Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D05
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 63323194
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 1953226 characters in sequence are not A, C, G, or T
File 70 of 199
Found at i:26157104 original size:18 final size:19
Alignment explanation
Indices: 26157083--26157141 Score: 61
Period size: 18 Copynumber: 3.2 Consensus size: 19
26157073 AACATTTTCT
26157083 TTAAATAATTA-AAAATAG
1 TTAAATAATTATAAAATAG
* *
26157101 TTAATTAATTATTATAATA-
1 TTAAATAATTA-TAAAATAG
26157120 TTAAAT-ATTAATAAAATAG
1 TTAAATAATT-ATAAAATAG
26157139 TTA
1 TTA
26157142 TTTATAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
18 19 0.58
19 9 0.27
20 5 0.15
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.42
Consensus pattern (19 bp):
TTAAATAATTATAAAATAG
Found at i:26157243 original size:20 final size:20
Alignment explanation
Indices: 26157207--26157244 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26157197 TAGGAATCTA
*
26157207 ATTAAATTAGTCCATTTACT
1 ATTAAATTAGTCAATTTACT
26157227 ATTAAA-TAGATCAATTTA
1 ATTAAATTAG-TCAATTTA
26157245 GTCCCCACAC
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.11, G:0.05, T:0.42
Consensus pattern (20 bp):
ATTAAATTAGTCAATTTACT
Found at i:26157510 original size:29 final size:29
Alignment explanation
Indices: 26157476--26157531 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
26157466 TTTGATTCTT
* *
26157476 TTTAATAGTATAAGAACTAAATTGATCCA
1 TTTAATACTAGAAGAACTAAATTGATCCA
* *
26157505 TTTAATACTAGAAGGACTAATTTGATC
1 TTTAATACTAGAAGAACTAAATTGATC
26157532 TAATTCCTAT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (29 bp):
TTTAATACTAGAAGAACTAAATTGATCCA
Found at i:26158149 original size:7 final size:7
Alignment explanation
Indices: 26158133--26158163 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
26158123 TTTTTCTTTC
*
26158133 TTTAACT
1 TTTAATT
26158140 TTTAATT
1 TTTAATT
26158147 TTTAATT
1 TTTAATT
26158154 TTTAATT
1 TTTAATT
26158161 TTT
1 TTT
26158164 CATCTGTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTAATT
Found at i:26159922 original size:2 final size:2
Alignment explanation
Indices: 26159917--26159944 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26159907 CTCCCTTCGT
26159917 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC
26159945 CATGTACACA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:26159980 original size:4 final size:4
Alignment explanation
Indices: 26159965--26160017 Score: 97
Period size: 4 Copynumber: 13.2 Consensus size: 4
26159955 TTTCTTTGTG
*
26159965 TGTA TATA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
26160013 TGTA T
1 TGTA T
26160018 ATAAAACTAG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
4 47 1.00
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (4 bp):
TGTA
Found at i:26161484 original size:2 final size:2
Alignment explanation
Indices: 26161477--26161510 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
26161467 ACATGATTTG
26161477 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
26161511 TTATATATAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:26163754 original size:24 final size:26
Alignment explanation
Indices: 26163691--26163756 Score: 66
Period size: 24 Copynumber: 2.6 Consensus size: 26
26163681 CTTATATAAA
*
26163691 AATAAATTTAAAAATATAATGTATATT
1 AATAAA-TTAAAAATATAATATATATT
* *
26163718 AA-AAATATTAAAATA-AATAT-TTTT
1 AATAAAT-TAAAAATATAATATATATT
26163742 AATAAATTAAAAATA
1 AATAAATTAAAAATA
26163757 CTATTAAAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
24 12 0.36
25 9 0.27
26 10 0.30
27 2 0.06
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.38
Consensus pattern (26 bp):
AATAAATTAAAAATATAATATATATT
Found at i:26167237 original size:33 final size:33
Alignment explanation
Indices: 26167200--26167271 Score: 144
Period size: 33 Copynumber: 2.2 Consensus size: 33
26167190 AGATTTTCAA
26167200 ATCTAATTTTCTTATTCATAAAAAATAAAGAGG
1 ATCTAATTTTCTTATTCATAAAAAATAAAGAGG
26167233 ATCTAATTTTCTTATTCATAAAAAATAAAGAGG
1 ATCTAATTTTCTTATTCATAAAAAATAAAGAGG
26167266 ATCTAA
1 ATCTAA
26167272 ATAATAAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (33 bp):
ATCTAATTTTCTTATTCATAAAAAATAAAGAGG
Found at i:26168358 original size:54 final size:54
Alignment explanation
Indices: 26168294--26168405 Score: 215
Period size: 54 Copynumber: 2.1 Consensus size: 54
26168284 TGACCAAAAC
*
26168294 ATAAACTTACTAATCGTTTAGTGACTTTAGGTGTAATTTACCCTTTATTTTATA
1 ATAAACTTACTAATAGTTTAGTGACTTTAGGTGTAATTTACCCTTTATTTTATA
26168348 ATAAACTTACTAATAGTTTAGTGACTTTAGGTGTAATTTACCCTTTATTTTATA
1 ATAAACTTACTAATAGTTTAGTGACTTTAGGTGTAATTTACCCTTTATTTTATA
26168402 ATAA
1 ATAA
26168406 GATAATATTA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 57 1.00
ACGTcount: A:0.32, C:0.12, G:0.11, T:0.46
Consensus pattern (54 bp):
ATAAACTTACTAATAGTTTAGTGACTTTAGGTGTAATTTACCCTTTATTTTATA
Found at i:26168599 original size:22 final size:23
Alignment explanation
Indices: 26168572--26168627 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 23
26168562 TTATACTTTA
*
26168572 ATTAAATATTCATA-TTTATATT
1 ATTAAATATTCATATTTTATAAT
*
26168594 ATTAAATATTTTATATTTTATAAT
1 ATTAAATA-TTCATATTTTATAAT
*
26168618 ATAAAATATT
1 ATTAAATATT
26168628 TTTACTAATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
22 8 0.28
23 7 0.24
24 14 0.48
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.54
Consensus pattern (23 bp):
ATTAAATATTCATATTTTATAAT
Found at i:26168608 original size:17 final size:17
Alignment explanation
Indices: 26168586--26168619 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
26168576 AATATTCATA
26168586 TTTATATTATTA-AATAT
1 TTTATATT-TTATAATAT
26168603 TTTATATTTTATAATAT
1 TTTATATTTTATAATAT
26168620 AAAATATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (17 bp):
TTTATATTTTATAATAT
Found at i:26170341 original size:31 final size:32
Alignment explanation
Indices: 26170313--26170391 Score: 126
Period size: 31 Copynumber: 2.5 Consensus size: 32
26170303 AATAAATATA
26170313 TTTTTTATTTTTAAAAATA-TTTTAAAATACT
1 TTTTTTATTTTTAAAAATATTTTTAAAATACT
26170344 TTTTTTATTTTT-AAAATATTTTTAAAATACT
1 TTTTTTATTTTTAAAAATATTTTTAAAATACT
26170375 TTTTTTAATTTTCTAAA
1 TTTTTT-ATTTT-TAAA
26170392 TTTTTTTGGT
Statistics
Matches: 44, Mismatches: 0, Indels: 5
0.90 0.00 0.10
Matches are distributed among these distances:
30 6 0.14
31 30 0.68
32 5 0.11
33 1 0.02
34 2 0.05
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (32 bp):
TTTTTTATTTTTAAAAATATTTTTAAAATACT
Found at i:26170347 original size:30 final size:30
Alignment explanation
Indices: 26170305--26170379 Score: 109
Period size: 31 Copynumber: 2.5 Consensus size: 30
26170295 CCGAATATAA
26170305 TAAATATA-TTTTTTATTTTTAAAA-ATATTT
1 TAAA-ATACTTTTTTATTTTTAAAATAT-TTT
26170335 TAAAATACTTTTTTTATTTTTAAAATATTTT
1 TAAAATAC-TTTTTTATTTTTAAAATATTTT
26170366 TAAAATACTTTTTT
1 TAAAATACTTTTTT
26170380 TAATTTTCTA
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
29 3 0.07
30 10 0.24
31 27 0.64
32 2 0.05
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.60
Consensus pattern (30 bp):
TAAAATACTTTTTTATTTTTAAAATATTTT
Found at i:26181916 original size:42 final size:42
Alignment explanation
Indices: 26181861--26182111 Score: 332
Period size: 42 Copynumber: 6.0 Consensus size: 42
26181851 GCTTACAGAA
**
26181861 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTATT
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
*
26181903 AAAAAACGCCGCTAAATG-TCATGTTCTTTAGCAGCGCTTAGG
1 AAAAAACGCCGCTAAA-GATCATGTTCTTTAGCGGCGCTTAGG
*
26181945 AAAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
*
26181987 AAAAAATGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
1 AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
* *
26182029 AAGAAAACGCCGCTAAA-AGTAATGTTCTATAGCGGCGCTT-GG
1 AA-AAAACGCCGCTAAAGA-TCATGTTCTTTAGCGGCGCTTAGG
* *
26182071 TCAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCGGCACTTA
1 -AAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCGGCGCTTA
26182112 TTTCACAAAC
Statistics
Matches: 191, Mismatches: 11, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
41 2 0.01
42 155 0.81
43 34 0.18
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.26
Consensus pattern (42 bp):
AAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGG
Found at i:26182568 original size:12 final size:12
Alignment explanation
Indices: 26182544--26182583 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
26182534 TTTTGAACCT
*
26182544 CTGCTTCTATCG
1 CTGCTTCTCTCG
*
26182556 CTGTTTCTCTCG
1 CTGCTTCTCTCG
*
26182568 CTGCTTCTCTTG
1 CTGCTTCTCTCG
26182580 CTGC
1 CTGC
26182584 GGCCTCTGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.03, C:0.35, G:0.17, T:0.45
Consensus pattern (12 bp):
CTGCTTCTCTCG
Found at i:26182594 original size:21 final size:21
Alignment explanation
Indices: 26182568--26182625 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
26182558 GTTTCTCTCG
* *
26182568 CTGCTTCTCTTGCTGCGGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
26182589 CTGCTTCTCTCACTGTAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
*
26182610 CTGCTTCCCTCGCTGC
1 CTGCTTCTCTCGCTGC
26182626 CTCTTCTGCT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.03, C:0.41, G:0.19, T:0.36
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:26188892 original size:115 final size:115
Alignment explanation
Indices: 26188683--26188921 Score: 397
Period size: 115 Copynumber: 2.1 Consensus size: 115
26188673 AAATATTTCT
26188683 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
1 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
** * ** *
26188748 GAAATTTGTGGTGTTTCTTCGTAAAACGCCAGTAATATATCACTTTTAGC
66 GAAATTTGCAGCGTTTCTTCACAAAACGCCAGTAATATATCACCTTTAGC
*
26188798 GGCGTTTTTCAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
1 GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
* *
