATC--AATCAACTCA
25975382 TCATCAATCAACTCA
1 TCATCAATCAACTCA
25975397 TCATCA
1 TCATCA
25975403 TAGTCAATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
13 6 0.19
14 1 0.03
15 18 0.56
16 1 0.03
17 6 0.19
ACGTcount: A:0.41, C:0.29, G:0.00, T:0.29
Consensus pattern (15 bp):
TCATCAATCAACTCA
Found at i:25975388 original size:30 final size:30
Alignment explanation
Indices: 25975343--25975417 Score: 123
Period size: 30 Copynumber: 2.4 Consensus size: 30
25975333 CACCGCGTTC
25975343 ATCAATAATTCATCAATCAACTCATCATCATA
1 ATCAAT-A-TCATCAATCAACTCATCATCATA
25975375 ATCAATATCATCAATCAACTCATCATCATA
1 ATCAATATCATCAATCAACTCATCATCATA
*
25975405 GTCAATATCATCA
1 ATCAATATCATCA
25975418 TCCTCGATGA
Statistics
Matches: 42, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
30 35 0.83
31 1 0.02
32 6 0.14
ACGTcount: A:0.43, C:0.25, G:0.01, T:0.31
Consensus pattern (30 bp):
ATCAATATCATCAATCAACTCATCATCATA
Found at i:25975414 original size:15 final size:14
Alignment explanation
Indices: 25975341--25975418 Score: 67
Period size: 15 Copynumber: 5.5 Consensus size: 14
25975331 AACACCGCGT
25975341 TCATCA-AT-AAT-
1 TCATCATATCAATA
25975352 TCATCA-ATCAACTCA
1 TCATCATATCAA-T-A
25975367 TCATCATAATCAATA
1 TCATCAT-ATCAATA
25975382 TCATCA-ATCAACTCA
1 TCATCATATCAA-T-A
25975397 TCATCATAGTCAATA
1 TCATCATA-TCAATA
25975412 TCATCAT
1 TCATCAT
25975419 CCTCGATGAT
Statistics
Matches: 57, Mismatches: 0, Indels: 16
0.78 0.00 0.22
Matches are distributed among these distances:
11 8 0.14
12 2 0.04
13 6 0.11
14 1 0.02
15 28 0.49
16 3 0.05
17 9 0.16
ACGTcount: A:0.41, C:0.26, G:0.01, T:0.32
Consensus pattern (14 bp):
TCATCATATCAATA
Found at i:25980237 original size:21 final size:21
Alignment explanation
Indices: 25980195--25980237 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
25980185 CGAAATATCC
* *
25980195 TGTAATAATAAAATTCTCTCA
1 TGTAATAACAAAATTCCCTCA
25980216 TGTAATAACAAAA-TCCCGTCA
1 TGTAATAACAAAATTCCC-TCA
25980237 T
1 T
25980238 TGTATAAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 3 0.16
21 16 0.84
ACGTcount: A:0.42, C:0.19, G:0.07, T:0.33
Consensus pattern (21 bp):
TGTAATAACAAAATTCCCTCA
Found at i:25980549 original size:30 final size:30
Alignment explanation
Indices: 25980491--25980552 Score: 90
Period size: 30 Copynumber: 2.1 Consensus size: 30
25980481 CCATTAAAGA
* *
25980491 AATCTCAACATTTGTATTTGGTGAGATTTG
1 AATCTCAACATTTGCATTTGATGAGATTTG
25980521 AATCTCAACATTTGCATTTGAT-AGGATTTG
1 AATCTCAACATTTGCATTTGATGA-GATTTG
25980551 AA
1 AA
25980553 CCTGTGCCCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 1 0.03
30 28 0.97
ACGTcount: A:0.31, C:0.11, G:0.18, T:0.40
Consensus pattern (30 bp):
AATCTCAACATTTGCATTTGATGAGATTTG
Found at i:25981056 original size:57 final size:57
Alignment explanation
Indices: 25980991--25981100 Score: 193
Period size: 57 Copynumber: 1.9 Consensus size: 57
25980981 AAACTTAATG
*
25980991 TACCATTATATTAAATTATTTAAATATCGTATAATTTAACTAATTTTAACTTTCATT
1 TACCATTATATTAAATTATTTAAATATCGTATAATTTAAATAATTTTAACTTTCATT
* *
25981048 TACCATTATATTAAATTATTTAAATCTTGTATAATTTAAATAATTTTAACTTT
1 TACCATTATATTAAATTATTTAAATATCGTATAATTTAAATAATTTTAACTTT
25981101 AACTTTATGT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 50 1.00
ACGTcount: A:0.39, C:0.09, G:0.02, T:0.50
Consensus pattern (57 bp):
TACCATTATATTAAATTATTTAAATATCGTATAATTTAAATAATTTTAACTTTCATT
Found at i:25984530 original size:18 final size:19
Alignment explanation
Indices: 25984497--25984534 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
25984487 AGACTCCAGG
*
25984497 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
25984516 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
25984534 T
1 T
25984535 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:25986770 original size:20 final size:20
Alignment explanation
Indices: 25986747--25986792 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
25986737 GGGTTAAGAT
*
25986747 TGAGCTAAATTGAGCTTGAG
1 TGAGCTAAATTGAGCTCGAG
* * *
25986767 TGAGTTGACTTGAGCTCGAG
1 TGAGCTAAATTGAGCTCGAG
25986787 TGAGCT
1 TGAGCT
25986793 GGAAACGAGC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.24, C:0.13, G:0.33, T:0.30
Consensus pattern (20 bp):
TGAGCTAAATTGAGCTCGAG
Found at i:25990436 original size:15 final size:17
Alignment explanation
Indices: 25990408--25990440 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
25990398 AATAATTCAT
25990408 TAATCAACTCATCATCA
1 TAATCAACTCATCATCA
25990425 TAATCAA-T-ATCATCA
1 TAATCAACTCATCATCA
25990440 T
1 T
25990441 CCTCGATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 8 0.50
16 1 0.06
17 7 0.44
ACGTcount: A:0.42, C:0.24, G:0.00, T:0.33