26188863 GGAATTTGCAGCGTTTCTTCACAAGACGCCAGTAATATATCACCTTTAGC
66 GAAATTTGCAGCGTTTCTTCACAAAACGCCAGTAATATATCACCTTTAGC
26188913 GGCGTTTTT
1 GGCGTTTTT
26188922 TCTGAAGCGC
Statistics
Matches: 115, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
115 115 1.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (115 bp):
GGCGTTTTTAAAATGCGCCACTAAAAGAAAACAACAAAACGGCACCGTCTTTGTTACAGTTAAAG
GAAATTTGCAGCGTTTCTTCACAAAACGCCAGTAATATATCACCTTTAGC
Found at i:26189424 original size:14 final size:14
Alignment explanation
Indices: 26189413--26189452 Score: 64
Period size: 14 Copynumber: 2.9 Consensus size: 14
26189403 TCTAAAACTC
26189413 TAAACTCTAAACCG
1 TAAACTCTAAACCG
*
26189427 TAAACCCTAAACCG
1 TAAACTCTAAACCG
26189441 TAAAC-CTAAACC
1 TAAACTCTAAACC
26189453 ACATTTTTTG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
13 7 0.28
14 18 0.72
ACGTcount: A:0.45, C:0.33, G:0.05, T:0.17
Consensus pattern (14 bp):
TAAACTCTAAACCG
Found at i:26189431 original size:21 final size:20
Alignment explanation
Indices: 26189407--26189452 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
26189397 TCCAAATCTA
*
26189407 AAACTCTAAACTC-TAAACCGT
1 AAACCCTAAAC-CGTAAACC-T
26189428 AAACCCTAAACCGTAAACCT
1 AAACCCTAAACCGTAAACCT
26189448 AAACC
1 AAACC
26189453 ACATTTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 7 0.30
21 16 0.70
ACGTcount: A:0.46, C:0.33, G:0.04, T:0.17
Consensus pattern (20 bp):
AAACCCTAAACCGTAAACCT
Found at i:26189656 original size:43 final size:43
Alignment explanation
Indices: 26189597--26189685 Score: 133
Period size: 43 Copynumber: 2.1 Consensus size: 43
26189587 AGAAATAAAT
* * *
26189597 GCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGACGCTTCTACCACAAAC
* *
26189640 GCCGGTAAATACCATGACCTTTAGCGACGCTTCTACCACAAAC
1 GCCGCTAAAGACCATGACCTTTAGCGACGCTTCTACCACAAAC
26189683 GCC
1 GCC
26189686 ATTATAGGTC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.27, C:0.35, G:0.18, T:0.20
Consensus pattern (43 bp):
GCCGCTAAAGACCATGACCTTTAGCGACGCTTCTACCACAAAC
Found at i:26191651 original size:5 final size:5
Alignment explanation
Indices: 26191607--26191633 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
26191597 GATTCTTGTT
26191607 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
26191634 GGTAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:26193934 original size:107 final size:107
Alignment explanation
Indices: 26193809--26194024 Score: 324
Period size: 107 Copynumber: 2.0 Consensus size: 107
26193799 GCAAAAAATT
* ** * *
26193809 TTTCATTTTGAACAAAATGACGTCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATAT
1 TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTATAA
* * *
26193874 ATTGATTTGTTTTTTGCGGCGTTTTTATAAAAAACGCCGCTA
66 ATTGATTTATTTTTTGCGGCGTTTTAAAAAAAAACGCCGCTA
* *
26193916 TTTCATTTTCAGCAAAATGACACCGTTTTGTTATGCTAAAAAATTTTTATTTTATTTTTTTATAA
1 TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTATAA
* *
26193981 ATTGATTTATTTTTTGTGGCGTTTTAAAAAAAAATGCCGCTA
66 ATTGATTTATTTTTTGCGGCGTTTTAAAAAAAAACGCCGCTA
26194023 TT
1 TT
26194025 GCTTACCTTT
Statistics
Matches: 97, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
107 97 1.00
ACGTcount: A:0.28, C:0.11, G:0.12, T:0.49
Consensus pattern (107 bp):
TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTATAA
ATTGATTTATTTTTTGCGGCGTTTTAAAAAAAAACGCCGCTA
Found at i:26194353 original size:245 final size:247
Alignment explanation
Indices: 26193897--26194391 Score: 818
Period size: 245 Copynumber: 2.0 Consensus size: 247
26193887 TTGCGGCGTT
* *
26193897 TTTATAAAAAACGCCGCTATTTCATTTTCAGCAAAATGACACCGTTTTGTTATGCTAAAAAATTT
1 TTTATAAAAAACGCCGCTATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAAATT
* ** *
26193962 TTATTTTATTTTTTTATAAATTGATTTATTTTTTGTGGCGTTTTAAAAAAAAATGCCGCTATTGC
66 TTATTTTATTTTTTTATAAATTAATTTATTTTTTGCAGCGTTTTAAAAAAAAACGCCGCTATTGC
*
26194027 TTACCTTTAGCGGCGGTTTTTTGAGAAACGCCGCAAAAAAATTTTCATTTTGAACAAAATGACGT
131 TTACCTTTAGCGGCGGTTTTTTGAGAAACGCCGCAAAAAAATTTTCATTTTGAACAAAATGACGC
*
26194092 CGTTTTACTATGCTAAAAATTTTTTATTTTATTTTTTTTATATATTGATTTG
196 CGTTTTACTATGCTAAAAATTTTTTATTTTATTTTTTATATATATTGATTTG
26194144 TTTA-AAAAAACGCCGCTATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAAATT
1 TTTATAAAAAACGCCGCTATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAAATT
****
26194208 TTATTTTA-TTTTTTATAAATTAATTTATTTTTTGCAGCGTTTT-TTTTAAAACGCCGCTATTGC
66 TTATTTTATTTTTTTATAAATTAATTTATTTTTTGCAGCGTTTTAAAAAAAAACGCCGCTATTGC
*
26194271 TTACCTTTAGCGGC-GTTTTTATGAGAAACGCCGCAAAAAATTTTTTCATTTTGAACAAAATGAC
131 TTACCTTTAGCGGCGGTTTTT-TGAGAAACGCCGCAAAAAA-ATTTTCATTTTGAACAAAATGAC
*
26194335 GCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATATATATTGATTTG
194 GCCGTTTTACTATGCTAAAAATTTTTTATTTTATTTTTTATATATATTGATTTG
26194389 TTT
1 TTT
26194392 TTAGTGGCGT
Statistics
Matches: 232, Mismatches: 14, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
243 6 0.03
244 48 0.21
245 108 0.47
246 66 0.28
247 4 0.02
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (247 bp):
TTTATAAAAAACGCCGCTATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAAATT
TTATTTTATTTTTTTATAAATTAATTTATTTTTTGCAGCGTTTTAAAAAAAAACGCCGCTATTGC
TTACCTTTAGCGGCGGTTTTTTGAGAAACGCCGCAAAAAAATTTTCATTTTGAACAAAATGACGC
CGTTTTACTATGCTAAAAATTTTTTATTTTATTTTTTATATATATTGATTTG
Found at i:26194465 original size:114 final size:114
Alignment explanation
Indices: 26194276--26194500 Score: 400
Period size: 114 Copynumber: 2.0 Consensus size: 114
26194266 ATTGCTTACC
26194276 TTTAGCGGCGTTTTTATGAGAAACGCCGCAAAAAATTTTTTCATTTTGAACAAAATGACGCCGTT
1 TTTAGCGGCGTTTTTATGAGAAACGCCGCAAAAAATTTTTTCATTTTGAACAAAATGACGCCGTT
26194341 TTGCTATGCTAAAAATTTTTTA-TTTTATTTTTTATATATATTGATTTGTT
66 TTGCTATGCTAAAAATTTTTTATTTTTATTTTTTATA-A-ATTGATTTGTT
* *
26194391 TTTAGTGGCGTTTTTATGAGAAACGCCGC-AAAAATTTTTTCATTTTGAACAAAATGACGTCGTT
1 TTTAGCGGCGTTTTTATGAGAAACGCCGCAAAAAATTTTTTCATTTTGAACAAAATGACGCCGTT
26194455 TTGCTATGCTAAAAATTTTTTATTTTTATTTTTTATAAATTGATTT
66 TTGCTATGCTAAAAATTTTTTATTTTTATTTTTTATAAATTGATTT
26194501 CTTATAAAAA
Statistics
Matches: 107, Mismatches: 2, Indels: 4
0.95 0.02 0.04
Matches are distributed among these distances:
113 8 0.07
114 57 0.53
115 42 0.39
ACGTcount: A:0.29, C:0.11, G:0.14, T:0.47
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTATGAGAAACGCCGCAAAAAATTTTTTCATTTTGAACAAAATGACGCCGTT
TTGCTATGCTAAAAATTTTTTATTTTTATTTTTTATAAATTGATTTGTT
Found at i:26195275 original size:267 final size:271
Alignment explanation
Indices: 26194952--26195515 Score: 845
Period size: 267 Copynumber: 2.1 Consensus size: 271
26194942 AATATATTTG
* * *
26194952 ATTTATTATTATCTATTTTACAATTATATGATAACATATTTAAAATATAAATTAAAAAATAATTA
1 ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
* ** * * * * *
26195017 ATTTAAATTCAAAACCTTAACTCGATCCCTGAATCCCTAAACCT-T-AAATCCC-TAACT-CTTA
66 ATCTAAACCCAAAACCCTAACTCGACCCCTGAATCCCT-AACATGTCAAA-CCCTTAAATCCCTA
* * *
26195078 ACCC-CTAACCCCTAAACCTTAAATACCAACCCTTAATTCATAATCCCTAAATCCATAC-TCCCT
129 ACCCTCTAACCCCTAAACCTTAAATACCAACCCCTAATCCATAATCCCTAAACCCATACTTCCCT
** * *
26195141 AAACCTTAAAATATGAACTCCTAAACCGATTTTAAATCTTAAATTAATCATATACCCTAAACTAA
194 AAACCTTAAAATATGAACTCCTAAACCGACCTTAAATCTTAAATAAATCATATACCCTAAACCAA
26195206 AAACCCTAAACAA
259 AAACCCTAAACAA
26195219 ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
1 ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
* *
26195284 ATCTAAACCCAAAACCCTAACTCGACCCCTGAATCCCTAGCATGTCTAACCCTTAAATCCCTAAC
66 ATCTAAACCCAAAACCCTAACTCGACCCCTGAATCCCTAACATGTCAAACCCTTAAATCCCTAAC
* *
26195349 CCTCTAACCTCTAAACCTTAAATCCCAACCCCTAATCCATAATCCCTAAACCCATACTTCCCTAA
131 CCTCTAACCCCTAAACCTTAAATACCAACCCCTAATCCATAATCCCTAAACCCATACTTCCCTAA
* *
26195414 ACCTTAAAATATGAACTCTTAAACCGGCCTTAAATCTTAAATAAATCATATACCCTAAACCAAAA
196 ACCTTAAAATATGAACTCCTAAACCGACCTTAAATCTTAAATAAATCATATACCCTAAACCAAAA
26195479 ACCCTAAACAA
261 ACCCTAAACAA
26195490 ATTTATT-TTATCTCTTTTACAATTAT
1 ATTTATTATTATCTCTTTTACAATTAT
26195516 TTTAAATAAT
Statistics
Matches: 267, Mismatches: 24, Indels: 9
0.89 0.08 0.03
Matches are distributed among these distances:
266 3 0.01
267 99 0.37
268 6 0.02
269 7 0.03
270 68 0.25
271 84 0.31
ACGTcount: A:0.41, C:0.25, G:0.02, T:0.31
Consensus pattern (271 bp):
ATTTATTATTATCTCTTTTACAATTATATAAGAACATATTTAAAATATAAATTAAAAAATAATTA
ATCTAAACCCAAAACCCTAACTCGACCCCTGAATCCCTAACATGTCAAACCCTTAAATCCCTAAC
CCTCTAACCCCTAAACCTTAAATACCAACCCCTAATCCATAATCCCTAAACCCATACTTCCCTAA
ACCTTAAAATATGAACTCCTAAACCGACCTTAAATCTTAAATAAATCATATACCCTAAACCAAAA
ACCCTAAACAA
Found at i:26195347 original size:15 final size:15
Alignment explanation
Indices: 26195329--26195379 Score: 54
Period size: 15 Copynumber: 3.5 Consensus size: 15
26195319 CCTAGCATGT
26195329 CTAACCCTTAAATCC
1 CTAACCCTTAAATCC
26195344 CTAACCCTCT-AA-CC
1 CTAACCCT-TAAATCC
*
26195358 TCTAAACCTTAAATCC
1 -CTAACCCTTAAATCC
26195374 C-AACCC
1 CTAACCC
26195380 CTAATCCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 9
0.73 0.05 0.22
Matches are distributed among these distances:
14 7 0.23
15 20 0.67
16 3 0.10
ACGTcount: A:0.33, C:0.43, G:0.00, T:0.24
Consensus pattern (15 bp):
CTAACCCTTAAATCC
Found at i:26195368 original size:30 final size:28
Alignment explanation
Indices: 26195328--26195383 Score: 85
Period size: 30 Copynumber: 1.9 Consensus size: 28
26195318 CCCTAGCATG
*
26195328 TCTAACCCTTAAATCCCTAACCCTCTAACC
1 TCTAAACCTTAAATCCC-AACCC-CTAACC
26195358 TCTAAACCTTAAATCCCAACCCCTAA
1 TCTAAACCTTAAATCCCAACCCCTAA
26195384 TCCATAATCC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 4 0.16
29 5 0.20
30 16 0.64
ACGTcount: A:0.34, C:0.41, G:0.00, T:0.25
Consensus pattern (28 bp):
TCTAAACCTTAAATCCCAACCCCTAACC
Found at i:26195972 original size:73 final size:73
Alignment explanation
Indices: 26195804--26195981 Score: 200
Period size: 73 Copynumber: 2.5 Consensus size: 73
26195794 ATGAGCATTA
* * * *
26195804 GCGGCGCTTTCTT-AAAAACGCCGCTAAATCCGCAAAAGCTCAGAAAACGGCGTCGTTGGGCTCA
1 GCGGCGCGTTCTTAAAAAACGCCGCTAAATCCCCAAAAGCTAACAAAACGGCGTCGTTGGGCTCA