Consensus pattern (17 bp):
TAATCAACTCATCATCA
Found at i:26005635 original size:20 final size:20
Alignment explanation
Indices: 26005612--26005654 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
26005602 AATTCTAAAA
26005612 TCTGAAAAGTAAGACCAAAT
1 TCTGAAAAGTAAGACCAAAT
26005632 TCTGAAAAGTAAGACCAAAT
1 TCTGAAAAGTAAGACCAAAT
26005652 TCT
1 TCT
26005655 AAATTTGTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.47, C:0.16, G:0.14, T:0.23
Consensus pattern (20 bp):
TCTGAAAAGTAAGACCAAAT
Found at i:26010740 original size:30 final size:30
Alignment explanation
Indices: 26010706--26010791 Score: 100
Period size: 31 Copynumber: 2.8 Consensus size: 30
26010696 GTTACAAAAT
**
26010706 AGTCATTAAGGTATTTGAAAGTTTTCATTA
1 AGTCATTAAACTATTTGAAAGTTTTCATTA
* * * *
26010736 AGTCACTAAATTATTTGAAAGCTTTACTTTA
1 AGTCATTAAACTATTTGAAAG-TTTTCATTA
*
26010767 AGTCATTAAACTATTCGAAAGTTTT
1 AGTCATTAAACTATTTGAAAGTTTT
26010792 TTTTTAAGTC
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
30 21 0.46
31 25 0.54
ACGTcount: A:0.35, C:0.10, G:0.13, T:0.42
Consensus pattern (30 bp):
AGTCATTAAACTATTTGAAAGTTTTCATTA
Found at i:26010771 original size:31 final size:30
Alignment explanation
Indices: 26010717--26010808 Score: 112
Period size: 31 Copynumber: 3.0 Consensus size: 30
26010707 GTCATTAAGG
*
26010717 TATTTGAAAGTTTTCATTAAGTCACTAAAT
1 TATTTGAAAGTTTTCTTTAAGTCACTAAAT
* * *
26010747 TATTTGAAAGCTTTACTTTAAGTCATTAAAC
1 TATTTGAAAG-TTTTCTTTAAGTCACTAAAT
* *
26010778 TATTCGAAAGTTTTTTTTTAAGTCACTAAAT
1 TATTTGAAAG-TTTTCTTTAAGTCACTAAAT
26010809 GATTAAGTTT
Statistics
Matches: 51, Mismatches: 10, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
30 10 0.20
31 41 0.80
ACGTcount: A:0.35, C:0.11, G:0.10, T:0.45
Consensus pattern (30 bp):
TATTTGAAAGTTTTCTTTAAGTCACTAAAT
Found at i:26010930 original size:65 final size:65
Alignment explanation
Indices: 26010841--26010971 Score: 217
Period size: 65 Copynumber: 2.0 Consensus size: 65
26010831 TCGACTAACG
* * * *
26010841 AGCTCCAAGCGACTATTCAACAATTGGTATAGTAGACTAGTATTCATCGATAAGTAGAAGAACAT
1 AGCTCCAAGCGACTATTCAACAATTAGTACACTAGACTAGTATTCATCAATAAGTAGAAGAACAT
*
26010906 AGCTCCAAGCGACTATTCAACAATTAGTACACTAGATTAGTATTCATCAATAAGTAGAAGAACAT
1 AGCTCCAAGCGACTATTCAACAATTAGTACACTAGACTAGTATTCATCAATAAGTAGAAGAACAT
26010971 A
1 A
26010972 CCTTAGATCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
65 61 1.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.26
Consensus pattern (65 bp):
AGCTCCAAGCGACTATTCAACAATTAGTACACTAGACTAGTATTCATCAATAAGTAGAAGAACAT
Found at i:26028199 original size:69 final size:68
Alignment explanation
Indices: 26028088--26028256 Score: 266
Period size: 69 Copynumber: 2.4 Consensus size: 68
26028078 TTCTCCAATA
* *
26028088 TATTAATCACCAATTTATTGAAAGTAAATATTAGTATATATTCCTATCGGGTTAGGTTTAAAGAA
1 TATTAATCA-CAATTTATTGAAAGTAAATATTAATATATATTCCTATCAGGTTAGGTTTAAAGAA
*
26028153 TTTT
65 CTTT
* *
26028157 TATTAATCATCAATTTATTGAAAGTAAATATTAATGTATATTCCTATCAGGTTAGGTTTAAAGTA
1 TATTAATCA-CAATTTATTGAAAGTAAATATTAATATATATTCCTATCAGGTTAGGTTTAAAGAA
26028222 CTTT
65 CTTT
26028226 TATTAATCACAAATTTATTGAAAGTAAATAT
1 TATTAATCAC-AATTTATTGAAAGTAAATAT
26028257 ATGAATTGAT
Statistics
Matches: 93, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
68 1 0.01
69 92 0.99
ACGTcount: A:0.38, C:0.08, G:0.11, T:0.42
Consensus pattern (68 bp):
TATTAATCACAATTTATTGAAAGTAAATATTAATATATATTCCTATCAGGTTAGGTTTAAAGAAC
TTT
Found at i:26032756 original size:15 final size:15
Alignment explanation
Indices: 26032736--26032766 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
26032726 ATATCAGGAA
*
26032736 AAGAAAAAGTAAAAC
1 AAGAAAAAGAAAAAC
26032751 AAGAAAAAGAAAAAC
1 AAGAAAAAGAAAAAC
26032766 A
1 A
26032767 TGAACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.77, C:0.06, G:0.13, T:0.03
Consensus pattern (15 bp):
AAGAAAAAGAAAAAC
Found at i:26038642 original size:46 final size:47
Alignment explanation
Indices: 26038592--26038683 Score: 114
Period size: 46 Copynumber: 2.0 Consensus size: 47
26038582 GTCATTTTTT
* *
26038592 ATTTTTTTTCCAAAAAACCATATTCA-AGCAATCTTTAAGTATGTTC
1 ATTTTTTTCCCAAAAAACCATATTCAGAGAAATCTTTAAGTATGTTC
*** * *
26038638 ATTTTTTTCCCCGCAAACTATATTCAGAGAAATCTTTAAGTGTGTT
1 ATTTTTTTCCCAAAAAACCATATTCAGAGAAATCTTTAAGTATGTT
26038684 TTAGAGAAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
46 21 0.55
47 17 0.45
ACGTcount: A:0.32, C:0.17, G:0.10, T:0.41
Consensus pattern (47 bp):
ATTTTTTTCCCAAAAAACCATATTCAGAGAAATCTTTAAGTATGTTC
Found at i:26043852 original size:73 final size:73
Alignment explanation
Indices: 26043771--26043994 Score: 430