* *
26195868 GGTTTTTT
66 GATTTCTT
* * * *
26195876 GCGGCGCGTTCTTAAAAAACGCCGCTAAATCCCCGAAAGCTAACAAAACGGTGTCGTTGGGTTTA
1 GCGGCGCGTTCTTAAAAAACGCCGCTAAATCCCCAAAAGCTAACAAAACGGCGTCGTTGGGCTCA
26195941 TGATTTCTT
66 -GATTTCTT
* * *
26195950 GC-G-GCGTTTTTGAAGAAGCGCCGCTAAATCCC
1 GCGGCGCGTTCTT-AAAAAACGCCGCTAAATCCC
26195982 TGAACATTAG
Statistics
Matches: 90, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
72 19 0.21
73 63 0.70
74 8 0.09
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (73 bp):
GCGGCGCGTTCTTAAAAAACGCCGCTAAATCCCCAAAAGCTAACAAAACGGCGTCGTTGGGCTCA
GATTTCTT
Found at i:26196031 original size:187 final size:187
Alignment explanation
Indices: 26195709--26196092 Score: 510
Period size: 187 Copynumber: 2.0 Consensus size: 187
26195699 AGCATTTTTG
* *
26195709 GCCGCTAAATCCCTAAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCAAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGAATTTCTTGCGGCGCTTTC
* * *
26195774 TCAAAAACGCCGTTAAAACCATGAGCATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCGCAA
66 TCAAAAACGCCGCTAAAACCATGAACATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAA
* *
26195839 AAGCTCAGAAAACGGCGTCGTTGGGC-TCAGGTTTTTTGCGGCGCGTTCTTA-AAAAAC
131 AAGCTCACAAAACGGCGTCGTTGGGCTTAAGGTTTTTTGCGGCGC-TT-TTACAAAAAC
* * *
26195896 GCCGCTAAATCCCCGAAAGCT-AACAAAACGGTGTCGTTGGGTTTATG-ATTTCTTGCGGCG-TT
1 GCCGCTAAATCCCCAAAAGCTCAA-AAAACGGCGTCGTTGGGCTTA-GAATTTCTTGCGGCGCTT
* * * * *
26195958 TTTGAAGAAGCGCCGCTAAATCCCTGAACATTAGCGGCGCTTTAC-TAAAAACGCCGCTAAATCC
64 TCTCAA-AAACGCCGCTAAAACCATGAACATTAGCGGCGCTTT-CTTAAAAACGCCGCTAAATCC
* *
26196022 CCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAAGTTTTTTTGCGGCGCTTTTATCAAAAAC
127 CCAAAAGCTCACAAAACGGCGTCGTTGGGCTTAAGGTTTTTTGCGGCGCTTTTA-CAAAAAC
26196084 GCCGCTAAA
1 GCCGCTAAA
26196093 GCCCTGAGCA
Statistics
Matches: 173, Mismatches: 17, Indels: 13
0.85 0.08 0.06
Matches are distributed among these distances:
186 11 0.06
187 129 0.75
188 33 0.19
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (187 bp):
GCCGCTAAATCCCCAAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGAATTTCTTGCGGCGCTTTC
TCAAAAACGCCGCTAAAACCATGAACATTAGCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCAA
AAGCTCACAAAACGGCGTCGTTGGGCTTAAGGTTTTTTGCGGCGCTTTTACAAAAAC
Found at i:26196142 original size:115 final size:114
Alignment explanation
Indices: 26195876--26196204 Score: 412
Period size: 115 Copynumber: 2.9 Consensus size: 114
26195866 CAGGTTTTTT
* *
26195876 GCGGCGCGTTCTTAAAAAACGCCGCTAAATCCCCGAAAGCTAACAAAACGGTGTCGTTGGGTTTA
1 GCGGCGCTTTCTT-AAAAACGCCGCTAAATCCCCGAAAGCTAACAAAACGGTGTCGTTGGGCTTA
* * * * *
26195941 TGATTTCTTGCGGCG-TTTTTGAAGAAGCGCCGCTAAATCCCTGAACATTA
65 AGATTTTTTGCGGCGCTTTTTCAA-AAACGCCGCTAAAGCCCTGAACATTA
* *
26195991 GCGGCGCTTTAC-TAAAAACGCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTA
1 GCGGCGCTTT-CTTAAAAACGCCGCTAAATCCCCGAAAGCTAACAAAACGGTGTCGTTGGGCTTA
* *
26196055 AGTTTTTTTGCGGCGCTTTTATCAAAAACGCCGCTAAAGCCCTGAGCATTA
65 AGATTTTTTGCGGCGCTTTT-TCAAAAACGCCGCTAAAGCCCTGAACATTA
* * * **** *
26196106 GTGGCGCTTTCTTAAAAACGCCACTAAACCCCCGAAAGCTTGGGAAACGGTATCGTTGGGCTT-A
1 GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAACAAAACGGTGTCGTTGGGCTTAA
* *
26196170 GGTTTTTTGCGGCGCTTTCTCAAAAACGCCGCTAA
66 GATTTTTTGCGGCGCTTTTTCAAAAACGCCGCTAA
26196205 TGCTTATTTT
Statistics
Matches: 188, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
113 16 0.09
114 79 0.42
115 89 0.47
116 4 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (114 bp):
GCGGCGCTTTCTTAAAAACGCCGCTAAATCCCCGAAAGCTAACAAAACGGTGTCGTTGGGCTTAA
GATTTTTTGCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAACATTA
Found at i:26196454 original size:20 final size:21
Alignment explanation
Indices: 26196416--26196465 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 21
26196406 TCTTCAATTT
26196416 CTAAACT-AAACCCTAAAACC
1 CTAAACTCAAACCCTAAAACC
* *
26196436 TTAAACTCAAA-CCTTAAACC
1 CTAAACTCAAACCCTAAAACC
*
26196456 CCAAACTCAA
1 CTAAACTCAA
26196466 TCTCTAACAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 22 0.88
21 3 0.12
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.18
Consensus pattern (21 bp):
CTAAACTCAAACCCTAAAACC
Found at i:26197369 original size:72 final size:71
Alignment explanation
Indices: 26197275--26197456 Score: 188
Period size: 72 Copynumber: 2.5 Consensus size: 71
26197265 CGAAAGTTGA
* *
26197275 GAAAACGACACCGTTTGGCTTAGGTTTTTTAGCGGCGCTTCCCCAAAAACGCCGCTAAAT-CCCA
1 GAAAACGGCACCGTTTGGCTTAGG-TTTTTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCCA
26197339 AAAACTAC
65 AAAACT-C
* ** * * ** *
26197347 GGAAACGGCACCGTTTGGCTTAGGATGATTAGTGGCGCTTGATTAAAAACGTCGCTAAATCCCCA
1 GAAAACGGCACCGTTTGGCTTAGG-TTTTTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCCA
*
26197412 AAAGCTC
65 AAAACTC
** * *
26197419 GAAAACGGCGTCGTTAGGCTTTGGTTTTT-GCGGCGCTT
1 GAAAACGGCACCGTTTGGCTTAGGTTTTTAGCGGCGCTT
26197457 TCTAGAAAAC
Statistics
Matches: 89, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
70 8 0.09
71 3 0.03
72 69 0.78
73 9 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (71 bp):
GAAAACGGCACCGTTTGGCTTAGGTTTTTAGCGGCGCTTCACCAAAAACGCCGCTAAATCCCCAA
AAACTC
Found at i:26214742 original size:14 final size:15
Alignment explanation
Indices: 26214711--26214749 Score: 53
Period size: 16 Copynumber: 2.6 Consensus size: 15
26214701 CAAACAACAT
26214711 AATATTTAATAATTAA
1 AATATTTAATAA-TAA
*
26214727 AATTTTTAATAA-AA
1 AATATTTAATAATAA
26214741 AATATTTAA
1 AATATTTAA
26214750 ATTATAAGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 10 0.48
16 11 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
AATATTTAATAATAA
Found at i:26219252 original size:20 final size:20
Alignment explanation
Indices: 26219227--26219268 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
26219217 ACTTTCTAAA
26219227 TATATGTTTCTTAATTGACT
1 TATATGTTTCTTAATTGACT
26219247 TATATGTTTCTTAATTGACT
1 TATATGTTTCTTAATTGACT
26219267 TA
1 TA
26219269 ATAACAAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.10, G:0.10, T:0.55
Consensus pattern (20 bp):
TATATGTTTCTTAATTGACT
Found at i:26220748 original size:10 final size:10
Alignment explanation
Indices: 26220733--26220772 Score: 53
Period size: 10 Copynumber: 3.7 Consensus size: 10
26220723 TAATTGAAGA
26220733 TAAATAAAAT
1 TAAATAAAAT
26220743 TAAATAAAAT
1 TAAATAAAAT
26220753 TAAATCCTAAAAT
1 TAAA---TAAAAT
26220766 TAAATAA
1 TAAATAA
26220773 TCCTTAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
10 17 0.63
13 10 0.37
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (10 bp):
TAAATAAAAT
Found at i:26226147 original size:25 final size:24
Alignment explanation
Indices: 26226102--26226148 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
26226092 TCGCTCTCTT
*
26226102 TTTTCCTTTTTTCTTTCTTTTCGG
1 TTTTCCTTTTTTCTTTATTTTCGG
*
26226126 TTTTCTTTTTTTCTTTTATTTTC
1 TTTTCCTTTTTTC-TTTATTTTC
26226149 TCTAATCCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 12 0.60
25 8 0.40
ACGTcount: A:0.02, C:0.17, G:0.04, T:0.77
Consensus pattern (24 bp):
TTTTCCTTTTTTCTTTATTTTCGG
Found at i:26228421 original size:24 final size:24
Alignment explanation
Indices: 26228394--26228439 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26228384 CTAATTAAAT
* *
26228394 TTTATAAATAATTAATATTTATTG
1 TTTAAAAATAATTAAAATTTATTG
*
26228418 TTTAAAAATATTTAAAATTTAT
1 TTTAAAAATAATTAAAATTTAT
26228440 ATTTCATATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.02, T:0.52
Consensus pattern (24 bp):
TTTAAAAATAATTAAAATTTATTG
Found at i:26230510 original size:28 final size:29
Alignment explanation
Indices: 26230476--26230534 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 29
26230466 CATTCACATG
*
26230476 TTTTAAAGCTTTTCATA-TTTTTCTGAAT
1 TTTTAAAGCTTTTCAGATTTTTTCTGAAT
** *
26230504 TTTTAAATTTTTTGAGATTTTTTCTGAAT
1 TTTTAAAGCTTTTCAGATTTTTTCTGAAT
26230533 TT
1 TT
26230535 GTTTTGATAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
28 13 0.50
29 13 0.50
ACGTcount: A:0.24, C:0.07, G:0.08, T:0.61
Consensus pattern (29 bp):
TTTTAAAGCTTTTCAGATTTTTTCTGAAT
Found at i:26231695 original size:17 final size:17
Alignment explanation
Indices: 26231652--26231689 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
26231642 GTTATTTGTC
*
26231652 TATTAATTT-TTTTAAA
1 TATTTATTTATTTTAAA
*
26231668 TATTTATTTATTTTACA
1 TATTTATTTATTTTAAA
26231685 TATTT
1 TATTT
26231690 TATTATACAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTATTTATTTTAAA
Found at i:26247426 original size:43 final size:42
Alignment explanation
Indices: 26247354--26247556 Score: 205
Period size: 43 Copynumber: 4.7 Consensus size: 42
26247344 TGATAAGTGC
* *
26247354 TTTCGTGTAAGACCACGTCTAGGGCGATGGCATCGATTTATAT
1 TTTCGTGTAAGACCACGTCT-GGACGATGGCATCGATTTGTAT
* * *
26247397 TTTCATGTAAGACCACGTCTGTGATGATGGCATCAATTTGTAT
1 TTTCGTGTAAGACCACGTCTG-GACGATGGCATCGATTTGTAT
*
26247440 TTTCGTGTAAGACCACGTCTGGGACGATGGCATCGATATGTAT
1 TTTCGTGTAAGACCACGTCT-GGACGATGGCATCGATTTGTAT
* * * *
26247483 TTTTGAGTAAGACC-CTGTCTGGGAC-AGTGGCATCGATGTGCGA-
1 TTTCGTGTAAGACCAC-GTCT-GGACGA-TGGCATCGATTTG-TAT
* *
26247526 TTACATGTAAGACCACGTCTGGGACGATGGC
1 TTTCGTGTAAGACCACGTCT-GGACGATGGC
26247557 GTTGTATGAA
Statistics
Matches: 136, Mismatches: 17, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
42 3 0.02
43 129 0.95
44 4 0.03
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (42 bp):
TTTCGTGTAAGACCACGTCTGGACGATGGCATCGATTTGTAT
Found at i:26247503 original size:86 final size:86
Alignment explanation
Indices: 26247354--26247556 Score: 238
Period size: 86 Copynumber: 2.4 Consensus size: 86
26247344 TGATAAGTGC
26247354 TTTCGTGTAAGACCACGTCTAGGG-CGATGGCATCGATTTATATTTTCATGTAAGACCACGTCTG
1 TTTCGTGTAAGACCACGTCT-GGGACGATGGCATCGATTTATATTTTCATGTAAGACCACGTCTG
* * * *
26247418 TGA-TGATGGCATCAATTTG-TA
65 GGACAG-TGGCATCAATGTGCGA
*
26247439 TTTTCGTGTAAGACCACGTCTGGGACGATGGCATCGATATGTAT-TTTTGA-GTAAGACC-CTGT
1 -TTTCGTGTAAGACCACGTCTGGGACGATGGCATCGAT-T-TATATTTTCATGTAAGACCAC-GT
*
26247501 CTGGGACAGTGGCATCGATGTGCGA
62 CTGGGACAGTGGCATCAATGTGCGA
* *
26247526 TTACATGTAAGACCACGTCTGGGACGATGGC
1 TTTCGTGTAAGACCACGTCTGGGACGATGGC
26247557 GTTGTATGAA
Statistics
Matches: 103, Mismatches: 8, Indels: 12
0.84 0.07 0.10
Matches are distributed among these distances:
85 4 0.04
86 88 0.85
87 8 0.08
88 3 0.03
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.31
Consensus pattern (86 bp):
TTTCGTGTAAGACCACGTCTGGGACGATGGCATCGATTTATATTTTCATGTAAGACCACGTCTGG
GACAGTGGCATCAATGTGCGA
Found at i:26252017 original size:109 final size:109
Alignment explanation
Indices: 26251826--26252243 Score: 764
Period size: 109 Copynumber: 3.8 Consensus size: 109
26251816 TTTCTAATTG
*
26251826 AGGCAATGTTTTACGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
26251891 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTATAAAATA
66 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTATAAAATA
26251935 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
26252000 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTATAAAATA
66 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTATAAAATA
* *
26252044 AGTCAATGTTTCGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* * * *
26252109 CGTTCAACCAAATAGCTTAATATCCTTTTAAAATTTTTAAAATA
66 CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTATAAAATA
26252153 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
26252218 CGTTCAACCAAATAGCTAAACATCCT
66 CGTTCAACCAAATAGCTAAATATCCT
26252244 CTTGAATTTT
Statistics
Matches: 298, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
109 298 1.00
ACGTcount: A:0.31, C:0.17, G:0.19, T:0.33
Consensus pattern (109 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTTCAACCAAATAGCTAAATATCCTTTCAAAAATTATAAAATA
Found at i:26255855 original size:40 final size:39
Alignment explanation
Indices: 26255793--26255914 Score: 147
Period size: 43 Copynumber: 3.0 Consensus size: 39
26255783 GACCCATATT
26255793 TGATTAAAAATAAAAATATATATATTTAATATATAATTC
1 TGATTAAAAATAAAAATATATATATTTAATATATAATTC
* *
26255832 TGATTAAAAATCTAAAATATATATATTTAATAAAAAGTATATT-
1 TGATTAAAAAT-AAAAATATATATATTTAAT--ATA-TA-ATTC
* *
26255875 TTATTAAAAAATAAAAATATATGTATTTAATATATAATTC
1 TGATT-AAAAATAAAAATATATATATTTAATATATAATTC
26255915 AGGTCGGGTC
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
39 14 0.20
40 20 0.29
41 2 0.03
42 2 0.03
43 23 0.33
44 9 0.13
ACGTcount: A:0.53, C:0.02, G:0.03, T:0.41
Consensus pattern (39 bp):
TGATTAAAAATAAAAATATATATATTTAATATATAATTC
Found at i:26255872 original size:18 final size:17
Alignment explanation
Indices: 26255851--26255884 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26255841 ATCTAAAATA
26255851 TATATATTTAATAAAAAG
1 TATAT-TTTAATAAAAAG
*
26255869 TATATTTTATTAAAAA
1 TATATTTTAATAAAAA
26255885 ATAAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.44
Consensus pattern (17 bp):
TATATTTTAATAAAAAG
Found at i:26255904 original size:23 final size:24
Alignment explanation
Indices: 26255860--26255904 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
26255850 ATATATATTT
*
26255860 AATAAAAAGTATATTTTATTAAAA
1 AATAAAAAGTATATTATATTAAAA
26255884 AATAAAAA-TATATGTAT-TTAA
1 AATAAAAAGTATAT-TATATTAA
26255905 TATATAATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (24 bp):
AATAAAAAGTATATTATATTAAAA
Found at i:26258086 original size:26 final size:25
Alignment explanation
Indices: 26258057--26258111 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
26258047 AATCTCAATG
*
26258057 TTTACAATTTTTTGTTAATTTGACTC
1 TTTACAATTTTTTGTTAATTTAAC-C
***
26258083 TTTATTCTTTTTTGTTAATTTAACC
1 TTTACAATTTTTTGTTAATTTAACC
26258108 TTTA
1 TTTA
26258112 AAAGAGGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.22, C:0.11, G:0.05, T:0.62
Consensus pattern (25 bp):
TTTACAATTTTTTGTTAATTTAACC
Found at i:26258670 original size:29 final size:30
Alignment explanation
Indices: 26258615--26258686 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
26258605 CACGGAAAAT
*
26258615 GGCCCATTTGGGTAAATAATT-AAAAAACC
1 GGCCCATTTTGGTAAATAATTAAAAAAACC
*
26258644 GGCCCATTTTGGTAAAT-TTTAAAAAAAACC
1 GGCCCATTTTGGTAAATAATT-AAAAAAACC
**
26258674 GGCCTTTTTTGGT
1 GGCCCATTTTGGT
26258687 TATTTGCCCG
Statistics
Matches: 37, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
28 2 0.05
29 16 0.43
30 19 0.51
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (30 bp):
GGCCCATTTTGGTAAATAATTAAAAAAACC
Found at i:26258677 original size:30 final size:29
Alignment explanation
Indices: 26258615--26258669 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
26258605 CACGGAAAAT
*
26258615 GGCCCATTTGGGTAAATAATTAAAAAACC
1 GGCCCATTTTGGTAAATAATTAAAAAACC
*
26258644 GGCCCATTTTGGTAAAT-TTTAAAAAA
1 GGCCCATTTTGGTAAATAATTAAAAAA
26258670 AACCGGCCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 8 0.33
29 16 0.67
ACGTcount: A:0.40, C:0.15, G:0.16, T:0.29
Consensus pattern (29 bp):
GGCCCATTTTGGTAAATAATTAAAAAACC
Found at i:26270550 original size:11 final size:11
Alignment explanation
Indices: 26270536--26270562 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
26270526 TTTTTTTCAC
26270536 TATTTTGCTAT
1 TATTTTGCTAT
26270547 TATTTTGCTAT
1 TATTTTGCTAT
26270558 TATTT
1 TATTT
26270563 CACTATTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.19, C:0.07, G:0.07, T:0.67
Consensus pattern (11 bp):
TATTTTGCTAT
Found at i:26270787 original size:21 final size:23
Alignment explanation
Indices: 26270762--26270803 Score: 61
Period size: 21 Copynumber: 1.9 Consensus size: 23
26270752 TTTGGTGTAT
*
26270762 TATATT-TTTAAAA-AATATATA
1 TATATTATATAAAATAATATATA
26270783 TATATTATATAAAATAATATA
1 TATATTATATAAAATAATATA
26270804 GAAAAATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 6 0.33
23 6 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TATATTATATAAAATAATATATA
Found at i:26273440 original size:31 final size:30
Alignment explanation
Indices: 26273367--26273448 Score: 94
Period size: 31 Copynumber: 2.7 Consensus size: 30
26273357 AATGTATAAT
*
26273367 TATATACAT-AAACTTTAATTTGGTGCAAT
1 TATATACATGAAACTTTAATTTGGTGCAAA
* * * *
26273396 TATACACGTGAAACTCTAATTATGGTTCAAA
1 TATATACATGAAACTTTAATT-TGGTGCAAA
*
26273427 TATATACTTGAAACTTTAATTT
1 TATATACATGAAACTTTAATTT
26273449 TGATTTAATC
Statistics
Matches: 43, Mismatches: 8, Indels: 3
0.80 0.15 0.06
Matches are distributed among these distances:
29 7 0.16
30 11 0.26
31 25 0.58
ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40
Consensus pattern (30 bp):
TATATACATGAAACTTTAATTTGGTGCAAA
Found at i:26273625 original size:30 final size:29
Alignment explanation
Indices: 26273591--26273649 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
26273581 TAATTGGATC
*
26273591 AAATCAATATTTCATGTATAAAATTACACA
1 AAATCAA-AGTTCATGTATAAAATTACACA
26273621 AAATCAAAGTTCATGTATAAAATTACACA
1 AAATCAAAGTTCATGTATAAAATTACACA
26273650 TTATACCATA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 21 0.75
30 7 0.25
ACGTcount: A:0.51, C:0.14, G:0.05, T:0.31
Consensus pattern (29 bp):
AAATCAAAGTTCATGTATAAAATTACACA
Found at i:26275087 original size:27 final size:30
Alignment explanation
Indices: 26275024--26275089 Score: 75
Period size: 32 Copynumber: 2.2 Consensus size: 30
26275014 AATCTTAAAA
* *
26275024 TTATATATTAATTTTAATTTAATGGTGTAAT
1 TTATATATAAATTTTAATTT-ATGGTGTAAG
26275055 TGTATATATAAATTTTAA-TT-TGGTG-AAG
1 T-TATATATAAATTTTAATTTATGGTGTAAG
26275083 TTATATA
1 TTATATA
26275090 CGTGAAACTC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
27 6 0.19
28 3 0.09
29 5 0.16
31 3 0.09
32 15 0.47
ACGTcount: A:0.36, C:0.00, G:0.12, T:0.52
Consensus pattern (30 bp):
TTATATATAAATTTTAATTTATGGTGTAAG
Found at i:26275321 original size:28 final size:30
Alignment explanation
Indices: 26275265--26275333 Score: 88
Period size: 28 Copynumber: 2.3 Consensus size: 30
26275255 GTTAATAATT
*
26275265 TATAATAATTGGATCAAATTAAAATTTCATG
1 TATAA-AATTGGATCAAATTAAAAGTTCATG
*
26275296 TATAAAATTGTAT-AAATT-AAAGTTCATG
1 TATAAAATTGGATCAAATTAAAAGTTCATG
*
26275324 TATACAATTG
1 TATAAAATTG
26275334 CACATTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
28 18 0.51
29 5 0.14
30 7 0.20
31 5 0.14
ACGTcount: A:0.45, C:0.06, G:0.10, T:0.39
Consensus pattern (30 bp):
TATAAAATTGGATCAAATTAAAAGTTCATG
Found at i:26277847 original size:13 final size:13
Alignment explanation
Indices: 26277829--26277878 Score: 55
Period size: 13 Copynumber: 3.7 Consensus size: 13
26277819 ATATTTTTTT
26277829 AATTAAAATTATA
1 AATTAAAATTATA
*
26277842 AATTAAAATAATA
1 AATTAAAATTATA
* *
26277855 ATTCTAAAAATTATC
1 AAT-T-AAAATTATA
26277870 AATTAAAAT
1 AATTAAAAT
26277879 GTTATTAAGC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
13 19 0.63
14 2 0.07
15 9 0.30
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.36
Consensus pattern (13 bp):
AATTAAAATTATA
Found at i:26284847 original size:8 final size:8
Alignment explanation
Indices: 26284834--26284870 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
26284824 CTGTCAAATT
26284834 TTATAAAA
1 TTATAAAA
26284842 TTATAAAA
1 TTATAAAA
*
26284850 TTATATAA
1 TTATAAAA
*
26284858 TAATAAAA
1 TTATAAAA
26284866 TTATA
1 TTATA
26284871 TTTTAAACCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (8 bp):
TTATAAAA
Found at i:26285497 original size:29 final size:29
Alignment explanation
Indices: 26285465--26285520 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
26285455 AGCAAATGAT
*
26285465 AAATT-AATATCTATAATAATCTAATATCC
1 AAATTCAATATCTATAA-AAACTAATATCC
* *
26285494 AAATTCATTATTTATAAAAACTAATAT
1 AAATTCAATATCTATAAAAACTAATAT
26285521 AATTTTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 14 0.61
30 9 0.39
ACGTcount: A:0.50, C:0.11, G:0.00, T:0.39
Consensus pattern (29 bp):
AAATTCAATATCTATAAAAACTAATATCC
Found at i:26293091 original size:68 final size:66
Alignment explanation
Indices: 26293005--26293134 Score: 183
Period size: 68 Copynumber: 1.9 Consensus size: 66