Period size: 73 Copynumber: 3.1 Consensus size: 73
26043761 ATAACTAAAA
*
26043771 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCGTCAATAAACTCAAATTGGCAATTAAAA
1 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTCAAATTGGCAATTAAAA
26043836 GAAACTAT
66 GAAACTAT
26043844 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTCAAATTGGCAATTAAAA
1 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTCAAATTGGCAATTAAAA
26043909 GAAACTAT
66 GAAACTAT
*
26043917 AGCAAACGATAATCAAAATCAACTCTAGAACATGATCATCAATAAACTCAAATTGGCAATTAAAA
1 AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTCAAATTGGCAATTAAAA
26043982 GAAACTAT
66 GAAACTAT
26043990 AGCAA
1 AGCAA
26043995 CCCCAAGAAT
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 149 1.00
ACGTcount: A:0.50, C:0.19, G:0.10, T:0.21
Consensus pattern (73 bp):
AGCAAACGATCATCAAAATCAACTCTAGAACATGATCATCAATAAACTCAAATTGGCAATTAAAA
GAAACTAT
Found at i:26047843 original size:106 final size:106
Alignment explanation
Indices: 26047658--26047866 Score: 366
Period size: 106 Copynumber: 2.0 Consensus size: 106
26047648 TGCTAGTTAC
26047658 CCTACCATACTCATTCCAAATTCAACTTTCACGAGGTCAAAAAATTCTTAAGAAGCTTTTGAAGA
1 CCTACCATACTCATTCCAAATTCAACTTTCACGAGGTCAAAAAATTCTTAAGAAGCTTTTGAAGA
26047723 AGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGTTCA
66 AGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGTTCA
* * * *
26047764 CCTACCATACTTATTCCAAATTCAGCTTTCACGAGGTCAACAAATTCTTAAGAAGTTTTTGAATG
1 CCTACCATACTCATTCCAAATTCAACTTTCACGAGGTCAAAAAATTCTTAAGAAGCTTTTGAA-G
26047829 -AGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGT
65 AAGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGT
26047867 GCTATTGTGA
Statistics
Matches: 98, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
106 97 0.99
107 1 0.01
ACGTcount: A:0.39, C:0.18, G:0.13, T:0.30
Consensus pattern (106 bp):
CCTACCATACTCATTCCAAATTCAACTTTCACGAGGTCAAAAAATTCTTAAGAAGCTTTTGAAGA
AGTGAAATAAAAGAAAAATGTCATCCACATAGATTTGTTCA
Found at i:26048968 original size:13 final size:13
Alignment explanation
Indices: 26048950--26048975 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26048940 ATTTATTAAG
26048950 ATAGTCTAATAGC
1 ATAGTCTAATAGC
26048963 ATAGTCTAATAGC
1 ATAGTCTAATAGC
26048976 TTATTTGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31
Consensus pattern (13 bp):
ATAGTCTAATAGC
Found at i:26054654 original size:16 final size:17
Alignment explanation
Indices: 26054635--26054672 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 17
26054625 TGAAGAGTGA
*
26054635 AAAATATTTTAATT-TT
1 AAAATATATTAATTATT
26054651 AAAAT-TATTAATTATT
1 AAAATATATTAATTATT
26054667 AAAATA
1 AAAATA
26054673 ACATAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (17 bp):
AAAATATATTAATTATT
Found at i:26063460 original size:19 final size:20
Alignment explanation
Indices: 26063438--26063480 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26063428 AATTTTTTAT
26063438 ATTTTA-AAATTAAATAAT-A
1 ATTTTATAAATTAAA-AATGA
*
26063457 ATTTTATTAATTAAAAATGA
1 ATTTTATAAATTAAAAATGA
26063477 ATTT
1 ATTT
26063481 CAAATGATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (20 bp):
ATTTTATAAATTAAAAATGA
Found at i:26065929 original size:17 final size:17
Alignment explanation
Indices: 26065886--26065930 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
26065876 TATAATTAAA
26065886 AATTAAAAATTATTTAT
1 AATTAAAAATTATTTAT
* **
26065903 TATTTTAAATTATTTAT
1 AATTAAAAATTATTTAT
26065920 AATTAAAAATT
1 AATTAAAAATT
26065931 TCTAGTAATA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
AATTAAAAATTATTTAT
Found at i:26066368 original size:21 final size:21
Alignment explanation
Indices: 26066344--26066396 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
26066334 CATTGTTTCT
*
26066344 AATCTCACCGCTACAATATCC
1 AATCTCACCGCTACAATAACC
* *
26066365 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAATAACC
26066386 AATCTCACCGC
1 AATCTCACCGC
26066397 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAATAACC
Found at i:26066814 original size:21 final size:21
Alignment explanation
Indices: 26066789--26066828 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26066779 TTTATGTTAA
*
26066789 TTTAAAGTTTCAATTTTTTTT
1 TTTAAAGTTTCAATCTTTTTT
*
26066810 TTTAATGTTTCAATCTTTT
1 TTTAAAGTTTCAATCTTTT
26066829 AGATTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.07, G:0.05, T:0.65
Consensus pattern (21 bp):
TTTAAAGTTTCAATCTTTTTT
Found at i:26069151 original size:37 final size:38
Alignment explanation
Indices: 26069094--26069167 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 38
26069084 ATTAATTTTT
26069094 AAAATTAAAAAATTAAAAAATAATAAAAAATA-ATTTA