26292995 AAAGTCTTAA
*
26293005 CTGCTCATAACATCATGGTGGGGTATAACAGATTGTTACTAATAAAAATGAAAACG-CTAGAAAA
1 CTGCTCATAACATCATGGTGGGGTATAAAAGATTGTTACTAA-AAAAA-GAAAACGTC-AGAAAA
26293069 GTGG
63 GTGG
* *
26293073 CTGCTCA-AATCATTATGGTGGGGTGTAAAAGATTGTTACTAAAAAAAGAAAACGTCAGAAAA
1 CTGCTCATAA-CATCATGGTGGGGTATAAAAGATTGTTACTAAAAAAAGAAAACGTCAGAAAA
26293135 AAAGAGATCA
Statistics
Matches: 57, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
66 13 0.23
67 8 0.14
68 36 0.63
ACGTcount: A:0.42, C:0.12, G:0.22, T:0.25
Consensus pattern (66 bp):
CTGCTCATAACATCATGGTGGGGTATAAAAGATTGTTACTAAAAAAAGAAAACGTCAGAAAAGTG
G
Found at i:26297837 original size:20 final size:21
Alignment explanation
Indices: 26297812--26297850 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
26297802 ATTATTTAAA
*
26297812 TAAATA-TATAAAACAAATCT
1 TAAATATTATAAAAAAAATCT
26297832 TAAATATTATAAAAAAAAT
1 TAAATATTATAAAAAAAAT
26297851 ATAAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (21 bp):
TAAATATTATAAAAAAAATCT
Found at i:26297855 original size:20 final size:20
Alignment explanation
Indices: 26297811--26297855 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 20
26297801 AATTATTTAA
*
26297811 ATAAATATATAAAACAAATC
1 ATAAATATATAAAAAAAATC
*
26297831 TTAAATATTATAAAAAAAAT-
1 ATAAATA-TATAAAAAAAATC
26297851 ATAAA
1 ATAAA
26297856 AATAAGTTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 10 0.48
21 11 0.52
ACGTcount: A:0.67, C:0.04, G:0.00, T:0.29
Consensus pattern (20 bp):
ATAAATATATAAAAAAAATC
Found at i:26304082 original size:9 final size:9
Alignment explanation
Indices: 26304068--26304102 Score: 70
Period size: 9 Copynumber: 3.9 Consensus size: 9
26304058 TTAATGTTTT
26304068 AAAAATTAA
1 AAAAATTAA
26304077 AAAAATTAA
1 AAAAATTAA
26304086 AAAAATTAA
1 AAAAATTAA
26304095 AAAAATTA
1 AAAAATTA
26304103 TTTTTTTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (9 bp):
AAAAATTAA
Found at i:26304509 original size:88 final size:86
Alignment explanation
Indices: 26304367--26304560 Score: 266
Period size: 88 Copynumber: 2.2 Consensus size: 86
26304357 CTTAAACTTT
* * * * * * *
26304367 TTTAAGAAAAGTAATTAGGCTCTTGCTTTTTGTTTCACTCAATTGGGTATTTGAACTTTCAAAAT
1 TTTAAAAAAAGCAATTAAGCGCTTGCTATTTGTTGCACTCAATTGGGTACTTGAACTTTCAAAAT
26304432 GCATCAAAAA-AGCCCTCAAATC
66 GCATCAAAAAGA-CCCTCAAA-C
26304454 TTTTCAAAAAAAGCAATTAAGCGCTTGCTATTT-TTGCACTCAATTGGGTACTTGAACTTTCAAA
1 -TTT-AAAAAAAGCAATTAAGCGCTTGCTATTTGTTGCACTCAATTGGGTACTTGAACTTTCAAA
26304518 ATGCATCAAAAAGACCCTCAAAC
64 ATGCATCAAAAAGACCCTCAAAC
*
26304541 TTTAAAAAAAACAATTAAGC
1 TTTAAAAAAAGCAATTAAGC
26304561 CCCTACTTTT
Statistics
Matches: 96, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
85 16 0.17
86 3 0.03
87 1 0.01
88 52 0.54
89 24 0.25
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (86 bp):
TTTAAAAAAAGCAATTAAGCGCTTGCTATTTGTTGCACTCAATTGGGTACTTGAACTTTCAAAAT
GCATCAAAAAGACCCTCAAAC
Found at i:26304985 original size:37 final size:37
Alignment explanation
Indices: 26304914--26304987 Score: 96
Period size: 38 Copynumber: 2.0 Consensus size: 37
26304904 AGGGTCATTA
* * *
26304914 ATTTTTTTATGATTTTTTATAAAATTTTACAATTTTTT
1 ATTTTTTTACGATTTTTTAAAAAAATTTA-AATTTTTT
26304952 ATTTTTTTACGATTTTTATAAAAAAATTT-AATTTTT
1 ATTTTTTTACGATTTTT-TAAAAAAATTTAAATTTTT
26304988 AATAAATTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
37 7 0.22
38 16 0.50
39 9 0.28
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.62
Consensus pattern (37 bp):
ATTTTTTTACGATTTTTTAAAAAAATTTAAATTTTTT
Found at i:26305009 original size:16 final size:15
Alignment explanation
Indices: 26304978--26305022 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 15
26304968 TATAAAAAAA
26304978 TTTAATTTTTAATAAAT
1 TTTAATTTTT--TAAAT
26304995 TTTAAATTTTTTAAAT
1 TTT-AATTTTTTAAAT
*
26305011 TTTTATTTTTTA
1 TTTAATTTTTTA
26305023 TAATATTTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
15 8 0.31
16 8 0.31
17 3 0.12
18 7 0.27
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTAATTTTTTAAAT
Found at i:26306231 original size:80 final size:82
Alignment explanation
Indices: 26306098--26306252 Score: 244
Period size: 80 Copynumber: 1.9 Consensus size: 82
26306088 TGGCCCACTC
* *
26306098 AAAATGAAAATTTTCAATTCAGTCTTATTATAAATAAAAAATCTATAAATT-A-ATGTAGTGAAA
1 AAAATAAAAATTTTCAATTCAGTCTTATTATAAATAAAAAATCTATAAATTAATATGTAGTAAAA
*
26306161 TTATATTTTAGTCCCTT
66 TTACATTTTAGTCCCTT
*
26306178 AAAATAAAAATTTTCAATTCAGTCTTCTTATAAATAGAAAAAT-TATAAATTAATATGTAGTAAA
1 AAAATAAAAATTTTCAATTCAGTCTTATTATAAATA-AAAAATCTATAAATTAATATGTAGTAAA
26306242 ATTACATTTTA
65 ATTACATTTTA
26306253 ACTCTCATAA
Statistics
Matches: 68, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
80 42 0.62
81 7 0.10
82 19 0.28
ACGTcount: A:0.46, C:0.08, G:0.06, T:0.39
Consensus pattern (82 bp):
AAAATAAAAATTTTCAATTCAGTCTTATTATAAATAAAAAATCTATAAATTAATATGTAGTAAAA
TTACATTTTAGTCCCTT
Found at i:26310357 original size:32 final size:32
Alignment explanation
Indices: 26310284--26310358 Score: 96
Period size: 32 Copynumber: 2.3 Consensus size: 32
26310274 TCATATTTTT
**
26310284 AAAACTAAAAATTAATGAATAATTAAAAAATA
1 AAAACTAAAAATTAATGAATAACGAAAAAATA
** * *
26310316 AAATTTAAAAATTAATGAATAACGAATAATTA
1 AAAACTAAAAATTAATGAATAACGAAAAAATA
26310348 AAAACTAAAAA
1 AAAACTAAAAA
26310359 AATAAAGAGA
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.67, C:0.04, G:0.04, T:0.25
Consensus pattern (32 bp):
AAAACTAAAAATTAATGAATAACGAAAAAATA
Found at i:26311262 original size:20 final size:21
Alignment explanation
Indices: 26311237--26311278 Score: 68
Period size: 20 Copynumber: 2.0 Consensus size: 21
26311227 ATAATTTTTT
26311237 ATTTTTAATAATGTTT-TAAA
1 ATTTTTAATAATGTTTATAAA
*
26311257 ATTTTTAATAGTGTTTATAAA
1 ATTTTTAATAATGTTTATAAA
26311278 A
1 A
26311279 ATAAAATACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 15 0.75
21 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.52
Consensus pattern (21 bp):
ATTTTTAATAATGTTTATAAA
Found at i:26311394 original size:19 final size:19
Alignment explanation
Indices: 26311372--26311408 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
26311362 TTTTTTTTCT
26311372 AAATTTTGT-ATAAATTTTA
1 AAATTTT-TAATAAATTTTA
26311391 AAATTTTTAATAAATTTT
1 AAATTTTTAATAAATTTT
26311409 GTAAACATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (19 bp):
AAATTTTTAATAAATTTTA
Found at i:26314046 original size:18 final size:17
Alignment explanation
Indices: 26314002--26314046 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 17
26313992 AAGCTCGGGC
*
26314002 CATGTAATGTTTTATAT
1 CATGTAATTTTTTATAT
* *
26314019 CATATTATTTTTATATAT
1 CATGTAATTTTT-TATAT
26314037 CATGTAATTT
1 CATGTAATTT
26314047 ATATCACATA
Statistics
Matches: 22, Mismatches: 5, Indels: 1
0.79 0.18 0.04
Matches are distributed among these distances:
17 9 0.41
18 13 0.59
ACGTcount: A:0.31, C:0.07, G:0.07, T:0.56
Consensus pattern (17 bp):
CATGTAATTTTTTATAT
Found at i:26320159 original size:29 final size:29
Alignment explanation
Indices: 26320109--26320164 Score: 71
Period size: 29 Copynumber: 1.9 Consensus size: 29
26320099 CAAATAGGGA
26320109 TTAAATTGAGAAATATGAAAAT-TATGTG
1 TTAAATTGAGAAATATGAAAATGTATGTG
*
26320137 TTAAATGTGAGAAAT-TGTGAAATGTATG
1 TTAAAT-TGAGAAATATG-AAAATGTATG
26320165 GGCTGCTATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
28 8 0.33
29 12 0.50
30 4 0.17
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (29 bp):
TTAAATTGAGAAATATGAAAATGTATGTG
Found at i:26320627 original size:25 final size:25
Alignment explanation
Indices: 26320599--26320654 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
26320589 ATATCGATTC
*
26320599 CAGCTCTTATGAGCTTACCGATACT
1 CAGCTCGTATGAGCTTACCGATACT
* *
26320624 CAGCTCGTATGAGCTTACCGTTATT
1 CAGCTCGTATGAGCTTACCGATACT
26320649 CAGCTC
1 CAGCTC
26320655 AGAGGAGCTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (25 bp):
CAGCTCGTATGAGCTTACCGATACT
Found at i:26320662 original size:25 final size:25
Alignment explanation
Indices: 26320599--26320666 Score: 75
Period size: 25 Copynumber: 2.7 Consensus size: 25
26320589 ATATCGATTC
* *
26320599 CAGCTCTTATGAGCTTACCGATACT
1 CAGCTCGTAGGAGCTTACCGATACT
* * *
26320624 CAGCTCGTATGAGCTTACCGTTATT
1 CAGCTCGTAGGAGCTTACCGATACT
26320649 CAGCTCAG-AGGAGCTTAC
1 CAGCTC-GTAGGAGCTTAC
26320667 TGTTTATCGC
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
25 37 0.97
26 1 0.03
ACGTcount: A:0.24, C:0.26, G:0.21, T:0.29
Consensus pattern (25 bp):
CAGCTCGTAGGAGCTTACCGATACT
Found at i:26321950 original size:43 final size:43
Alignment explanation
Indices: 26321902--26321988 Score: 156
Period size: 43 Copynumber: 2.0 Consensus size: 43
26321892 ACGGGTATGG
*
26321902 ACACGGGCTGGGACACGGCCGTGTGTCCCCATTTTGAATGCCT
1 ACACGGGCTGGGACACGGCCGTGTGTCCCCATTTTAAATGCCT
*
26321945 ACACGGGCTGGGACACGTCCGTGTGTCCCCATTTTAAATGCCT
1 ACACGGGCTGGGACACGGCCGTGTGTCCCCATTTTAAATGCCT
26321988 A
1 A
26321989 TTTTGAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 42 1.00
ACGTcount: A:0.18, C:0.30, G:0.28, T:0.24
Consensus pattern (43 bp):
ACACGGGCTGGGACACGGCCGTGTGTCCCCATTTTAAATGCCT
Found at i:26325509 original size:15 final size:16
Alignment explanation
Indices: 26325479--26325510 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26325469 TTATATTATA
26325479 AAAATATTATTAAATT
1 AAAATATTATTAAATT
26325495 AAAATATTA-TAAATT
1 AAAATATTATTAAATT
26325510 A
1 A
26325511 TATTAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAAATATTATTAAATT
Found at i:26325514 original size:25 final size:26
Alignment explanation
Indices: 26325471--26325523 Score: 74
Period size: 24 Copynumber: 2.1 Consensus size: 26
26325461 TTCTTGATTT
26325471 ATATTATAAAAATATTATTAAATTAAA
1 ATATTATAAAAATATTATT-AATTAAA
*
26325498 ATATTAT-AAATTA-TATTAATTAAA
1 ATATTATAAAAATATTATTAATTAAA
26325522 AT
1 AT
26325524 TAAGATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 9 0.36
25 4 0.16
26 5 0.20
27 7 0.28
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (26 bp):
ATATTATAAAAATATTATTAATTAAA
Found at i:26325531 original size:25 final size:22
Alignment explanation
Indices: 26325481--26325538 Score: 53
Period size: 24 Copynumber: 2.4 Consensus size: 22
26325471 ATATTATAAA
**
26325481 AATATTATTAAATTAAAATATTAT
1 AATA-TATT-AATTAAAATAAGAT
26325505 AAATTATATTAATTAAAATTAAGAT
1 -AA-TATATTAATTAAAA-TAAGAT
26325530 AATATATTA
1 AATATATTA
26325539 TGGAAAACAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
23 7 0.24
24 10 0.34
25 10 0.34
26 2 0.07
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATTAATTAAAATAAGAT
Found at i:26325538 original size:28 final size:27
Alignment explanation
Indices: 26325482--26325539 Score: 64
Period size: 28 Copynumber: 2.1 Consensus size: 27
26325472 TATTATAAAA
26325482 ATATTATTAAATTAAAATATTATAAATT
1 ATATTATTAAATTAAAATA-TATAAATT
* *
26325510 ATATTAATTAAAATTAAGATA-ATATATT
1 ATATT-ATT-AAATTAAAATATATAAATT
26325538 AT
1 AT
26325540 GGAAAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
28 13 0.50
29 3 0.12
30 10 0.38
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (27 bp):
ATATTATTAAATTAAAATATATAAATT
Found at i:26325695 original size:16 final size:15
Alignment explanation
Indices: 26325674--26325706 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
26325664 AAAATATTAT
26325674 TATATTATTATTATAA
1 TATATTATTATTA-AA
26325690 TATATTATTATTAAA
1 TATATTATTATTAAA
26325705 TA
1 TA
26325707 GTGCATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
TATATTATTATTAAA
Found at i:26325761 original size:15 final size:16
Alignment explanation
Indices: 26325736--26325765 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26325726 TAAGTAAGTA
26325736 AAACAAAAAGAAAAAG
1 AAACAAAAAGAAAAAG
26325752 AAAC-AAAAGAAAAA
1 AAACAAAAAGAAAAA
26325766 CAGCAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.83, C:0.07, G:0.10, T:0.00
Consensus pattern (16 bp):
AAACAAAAAGAAAAAG
Found at i:26326740 original size:23 final size:22
Alignment explanation
Indices: 26326706--26326791 Score: 81
Period size: 23 Copynumber: 4.0 Consensus size: 22
26326696 GCTTTGCCGA
*
26326706 TCAGACACTTTATGTGTCGTATC
1 TCAGGCAC-TTATGTGTCGTATC
*
26326729 TCAGGCATTTTATGTGTCGTATC
1 TCAGGCA-CTTATGTGTCGTATC
**
26326752 -C-GGCACCTCGTGTGTCGT-T-
1 TCAGGCA-CTTATGTGTCGTATC
26326771 TCAGGCACTTATGTGTCGTAT
1 TCAGGCACTTATGTGTCGTAT
26326792 ACTGATCAGG
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
20 12 0.24
21 18 0.35
22 1 0.02
23 20 0.39
ACGTcount: A:0.16, C:0.22, G:0.23, T:0.38
Consensus pattern (22 bp):
TCAGGCACTTATGTGTCGTATC
Found at i:26326765 original size:21 final size:20
Alignment explanation
Indices: 26326717--26326791 Score: 60
Period size: 21 Copynumber: 3.5 Consensus size: 20
26326707 CAGACACTTT
* *
26326717 ATGTGTCGTATCTCAGGCATTTT
1 ATGTGTCGTA--TCAGGCA-CTC
*
26326740 ATGTGTCGTATCCGGCACCTC
1 ATGTGTCGTATCAGGCA-CTC
* * *
26326761 GTGTGTCGTTTCAGGCACTT
1 ATGTGTCGTATCAGGCACTC
26326781 ATGTGTCGTAT
1 ATGTGTCGTAT
26326792 ACTGATCAGG
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
20 11 0.26
21 21 0.50
23 10 0.24
ACGTcount: A:0.15, C:0.21, G:0.25, T:0.39
Consensus pattern (20 bp):
ATGTGTCGTATCAGGCACTC
Found at i:26332600 original size:15 final size:16
Alignment explanation
Indices: 26332570--26332601 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
26332560 TTATATTATA
26332570 AAAATATTATTAAATT
1 AAAATATTATTAAATT
26332586 AAAATATTA-TAAATT
1 AAAATATTATTAAATT
26332601 A
1 A
26332602 TATTAATTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAAATATTATTAAATT
Found at i:26332605 original size:25 final size:26
Alignment explanation
Indices: 26332562--26332611 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26332552 TTCTTGATTT
26332562 ATATTATAAAAATATTATTAAATTAAA
1 ATATTATAAAAATATTATT-AATTAAA
*
26332589 ATATTAT-AAATTA-TATTAATTAA
1 ATATTATAAAAATATTATTAATTAA
26332612 CATTAAGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 6 0.27
25 4 0.18
26 5 0.23
27 7 0.32
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (26 bp):
ATATTATAAAAATATTATTAATTAAA
Found at i:26332629 original size:28 final size:27
Alignment explanation
Indices: 26332573--26332631 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 27
26332563 TATTATAAAA
26332573 ATATTATTAAATTAAAATATTATAAATT
1 ATATTATTAAATTAAAATA-TATAAATT
* *
26332601 ATATTAATTAACATTAAGATA-ATATATT
1 ATATT-ATTAA-ATTAAAATATATAAATT
26332629 ATA
1 ATA
26332632 GGAAACAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
28 14 0.52
29 5 0.19
30 8 0.30
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.44
Consensus pattern (27 bp):
ATATTATTAAATTAAAATATATAAATT
Found at i:26333801 original size:22 final size:23
Alignment explanation
Indices: 26333764--26333807 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 23
26333754 GATTTGCCGA
26333764 TCAGACACTTTATGTGTCGTATC
1 TCAGACACTTTATGTGTCGTATC
26333787 TCAGACAC-TTATGTGTCGTAT
1 TCAGACACTTTATGTGTCGTAT
26333808 ACTGATCAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (23 bp):
TCAGACACTTTATGTGTCGTATC
Found at i:26337038 original size:33 final size:32
Alignment explanation
Indices: 26336962--26337072 Score: 91
Period size: 33 Copynumber: 3.4 Consensus size: 32
26336952 CATAGTCCAA
* **
26336962 CTATGGTCTTACA-CATGCATTGCCATGGCCCAG
1 CTATGGTCTTACATCA-G-AATGCCATAACCCAG
* * *
26336995 CCATGATCTTACATTC-GTAGTGCCATAACCCAG
1 CTATGGTCTTACA-TCAG-AATGCCATAACCCAG
* *
26337028 TTATGGTCTTATCATCAGAATGCCATAGCCCAG
1 CTATGGTCTTA-CATCAGAATGCCATAACCCAG
26337061 CTATGGTCTTAC
1 CTATGGTCTTAC
26337073 TTATAAATAC
Statistics
Matches: 62, Mismatches: 12, Indels: 9
0.75 0.14 0.11
Matches are distributed among these distances:
32 1 0.02
33 57 0.92
34 3 0.05
35 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (32 bp):
CTATGGTCTTACATCAGAATGCCATAACCCAG
Found at i:26337123 original size:101 final size:101
Alignment explanation
Indices: 26336949--26337207 Score: 315
Period size: 101 Copynumber: 2.6 Consensus size: 101
26336939 GTTTTCTTTG
* * * * * * * * *
26336949 TGCCATAGTCCAACTATGGTCTTACACAT--GCATTGCCATGGCCCAGCCATGATCTTACATTCG
1 TGCCATAGCCCAACTATGGTATTACATATAAACACTGCCATGGTCCAACCATGGTCTTACATTCA
* * *
26337012 TAGTGCCATAACCCAGTTATGGTCTTATCATCAGAA
66 AAGTGCCATAACCCAGTTATGGTATTATCATCAAAA
* * * * *
26337048 TGCCATAGCCCAGCTATGGTCTTACTTATAAATACTGCCATGGTCCAACCATGGTCTTACGTTCA
1 TGCCATAGCCCAACTATGGTATTACATATAAACACTGCCATGGTCCAACCATGGTCTTACATTCA
* * *
26337113 AAGTGTCATAACCCAGTTATGGTATTTTCATTAAAA
66 AAGTGCCATAACCCAGTTATGGTATTATCATCAAAA
*
26337149 TGCCATAGCCCAACTATGGTATTACATATAAACATTGCCATGGTCCAACCATGGTCTTA
1 TGCCATAGCCCAACTATGGTATTACATATAAACACTGCCATGGTCCAACCATGGTCTTA
26337208 TCCGTCAATT
Statistics
Matches: 135, Mismatches: 23, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
99 25 0.19
101 110 0.81
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.31
Consensus pattern (101 bp):
TGCCATAGCCCAACTATGGTATTACATATAAACACTGCCATGGTCCAACCATGGTCTTACATTCA
AAGTGCCATAACCCAGTTATGGTATTATCATCAAAA
Found at i:26341511 original size:11 final size:11
Alignment explanation
Indices: 26341451--26341511 Score: 54
Period size: 11 Copynumber: 5.3 Consensus size: 11
26341441 AATCAAAAAA
26341451 GAAAAAGAAAG
1 GAAAAAGAAAG
26341462 GAAAAGCAAGAAA-
1 G-AAA--AAGAAAG
26341475 GAAAAAGAAA-
1 GAAAAAGAAAG
26341485 GAGAAAAGAAATG
1 GA-AAAAGAAA-G
*
26341498 GAAAAGGAAAG
1 GAAAAAGAAAG
26341509 GAA
1 GAA
26341512 TACGTTAACT
Statistics
Matches: 43, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
10 8 0.19
11 13 0.30
12 13 0.30
13 3 0.07
14 6 0.14
ACGTcount: A:0.69, C:0.02, G:0.28, T:0.02
Consensus pattern (11 bp):
GAAAAAGAAAG
Found at i:26343864 original size:43 final size:43
Alignment explanation
Indices: 26343812--26343919 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 43
26343802 CGTGTATTAC
* *
26343812 TTTCC-GTTTAGCTCTTACGAGCTTCTATTTAACTCATAT-GAG
1 TTTCCTGTTTAGCTCTTACGAGCTTCTATTCAACCCATATAG-G
* * *
26343854 TTTCCTGTTTAGCTCTTTCGAGCTTCTGTTCAACCCTTATAGG
1 TTTCCTGTTTAGCTCTTACGAGCTTCTATTCAACCCATATAGG
* *
26343897 TTT-CTATTCAGCTCTTACGAGCT
1 TTTCCTGTTTAGCTCTTACGAGCT
26343920 ACTGTTCAGC
Statistics
Matches: 56, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
42 22 0.39
43 33 0.59
44 1 0.02
ACGTcount: A:0.18, C:0.24, G:0.15, T:0.44
Consensus pattern (43 bp):
TTTCCTGTTTAGCTCTTACGAGCTTCTATTCAACCCATATAGG
Found at i:26343882 original size:21 final size:21
Alignment explanation
Indices: 26343817--26343883 Score: 64
Period size: 21 Copynumber: 3.1 Consensus size: 21
26343807 ATTACTTTCC
*
26343817 GTTTAGCTCTTACGAGCTTCT
1 GTTTAGCTCTTTCGAGCTTCT
* * * *
26343838 ATTTAACTCATAT-GAGTTTCCT
1 GTTTAGCTC-TTTCGAGCTT-CT
26343860 GTTTAGCTCTTTCGAGCTTCT
1 GTTTAGCTCTTTCGAGCTTCT
26343881 GTT
1 GTT
26343884 CAACCCTTAT
Statistics
Matches: 34, Mismatches: 9, Indels: 6
0.69 0.18 0.12
Matches are distributed among these distances:
21 19 0.56
22 15 0.44
ACGTcount: A:0.16, C:0.21, G:0.16, T:0.46
Consensus pattern (21 bp):
GTTTAGCTCTTTCGAGCTTCT
Found at i:26349078 original size:9 final size:9
Alignment explanation
Indices: 26349052--26349152 Score: 59
Period size: 9 Copynumber: 11.3 Consensus size: 9
26349042 ATTTAAGATT
26349052 TTATT-TAA
1 TTATTATAA
26349060 GTTATATATAA
1 -TTAT-TATAA
*
26349071 ATATTAT-A
1 TTATTATAA
26349079 TGTA-TATAA
1 T-TATTATAA
26349088 TTATTATAA
1 TTATTATAA
*
26349097 TTATTAAACA
1 TTATTATA-A
**
26349107 TTATTATGG
1 TTATTATAA
26349116 TT-TTAT-A
1 TTATTATAA
*
26349123 TTATTATTA
1 TTATTATAA
* *
26349132 CTATTATTA
1 TTATTATAA
*
26349141 TTATTATTA
1 TTATTATAA
26349150 TTA
1 TTA
26349153 AATAAACCAA
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
7 2 0.03
8 14 0.19
9 45 0.60
10 11 0.15
11 3 0.04
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (9 bp):
TTATTATAA
Found at i:26349102 original size:3 final size:3
Alignment explanation
Indices: 26349087--26349152 Score: 55
Period size: 3 Copynumber: 22.3 Consensus size: 3
26349077 TATGTATATA
* ** * *