1 AAAATTAAAAAATTAAAAAATAATAAAAAATATATTTA
* * *
26069131 AAAATT-AAAAATTATTAAAATTATAAAACATATATTT
1 AAAATTAAAAAATTA-AAAAATAATAAAAAATATATTT
26069168 TTAATATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
36 8 0.25
37 20 0.62
38 4 0.12
ACGTcount: A:0.66, C:0.01, G:0.00, T:0.32
Consensus pattern (38 bp):
AAAATTAAAAAATTAAAAAATAATAAAAAATATATTTA
Found at i:26069157 original size:8 final size:8
Alignment explanation
Indices: 26069093--26069158 Score: 50
Period size: 8 Copynumber: 8.6 Consensus size: 8
26069083 AATTAATTTT
26069093 TAAAATTA
1 TAAAATTA
*
26069101 AAAAATTA
1 TAAAATTA
* *
26069109 AAAAATAA
1 TAAAATTA
*
26069117 TAAAA-AA
1 TAAAATTA
*
26069124 T-AATTTA
1 TAAAATTA
26069131 -AAAATTA
1 TAAAATTA
26069138 -AAAATTA
1 TAAAATTA
26069145 TTAAAATTA
1 -TAAAATTA
26069154 TAAAA
1 TAAAA
26069159 CATATATTTT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
6 2 0.04
7 16 0.33
8 23 0.48
9 7 0.15
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (8 bp):
TAAAATTA
Found at i:26071829 original size:19 final size:19
Alignment explanation
Indices: 26071807--26071845 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
26071797 TTTAGTTAGT
26071807 TTATATTTACCTTTTGGAC
1 TTATATTTACCTTTTGGAC
26071826 TTATATTTACCTTTTGGAC
1 TTATATTTACCTTTTGGAC
26071845 T
1 T
26071846 CGGGAAAGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.15, G:0.10, T:0.54
Consensus pattern (19 bp):
TTATATTTACCTTTTGGAC
Found at i:26071987 original size:23 final size:23
Alignment explanation
Indices: 26071944--26071987 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
26071934 CAAATTATCA
* *
26071944 AGAAAAACTTAAAGAGTAAAATT
1 AGAAAAACTTAAACAGGAAAATT
26071967 AGAAAAGA-TTAAACAGGAAAA
1 AGAAAA-ACTTAAACAGGAAAA
26071988 AGAAAACAGC
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
23 17 0.94
24 1 0.06
ACGTcount: A:0.64, C:0.05, G:0.16, T:0.16
Consensus pattern (23 bp):
AGAAAAACTTAAACAGGAAAATT
Found at i:26077541 original size:107 final size:108
Alignment explanation
Indices: 26077400--26077604 Score: 344
Period size: 107 Copynumber: 1.9 Consensus size: 108
26077390 TGGATTAAGA
*
26077400 TTTAAGAGGATATTTGGCTATTTGGTCAAGCGAAAAAAATCGAAACCCAGCACATTAGGGCACG-
1 TTTAAGAGGATATTTGGCTATTTGGTCAAGCGAAAAAAATCGAAACCCAACACATTAGGGCACGC
*
26077464 TTTCCTCGAATTTCCAAATGCAAAATATTGCCTTACTTTGAAAT
66 TTT-CTCGAATTCCCAAATGCAAAATATTGCCTTACTTTGAAAT
*
26077508 TTTAA-AGGATATTTGGCTATTTGGTTGAA-CGAAAAAAATCGAAACCCAACACATTAGGGCACG
1 TTTAAGAGGATATTTGGCTATTTGG-TCAAGCGAAAAAAATCGAAACCCAACACATTAGGGCACG
26077571 CTTTCTCGAATTCCCAAATGCAAAATATTGCCTT
65 CTTTCTCGAATTCCCAAATGCAAAATATTGCCTT
26077605 TATTTTTTTT
Statistics
Matches: 92, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
107 81 0.88
108 11 0.12
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (108 bp):
TTTAAGAGGATATTTGGCTATTTGGTCAAGCGAAAAAAATCGAAACCCAACACATTAGGGCACGC
TTTCTCGAATTCCCAAATGCAAAATATTGCCTTACTTTGAAAT
Found at i:26078481 original size:12 final size:13
Alignment explanation
Indices: 26078459--26078487 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
26078449 GTATATAAAT
26078459 TATAGAATATATA
1 TATAGAATATATA
26078472 TATA-AATATATA
1 TATAGAATATATA
26078484 TATA
1 TATA
26078488 TAAGCGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.41
Consensus pattern (13 bp):
TATAGAATATATA
Found at i:26078587 original size:16 final size:16
Alignment explanation
Indices: 26078566--26078620 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
26078556 ATATAATAAT
26078566 ATAATAATAAACAACA
1 ATAATAATAAACAACA
* *
26078582 ATAAT-AT-AA-TATA
1 ATAATAATAAACAACA
**
26078595 ATAATAATAAACAAGT
1 ATAATAATAAACAACA
26078611 ATAATAATAA
1 ATAATAATAA
26078621 TTATATTCAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
13 7 0.23
14 4 0.13
15 4 0.13
16 16 0.52
ACGTcount: A:0.65, C:0.05, G:0.02, T:0.27
Consensus pattern (16 bp):
ATAATAATAAACAACA
Found at i:26078588 original size:29 final size:28
Alignment explanation
Indices: 26078551--26078626 Score: 89
Period size: 29 Copynumber: 2.6 Consensus size: 28
26078541 TATATAGAAG
*
26078551 CAATTATATAATAATATAATAATAAACAA
1 CAATAATATAAT-ATATAATAATAAACAA
26078580 CAATAATATAATATAATAATAATAAACAA
1 CAATAATATAATAT-ATAATAATAAACAA
**
26078609 GTATAATAATAATTATAT
1 CAATAAT-ATAA-TATAT
26078627 TCATTAATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
28 2 0.05
29 30 0.73
30 6 0.15
31 3 0.07
ACGTcount: A:0.61, C:0.05, G:0.01, T:0.33
Consensus pattern (28 bp):
CAATAATATAATATATAATAATAAACAA
Found at i:26083112 original size:29 final size:30
Alignment explanation
Indices: 26083053--26083110 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