26349087 ATT ATT ATA ATT ATT AAAC ATT ATT ATG GTT -TT AT- ATT ATT ATT
1 ATT ATT ATT ATT ATT -ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
26349131 ACT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT A
26349153 AATAAACCAA
Statistics
Matches: 49, Mismatches: 11, Indels: 6
0.74 0.17 0.09
Matches are distributed among these distances:
2 4 0.08
3 44 0.90
4 1 0.02
ACGTcount: A:0.36, C:0.03, G:0.03, T:0.58
Consensus pattern (3 bp):
ATT
Found at i:26350381 original size:15 final size:15
Alignment explanation
Indices: 26350361--26350400 Score: 71
Period size: 15 Copynumber: 2.7 Consensus size: 15
26350351 AAGTTATGCA
*
26350361 ATTTATTATGAAATG
1 ATTTATCATGAAATG
26350376 ATTTATCATGAAATG
1 ATTTATCATGAAATG
26350391 ATTTATCATG
1 ATTTATCATG
26350401 TGGTTAATTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.05, G:0.12, T:0.45
Consensus pattern (15 bp):
ATTTATCATGAAATG
Found at i:26351920 original size:19 final size:18
Alignment explanation
Indices: 26351871--26351920 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
26351861 AATCATGTCG
*
26351871 TTCATTTTCAAAATATTA
1 TTCAATTTCAAAATATTA
*
26351889 TT-TATTT-ACAAATCATTA
1 TTCAATTTCA-AAAT-ATTA
26351907 TTCAATTTCAAAAT
1 TTCAATTTCAAAAT
26351921 GTTTTATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 7
0.71 0.09 0.20
Matches are distributed among these distances:
16 1 0.04
17 7 0.28
18 8 0.32
19 8 0.32
20 1 0.04
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (18 bp):
TTCAATTTCAAAATATTA
Found at i:26356704 original size:22 final size:23
Alignment explanation
Indices: 26356673--26356718 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
26356663 TAGAAAATTC
** *
26356673 AAATATTAAATCAAAATAGATAA
1 AAATATTAAAAAAAAAGAGATAA
26356696 AAAT-TTAAAAAAAAAGAGATAA
1 AAATATTAAAAAAAAAGAGATAA
26356718 A
1 A
26356719 GTGAGAAAAT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.70, C:0.02, G:0.07, T:0.22
Consensus pattern (23 bp):
AAATATTAAAAAAAAAGAGATAA
Found at i:26364512 original size:24 final size:24
Alignment explanation
Indices: 26364476--26364521 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
26364466 ATTATTCATT
26364476 ATATTATTGAATT-TTTCATTTTAA
1 ATATTATTGAATTATTT-ATTTTAA
* *
26364500 ATATTTTTTAATTATTTATTTT
1 ATATTATTGAATTATTTATTTT
26364522 TTTTATAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 16 0.84
25 3 0.16
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
ATATTATTGAATTATTTATTTTAA
Found at i:26365333 original size:19 final size:20
Alignment explanation
Indices: 26365309--26365346 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26365299 ATATTTATTT
26365309 TTTTAA-TATGATATAAATA
1 TTTTAATTATGATATAAATA
*
26365328 TTTTAATTATGATTTAAAT
1 TTTTAATTATGATATAAAT
26365347 TGTTAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (20 bp):
TTTTAATTATGATATAAATA
Found at i:26365352 original size:19 final size:19
Alignment explanation
Indices: 26365311--26365352 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
26365301 ATTTATTTTT
*
26365311 TTAATATGATATAAATATT
1 TTAATATGATATAAATATG
*
26365330 TTAATTATGATTTAAAT-TG
1 TTAA-TATGATATAAATATG
26365349 TTAA
1 TTAA
26365353 ATAAAATCAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (19 bp):
TTAATATGATATAAATATG
Found at i:26365916 original size:31 final size:31
Alignment explanation
Indices: 26365862--26365938 Score: 91
Period size: 31 Copynumber: 2.5 Consensus size: 31
26365852 GTTACAAAAT
* *
26365862 AATCATTAAACTATTCGAAAGTTTTCATTTA
1 AATCACTAAACTATTCGAAAGTTTTCAGTTA
* * * *
26365893 AGTCACTAAATTATTTGAAAGTTTTTAGTTA
1 AATCACTAAACTATTCGAAAGTTTTCAGTTA
*
26365924 AATCACTAGACTATT
1 AATCACTAAACTATT
26365939 AAGGTTTTTC
Statistics
Matches: 37, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.38, C:0.12, G:0.09, T:0.42
Consensus pattern (31 bp):
AATCACTAAACTATTCGAAAGTTTTCAGTTA
Found at i:26370333 original size:42 final size:42
Alignment explanation
Indices: 26370274--26370361 Score: 158
Period size: 42 Copynumber: 2.1 Consensus size: 42
26370264 GGTGATCTTC
*
26370274 GTAATTTTATATGTTGATGACATTCTACCCATTGGGAATGAT
1 GTAATATTATATGTTGATGACATTCTACCCATTGGGAATGAT
*
26370316 GTAATATTATATGTTGATGACATTCTACTCATTGGGAATGAT
1 GTAATATTATATGTTGATGACATTCTACCCATTGGGAATGAT
26370358 GTAA
1 GTAA
26370362 GGACATTGTC
Statistics
Matches: 44, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
42 44 1.00
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (42 bp):
GTAATATTATATGTTGATGACATTCTACCCATTGGGAATGAT
Found at i:26380705 original size:12 final size:12
Alignment explanation
Indices: 26380688--26380712 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26380678 ACCAGTCTCT
26380688 TTCTTCTTTTTC
1 TTCTTCTTTTTC
26380700 TTCTTCTTTTTC
1 TTCTTCTTTTTC
26380712 T
1 T
26380713 CCACCAAAGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (12 bp):
TTCTTCTTTTTC
Found at i:26388892 original size:31 final size:32
Alignment explanation
Indices: 26388847--26388909 Score: 94
Period size: 31 Copynumber: 2.0 Consensus size: 32
26388837 TTCCCAAAAG
*
26388847 AAAATTTACCAAGCCACAAACCAA-AAATAATT
1 AAAAATTACCAAGCCA-AAACCAATAAATAATT
26388879 AAAAATTA-CAAGCCAAAACCAATAAATAATT
1 AAAAATTACCAAGCCAAAACCAATAAATAATT
26388910 CATAATACTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
30 7 0.24
31 15 0.52
32 7 0.24
ACGTcount: A:0.59, C:0.19, G:0.03, T:0.19
Consensus pattern (32 bp):
AAAAATTACCAAGCCAAAACCAATAAATAATT
Found at i:26395156 original size:40 final size:39
Alignment explanation
Indices: 26395098--26395182 Score: 109
Period size: 40 Copynumber: 2.2 Consensus size: 39
26395088 TGTTCAGTTT
* *
26395098 TTATGAGCTTCTGTTGGCGTGTTTC-AGGTGGACCAACTC
1 TTATGAACTTCTGTTGGCGTATTTCGA-GTGGACCAACTC
* *
26395137 TTATGAACTTTTGTTTGGCGTATTTCGATTGGACCAACTC
1 TTATGAACTTCTG-TTGGCGTATTTCGAGTGGACCAACTC
26395177 TTATGA
1 TTATGA
26395183 GATTCTATCT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 11 0.28
40 28 0.70
41 1 0.03
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.40
Consensus pattern (39 bp):
TTATGAACTTCTGTTGGCGTATTTCGAGTGGACCAACTC
Found at i:26398062 original size:47 final size:47
Alignment explanation
Indices: 26398001--26398248 Score: 453
Period size: 47 Copynumber: 5.3 Consensus size: 47
26397991 CAGCCAAGAC
*
26398001 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26398048 AGTGTATATATGTGATAAGGCCTAAT-GCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26398094 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
26398141 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
26398188 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
26398235 AGTGTATATATGTG
1 AGTGTATATATGTG
26398249 CGATGTGATG
Statistics
Matches: 195, Mismatches: 5, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
46 46 0.24
47 149 0.76
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.31
Consensus pattern (47 bp):
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
Found at i:26398230 original size:94 final size:93
Alignment explanation
Indices: 26398001--26398660 Score: 592
Period size: 94 Copynumber: 7.2 Consensus size: 93
26397991 CAGCCAAGAC
26398001 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
26398066 GGCCTAATGCCGATGTGATGAATGTGAA
66 GGCCTAATGCCGATGTGATGAATGTGAA
* *
26398094 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
26398159 GGCCTAATAGCCGATGTGATGAATGTGAA
66 GGCCTAAT-GCCGATGTGATGAATGTGAA
**
26398188 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG-CGA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * *
26398252 TG--TGATG--AATGTGA--AA-GTGTATA
66 GGCCTAATGCCGATGTGATGAATGTG-A-A
* ** * * * *
26398275 TA-TGTGATAAG-G-CCTAATGGCC-GAT-G-TGATGAATG-TGAAAGTGTATATGTGTGATA-A
1 -AGTGT-ATATGTGTGATAA-GGCCTAATGGCCGATG--TGATGAATGTG-A-AAGTGT-ATATA
* * * *
26398332 -G-GCCTAATGGCC-GATG-TGATGAATG-TGAAAGTGTATA
58 TGTG-ATAA-GGCCTAATGCCGATG--TGATGAATGTG-A-A
* * **
26398369 TGTGTGATAAG-G-CCTAATGGCC-----G---ATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AGTGT-ATATGTGTGATAA-GGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
26398424 AAGGCCTAATAGCCGATGTGATGAATGTGAA
64 AAGGCCTAAT-GCCGATGTGATGAATGTGAA
*
26398455 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT-ATAA
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
26398519 GGCCTAATGGCCGATGTGATGAATGTGAA
66 GGCCTAAT-GCCGATGTGATGAATGTGAA
* * *
26398548 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAG
1 AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
* * * * *
26398613 GGCCGAGTGGCCAACGTGATGGATGTGAA
66 GGCCTAAT-GCCGATGTGATGAATGTGAA
* **
26398642 AGTGCATAAATGTGATAAG
1 AGTGTATATGTGTGATAAG
26398661 TCCCGAAGGG
Statistics
Matches: 482, Mismatches: 43, Indels: 83
0.79 0.07 0.14
Matches are distributed among these distances:
84 4 0.01
85 19 0.04
86 32 0.07
87 31 0.06
88 31 0.06
89 11 0.02
90 4 0.01
91 5 0.01
92 2 0.00
93 165 0.34
94 178 0.37
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (93 bp):
AGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAA
GGCCTAATGCCGATGTGATGAATGTGAA
Found at i:26398247 original size:16 final size:16
Alignment explanation
Indices: 26398228--26398281 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
26398218 GATGTGATGA
26398228 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
**
26398244 ATGTGCGA-TGTGATGA-
1 ATGTGAAAGTGT-AT-AT
26398260 ATGTGAAAGTGTATAT
1 ATGTGAAAGTGTATAT
26398276 ATGTGA
1 ATGTGA
26398282 TAAGGCCTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
15 4 0.13
16 22 0.73
17 4 0.13
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (16 bp):
ATGTGAAAGTGTATAT
Found at i:26398253 original size:32 final size:32
Alignment explanation
Indices: 26398217--26398280 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
26398207 GCCTAATGGC
26398217 CGATGTGATGAATGTGAAAGTGTATATATGTG
1 CGATGTGATGAATGTGAAAGTGTATATATGTG
26398249 CGATGTGATGAATGTGAAAGTGTATATATGTG
1 CGATGTGATGAATGTGAAAGTGTATATATGTG