26083043 TCCGAGCCTT
*
26083053 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
26083083 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
26083111 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:26083340 original size:13 final size:13
Alignment explanation
Indices: 26083322--26083353 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26083312 TTTCCAGCAA
26083322 TTATGAATTTATT
1 TTATGAATTTATT
26083335 TTATGAATTTATT
1 TTATGAATTTATT
*
26083348 TGATGA
1 TTATGA
26083354 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:26083561 original size:50 final size:50
Alignment explanation
Indices: 26083448--26083689 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
26083438 ATTTGGGTAA
* * *
26083448 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
26083504 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
26083554 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
26083604 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
26083654 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
26083690 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:26083637 original size:100 final size:103
Alignment explanation
Indices: 26083448--26083697 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
26083438 ATTTGGGTAA
26083448 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
26083513 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
26083554 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
26083616 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
26083654 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
26083698 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:26090650 original size:29 final size:30
Alignment explanation
Indices: 26090591--26090648 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
26090581 TCCGAGCCTT
*
26090591 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
26090621 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
26090649 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:26090876 original size:13 final size:13
Alignment explanation
Indices: 26090858--26090889 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26090848 TTTCCAGCAA
26090858 TTATGAATTTATT
1 TTATGAATTTATT
26090871 TTATGAATTTATT
1 TTATGAATTTATT
*
26090884 TGATGA
1 TTATGA
26090890 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:26091129 original size:50 final size:50
Alignment explanation
Indices: 26090983--26091228 Score: 300
Period size: 50 Copynumber: 4.8 Consensus size: 50
26090973 ATTTGGGTAA
* *
26090983 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--G
*
26091039 AGAGGTCCC-TGTAAGACCATGT-TGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* *
26091087 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * * *
26091137 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GACG
** *
26091187 AGAAATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
26091229 TGTTATTATC
Statistics
Matches: 169, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
48 10 0.06
49 14 0.08
50 102 0.60
51 3 0.02
53 2 0.01
54 17 0.10
55 13 0.08
56 8 0.05
ACGTcount: A:0.26, C:0.23, G:0.30, T:0.21
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
Found at i:26091201 original size:100 final size:101
Alignment explanation
Indices: 26090987--26091229 Score: 341
Period size: 100 Copynumber: 2.4 Consensus size: 101
26090977 GGGTAAAGAG
*
26090987 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCCTGTA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCCTATA
* *
26091052 AGACCATGTTGGGACATGGCATGGGCACCGAGACGAGAG
63 AGACCATGTTGGGACATGGCATGGGCACCGACACGAGAA
* * *
26091091 GTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTATAAG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGT-CCCTATAAG
26091153 ACCATGTCTGGGACATGGCATGGGCACC-ATCACGAGAA
65 ACCATGT-TGGGACATGGCATGGGCACCGA-CACGAGAA
*
26091191 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
26091230 GTTATTATCA
Statistics
Matches: 127, Mismatches: 8, Indels: 11
0.87 0.05 0.08
Matches are distributed among these distances:
98 9 0.07
99 18 0.14
100 62 0.49
103 2 0.02
104 36 0.28
ACGTcount: A:0.26, C:0.23, G:0.29, T:0.21
Consensus pattern (101 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCTATAAGA
CCATGTTGGGACATGGCATGGGCACCGACACGAGAA
Found at i:26098126 original size:29 final size:30
Alignment explanation
Indices: 26098067--26098124 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
26098057 TCCGAGCCTT
*
26098067 GGGGCAAAAATGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTTA
* *
26098097 GGGGCAAAATTGTAATTTTGAAAAAGTT
1 GGGGCAAAAATGTAATTATGAAAAAGTT
26098125 AGAGTCGAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.03, G:0.24, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTTA
Found at i:26098354 original size:13 final size:13
Alignment explanation
Indices: 26098336--26098367 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26098326 TTTCCAGCAA
26098336 TTATGAATTTATT
1 TTATGAATTTATT
26098349 TTATGAATTTATT
1 TTATGAATTTATT
*
26098362 TGATGA
1 TTATGA
26098368 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:26098575 original size:50 final size:50
Alignment explanation
Indices: 26098462--26098703 Score: 297
Period size: 50 Copynumber: 4.7 Consensus size: 50
26098452 ATTTGGGTAA
* * *
26098462 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCA-CC--GAGA-C--G
*
26098518 AGAGGTCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
26098568 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
* * *
26098618 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
**
26098668 AGAACATCCCATGTAAGACCATGTCTGGGACATGGC
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGC
26098704 TTTGGCATGT
Statistics
Matches: 166, Mismatches: 18, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
49 1 0.01
50 91 0.55
51 29 0.17
52 1 0.01
53 3 0.02
55 2 0.01
56 39 0.23
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
Found at i:26098651 original size:100 final size:103
Alignment explanation
Indices: 26098462--26098711 Score: 364
Period size: 100 Copynumber: 2.4 Consensus size: 103
26098452 ATTTGGGTAA
26098462 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGTCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGTCCC
* *
26098527 CTGTAAGACCATGTCTGGGACATGGCATGGGCACCGA-GACG
63 CTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
* * *
26098568 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
26098630 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
66 TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
* *
26098668 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
26098712 GTTATTATCA
Statistics
Matches: 133, Mismatches: 8, Indels: 10
0.88 0.05 0.07
Matches are distributed among these distances:
99 1 0.01
100 51 0.38
101 39 0.29
105 2 0.02
106 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (103 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGTCCCCTA
TAAGACCATGTCTGGGACATGGCATGGGCACCATCACG
Found at i:26102064 original size:27 final size:27
Alignment explanation
Indices: 26102033--26102135 Score: 120
Period size: 27 Copynumber: 3.8 Consensus size: 27
26102023 CACCCTGGTC
*
26102033 GTGCCAAGGTGATTGGCGGCACCAAAG
1 GTGCCAAGGTGATTGGCGGCACCAATG
* **
26102060 GTGCCAATGTGATTGATGGCACCAATG
1 GTGCCAAGGTGATTGGCGGCACCAATG
*
26102087 GTGCCAAGG-GCATTGGCGGCACCAGTG
1 GTGCCAAGGTG-ATTGGCGGCACCAATG
*
26102114 GTGCCATA-CTGATTGGCGGCAC
1 GTGCCA-AGGTGATTGGCGGCAC
26102136 TACTCGTGTT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
26 1 0.02
27 61 0.95
28 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.35, T:0.19
Consensus pattern (27 bp):
GTGCCAAGGTGATTGGCGGCACCAATG
Found at i:26102391 original size:3 final size:3
Alignment explanation
Indices: 26102385--26102413 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
26102375 ATTATTATTA
26102385 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
26102414 AGTATTAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69
Consensus pattern (3 bp):
TTG
Found at i:26105499 original size:11 final size:11
Alignment explanation
Indices: 26105483--26105509 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26105473 GCTTATGCTT
26105483 AAATTGTATCC
1 AAATTGTATCC
26105494 AAATTGTATCC
1 AAATTGTATCC
26105505 AAATT
1 AAATT
26105510 AAGTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (11 bp):
AAATTGTATCC
Found at i:26109062 original size:10 final size:10
Alignment explanation
Indices: 26109049--26109205 Score: 82
Period size: 10 Copynumber: 15.6 Consensus size: 10
26109039 TTCTCTTCTC
26109049 CTTTCCTTTT
1 CTTTCCTTTT
26109059 CTTTCCTCCTTTTT
1 C-TT--TCC-TTTT
*
26109073 CTTTCTTTTTT
1 CTTTC-CTTTT
* *
26109084 CTCTCCTTTC
1 CTTTCCTTTT
26109094 CTCTT-CTTCTT
1 CT-TTCCTT-TT
*
26109105 CTTTCATTTT
1 CTTTCCTTTT
*
26109115 -TTTCTCTTCTC
1 CTTTC-CTT-TT
26109126 CTTTCCTTTT
1 CTTTCCTTTT
26109136 CTTTCCTTCTT
1 CTTTCCTT-TT
26109147 -TTT-C-TTT
1 CTTTCCTTTT
* *
26109154 CTTTCCTCTC
1 CTTTCCTTTT
26109164 CTTTCCTTTT
1 CTTTCCTTTT
26109174 CTTT-CTTTT
1 CTTTCCTTTT
26109183 CCTTT-C-TTT
1 -CTTTCCTTTT
26109192 CTTT-C-TTT
1 CTTTCCTTTT
26109200 CTTTCC
1 CTTTCC
26109206 CTCTCCTTCT
Statistics