26398281 ATAAGGCCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.31, C:0.03, G:0.31, T:0.34
Consensus pattern (32 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:26398302 original size:47 final size:47
Alignment explanation
Indices: 26398249--26398660 Score: 691
Period size: 47 Copynumber: 8.8 Consensus size: 47
26398239 TATATATGTG
26398249 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
26398296 CGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
26398343 CGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
*
26398390 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* *
26398437 CGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
26398484 CGATGTGATGAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
26398530 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * *
26398577 CGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGC
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
* * * * *
26398624 CAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26398661 TCCCGAAGGG
Statistics
Matches: 347, Mismatches: 17, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
46 45 0.13
47 302 0.87
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGC
Found at i:26398365 original size:173 final size:174
Alignment explanation
Indices: 26398073--26398608 Score: 887
Period size: 173 Copynumber: 3.0 Consensus size: 174
26398063 TAAGGCCTAA
26398073 TGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 TGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
26398138 GAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
66 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
26398203 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
131 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
26398247 TG-CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 TGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
26398311 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
66 GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
26398376 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG
131 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA--T-AT---G
* *
26398428 CCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGAT
1 -----T-GCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGAT
*
26398493 GAATGTGAAAGTGTATATATGT-ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
60 GAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATAT
*
26398557 ATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
125 GTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
26398607 TG
1 TG
26398609 ACAGGGCCGA
Statistics
Matches: 342, Mismatches: 5, Indels: 31
0.90 0.01 0.08
Matches are distributed among these distances:
173 163 0.48
174 3 0.01
175 4 0.01
177 1 0.00
178 2 0.01
179 1 0.00
181 1 0.00
182 2 0.01
183 1 0.00
185 4 0.01
186 1 0.00
187 84 0.25
188 75 0.22
ACGTcount: A:0.31, C:0.08, G:0.30, T:0.30
Consensus pattern (174 bp):
TGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
GAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATG
Found at i:26398834 original size:37 final size:37
Alignment explanation
Indices: 26398778--26398856 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
26398768 CCGAGCTCTA
* *
26398778 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
26398815 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26398852 AAGAC
1 AAGAC
26398857 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26410681 original size:37 final size:37
Alignment explanation
Indices: 26410627--26410717 Score: 164
Period size: 37 Copynumber: 2.5 Consensus size: 37
26410617 TTTAAGTGAT
* *
26410627 AATTAAGATAGAATTATTAAATGAGAATAGTTTATTA
1 AATTAAAATAGAGTTATTAAATGAGAATAGTTTATTA
26410664 AATTAAAATAGAGTTATTAAATGAGAATAGTTTATTA
1 AATTAAAATAGAGTTATTAAATGAGAATAGTTTATTA
26410701 AATTAAAATAGAGTTAT
1 AATTAAAATAGAGTTAT
26410718 CACTTAACTA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.37
Consensus pattern (37 bp):
AATTAAAATAGAGTTATTAAATGAGAATAGTTTATTA
Found at i:26410682 original size:19 final size:19
Alignment explanation
Indices: 26410627--26410717 Score: 96
Period size: 18 Copynumber: 4.9 Consensus size: 19
26410617 TTTAAGTGAT
* *
26410627 AATTAAGATAGAATTATTA
1 AATTAAAATAGAGTTATTA
* * *
26410646 AATGAGAATAG-TTTATTA
1 AATTAAAATAGAGTTATTA
26410664 AATTAAAATAGAGTTATTA
1 AATTAAAATAGAGTTATTA
* * *
26410683 AATGAGAATAG-TTTATTA
1 AATTAAAATAGAGTTATTA
26410701 AATTAAAATAGAGTTAT
1 AATTAAAATAGAGTTAT
26410718 CACTTAACTA
Statistics
Matches: 57, Mismatches: 13, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
18 30 0.53
19 27 0.47
ACGTcount: A:0.49, C:0.00, G:0.13, T:0.37
Consensus pattern (19 bp):
AATTAAAATAGAGTTATTA
Found at i:26411415 original size:28 final size:29
Alignment explanation
Indices: 26411358--26411424 Score: 102
Period size: 29 Copynumber: 2.3 Consensus size: 29
26411348 TTTTTTTGAT
*
26411358 ATATTTTGGTAAATAAAAATATATATATA
1 ATATTTTGGTAAATAAAAATAAATATATA
26411387 ATATTTTGGTAAATAAAAA-AAAGT-TATA
1 ATATTTTGGTAAATAAAAATAAA-TATATA
26411415 ATATTTTGGT
1 ATATTTTGGT
26411425 TATTTTTTAT
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
28 16 0.44
29 20 0.56
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (29 bp):
ATATTTTGGTAAATAAAAATAAATATATA
Found at i:26411703 original size:18 final size:20
Alignment explanation
Indices: 26411669--26411705 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
26411659 TTTCTCAAAA
26411669 TTAAAAATCATTAAAATTAT
1 TTAAAAATCATTAAAATTAT
26411689 TTAAAAAT-A-TAAAATTA
1 TTAAAAATCATTAAAATTA
26411706 AAAATATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 1 0.06
20 8 0.47
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
TTAAAAATCATTAAAATTAT
Found at i:26418052 original size:50 final size:50
Alignment explanation
Indices: 26417952--26418190 Score: 228
Period size: 50 Copynumber: 4.7 Consensus size: 50
26417942 AAAGAGATCT
*
26417952 CATGTAAGACCATGTCTCGGACATGACATTGGCATCATTTAGATTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGACATTGGCA-C---T-GA-TATGAGAGGTCC
** *
26418008 CATGTAAGACCATGTCTGGGACATGATGTTGGCACTGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGACATTGGCACTGATATGAGAGGTCC
** * * * **
26418058 CGCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGACATTGGCACTGATATGAGAGGTCC
* * * * * * **
26418108 CATGTAAGACCATATCTGGGATATGACATTGGCAGT-ACAGGAAACATCC
1 CATGTAAGACCATGTCTGGGACATGACATTGGCACTGATATGAGAGGTCC
* *
26418157 CATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGACATTGGCA
26418191 TGTTATTATC
Statistics
Matches: 152, Mismatches: 31, Indels: 7
0.80 0.16 0.04
Matches are distributed among these distances:
49 38 0.25
50 79 0.52
51 2 0.01
52 1 0.01
55 1 0.01
56 31 0.20
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGACATTGGCACTGATATGAGAGGTCC
Found at i:26422543 original size:26 final size:26
Alignment explanation
Indices: 26422508--26422558 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
26422498 AATGTGAAAG
*
26422508 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
26422534 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
26422559 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:26422609 original size:103 final size:104
Alignment explanation
Indices: 26422431--26422689 Score: 443
Period size: 103 Copynumber: 2.5 Consensus size: 104
26422421 TTGTATATAA
** * *
26422431 AGGGGTTGCTGTGTGCTGATTCCCCGATTTA-TGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
26422494 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
26422533 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
26422598 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
26422637 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATAT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATAT
26422690 ATGAAAAAAG
Statistics
Matches: 148, Mismatches: 6, Indels: 4
0.94 0.04 0.03
Matches are distributed among these distances:
102 27 0.18
103 63 0.43
104 58 0.39
ACGTcount: A:0.18, C:0.19, G:0.31, T:0.32
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:26422762 original size:89 final size:89
Alignment explanation
Indices: 26422607--26422775 Score: 329
Period size: 89 Copynumber: 1.9 Consensus size: 89
26422597 TTGAAATGTG
*
26422607 AAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGG
1 AAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGG
26422672 TGGTGCTAAGTGCGATATATGAAA
66 TGGTGCTAAGTGCGATATATGAAA
26422696 AAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGG
1 AAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGG
26422761 TGGTGCTAAGTGCGA
66 TGGTGCTAAGTGCGA
26422776 GATCCACCAA
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 79 1.00
ACGTcount: A:0.20, C:0.19, G:0.33, T:0.28
Consensus pattern (89 bp):
AAAGGGGGTTGCTATGTGCTGATTCCCCCGAGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGG
TGGTGCTAAGTGCGATATATGAAA
Found at i:26430153 original size:104 final size:104
Alignment explanation
Indices: 26430000--26430369 Score: 629
Period size: 104 Copynumber: 3.6 Consensus size: 104
26429990 TGTATATAAA
** * *
26430000 AGGGGTTGCTGTGTGCTGATTCCCCGATTTCATGGGTGGTGCTATGTGCG-TGATCCACCATATC
1 AGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATC
26430064 TTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
64 TTTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
26430105 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
26430170 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
26430209 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
*
26430274 TGAAA--TGAAAAGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
26430311 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
26430370 ATAACGGTTA
Statistics
Matches: 255, Mismatches: 9, Indels: 5
0.95 0.03 0.02
Matches are distributed among these distances:
102 88 0.35
104 142 0.56
105 25 0.10
ACGTcount: A:0.19, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Done.