Matches: 116, Mismatches: 14, Indels: 35
0.70 0.08 0.21
Matches are distributed among these distances:
7 2 0.02
8 16 0.14
9 15 0.13
10 45 0.39
11 24 0.21
12 4 0.03
13 5 0.04
14 5 0.04
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (10 bp):
CTTTCCTTTT
Found at i:26109077 original size:4 final size:4
Alignment explanation
Indices: 26109070--26109204 Score: 66
Period size: 4 Copynumber: 32.0 Consensus size: 4
26109060 TTTCCTCCTT
* *
26109070 TTTC TTTC TTT- TTTC TCTCC TTTCC TCTTC -TTC -TTC TTTC ATTTT
1 TTTC TTTC TTTC TTTC T-TTC TTT-C T-TTC TTTC TTTC TTTC -TTTC
* *
26109115 TTTC TCTTC -TCC TTTCC TTTTC TTTC CTTC -TT- TTTC TTTC TTTCC
1 TTTC T-TTC TTTC TTT-C -TTTC TTTC TTTC TTTC TTTC TTTC TTT-C
*
26109160 TCTCC TTTCC TTTTC TTTC TTTTCC TTTC TTTC TTTC TTTC TTTC
1 T-TTC TTT-C -TTTC TTTC -TTT-C TTTC TTTC TTTC TTTC TTTC
26109205 CCTCTCCTTC
Statistics
Matches: 104, Mismatches: 9, Indels: 36
0.70 0.06 0.24
Matches are distributed among these distances:
3 15 0.14
4 53 0.51
5 26 0.25
6 10 0.10
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (4 bp):
TTTC
Found at i:26109132 original size:5 final size:5
Alignment explanation
Indices: 26109124--26109205 Score: 68
Period size: 5 Copynumber: 17.6 Consensus size: 5
26109114 TTTTCTCTTC
* * * *
26109124 TCCTT TCCTT TTCTT TCC-T TCTTT TTCTT T-CTT TCCTC TCCTT TCCTT
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT
* *
26109172 TTCTT TCTTT TCCTT T-CTT T-CTT T-CTT T-CTT TCC
1 TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCCTT TCC
26109206 CTCTCCTTCT
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
4 23 0.37
5 40 0.63
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.67
Consensus pattern (5 bp):
TCCTT
Found at i:26109148 original size:77 final size:75
Alignment explanation
Indices: 26108990--26109197 Score: 254
Period size: 77 Copynumber: 2.8 Consensus size: 75
26108980 ATAATAAAAA
* * *
26108990 TTTCCTTTTTTTTC-TT-TTTTTTC-CTTCATTCC-C-TCTTCTTCTTCTTTTTTTCTCTTCTCC
1 TTTCCTTCTTTTTCTTTCTTTTTTCTCTCCTTTCCTCTTCTTCTTCTTCTTTTTTTCTCTTCTCC
26109050 TTTCCTTTTC
66 TTTCCTTTTC
*
26109060 TTTCCTCCTTTTTCTTTCTTTTTTCTCTCCTTTCCTCTTCTTCTTCTTTCATTTTTTTCTCTTCT
1 TTTCCTTCTTTTTCTTTCTTTTTTCTCTCCTTTCCTCTTCTTCTTC-TTC-TTTTTTTCTCTTCT
26109125 CCTTTCCTTTTC
64 CCTTTCCTTTTC
* * *
26109137 TTTCCTTCTTTTTCTTTC--TTTCCTCTCCTTTCCTTTTCTTTCTT-TTCCTTTCTTTCT-TTCT
1 TTTCCTTCTTTTTCTTTCTTTTTTCTCTCCTTTCCTCTTC-TTCTTCTT-CTTTTTTTCTCTTCT
26109198 TTCTTTCCCT
Statistics
Matches: 121, Mismatches: 8, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
70 12 0.10
71 2 0.02
72 7 0.06
73 11 0.09
74 11 0.09
75 27 0.22
76 8 0.07
77 43 0.36
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (75 bp):
TTTCCTTCTTTTTCTTTCTTTTTTCTCTCCTTTCCTCTTCTTCTTCTTCTTTTTTTCTCTTCTCC
TTTCCTTTTC
Found at i:26109213 original size:42 final size:43
Alignment explanation
Indices: 26109080--26109213 Score: 121
Period size: 43 Copynumber: 3.0 Consensus size: 43
26109070 TTTCTTTCTT
* * * *
26109080 TTTTCTCTCCTTTCCTCTTCTTCTTCTTTCATTTTTTTCTCTTCTCC
1 TTTTCTTTCTTTTCCT-TTC-T-TTCTTTC-TTTCTTTCTCCTCTCC
* * * *
26109127 TTTCCTTT-TCTTTCCTTCTTTTTCTTTCTTTC-CTCTCCTTTCC
1 TTTTCTTTCT-TTTCCTT-TCTTTCTTTCTTTCTTTCTCCTCTCC
26109170 TTTTCTTTCTTTTCCTTTCTTTCTTTCTTTCTTTC-CCTCTCC
1 TTTTCTTTCTTTTCCTTTCTTTCTTTCTTTCTTTCTCCTCTCC
26109212 TT
1 TT
26109214 CTCCCCCCAC
Statistics
Matches: 71, Mismatches: 12, Indels: 13
0.74 0.12 0.14
Matches are distributed among these distances:
42 21 0.30
43 24 0.34
44 4 0.06
45 7 0.10
46 2 0.03
47 13 0.18
ACGTcount: A:0.01, C:0.34, G:0.00, T:0.66
Consensus pattern (43 bp):
TTTTCTTTCTTTTCCTTTCTTTCTTTCTTTCTTTCTCCTCTCC
Found at i:26109277 original size:27 final size:27
Alignment explanation
Indices: 26109247--26109325 Score: 113
Period size: 27 Copynumber: 2.9 Consensus size: 27
26109237 CATTATAGGC
* *
26109247 TTGGTGCCGCCAATCCCCTTCGCACCA
1 TTGGTGCCGCCAATCACCTTGGCACCA
* * *
26109274 TTGGTGCCGTCAATCACATTGGCACCT
1 TTGGTGCCGCCAATCACCTTGGCACCA
26109301 TTGGTGCCGCCAATCACCTTGGCAC
1 TTGGTGCCGCCAATCACCTTGGCAC
26109326 GACCAAGGTG
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.16, C:0.37, G:0.22, T:0.25
Consensus pattern (27 bp):
TTGGTGCCGCCAATCACCTTGGCACCA
Found at i:26123076 original size:30 final size:30
Alignment explanation
Indices: 26122989--26123088 Score: 119
Period size: 30 Copynumber: 3.3 Consensus size: 30
26122979 GTCACCACGA
* * * *
26122989 ACCATTTTCCGTTACAGACGTAATGGAACT
1 ACCATTTTTCGTTACAGACTTAACGGAGCT
*
26123019 ACCATTTTTCATTACAGACTTAACGGAGCT
1 ACCATTTTTCGTTACAGACTTAACGGAGCT
* * *
26123049 CCCATTTTTCGTTATAGACTTAACGGAGTT
1 ACCATTTTTCGTTACAGACTTAACGGAGCT
*
26123079 TCCATTTTTC
1 ACCATTTTTC
26123089 ATCCCCCTAT
Statistics
Matches: 60, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (30 bp):
ACCATTTTTCGTTACAGACTTAACGGAGCT
Found at i:26135024 original size:16 final size:15
Alignment explanation
Indices: 26134976--26135025 Score: 57
Period size: 16 Copynumber: 3.2 Consensus size: 15
26134966 TATTTAATTT
26134976 AAAT-TTTATGAAAGTA
1 AAATATTTATGAAA--A
26134992 AAATATTTATGTAAAA
1 AAATATTTATG-AAAA
*
26135008 ATATATTTATGAAAA
1 AAATATTTATGAAAA
26135023 AAA
1 AAA
26135026 AAAGCACAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
15 6 0.20
16 15 0.50
17 6 0.20
18 3 0.10
ACGTcount: A:0.56, C:0.00, G:0.08, T:0.36
Consensus pattern (15 bp):
AAATATTTATGAAAA
Found at i:26136039 original size:22 final size:21
Alignment explanation
Indices: 26135993--26136040 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 21
26135983 AAAATAGTAG
26135993 TAATAATTAAATTATTTTAAAA
1 TAATAATTAAATTA-TTTAAAA
26136015 TAATAATTACAATTA-TTAAATA
1 TAATAATTA-AATTATTTAAA-A
26136037 TAAT
1 TAAT
26136041 TTAAAAATAC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.21
22 14 0.58
23 5 0.21
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (21 bp):
TAATAATTAAATTATTTAAAA
Found at i:26143054 original size:16 final size:15
Alignment explanation
Indices: 26143026--26143067 Score: 68
Period size: 15 Copynumber: 2.8 Consensus size: 15
26143016 AAATATACTA
26143026 GTTTAAG-TTTTTAT
1 GTTTAAGTTTTTTAT
26143040 GTTTTAAGTTTTTTAT
1 G-TTTAAGTTTTTTAT
26143056 GTTTAAGTTTTT
1 GTTTAAGTTTTT
26143068 AAAATATATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 1 0.04
15 17 0.65
16 8 0.31
ACGTcount: A:0.19, C:0.00, G:0.14, T:0.67
Consensus pattern (15 bp):
GTTTAAGTTTTTTAT
Found at i:26143268 original size:16 final size:16
Alignment explanation
Indices: 26143247--26143288 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
26143237 AATAATTTGA
*
26143247 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
26143263 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
26143279 TAGTTTTAAT
1 TAATTTTAAT
26143289 TTTATCAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:26144409 original size:11 final size:11
Alignment explanation
Indices: 26144389--26144430 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
26144379 TATTTTAATT
*
26144389 ATTTTTTATGA
1 ATTTTATATGA
*
26144400 ACTTTATATGA
1 ATTTTATATGA
*
26144411 ATTTTATATAA
1 ATTTTATATGA
26144422 ATTTTATAT
1 ATTTTATAT
26144431 AAAAATATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.57
Consensus pattern (11 bp):
ATTTTATATGA
Found at i:26146612 original size:3 final size:3
Alignment explanation
Indices: 26146604--26146634 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
26146594 GAAAGGAGTT
26146604 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG G
1 GTG GTG GTG GTG GTG GTG GTG GTG GTG GTG G
26146635 CATCAATGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.68, T:0.32
Consensus pattern (3 bp):
GTG
Found at i:26147314 original size:24 final size:24
Alignment explanation
Indices: 26147270--26147321 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
26147260 TTTCTAGAAA
* **
26147270 ATTTAGTATTTATTAGTATAATAT
1 ATTTAGCATTTATTAACATAATAT
*
26147294 ATTTAGCATTTATTAACATAATTT
1 ATTTAGCATTTATTAACATAATAT
26147318 ATTT
1 ATTT
26147322 GACTTACTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.06, T:0.54
Consensus pattern (24 bp):
ATTTAGCATTTATTAACATAATAT
Found at i:26151478 original size:47 final size:47
Alignment explanation
Indices: 26151427--26151566 Score: 244
Period size: 47 Copynumber: 3.0 Consensus size: 47
26151417 CCTAAGAATA
* *
26151427 CTATCTATACTTAGTATTGGACAACGGAGAAAATCAGGGAGATCGAT
1 CTATCTATACTTAGTATCGGACAACGAAGAAAATCAGGGAGATCGAT
*
26151474 CTATCTATACTTAGTATCGGACAACAAAGAAAATCAGGGAGATCGAT
1 CTATCTATACTTAGTATCGGACAACGAAGAAAATCAGGGAGATCGAT
*
26151521 CTATCTATACTTAGTATCGGACATCGAAGAAAATCAGGGAGATCGA
1 CTATCTATACTTAGTATCGGACAACGAAGAAAATCAGGGAGATCGA
26151567 ATTGCAATTA
Statistics
Matches: 88, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 88 1.00
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.24
Consensus pattern (47 bp):
CTATCTATACTTAGTATCGGACAACGAAGAAAATCAGGGAGATCGAT
Found at i:26155351 original size:10 final size:10
Alignment explanation
Indices: 26155338--26155362 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26155328 TTTTTTGATT
26155338 TTTTTAGTGC
1 TTTTTAGTGC
26155348 TTTTTAGTGC
1 TTTTTAGTGC
26155358 TTTTT
1 TTTTT
26155363 TGTTTTTTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.08, G:0.16, T:0.68
Consensus pattern (10 bp):
TTTTTAGTGC
Done.